Table 4.
Identified transposable elements in F. udum F-02845 genome showing highest count of Ty1/Copia.
| Sr. No. | Elements | Number of elements | Length occupied | Percentage of sequence |
|---|---|---|---|---|
| Retroelements | 128 | 88,783 bp | 0.16% | |
| 1. | SINEs | 0 | 0 bp | 0.00% |
| 2. | Penelope | 0 | 0 bp | 0.00% |
| 3. | LINEs: | 0 | 0 bp | 0.00% |
| 4. | CRE/SLACS | 0 | 0 bp | 0.00% |
| 5. | L2/CR1/Rex | 0 | 0 bp | 0.00% |
| 6. | R1/LOA/Jockey | 0 | 0 bp | 0.00% |
| 7. | R2/R4/NeSL | 0 | 0 bp | 0.00% |
| 8. | RTE/Bov-B | 0 | 0 bp | 0.00% |
| 9. | L1/CIN4 | 0 | 0 bp | 0.00% |
| LTR elements | 128 | 88,783 bp | 0.16% | |
| 1. | BEL/Pao | 0 | 0 bp | 0.00% |
| 2. | Ty1/Copia | 68 | 29,240 bp | 0.05% |
| 3. | Gypsy/DIRS1 | 60 | 59,543 bp | 0.11% |
| 4. | Retroviral | 0 | 0 bp | 0.00% |
| DNA transposons | 128 | 61,613 bp | 0.11% | |
| 1. | hobo-Activator | 5 | 703 bp | 0.00% |
| 2. | Tc1-IS630-Pogo | 22 | 14,498 bp | 0.03% |
| 3. | En-Spm | 0 | 0 bp | 0.00% |
| 4. | MuDR-IS905 | 0 | 0 bp | 0.00% |
| 5. | PiggyBac | 14 | 3,987 bp | 0.01% |
| 6. | Tourist/Harbinger | 0 | 0 bp | 0.00% |
| 7. | Other (Mirage, P-element, Transib) | 0 | 0 bp | 0.00% |
| 8. | Rolling-circles | 0 | 0 bp | 0.00% |
| 9. | Unclassified: | 3 | 423 bp | 0.00% |
| Total interspersed repeats | 150,819 bp | 0.27% | ||
| 1. | Small RNA: | 50 | 16,939 bp | 0.03% |
| 2. | Satellites: | 0 | 0 bp | 0.00% |
| 3. | Simple repeats: | 13,725 | 636,194 | 1.13% |
| 4. | Low complexity: | 1,776 | 91,188 bp | 0.16% |