Table 2.
Summary of microorganisms of all genera detected by Modified Chip, Direct Plating and Miseq high-throughput sequencing (“-“means not detected)
| Genus | Proportion (Miseq high-throughput sequencing) (%) | Direct plating methods | Modified ichip first generation | Modified ichip second generation |
|---|---|---|---|---|
| Actinotalea | – | – | 1 | – |
| uncultured Actinotalea | – | – | 1 | – |
| uncultured Lysobacter | – | – | 7 | 1 |
| Alkalihalobacillus | – | – | 4 | – |
| Pannonibacter | 21.0689 | – | 5 | – |
| Pseudomonas | – | – | 13 | 26 |
| Hyphomicrobium | – | – | 1 | – |
| Bosea | – | – | 1 | – |
| Microbacterium | 0.0504 | – | 1 | – |
| Kocuria | – | – | 1 | – |
| uncultured Aquiflexum | – | – | – | 2 |
| Ochrobactrum | – | – | – | 2 |
| Brucella | – | – | – | 2 |
| Brevibacillus | – | – | – | 1 |
| Agromyces | – | 2 | 6 | 4 |
| Bacillus | 45.2028 | 3 | 3 | 5 |
| Brevibacterium | 6.6772 | 13 | – | – |
| Geobacillus | – | 3 | – | – |
| Paenibacillus | 1.1345 | 1 | – | 3 |
| Sphingomonas | – | 4 | 1 | 2 |
| Alkalicoccus | 0.1152 | – | – | – |
| Diaphorobacter | 0.0216 | – | – | – |
| Pajaroellobacter | 0.0108 | – | – | – |
| Phenylobacterium | 0.4322 | – | – | – |
| Parabacteroides | 0.2197 | – | – | – |
| Paracoccus | 0.0612 | – | – | – |
| Muribaculum | 0.2305 | – | – | – |
| Akkermansia | 1.6423 | – | – | – |
| Alicyclobacillus | 0.2917 | – | – | – |
| Prevotella | 0.0972 | – | – | – |
| Hydrogenobacter | 8.107 | – | – | – |
| Egicoccus | 0.6663 | – | – | – |
| Alloprevotella | 0.4358 | – | – | – |
| Eubacterium | 0.2161 | – | – | – |
| Mogibacterium | 0.2089 | – | – | – |
| Roseburia | 0.2017 | – | – | – |
| Alicycliphilus | 0.7383 | – | – | – |
| Alistipes | 0.479 | – | – | – |
| Rubrobacter | 0.1369 | – | – | – |
| Nitriliruptor | 7.8441 | – | – | – |
| Hydrogenophilus | 0.1044 | – | – | – |
| Rhodococcus | 0.0432 | – | – | – |
| Bacteroides | 2.0529 | – | – | – |
| Blautia | 0.5186 | – | – | – |
| Other bacterium | – | – | 2 | 11 |
| Other uncultured bacterium | 0.479 | – | – | 1 |