Table 2.
Proposed function of genes selected as the molecular signature by integrative analysis of the transcripts and proteins. Component indicates whether the gene contributes to the component 1 or 2 of the multivariate model. Transcript/Protein indicate either the transcript or protein contributes to the Outcome: high or low infestation. The Top Blast hit and description were obtained from the plant protein database. Gene ontology (GO) annotation and Enzyme activity were obtained from the GO database using Blast2Go.a denotes proteins/transcripts that were also found to be differentially expressed in Lane et al. 2016 [19]
| Component | Transcript/Protein | Outcome | Transcript ID | Top Blast hit | Top Blast hit description | Go Annotation | Enzyme activity |
|---|---|---|---|---|---|---|---|
| 1 | Protein | High | comp45985_c0_seq1 | XP_0228429190.1 | probable caffeoyl-CoA O-methyltransferase At4g26220 | P: methylation | Caffeoyl-CoA O-methyltransferase |
| 1 | Protein | High | comp53134_c0_seq2a | XP_0228792430.1 | transketolase, chloroplastic-like | P: pentose-phosphate shunt | Transketolase; Formaldehyde transketolase |
| 1 | Protein | High | comp53610_c0_seq4 | XP_0228935600.1 | cationic peroxidase 1-like isoform X2 | P: response to oxidative stress | Peroxidase |
| 1 | Protein | High | comp54447_c0_seq1 | XP_0228534080.1 | dirigent protein 22-like | C: apoplast | |
| 1 | Protein | High | comp59303_c1_seq3 | XP_0128477040.1 | beta-glucosidase 40-like | P: carbohydrate metabolic process | Beta-glucosidase |
| 1 | Protein | High | comp60417_c0_seq1a | XP_0150624040.1 | kynurenine formamidase isoform X1 | P: tryptophan catabolic process to kynurenine | Arylformamidase |
| 1 | Protein | High | comp60577_c0_seq1a | XP_0228728610.1 | acidic endochitinase-like | P: carbohydrate metabolic process | Chitinase |
| 1 | Protein | High | comp64874_c0_seq1 | XP_0228522760.1 | pectinesterase-like isoform X2 | P: pectin catabolic process | Pectinesterase; Carboxylesterase |
| 1 | Protein | Low | comp53851_c0_seq1a | XP_0228443000.1 | phosphoprotein ECPP44-like | P: response to water | |
| 1 & 2 | Protein | High | comp53180_c0_seq1 | XP_0228703950.1 | late embryogenesis abundant protein D-29-like | ||
| 1 & 2 | Protein | High | comp53477_c0_seq1a | XP_0228639540.1 | dirigent protein 22-like | C: extracellular region | |
| 1 & 2 | Protein | High | comp59415_c0_seq2a | XP_0228768020.1 | peroxidase 52-like | P: response to oxidative stress; | Peroxidase |
| 1 & 2 | Protein | High | comp63717_c1_seq1 | XP_0228899110.1 | probable aspartyl aminopeptidase | P: chaperone-mediated protein folding | Acting on peptide bonds (peptidases) |
| 1 & 2 | Protein | High | comp64621_c0_seq1 | XP_0228820390.1 | multicopper oxidase LPR2-like | P: oxidation–reduction process | Bilirubin oxidase |
| 1 | Transcript | High | comp51972_c0_seq3a | XP_0228440310.1 | probable strigolactone esterase DAD2 | P: secondary shoot formation | Carboxylesterase |
| 1 | Transcript | High | comp61147_c0_seq1a | XP_0228728610.1 | acidic endochitinase-like | P: carbohydrate metabolic process | Chitinase |
| 2 | Transcript | Low | comp44937_c0_seq1 | –-NA–- | |||
| 2 | Transcript | Low | comp64810_c0_seq7 | XP_0228725640.1 | F-box protein At4g00755-like isoform X1 |