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. 2022 Nov 12;30(3):779–793. doi: 10.1038/s41418-022-01085-x
RT Primer
PUMA Forward: GACCTCAACGCACAGTACGAG
Reverse: AGGAGTCCCATGATGAGATTGT
p53 Forward: CAGCACATGACGGAGGTTGT
Reverse: TCATCCAAATACTCCACACGC
BAX Forward: CCCGAGAGGTCTTTTTCCGAG
Reverse: CCAGCCCATGATGGTTCTGAT
p21 Forward: TGTCCGTCAGAACCCATGC
Reverse: AAAGTCGAAGTTCCATCGCTC
QSER1 Forward: ACTGGCGGTAACAGTCCATC
Reverse: ACCCACAGTGGTTGAGGAAG
SIN3A Forward: GGTGGAGGATGCGCTATCTTA
Reverse: GGGTGTCGATGCTCTGAGATTT
ChIP Primer
PUMA TSS Forward: GGAGATCGCCCAGACACC
Reverse: TCTGTGTACGCATCGCTGG
QBP Forward: GATGGGGGATGGGAAACCAG
Reverse: ATGGGCTGTTAACCCTGTGG
PUMAas TSS Forward: TGCTGACTCACCGGCTATAA
Reverse: ACTAGGCCGCCGAGGAGT
Bax Forward: TGCGGGGCAGCGGCCATTTT
Reverse: TGAGAGCCCCGCTGAACGT
Negative control-1 Forward: GACTGTACTGTTCAGAGGTGTAT
Reverse: CCTTCCCTACTCCAGTTACAGA
Negative control-2 Forward: ATTTCCCATCAGTATTGTGACCAA
Reverse: AGAGTTCTCAGCGGGAGTTTAAAA
Sequencing Primer
QBP Forward: AATTGCAGCCCACTGTCTCT
Reverse: GGTTCCCTAAGGCCTACAGC
sgRNA
QBP sgRNA-1: GGACACCGATTTCAAGGCCA
QBP sgRNA-2: GAGTTGACAGTCCTCCCGCT
QSER1 sgRNA-1: TTTCTATTGCTGAAGGTGGT
QSER1 sgRNA-2: AGGGCTCCATCCTGGCAGAC
shRNA
QSER1 shRNA-1:
Forward: CCGGGCTCCTGTTGATAGTACATTACTCGAGTAATGTACTATCAACAGGAGCTTTTTTG
Reverse: AATTCAAAAAGCTCCTGTTGATAGTACATTACTCGAGTAATGTACTATCAACAGGAGC
QSER1 shRNA-2:
Forward: CCGGAGCACTCCTTACATAGTTATCCTCGAGGATAACTATGTAAGGAGTGCTTTTTTG
Reverse: AATTCAAAAAAGCACTCCTTACATAGTTATCCTCGAGGATAACTATGTAAGGAGTGCT
SIN3A shRNA-1:
Forward: CCGGGGTGGAACAGAATCGTTATTTCTCGAGAAATAACGATTCTGTTCCACCTTTTTG
Reverse: AATTCAAAAAGGTGGAACAGAATCGTTATTTCTCGAGAAATAACGATTCTGTTCCACC
SIN3A shRNA-2:
Forward: CCGGGATCAAATCAGAGGACTATATCTCGAGATATAGTCCTCTGATTTGATCTTTTTG
Reverse: AATTCAAAAAGATCAAATCAGAGGACTATATCTCGAGATATAGTCCTCTGATTTGATC