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. Author manuscript; available in PMC: 2023 Mar 4.
Published in final edited form as: Nat Methods. 2022 Sep 16;19(10):1230–1233. doi: 10.1038/s41592-022-01609-w

Extended Data Fig. 5 ∣. One example of simple deletion misinterpreted as complex event by short-read data due to local repeats.

Extended Data Fig. 5 ∣

a, Two Dotplots are created with Gepard to illustrate the local repeats at the variant locus on the reference genome (left) and the breakpoints comparing HiFi read (READ, y-axis) and the reference genome (REF, x-axis). b, The IGV view at this locus with reads grouped by pair orientation and colored by insert-size and pair orientation.