Table 1.
Transcriptomic profiles of C. reinhardtii cells after X- or γ-irradiation with two different doses.
| ORF name | XR6 | XR50 | GR6 | GR50 | Gene ID | Gene name | Description |
|---|---|---|---|---|---|---|---|
| CHLRE_02g082000v5 | 3.33 | 5.54 | 4.36 | 3.62 | 5727320 | CrADG | DNA repair glycosylase |
| CHLRE_02g100000v5 | 2.36 | 4.04 | 2.57 | 4.32 | 5725571 | CrRPA30 | replication protein A 30 kDa subunit |
| CHLRE_03g145687v5 | 1.85 | 3.4 | 1.29 | 3.25 | 5721250 | CrFEN1 | nuclease, Rad2 family |
| CHLRE_04g214800v5 | -1.71 | N.D. | N.D. | -1.74 | 5724268 | CrVMPL1 | R-SNARE protein, VAMP-like family |
| CHLRE_06g263050v5 | 1.4 | 2.5 | 1.09 | 3.18 | 5722002 | CrEFP2 | mitochondrial elongation factor P |
| CHLRE_06g275750v5 | N.D. | -1.09 | -2.09 | N.D. | 5721748 | CrHTR2 | histone H3 |
| CHLRE_10g423800v5 | 3.16 | 4.3 | 2.96 | 4.82 | 5728221 | CrKU | DNA binding protein |
| CHLRE_12g505500v5 | 2.2 | 2.91 | 1.5 | 1.65 | 5716467 | CrHTR2 | histone H3 |
| CHLRE_12g509400v5 | 1.48 | 1.97 | 1.43 | 2.67 | 5716542 | CrRIR2B | ribonucleoside-diphosphate reductase small subunit |
| CHLRE_14g622850v5 | 4.06 | 5.83 | 3.58 | 6.38 | 5718221 | CrRAD51 | DNA recombination protein |
| CHLRE_14g632799v5 | 1.87 | 2.5 | 1.91 | 3.17 | 5718230 | CrZSP2 | lectin-like component of the zygote cell wall |
| CHLRE_16g664250v5 | 2.17 | 3.49 | 1.78 | 3.62 | 5726998 | CrOASTL2 | cysteine synthase |
| CHLRE_16g682725v5 | 1.23 | 2.84 | 1.54 | 3.46 | 5724816 | CrGSTS2 | glutathione S-transferase |
| CHLRE_17g718850v5 | 3.77 | 4.9 | 3.25 | 5.85 | 5729312 | CrRPA70A | replication protein A subunit |
| CHLRE_17g740950v5 | -1.33 | -1.22 | -1.15 | -1.34 | 5726658 | CrLHL4 | high intensity light-inducible lhc-like gene |
Genes with more than a two-fold transcription change in both X- and γ-irradiated groups and a descriptive annotation for gene name were selected. XR6 (GR6) and XR50 (GR50) represent X-rays (γ-rays) of 6 and 50 Gy, respectively. Digits are log2-transformed of normalized fold change values. Open reading frame (ORF) names are used to alphabetically list the gene names that are temporarily attributed to an ORF by a sequencing project. Underlined genes were shown to be explicitly associated with DNA damage response (DDR) or dose-dependently induced by all the irradiations. The genes in italic have average read counts of no more than 5. N.D., not detected.