TABLE 1.
Protein | Alias | Motif | Start | End |
---|---|---|---|---|
S | A | WFHAIH | 64 | 69 |
B | KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEY | 129 | 170 | |
C | DCTMYIC | 737 | 743 | |
D | MQMAYR | 900 | 905 | |
E | YHLMSFPQSAPHG | 1047 | 1059 | |
F | HVTYVPAQEKNFTTAPAICHDGKAHFPRE | 1064 | 1092 | |
G | THWFVTQRNFYEPQI | 1100 | 1114 | |
H | DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHY | 1199 | 1272 | |
E | A | AILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPD | 32 | 72 |
M | A | WICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGIAIAMACLV | 31 | 88 |
B | MWSFNPE | 109 | 115 | |
C | HHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIA | 154 | 218 | |
N | A | QGLPNNTASWFTALTQHGKED | 43 | 63 |
B | DQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIG | 82 | 147 | |
C | LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTW | 291 | 330 | |
D | FKDQVILLNKHIDAYKTFPPTE | 346 | 367 | |
ORF3a | A | MDLFMR | 1 | 6 |
B | ASKIITLKKRWQ | 59 | 70 | |
C | YLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNS | 107 | 162 | |
D | EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQ | 181 | 213 | |
E | HVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYD | 227 | 265 | |
ORF6 | A | MFHLVDFQVTIAEILLIIMRTFKVSIWNLDYIINLIIKNLSKSLTENKYSQLDEEQPMEID | 1 | 61 |
ORF7a | A | MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTL | 1 | 116 |
ORF7b | A | MIELSLIDFYLCFLAFLLFLVLIMLIIFWFSLELQDHNETCHA | 1 | 43 |
ORF8 | A | MKFLVFLGIITTVAAFHQECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRV | 1 | 116 |
ORF10 | A | MGYINVFAFPFTIYSLLLCRMNSRNYIAQVDVVNFNLT | 1 | 38 |
nsp2 | A | IDTKRGVYCCREHEHEIAWYTERSEKSYELQTPF | 42 | 75 |
B | CDHCGETSWQTGDFVKATCE | 143 | 162 | |
nsp3 | A | SHMYCSFY | 100 | 107 |
B | EDDYQGKPLEFGATSAALQPEEEQEEDW | 134 | 161 | |
C | SEYTGNYQCGHYKHITSKE | 1007 | 1025 | |
D | HKPIVWH | 1169 | 1175 | |
E | HFISNSWLMWLIINLVQM | 1539 | 1556 | |
F | YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVE | 1573 | 1604 | |
G | SHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPF | 1888 | 1922 | |
nsp4 | A | MRFRRAFGEYSH | 302 | 313 |
B | FLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV | 359 | 402 | |
nsp6 | A | YFNMVYMPASWVMRIMTWLDM | 80 | 100 |
nsp10 | A | SCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTC | 72 | 103 |
B | CTVCGMWKGYGCSCDQ | 117 | 132 | |
RNA-dependent RNA polymerase | A | RYFKYWDQTYHPNCVNCLDDRCI | 285 | 307 |
B | FYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIM | 594 | 633 | |
C | SRYWEPEFYEAMYTPH | 913 | 928 | |
2′-O-ribose methyltransferase | A | EHSWNADLYKLMGHFAWWT | 173 | 191 |
3C-like proteinase | A | YDCVSFCYMHHMELP | 154 | 168 |
3′-to-5′ exonuclease | A | DMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIG | 48 | 88 |
B | PPPGDQFKHLIP | 140 | 151 | |
C | TYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG | 223 | 300 | |
D | RHHANEYRLYLDAYNM | 485 | 500 | |
helicase | A | MPLSAPTLVPQEHYVRITG | 233 | 251 |
B | SAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYN | 468 | 516 |
Ig indicates immunoglobulin; SARS-COV-2, severe acute respiratory syndrome coronavirus 2.