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. 2023 Mar 6;12:e79257. doi: 10.7554/eLife.79257

Table 1. Parameters associated with rates, feedback and receptor profiles along with their range of values.

The chemical rate values used in numerical analysis are scaled by the unbinding rate ru,κu taken to be 1. The corresponding experimental values have been taken from Lauffenburger and Linderman, 1996 where available.

Parameter Symbol Numerical values Experimental values
Chemical rates
Signalling branch
Unbinding rate r u 1 0.34 min-1
Binding rate r b 0.1–1 nM-1 0.072 nM-1min-1
Degradation rate r d 0.001–0.01 0.0022 min-1
Internalisation rate rI 0.1–1 0.03–0.3 min-1
Recycling rate rR 0.1–1 0.058 min-1
Non-signalling branch
Unbinding rate κu 1 -
Binding rate κb 0.1–1 nM-1 -
Degradation rate κd 0.001–0.01 -
Internalisation rate κI 0.1–1 -
Recycling rate κR 0.1–1 -
Conjugation rate κC 0.1–1 nM-1 -
Splitting rate κS 0.1–1 -
Feedback control
Amplification α 0.1-10 -
Feedback Sensitivity γ 0-1
nM-1
-
Feedback strength n 0-5 -
Receptor control
Signalling receptors
Hill coefficient a 0-5 -
Minimum concentration A 0 50-250 nM -
Maximum concentration A0+A1 50-500 nM -
Position of half-maximum A 2 0.01-1 -
Non-signalling receptors
Hill coefficient b 0-5
Minimum concentration B 0 50-250 nM -
Maximum concentration B0+B1 50-500 nM -
Position of half-maximum B 2 0.01-1 -
Ligand input
Maximum concentration A 30 nM -
Decay length λ 0.2-0.5 -
Number of cells along x-direction n x 101 -
Number of cells along y-direction n y 101 -