Table 1. Parameters associated with rates, feedback and receptor profiles along with their range of values.
The chemical rate values used in numerical analysis are scaled by the unbinding rate taken to be 1. The corresponding experimental values have been taken from Lauffenburger and Linderman, 1996 where available.
| Parameter | Symbol | Numerical values | Experimental values |
|---|---|---|---|
| Chemical rates | |||
| Signalling branch | |||
| Unbinding rate | r u | 1 | 0.34 |
| Binding rate | r b | 0.1–1 | 0.072 |
| Degradation rate | r d | 0.001–0.01 | 0.0022 |
| Internalisation rate | 0.1–1 | 0.03–0.3 | |
| Recycling rate | 0.1–1 | 0.058 | |
| Non-signalling branch | |||
| Unbinding rate | 1 | - | |
| Binding rate | 0.1–1 | - | |
| Degradation rate | 0.001–0.01 | - | |
| Internalisation rate | 0.1–1 | - | |
| Recycling rate | 0.1–1 | - | |
| Conjugation rate | 0.1–1 | - | |
| Splitting rate | 0.1–1 | - | |
| Feedback control | |||
| Amplification | - | ||
| Feedback Sensitivity |
|
- | |
| Feedback strength | n | - | |
| Receptor control | |||
| Signalling receptors | |||
| Hill coefficient | - | ||
| Minimum concentration | A 0 | nM | - |
| Maximum concentration | nM | - | |
| Position of half-maximum | A 2 | - | |
| Non-signalling receptors | |||
| Hill coefficient | |||
| Minimum concentration | B 0 | nM | - |
| Maximum concentration | nM | - | |
| Position of half-maximum | B 2 | - | |
| Ligand input | |||
| Maximum concentration | 30 nM | - | |
| Decay length | - | ||
| Number of cells along -direction | n x | 101 | - |
| Number of cells along -direction | n y | 101 | - |