Skip to main content
. 2023 Mar 6;12:e79257. doi: 10.7554/eLife.79257

Table 3. Values of chemical rates and feedback parameters obtained after optimising the two-tier two-branch channel with inter-branch feedback on the internalisation rate κI of the non-signalling branch, keeping the receptor profiles spatially uniform, with and without uncorrelated noise.

The optimised values of the chemical rates quoted below are scaled by the unbinding rate ru, κu taken to be 1.

Parameter (Symbol) Optimised value
uniform receptor profiles uniform receptor profiles with uncorrelated noise
Chemical rates
Signalling branch
Binding rate (rb,nM-1) 0.0922 0.0782
Degradation rate in tier 1 (rd(1)) 0.0089 0.0041
Degradation rate in tier 2 (rd(2)) 0.0092 0.0095
Internalisation rate (rI) 0.0225 0.0611
Recycling rate (rR) 0.0403 0.0971
Non-signalling branch
Binding rate (κb,nM-1) 0.0464 0.0265
Degradation rate in tier 1 (κd(1)) 0.0035 0.0045
Degradation rate in tier 2 (κd(2)) 0.0071 0.0068
Internalisation rate (κI) 0.02 0.0513
Recycling rate (κR) 0.0989 0.0770
Conjugation rate (κC,nM-1) 0.7605 0.7579
Splitting rate (κS) 0.7038 0.3036
Feedback control
Amplification (α) - -
Feedback Sensitivity (γ) 0.0939 0.1946
Feedback strength (n) 4.6310 0.6202
Tier-wise weights
weight of tier 1 (w1) 0.0046 0.2875
weight of tier 2 (w2) 0.9954 0.7125