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. 2023 Mar 6;13:3703. doi: 10.1038/s41598-023-30875-7

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Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Genomic structure of (A) Torque teno equus virus 2 (TTEqV2) and (B) Torque teno equus virus 1 (TTEqV1). Inside the annotated circular genome for TTEqV2 is a plot showing the coverage at each nucleotide position (generated using circlize v0.4.15⁵⁸). The region sequenced via subsequent targeted amplicon sequencing is indicated by a bar within the coverage plot. For both viruses, genomic features of interest are labelled with the feature name followed by the position and sequence (or GC content for GC-rich regions in TTEqV2) below.