Table 2.
Case | Genomic position | Base alteration | Amino acid change | Exon | Domain | Pathogenic variant type | Parental origin | ACMG scoring | Score | Reported/Not reported |
---|---|---|---|---|---|---|---|---|---|---|
P1 | Chr9:130438188 | c.1216 C > T | p.R406C | 14 | 3b | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [24, 26, 27] |
P2 | Chr9:130434297 | c.664-1G>- | - | 9 | 3a | Splice | De novo | PVS1 + PS2 + PM2 | P | No |
P3 | Chr9:130430439 | c.875G > A | p.R292H | 10 | 3a | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [28, 29] |
P4 | Chr9:130438188 | c.1216 C > T | p.R406C | 14 | 3b | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [24, 26, 27] |
P5 | Chr9:130430438 | c.874 C > T | p.R292C | 10 | 3a | Missense | Maternal | PS1 + PS4 + PM2 + PP1 | P | [2] |
P6 | Chr9:130430438 | c.874 C > T | p.R292C | 10 | 3a | Missense | Maternal | PS1 + PS4 + PM2 + PP1 | P | [2] |
P7 | Chr9:130440807 | c.1457T > G | p.M486R | 16 | 2 | Missense | De novo | PS2 + PM2 | LP | No |
P8 | Chr9:130438188 | c.1216 C > T | p.R406C | 14 | 3b | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [24, 26, 27] |
P9 | Chr9:130428514 | c.733 C > A | p.H245N | 8 | 2 | Missense | De novo | PS2 + PM2 + PP2 | P | No |
P10 | Chr9:130434396 | c.1029 + 1G > T | - | 12 | 3a | Splice | De novo | PS1 + PS2 + PM2 | P | [30] |
P11 | Chr9:130442466 | c.1493_1505del | p.H498Pfs*44 | 17 | 2 | Frameshift | De novo | PVS1 + PS2 + PM2 | LP | No |
P12 | Chr9:130440789 | c.1439 C > T | p.P480L | 17 | 2 | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [4, 17–20] |
P13 | Chr9:130438188 | c.1216 C > T | p.R406C | 14 | 3b | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | [24, 26, 27] |
P14 | Chr9:130430411 | c.847G > A | p.E283K | 10 | 3a | Missense | Maternal | PS1 + PM2 + PP1 | P | [19] |
P15 | Chr9:130416028 | C.122T > G | p.L41R | 3 | 1 | Missense | De novo | PS1 + PS2 + PS4 + PM2 | P | No |
P16 | Chr9:130438197 | c.1227_1229del | p.L410del | 14 | 3b | Non frameshift | De novo | PS2 + PM2 + PM4 | LP | No |
P17 | Chr9:130422330 | c.268G > C | p.D90H | 5 | 1 | Missense | De novo | PS2 + PS4 + PM2 | P | No |
P18 | Chr9:130416030 | c.128_130del | p.S43del | 3 | 1 | Non frameshift | De novo | PS2 + PM2 | LP | [22] |
P19 | Chr9:130428484 | c.703 C > T | p.R235* | 10 | 2 | Nonsense | De novo | PVS1 + PS1 + PM2 | P | [25] |
Abbreviations: P; pathogenic, LP: likely pathogenic.