Table 1.

Comparison of homolog detection methods in the max50 dataset

	Pfam		Gene3D		SUPERFAMILY
Method	AUC	AUC1000	AUC	AUC1000	AUC	AUC1000
PROST	99.0	97.2	98.9	95.7	98.5	95.5
CSBLAST	97.0	92.4	96.3	91.0	96.1	90.0
PHMMER	96.4	92.3	96.2	90.4	95.9	90.4
NCBI-BLAST	95.9	90.9	94.4	87.9	93.7	85.7
ESM1bL34M	96.0	89.8	91.9	80.1	92.0	81.1
FASTA	94.6	88.8	93.2	85.2	91.9	83.4