Table 3.
Top 20 differentially regulated P. aeruginosa genes in dual-species verses single-species biofilms
|
Gene ID |
log2 fold change |
P-value |
Padj |
|
|---|---|---|---|---|
|
Upregulated |
PA5384 |
1.136608573 |
4.28E-06 |
0.0002779376198 |
|
PA4097 |
1.000660434 |
3.17E-05 |
0.001214321657 |
|
|
cdhB |
0.9811955186 |
5.21E-06 |
0.0003198899691 |
|
|
PA2161 |
0.9810583138 |
0.0003525619038 |
0.008808371695 |
|
|
cdhC |
0.936864827 |
9.18E-07 |
7.92E-05 |
|
|
cdhA |
0.9176339588 |
1.17E-09 |
4.57E-07 |
|
|
ssrS |
0.9064141369 |
8.59E-13 |
6.76E-10 |
|
|
PA0698 |
0.9014266847 |
1.42E-05 |
0.0006654679167 |
|
|
PA2349 |
0.8950640392 |
2.59E-05 |
0.001067775173 |
|
|
PA2181 |
0.8814108328 |
9.08E-08 |
1.36E-05 |
|
|
PA2090 |
0.8800287264 |
1.03E-07 |
1.50E-05 |
|
|
PA2324 |
0.867636224 |
1.23E-05 |
0.0005976988392 |
|
|
PA2213 |
0.8532908266 |
7.35E-16 |
1.35E-12 |
|
|
PA2180 |
0.8294884121 |
1.24E-09 |
4.57E-07 |
|
|
PA4088 |
0.8176661995 |
7.06E-09 |
1.77E-06 |
|
|
czcC |
0.8158365062 |
9.15E-08 |
1.36E-05 |
|
|
phzC2 |
0.7984412293 |
3.58E-07 |
4.21E-05 |
|
|
phzC1 |
0.788317377 |
3.04E-05 |
0.00117677973 |
|
|
PA4098 |
0.7866314328 |
0.0005949449343 |
0.01341483781 |
|
|
phzA1 |
0.7731714023 |
4.59E-06 |
0.0002943805348 |
|
|
Downregulated |
PA3572 |
−0.9273548369 |
0.003059228691 |
0.0450911657 |
|
argB |
−0.8972467441 |
3.86E-09 |
1.02E-06 |
|
|
rnpB |
−0.8480655754 |
3.66E-08 |
5.77E-06 |
|
|
PA1746 |
−0.7808094482 |
2.35E-05 |
0.0009898437811 |
|
|
PA4351 |
−0.7261070956 |
2.78E-05 |
0.00110592551 |
|
|
PA5303 |
−0.6697670409 |
3.36E-13 |
3.09E-10 |
|
|
ftsY |
−0.5672143027 |
1.04E-08 |
2.29E-06 |
|
|
PA4276.1 |
−0.5616231924 |
1.53E-05 |
0.0006970521393 |
|
|
PA4690.3 |
−0.5391253382 |
0.002180107776 |
0.03467439429 |
|
|
PA1137 |
−0.5377222343 |
1.98E-11 |
9.95E-09 |
|
|
PA3133.3 |
−0.5289323628 |
0.0003527179099 |
0.008808371695 |
|
|
ssrA |
−0.5226447106 |
3.43E-06 |
0.0002369715977 |
|
|
PA3573 |
−0.5188361793 |
6.23E-05 |
0.002219824419 |
|
|
PA4421 |
−0.5151637325 |
1.87E-11 |
9.95E-09 |
|
|
PA1796.1 |
−0.4988013205 |
0.001465215919 |
0.02591835467 |
|
|
PA4637 |
−0.4958503362 |
0.001596304616 |
0.02744549898 |
|
|
PA1510 |
−0.4875966167 |
3.42E-08 |
5.55E-06 |
|
|
PA3951 |
−0.4870639148 |
9.51E-09 |
2.25E-06 |
|
|
PA2943 |
−0.4748718073 |
1.76E-06 |
0.0001407992501 |
|
|
PA3277 |
−0.4616098795 |
0.0007070580094 |
0.01530295354 |