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. 2023 Jan 3;4(3):229–234. doi: 10.1039/d2cb00223j

Overview on physicochemical properties and cellular activities of three-branched CRBN ligands and PROTACs.

Cmpd log D7.4a CHIIAMb % HSA bindingc K i/Kdd (μM) DC50e (nM) % BRD4f deg.
9 1.7 21.1 81 0.2 ± 0.7 n.d.g n.d.
11 3.2 n.d. n.d. 11.0 ± 13.5h n.d. n.d.
13a 3.1 34.5 94 n.d. 6.1 ± 2.4 95
13b 2.5 29.6 91 n.d. 88 ± 53 38
13c 2.5 29.2 90 n.d. 162 ± 41 22
13d 2.5 28.7 90 n.d. 83 ± 80 52
a

Distribution coefficients at pH 7.4 were estimated by an HPLC-based method.

b

Chromatographic hydrophobicity index values referring to IAM chromatography (CHIIAM values), an estimate for drug-membrane interactions and permeability.28

c

Protein binding values were estimated by an HPLC-based method.

d

Affinity values determined in a competitive MST assay as described in the Method sections (see ESI).

e

Concentration at which 50% of BRD4 has been degraded after 24 h treatment of Namalwa cells with each compound ranging from 0.1 to 1000 nM.

f

Percentage of degraded BRD4 after 24 h treatment of Namalwa cells with 0.1 μM of each compound.

g

Not determined.

h

Affinity was determined as a Kdvia initial fluorescence and is reported in place of the Ki.