Table 6.

Haplotype diversity of the clinical isolate

K13 analyzed Variables	Sub-Counties
	Nyamache	Kenyenya	Marani	Bonchari	Overall
Sample size	5	3	3	2	13
Number of haplotypes(h)	2	1	1	2	6
Number of nucleotide sites analyzed	671,458	561	539	561,458	671,458,561,539
Haplotype(gene) diversity (hd)	0.312	0.324	0.315	0.302	0.305
Standard deviation of haplotype diversity	0.082	0.73	0.72	0.89	0.078
Nucleotide diversity	0.00242	0.00115	0.00214	0.00131	0.000129
Variance of haplotype diversity	0.00724	0.01342	0.00563	0.00418	0.00363
Tajima’s D statistic	− .0.78621	− 1.7346	− 0.3827	− 1.8317	− 1.74248 (Not significant; P < 0.05)
Fu and Li’s D test statistic	− .0.34123	− 1.7346	− 0.3827	− 1.8317	− .1.74248 (Not significant; P < 0.05)
No of polymorphic sites	2	1	1	2	6