Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Jan 11;13(3):jkac321. doi: 10.1093/g3journal/jkac321

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023. Published by Oxford University Press on behalf of the Genetics Society of America.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Fig. 2. — a) A dot plot between the DNA sequences of Han1 and T2T-CHM13 shows the high collinearity of every chromosome between the two genomes. The segments in purple color mean sequences in T2T-CHM13 and Han1 are in the same direction, whereas the blue color means they are in the reverse direction. b) A gene order plot, where genes were numbered from 1 to N in order along all chromosomes of both T2T-CHM13 and Han1, and color-coded according to sequence identity. For both a) and b), the $X$ axis is the T2T-CHM13 reference, and the $Y$ axis is Han1. Chromosomes are in the order of 1 to 22, X, Y, and M. The alignments and dot plot were produced using the MUMmer4 software, and the gene order plot was generated by Liftofftools v0.2.0.