TABLE 3.

Overall summary of transcriptome annotation and expression in each sex.

	No. of contigs expressed in ovaries (percentage of total contigs)	Summed TPM in ovaries (percentage of total expression)	No. of contigs expressed in testes (percentage of total contigs)	Summed TPM in testes (percentage of total expression)
Endogenous gene	51,647 (17.4%)	678,366 (67.8%)	58,041 (13.3%)	513,783 (51.4%)
Autonomous TE	26,358 (8.9%)	17,890 (1.8%)	41,421 (9.5%)	43,694 (4.4%)
Non-autonomous TE	1,700 (0.6%)	5,538 (0.6%)	2,348 (0.5%)	12,151 (1.2%)
Gene/autonomous TE	722 (0.2%)	2,618 (0.3%)	1,001 (0.2%)	5,748 (0.6%)
Gene/non-autonomous TE	168 (0.1%)	2,779 (0.3%)	189 (0.0%)	1,073 (0.1%)
Unannotated	215,508 (72.8%)	292,828 (29.3%)	334,533 (76.5%)	423,550 (42.4%)
Total	296,103 (100%)	1,000,029 (100%)	437,533 (100%)	999,999 (100%)