Supplementary Table 1: Alzheimer's disease associated variants from genome-wide association studies. ,,,,,,,,,,,,,
"Locus: Loci were defined by merging overlapping regions +/- 500kb around each lead variant from each study to obtain non-overlapping regions; Locus LD: LD pruning (EUR GRCh37 reference, r2 = 0.1, MAF = 0.001) using LDlink SNPclip was employed to define independent variants in each locus; A1: reference allele; A2: alternate (effect) allele; FRQ: reported allele frequncy; gnomAD gloabl AF: global population allele frequency from gnomAD",,,,,,,,,,,,,
Locus,cytoband,Locus LD,Gene,SNP,CHR,BP,A1,A2,FRQ,gnomAD global AF,OR,P,study
chr1:485377-1485377,1p36.33,1,AGRN,rs113020870,1,985377,C,T,0.0041,0.00231392,1.05,3.83E-08,Wightman
chr1:109388432-110388432,1p13.3,2,SORT1,rs141749679,1,109888432,T,C,0.004,0.0029942,1.38,7.50E-09,Bellenguez
chr1:160655392-161655392,1q23.3,3,ADAMTS4,rs4575098,1,161155392,G,A,0.228,0.191792,1.02,1.90E-10,Jansen
chr1:207192049-208302552,1q32.2,4,CR1,rs6656401,1,207692049,G,A,0.197,0.862182,1.18,5.70E-24,Lambert
chr1:207192049-208302552,1q32.2,4,CR1,rs6656401,1,207692049,G,A,0.216,0.862182,1.15,1.37E-29,Marioni
chr1:207192049-208302552,1q32.2,4,CR1,rs679515,1,207750568,C,T,0.18,0.862653,1.02,2.42E-25,Wightman
chr1:207192049-208302552,1q32.2,4,CR1,rs679515,1,207750568,C,T,0.188,0.862653,1.13,7.20E-46,Bellenguez
chr1:207192049-208302552,1q32.2,4,CR1,rs2093760,1,207786828,G,A,0.192,0.73385,1.02,6.84E-19,Jansen
chr1:207192049-208302552,1q32.2,4,CR1,rs4844610,1,207802552,C,A,0.187,0.862288,1.17,3.60E-24,Kunkle
chr2:9199011-10199011,2p25.1,5,ADAM17,rs72777026,2,9699011,A,G,0.144,0.189885,1.06,2.70E-08,Bellenguez
chr2:37031939-38031939,2p22.2,6,PRKD3,rs17020490,2,37531939,T,C,0.145,0.182259,1.06,3.30E-09,Bellenguez
chr2:105735428-106866056,2q12.2,7,NCK2,rs115186657,2,106235428,A,C,0.0035,0.00178355,1.06,1.33E-08,Wightman
chr2:105735428-106866056,2q12.2,7,NCK2,rs143080277,2,106366056,T,C,0.005,0.00280416,1.47,2.10E-13,Bellenguez
chr2:127391427-128392810,2q14.3,8,BIN1,rs4663105,2,127891427,A,C,0.411,0.462149,1.03,1.45E-44,Jansen
chr2:127391427-128392810,2q14.3,8,BIN1,rs4663105,2,127891427,A,C,0.41,0.462149,1.02,3.92E-58,Wightman
chr2:127391427-128392810,2q14.3,8,BIN1,rs6733839,2,127892810,C,T,0.409,0.395051,1.22,6.90E-44,Lambert
chr2:127391427-128392810,2q14.3,8,BIN1,rs6733839,2,127892810,C,T,0.407,0.395051,1.2,2.10E-44,Kunkle
chr2:127391427-128392810,2q14.3,8,BIN1,rs6733839,2,127892810,C,T,0.395,0.395051,1.2,2.37E-69,Marioni
chr2:127391427-128392810,2q14.3,8,BIN1,rs6733839,2,127892810,C,T,0.389,0.395051,1.17,6.10E-118,Bellenguez
chr2:203243439-204243439,2q33.2,9,WDR12,rs139643391,2,203743439,TC,T,0.131,0.0908512,0.94,1.10E-08,Bellenguez
chr2:233481912-234582577,2q37.1,10,INPP5D,rs10933431,2,233981912,C,G,0.223,0.645682,0.91,3.40E-09,Kunkle
chr2:233481912-234582577,2q37.1,10,INPP5D,rs10933431,2,233981912,C,G,0.244,0.645682,0.985,7.62E-10,Jansen
chr2:233481912-234582577,2q37.1,10,INPP5D,rs10933431,2,233981912,C,G,0.234,0.645682,0.93,3.60E-18,Bellenguez
chr2:233481912-234582577,2q37.1,10,INPP5D,rs35349669,2,234068476,C,T,0.488,0.368391,1.08,3.20E-08,Lambert
chr2:233481912-234582577,2q37.1,10,INPP5D,rs35349669,2,234068476,C,T,0.512,0.368391,1.07,3.58E-11,Marioni
chr2:233481912-234582577,2q37.1,10,INPP5D,rs7597763,2,234082577,A,C,0.45,0.345228,1.01,4.65E-09,Wightman
chr3:56726150-57726150,3p14.3,11,HESX1,rs184384746,3,57226150,C,T,0.00111,0.00105371,1.22,1.24E-08,Jansen
chr3:154287511-155301978,3q25.2,12,MME,rs16824536,3,154787511,G,A,0.054,0.107111,0.92,3.60E-08,Bellenguez
chr3:154287511-155301978,3q25.2,13,MME,rs61762319,3,154801978,A,G,0.026,0.0172227,1.16,2.20E-11,Bellenguez
chr4:487343-1487343,4p16.3,14,IDUA,rs3822030,4,987343,T,G,0.429,0.472703,0.95,8.30E-12,Bellenguez
chr4:10514822-11526028,4p16.1,15,CLNK,rs4504245,4,11014822,G,A,0.21,0.836088,1.01,5.23E-12,Wightman
chr4:10514822-11526028,4p16.1,15,CLNK,rs6846529,4,11025131,T,C,0.283,0.711626,1.07,2.20E-17,Bellenguez
chr4:10514822-11526028,4p16.1,15,CLNK,rs6448453,4,11026028,G,A,0.262,0.790216,1.01,1.98E-09,Jansen
chr4:39698846-40698846,4p14,16,RHOH,rs2245466,4,40198846,C,G,0.343,0.691888,1.05,1.20E-09,Bellenguez
chr5:14224413-15224413,5p15.2,17,ANKH,rs112403360,5,14724413,T,A,0.073,0.079798,1.09,2.30E-09,Bellenguez
chr5:85723195-86723195,5q14.3,18,COX7C,rs62374257,5,86223195,T,C,0.23,0.176786,1.07,1.40E-15,Bellenguez
chr5:87723420-88723420,5q14.3,19,MEF2C,rs190982,5,88223420,A,G,0.408,0.731869,0.93,3.20E-08,Lambert
chr5:149932388-150932388,5q33.1,20,TNIP1,rs871269,5,150432388,C,T,0.32,0.365823,0.992,1.37E-09,Wightman
chr5:149932388-150932388,5q33.1,20,TNIP1,rs871269,5,150432388,C,T,0.326,0.365823,0.96,8.70E-09,Bellenguez
chr5:156026331-157026331,5q33.3,21,HAVCR2,rs6891966,5,156526331,G,A,0.23,0.788058,0.992,7.91E-10,Wightman
chr5:179128150-180128150,5q35.3,22,RASGEF1C,rs113706587,5,179628150,G,A,0.11,0.0861354,1.09,2.20E-16,Bellenguez
chr6:32075406-33083813,6p21.32,23,HLA-DRB1,rs9271058,6,32575406,T,A,0.27,0.733237,1.1,1.40E-11,Kunkle
chr6:32075406-33083813,6p21.32,23,HLA-DQA1,rs9271192,6,32578530,A,C,0.276,0.734454,1.11,2.90E-12,Lambert
chr6:32075406-33083813,6p21.32,24,HLA-DQA1,rs6605556,6,32583099,A,G,0.161,0.139967,0.91,7.10E-20,Bellenguez
chr6:32075406-33083813,6p21.32,24,HLA-DQA1,rs6931277,6,32583357,A,T,0.156,0.139874,0.981,7.35E-11,Jansen
chr6:32075406-33083813,6p21.32,24,HLA-DQA1,rs1846190,6,32583813,G,A,0.3,0.268392,0.987,2.66E-14,Wightman
chr6:40442196-41654650,6p21.1,25,UNC5CL,rs187370608,6,40942196,G,A,0.00172,0.00152925,1.26,1.45E-16,Jansen
chr6:40442196-41654650,6p21.1,25,UNC5CL,rs187370608,6,40942196,G,A,0.003,0.00152925,1.16,1.26E-25,Wightman
chr6:40442196-41654650,6p21.1,26,UNC5CL,rs10947943,6,41004093,G,A,0.142,0.11677,0.94,1.10E-09,Bellenguez
chr6:40442196-41654650,6p21.1,25,OARD1,rs114812713,6,41034000,G,C,0.03,0.0134928,1.32,2.10E-13,Kunkle
chr6:40442196-41654650,6p21.1,27,TREM2,rs143332484,6,41129207,C,T,0.013,0.00859818,1.41,2.80E-25,Bellenguez
chr6:40442196-41654650,6p21.1,25,TREM2,rs75932628,6,41129252,C,T,0.008,0.00152857,2.08,2.70E-15,Kunkle
chr6:40442196-41654650,6p21.1,25,TREM2,rs75932628,6,41129252,C,T,0.003,0.00152857,2.39,2.50E-37,Bellenguez
chr6:40442196-41654650,6p21.1,28,TREML2,rs60755019,6,41149008,A,G,0.004,0.0578283,1.55,2.10E-08,Bellenguez
chr6:40442196-41654650,6p21.1,26,TREML2,rs9381040,6,41154650,C,T,0.353,0.292515,0.942,1.55E-08,Marioni
chr6:46931284-48052180,6p12.3,29,CD2AP,rs9473117,6,47431284,A,C,0.28,0.232244,1.09,1.20E-10,Kunkle
chr6:46931284-48052180,6p12.3,29,CD2AP,rs9381563,6,47432637,T,C,0.344,0.583942,1.08,5.83E-14,Marioni
chr6:46931284-48052180,6p12.3,29,CD2AP,rs9381563,6,47432637,T,C,0.356,0.583942,1.01,1.99E-10,Jansen
chr6:46931284-48052180,6p12.3,29,CD2AP,rs7767350,6,47485126,C,T,0.271,0.224097,1.08,7.90E-22,Bellenguez
chr6:46931284-48052180,6p12.3,29,CD2AP,rs10948363,6,47487762,A,G,0.266,0.224589,1.1,5.20E-11,Lambert
chr6:46931284-48052180,6p12.3,29,CD2AP,rs9369716,6,47552180,A,T,0.27,0.219996,1.01,1.70E-17,Wightman
chr6:114112895-115112895,6q22.1,30,HS3ST5,rs785129,6,114612895,C,T,0.35,0.670335,1.04,2.40E-09,Bellenguez
chr7:7356894-8744012,7p21.3,31,UMAD1,rs6943429,7,7856894,C,T,0.42,0.573761,1.05,1.00E-10,Bellenguez
chr7:7356894-8744012,7p21.3,32,ICA1,rs10952097,7,8244012,C,T,0.114,0.785313,1.07,6.80E-09,Bellenguez
chr7:11768758-12769593,7p21.3,33,TMEM106B,rs5011436,7,12268758,A,C,0.41,0.491712,0.993,2.70E-09,Wightman
chr7:11768758-12769593,7p21.3,33,TMEM106B,rs13237518,7,12269593,C,A,0.411,0.500383,0.96,4.90E-11,Bellenguez
chr7:27668746-28668746,7p15.1,34,JAZF1,rs1160871,7,28168746,GTCTT,G,0.222,0.4076,0.95,9.80E-09,Bellenguez
chr7:37341534-38383793,7p14.1,35,GPR141,rs2718058,7,37841534,A,G,0.373,0.389829,0.93,4.80E-09,Lambert
chr7:37341534-38383793,7p14.1,35,EPDR1,rs6966331,7,37883793,C,T,0.349,0.538513,0.96,4.60E-10,Bellenguez
chr7:54441328-55441328,7p11.2,36,SEC61G,rs76928645,7,54941328,C,T,0.103,0.0824716,0.93,1.60E-10,Bellenguez
chr7:99432049-100591795,7q22.1,37,SPDYE3,rs7384878,7,99932049,T,C,0.31,0.719455,0.989,9.41E-16,Wightman
chr7:99432049-100591795,7q22.1,37,SPDYE3,rs7384878,7,99932049,T,C,0.31,0.719455,0.92,1.10E-26,Bellenguez
chr7:99432049-100591795,7q22.1,37,PILRA,rs1859788,7,99971834,G,A,0.324,0.719668,0.982,1.80E-15,Jansen
chr7:99432049-100591795,7q22.1,37,ZCWPW1,rs1476679,7,100004446,T,C,0.287,0.774949,0.91,5.60E-10,Lambert
chr7:99432049-100591795,7q22.1,37,ZCWPW1,rs1476679,7,100004446,T,C,0.27,0.774949,0.911,9.93E-19,Marioni
chr7:99432049-100591795,7q22.1,37,NYAP1,rs12539172,7,100091795,C,T,0.303,0.750097,0.92,9.30E-10,Kunkle
chr7:142599133-143610762,7q34,38,EPHA1,rs10808026,7,143099133,C,A,0.199,0.186031,0.9,1.30E-10,Kunkle
chr7:142599133-143610762,7q34,38,EPHA1,rs10808026,7,143099133,C,A,0.204,0.186031,0.911,1.13E-14,Marioni
chr7:142599133-143610762,7q35,38,EPHA1,rs3935067,7,143104331,G,C,0.38,0.251917,1.01,4.69E-11,Wightman
chr7:142599133-143610762,7q35,38,EPHA1,rs7810606,7,143108158,C,T,0.485,0.423239,0.986,2.89E-11,Jansen
chr7:142599133-143610762,7q35,38,EPHA1,rs11771145,7,143110762,G,A,0.338,0.419696,0.9,1.10E-13,Lambert
chr7:142599133-143610762,7q35,38,EPHA1,rs11771145,7,143110762,G,A,0.348,0.419696,0.95,3.30E-14,Bellenguez
chr7:145450029-146450029,7q35,39,CNTNAP2,rs114360492,7,145950029,C,T,0.00154,0.0130925,1.2,2.10E-09,Jansen
chr8:11202122-12202122,8p23.1,40,CTSB,rs1065712,8,11702122,G,C,0.053,0.0530979,1.09,1.90E-09,Bellenguez
chr8:26695121-27967686,8p21.2,41,PTK2B,rs28834970,8,27195121,T,C,0.366,0.311515,1.1,7.40E-14,Lambert
chr8:26695121-27967686,8p21.2,41,PTK2B,rs73223431,8,27219987,C,T,0.367,0.311448,1.1,6.30E-14,Kunkle
chr8:26695121-27967686,8p21.2,41,PTK2B,rs73223431,8,27219987,C,T,0.369,0.311448,1.07,4.00E-22,Bellenguez
chr8:26695121-27967686,8p21.1,42,CLU,rs4236673,8,27464929,G,A,0.389,0.700579,0.896,1.07E-28,Marioni
chr8:26695121-27967686,8p21.1,42,CLU,rs4236673,8,27464929,G,A,0.378,0.700579,0.98,1.48E-19,Jansen
chr8:26695121-27967686,8p21.1,42,CLU,rs11787077,8,27465312,C,T,0.392,0.573665,0.91,1.70E-44,Bellenguez
chr8:26695121-27967686,8p21.1,42,CLU,rs1532278,8,27466315,C,T,0.39,0.680899,0.988,1.57E-22,Wightman
chr8:26695121-27967686,8p21.1,42,CLU,rs9331896,8,27467686,T,C,0.379,0.569712,0.86,2.80E-25,Lambert
chr8:26695121-27967686,8p21.1,42,CLU,rs9331896,8,27467686,T,C,0.387,0.569712,0.88,4.60E-24,Kunkle
chr8:144608151-145658607,8q24.3,43,OPLAH,rs61732533,8,145108151,G,A,0.05,0.0329443,1.02,3.14E-09,Wightman
chr8:144608151-145658607,8q24.3,44,SHARPIN,rs34173062,8,145158607,G,A,0.081,0.0550397,1.13,1.70E-16,Bellenguez
chr9:107165978-108165978,9q31.1,100,ABCA1,rs1800978,9,107665978,C,G,0.13,0.097707,1.06,1.60E-09,Bellenguez
chr10:11217397-12220308,10p14,45,USP6NL,rs11257238,10,11717397,T,C,0.361,0.301525,1.01,1.04E-08,Jansen
chr10:11217397-12220308,10p14,45,USP6NL,rs7912495,10,11718713,A,G,0.46,0.427167,1.01,7.68E-15,Wightman
chr10:11217397-12220308,10p14,45,USP6NL,rs7912495,10,11718713,A,G,0.462,0.427167,1.06,9.70E-19,Bellenguez
chr10:11217397-12220308,10p14,45,ECHDC3,rs7920721,10,11720308,A,G,0.39,0.319341,1.08,1.80E-11,Kunkle
chr10:11217397-12220308,10p14,45,ECHDC3,rs7920721,10,11720308,A,G,0.393,0.319341,1.07,3.17E-11,Marioni
chr10:61238152-62284928,10q21.2,46,ANK3,rs7902657,10,61738152,G,T,0.54,0.50436,1.01,3.68E-08,Wightman
chr10:61238152-62284928,10q21.2,46,ANK3,rs7068231,10,61784928,G,T,0.403,0.616139,0.95,3.30E-13,Bellenguez
chr10:81753984-82753984,10q23.1,47,TSPAN14,rs6586028,10,82253984,T,C,0.196,0.845293,0.93,2.00E-19,Bellenguez
chr10:97526407-98526407,10q24.1,48,BLNK,rs6584063,10,98026407,A,G,0.043,0.955223,0.89,6.70E-11,Bellenguez
chr10:123672912-124672912,10q26.13,49,PLEKHA1,rs7908662,10,124172912,A,G,0.467,0.497692,0.96,2.60E-09,Bellenguez
chr11:46880340-48057871,11p11.2,50,SPI1,rs3740688,11,47380340,T,G,0.448,0.604291,0.92,5.40E-13,Kunkle
chr11:46880340-48057871,11p11.2,50,SPI1,rs3740688,11,47380340,G,T,0.54,0.604291,1.01,8.78E-09,Wightman
chr11:46880340-48057871,11p11.2,50,SPI1,rs10437655,11,47391948,G,A,0.399,0.35419,1.06,5.30E-14,Bellenguez
chr11:46880340-48057871,11p11.2,50,PSMC3,rs12292911,11,47449072,G,A,0.369,0.314447,1.06,3.30E-09,Marioni
chr11:46880340-48057871,11p11.2,50,CELF1,rs10838725,11,47557871,T,C,0.316,0.224386,1.08,1.10E-08,Lambert
chr11:59423508-60521948,11q12.2,51,MS4A6A,rs983392,11,59923508,A,G,0.403,0.274674,0.9,6.10E-16,Lambert
chr11:59423508-60521948,11q12.2,51,MS4A6A,rs7933202,11,59936926,A,C,0.391,0.261969,0.89,1.90E-19,Kunkle
chr11:59423508-60521948,11q12.2,51,MS4A4A,rs2081545,11,59958380,C,A,0.382,0.290974,0.982,1.11E-15,Jansen
chr11:59423508-60521948,11q12.2,51,MS4A4A,rs1582763,11,60021948,G,A,0.328,0.260865,0.916,1.01E-18,Marioni
chr11:59423508-60521948,11q12.2,51,MS4A4A,rs1582763,11,60021948,G,A,0.38,0.260865,0.985,3.40E-33,Wightman
chr11:59423508-60521948,11q12.2,51,MS4A4A,rs1582763,11,60021948,G,A,0.371,0.260865,0.91,3.70E-42,Bellenguez
chr11:85276544-86368640,11q14.2,52,PICALM,rs867611,11,85776544,A,G,0.317,0.730376,0.98,1.48E-18,Jansen
chr11:85276544-86368640,11q14.2,52,PICALM,rs561655,11,85800279,A,G,0.35,0.695311,0.986,1.24E-26,Wightman
chr11:85276544-86368640,11q14.2,52,PICALM,rs10792832,11,85867875,G,A,0.358,0.700249,0.87,9.30E-26,Lambert
chr11:85276544-86368640,11q14.2,52,PICALM,rs10792832,11,85867875,G,A,0.333,0.700249,0.884,5.08E-36,Marioni
chr11:85276544-86368640,11q14.2,52,EED,rs3851179,11,85868640,C,T,0.356,0.694928,0.88,6.00E-25,Kunkle
chr11:85276544-86368640,11q14.2,52,EED,rs3851179,11,85868640,C,T,0.358,0.694928,0.9,3.00E-48,Bellenguez
chr11:120853077-121935587,11q24.1,53,SORL1,rs74685827,11,121353077,T,G,0.019,0.0176489,1.19,2.80E-11,Bellenguez
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.039,0.0645089,0.77,9.70E-15,Lambert
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.04,0.0645089,0.8,2.90E-12,Kunkle
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.0345,0.0645089,0.808,4.58E-17,Marioni
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.0441,0.0645089,0.965,8.12E-12,Jansen
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.04,0.0645089,0.977,1.33E-13,Wightman
chr11:120853077-121935587,11q24.1,54,SORL1,rs11218343,11,121435587,T,C,0.039,0.0645089,0.84,1.40E-21,Bellenguez
chr12:113219788-114219788,12q24.13,101,TPCN1,rs6489896,12,113719788,T,C,0.076,0.104956,1.08,1.80E-09,Bellenguez
chr14:52798853-53900629,14q22.1,55,FERMT2,rs7146179,14,53298853,G,A,0.11,0.80352,1.01,6.99E-11,Wightman
chr14:52798853-53900629,14q22.1,55,FERMT2,rs17125924,14,53391680,A,G,0.093,0.0951288,1.14,1.40E-09,Kunkle
chr14:52798853-53900629,14q22.1,55,FERMT2,rs17125924,14,53391680,A,G,0.0994,0.0951288,1.12,1.34E-11,Marioni
chr14:52798853-53900629,14q22.1,55,FERMT2,rs17125924,14,53391680,A,G,0.089,0.0951288,1.1,8.30E-16,Bellenguez
chr14:52798853-53900629,14q22.1,55,FERMT2,rs17125944,14,53400629,T,C,0.092,0.0938059,1.14,7.90E-09,Lambert
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs10498633,14,92926952,G,T,0.217,0.188314,0.91,5.50E-09,Lambert
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs7401792,14,92931261,A,G,0.371,0.523893,1.04,4.80E-08,Bellenguez
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs12881735,14,92932828,T,C,0.221,0.193773,0.92,7.40E-09,Kunkle
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs12590654,14,92938855,G,A,0.347,0.349176,0.925,8.21E-12,Marioni
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs12590654,14,92938855,G,A,0.336,0.349176,0.985,1.32E-10,Jansen
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs12590654,14,92938855,G,A,0.33,0.349176,0.989,6.63E-17,Wightman
chr14:92426952-93438855,14q32.12,56,SLC24A4,rs12590654,14,92938855,G,A,0.328,0.349176,0.93,4.20E-21,Bellenguez
chr14:105728095-107621607,14q32.33,57,TMEM121,rs7157106,14,106228095,A,G,0.64,0.499359,0.952,2.00E-08,Bellenguez
chr14:105728095-107621607,14q32.33,58,TMEM121,rs10131280,14,107121607,G,A,0.133,0.15636,0.94,4.30E-10,Bellenguez
chr15:50494011-51501534,15q21.2,59,SPPL2A,rs8025980,15,50994011,A,G,0.345,0.379069,0.96,1.30E-08,Bellenguez
chr15:50494011-51501534,15q21.2,59,SPPL2A,rs59685680,15,51001534,T,G,0.247,0.185865,0.933,9.17E-09,Marioni
chr15:58522615-59557023,15q21.3,60,ADAM10,rs442495,15,59022615,T,C,0.354,0.487648,0.986,1.22E-09,Jansen
chr15:58522615-59557023,15q21.3,60,ADAM10,rs593742,15,59045774,A,G,0.295,0.336907,0.93,6.80E-09,Kunkle
chr15:58522615-59557023,15q21.3,60,ADAM10,rs593742,15,59045774,A,G,0.298,0.336907,0.933,2.78E-11,Marioni
chr15:58522615-59557023,15q21.3,60,MINDY2,rs602602,15,59057023,T,A,0.3,0.30735,0.991,6.22E-15,Wightman
chr15:58522615-59557023,15q21.3,60,MINDY2,rs602602,15,59057023,T,A,0.28,0.30735,0.94,2.10E-15,Bellenguez
chr15:63069902-64923506,15q22.2,61,APH1B,rs117618017,15,63569902,C,T,0.125,0.0881826,1.02,3.44E-08,Jansen
chr15:63069902-64923506,15q22.2,61,APH1B,rs117618017,15,63569902,C,T,0.13,0.0881826,1.01,7.00E-12,Wightman
chr15:63069902-64923506,15q22.2,61,APH1B,rs117618017,15,63569902,C,T,0.144,0.0881826,1.11,2.20E-25,Bellenguez
chr15:63069902-64923506,15q22.31,62,SNX1,rs3848143,15,64423506,A,G,0.22,0.742567,1.05,8.40E-11,Bellenguez
chr15:78729199-79729199,15q25.1,63,CTSH,rs12592898,15,79229199,G,A,0.133,0.8408,0.94,4.20E-09,Bellenguez
chr16:19308163-20308163,16p12.3,64,IQCK,rs7185636,16,19808163,T,C,0.18,0.347153,0.92,2.40E-08,Kunkle
chr16:29521402-30521402,16p11.2,65,DOC2A,rs1140239,16,30021402,C,T,0.379,0.329267,0.94,2.60E-13,Bellenguez
chr16:30622571-31633100,16p11.2,66,BCKDK,rs889555,16,31122571,C,T,0.322,0.322264,0.943,4.11E-08,Marioni
chr16:30622571-31633100,16p11.2,66,BCKDK,rs889555,16,31122571,C,T,0.281,0.322264,0.95,2.00E-11,Bellenguez
chr16:30622571-31633100,16p11.2,66,KAT8,rs59735493,16,31133100,G,A,0.298,0.36075,0.987,3.73E-08,Jansen
chr16:70194000-71194000,16q22.1,67,IL34,rs4985556,16,70694000,C,A,0.0876,0.0770712,1.09,3.67E-08,Marioni
chr16:70194000-71194000,16q22.1,67,IL34,rs4985556,16,70694000,C,A,0.115,0.0770712,1.07,6.00E-10,Bellenguez
chr16:78855857-80108408,16q23.2,68,WWOX,rs62039712,16,79355857,G,A,0.116,0.0780142,1.16,3.70E-08,Kunkle
chr16:78855857-80108408,16q23.2,69,MAF,rs450674,16,79608408,T,C,0.373,0.309999,0.96,3.20E-08,Bellenguez
chr16:81273003-82442028,16q23.3,70,PLCG2,rs12446759,16,81773003,A,G,0.403,0.530218,0.95,1.20E-13,Bellenguez
chr16:81273003-82442028,16q23.3,70,PLCG2,rs12444183,16,81773209,G,A,0.343,0.539481,0.947,3.15E-08,Marioni
chr16:81273003-82442028,16q23.3,71,PLCG2,rs72824905,16,81942028,C,G,0.008,0.00490727,0.74,8.50E-12,Bellenguez
chr16:85954210-86954210,16q24.1,72,FOXF1,rs16941239,16,86454210,T,A,0.029,0.0788885,1.13,1.30E-08,Bellenguez
chr16:89670095-90670095,16q24.3,73,PRDM7,rs56407236,16,90170095,G,A,0.069,0.0641614,1.11,6.50E-15,Bellenguez
chr17:1131341-2131341,17p13.3,74,WDR81,rs35048651,17,1631341,TGAG,T,0.214,0.190107,1.06,7.70E-11,Bellenguez
chr17:4469940-5638980,17p13.2,75,ZFP3,rs7209200,17,4969940,C,T,0.33,0.331959,1.01,3.18E-08,Wightman
chr17:4469940-5638980,17p13.2,75,SCIMP,rs7225151,17,5137047,G,A,0.118,0.153066,1.1,6.06E-12,Marioni
chr17:4469940-5638980,17p13.2,75,SCIMP,rs7225151,17,5137047,G,A,0.124,0.153066,1.08,4.10E-13,Bellenguez
chr17:4469940-5638980,17p13.2,75,SCIMP,rs113260531,17,5138980,G,A,0.126,0.147256,1.02,7.91E-10,Jansen
chr17:17559454-18559454,17p11.2,76,MYO15A,rs2242595,17,18059454,G,A,0.112,0.16837,0.94,1.10E-09,Bellenguez
chr17:41930244-42942344,17q21.31,77,GRN,rs5848,17,42430244,C,T,0.289,0.417906,1.07,2.40E-20,Bellenguez
chr17:41930244-42942344,17q21.31,77,FAM171A2,rs708382,17,42442344,T,C,0.39,0.408536,1.01,1.98E-09,Wightman
chr17:44356641-45356641,17q21.31,78,WNT3,rs199515,17,44856641,C,G,0.219,0.855204,0.94,9.30E-13,Bellenguez
chr17:46797297-47950775,17q21.32,79,ABI3,rs616338,17,47297297,C,T,0.012,0.993619,1.32,2.80E-14,Bellenguez
chr17:46797297-47950775,17q21.33,80,ZNF652,rs28394864,17,47450775,G,A,0.453,0.407807,1.01,1.68E-08,Jansen
chr17:46797297-47950775,17q21.33,80,ZNF652,rs28394864,17,47450775,G,A,0.46,0.407807,1.01,4.90E-10,Wightman
chr17:55909089-56910041,17q22,81,TSPOAP1,rs2632516,17,56409089,G,C,0.46,0.510497,0.994,7.46E-10,Wightman
chr17:55909089-56910041,17q22,81,TSPOAP1,rs2526377,17,56410041,A,G,0.445,0.500128,0.95,1.60E-12,Bellenguez
chr17:61038148-62048918,17q23.3,82,CYB561,rs138190086,17,61538148,G,A,0.02,0.012363,1.3,5.30E-09,Kunkle
chr17:61038148-62048918,17q23.3,82,CYB561,rs138190086,17,61538148,G,A,0.0169,0.012363,1.25,1.95E-09,Marioni
chr17:61038148-62048918,17q23.3,83,ACE,rs6504163,17,61545779,T,C,0.39,0.699911,0.992,1.23E-09,Wightman
chr17:61038148-62048918,17q23.3,83,ACE,rs4277405,17,61548918,T,C,0.384,0.637162,0.94,8.80E-20,Bellenguez
chr18:55689459-56689459,18q21.31,102,ALPK2,rs76726049,18,56189459,T,C,0.0112,0.00894847,1.06,3.38E-08,Jansen
chr19:539323-2354258,19p13.3,84,CNN2,rs111278892,19,1039323,C,G,0.147,0.121601,1.02,6.67E-11,Jansen
chr19:539323-2354258,19p13.3,84,ABCA7,rs3752231,19,1043638,C,T,0.239,0.27261,1.09,4.37E-13,Marioni
chr19:539323-2354258,19p13.3,84,ABCA7,rs12151021,19,1050874,G,A,0.32,0.652529,1.01,2.81E-15,Wightman
chr19:539323-2354258,19p13.3,84,ABCA7,rs12151021,19,1050874,G,A,0.336,0.652529,1.1,1.60E-37,Bellenguez
chr19:539323-2354258,19p13.3,85,ABCA7,rs3752246,19,1056492,C,G,0.182,0.864596,1.15,3.10E-16,Kunkle
chr19:539323-2354258,19p13.3,85,ABCA7,rs4147929,19,1063443,G,A,0.19,0.865341,1.15,1.10E-15,Lambert
chr19:539323-2354258,19p13.3,86,KLF16,rs149080927,19,1854258,GC,G,0.48,NA,1.05,5.10E-10,Bellenguez
chr19:44851516-46741841,19q13.32,87,NECTIN2,rs41289512,19,45351516,C,G,0.03,0.0304528,2.5,6.70E-255,Marioni
chr19:44851516-46741841,19q13.32,87,NECTIN2,rs41289512,19,45351516,C,G,0.0359,0.0304528,1.23,1.46E-278,Jansen
chr19:44851516-46741841,19q13.32,87,APOE,rs429358,19,45411941,T,C,0.216,0.164436,3.32,0,Kunkle
chr19:44851516-46741841,19q13.32,87,APOE,rs429358,19,45411941,T,C,0.16,0.164436,2.28,1.00E-300,Wightman
chr19:44851516-46741841,19q13.32,87,APOE,rs429358,19,45411941,T,C,0.216,0.164436,3.32,0,Bellenguez
chr19:44851516-46741841,19q13.32,88,MEIOSIN,rs76320948,19,46241841,C,T,0.0308,0.0280627,1.04,4.08E-08,Jansen
chr19:48713504-49713504,19q13.33,89,MAMSTR,rs2452170,19,49213504,G,A,0.53,0.427309,1.01,1.72E-08,Wightman
chr19:49953317-50953317,19q13.33,90,SIGLEC11,rs9304690,19,50453317,C,T,0.24,0.183059,1.05,4.70E-09,Bellenguez
chr19:51227962-52237991,19q13.41,91,CD33,rs3865444,19,51727962,C,A,0.299,0.254387,0.986,5.15E-09,Jansen
chr19:51227962-52237991,19q13.41,91,CD33,rs12459419,19,51728477,C,T,0.336,0.254789,0.936,7.97E-09,Marioni
chr19:51227962-52237991,19q13.41,91,CD33,rs1354106,19,51737991,T,G,0.37,0.37844,0.989,2.21E-10,Wightman
chr19:54271451-55325174,19q13.42,92,LILRB2,rs587709,19,54771451,T,C,0.325,0.375986,1.05,3.60E-11,Bellenguez
chr19:54271451-55325174,19q13.42,93,LILRA5,rs1761461,19,54825174,A,C,0.49,0.591991,1.01,1.56E-09,Wightman
chr20:1-893978,20p13,94,RBCK1,rs1358782,20,393978,G,A,0.246,0.806968,0.95,1.60E-08,Bellenguez
chr20:54483075-55518260,20q13.2,95,CSTF1,rs6069736,20,54983075,C,T,0.088,0.113146,0.895,1.99E-10,Marioni
chr20:54483075-55518260,20q13.2,95,CASS4,rs6069737,20,54995699,C,T,0.083,0.0741977,0.981,6.73E-16,Wightman
chr20:54483075-55518260,20q13.2,95,CASS4,rs6024870,20,54997568,G,A,0.088,0.0743549,0.88,3.50E-08,Kunkle
chr20:54483075-55518260,20q13.2,95,CASS4,rs6014724,20,54998544,A,G,0.095,0.105208,0.977,5.38E-10,Jansen
chr20:54483075-55518260,20q13.2,95,CASS4,rs6014724,20,54998544,A,G,0.09,0.105208,0.89,4.10E-21,Bellenguez
chr20:54483075-55518260,20q13.31,95,CASS4,rs7274581,20,55018260,T,C,0.083,0.110399,0.88,2.50E-08,Lambert
chr20:61874441-62874441,20q13.33,96,SLC2A4RG,rs6742,20,62374441,C,T,0.221,0.768634,0.95,2.60E-09,Bellenguez
chr21:26769932-28656856,21q21.3,98,APP,rs2154481,21,27473875,T,C,0.476,0.392472,0.95,1.00E-12,Bellenguez
chr21:26769932-28656856,21q21.3,98,APP,rs2154482,21,27520931,G,T,0.44,0.524756,0.993,7.66E-10,Wightman
chr21:26769932-28656856,21q21.3,99,ADAMTS1,rs2830489,21,28148191,C,T,0.281,0.209936,0.95,1.70E-10,Bellenguez
chr21:26769932-28656856,21q21.3,99,ADAMTS1,rs2830500,21,28156856,C,A,0.308,0.234172,0.93,2.60E-08,Kunkle