Dataset EV19. Comparision between eIF4E-Capping and eIF4E-AS targets in U2OS datasets Names total elements AS Capping 6 AGRN MDM2 TUBB6 CATSPER1 CTNNB1 ERCC2 Capping 89 AL365181.2 RP11-500C11.3 RP11-15A1.3 ZNF45 MAP3K14-AS1 AL391730.2 AC006116.27 SPAG17 RP11-463I20.1 ABALON ZNF114 AC068134.8 RP11-352G18.2 ZSCAN5A PLXNA2 RP11-885L14.1 RP11-350N15.6 TGM2 RP11-1114I9.1 BDNF-AS RP11-670E13.5 PERM1 RP11-56B16.5 PUSL1 SAMD11 SLCO4A1-AS1 HCG4 TMEM120B NUP153 CTC-241F20.4 CPSF3L TNFSF8 RP11-78I14.1 CTD-2033D15.1 RP11-15A1.4 NQO2 TNFRSF14 B3GALT6 SLFNL1 eIF2B1 KRT15 CDK2 SRR RP11-611O2.5 IMPDH1P4 RPL12P14 HIST1H4I KIF1A AC006116.24 RPE65 RP13-895J2.6 RP3-395M20.8 eIF4AI NUDT6 MRPL20 CFLAR CTD-2012K14.3 DNMBP-AS1 CCDC148-AS1 NEAT RP13-895J2.3 MALAT1 RP11-55J15.2 FAM129B CCND1 ST13P12 RP11-69L16.4 RP11-334E6.3 LGALS8 TM4SF19-AS1 RP11-806L2.6 RP11-388M20.2 TRHDE RuvBL1 HMMR-AS1 MYC AP006621.9 COL27A1 CTD-2544N14.3 CYP24A1 MCL1 PIAS1 AC004510.3 RP11-178H8.7 CTD-2033D15.3 MAGEB17 BAIAP2L1 HRNR AS 758 DPM2 CLOCK PODNL1 DALRD3 CD44 COBLL1 VPS29 IFT74 DLG1 PNISR PSMA4 MAP4 ACTR3 PLPP4 GPHN TUBD1 CD34 POLR2G APBB2 INPP5F GCSH NEK11 IQGAP3 DFFB MEF2D GAPVD1 LINC01547 ARRB2 DPH5 COX5A CEP70 HERPUD2 SLC7A6 EIF6 CDC27 FAN1 SLC10A7 ADARB1 SOS1 IFT122 UBE2G1 POLK LRRC6 C1RL LINC01128 ATP9B TPX2 AGFG1 CCNI CLSTN1 KANSL2 GPSM2 PAIP1 EDIL3 EPB41 DDX11 ATP11B NUCKS1 ZEB1 MED4 TMEM255B COQ6 SMARCC2 PTPN18 HLTF AP1G1 TNC RNF170 HMG20B SMARCC1 C9orf85 GPR180 SYNE2 FHL3 RNF14 SEMA4D COX6C ZNF248 INIP PDLIM2 PPARA KRIT1 PIKFYVE PUM2 USP20 DUSP22 ANP32E TEAD1 NFASC AKR1E2 PCYT2 CACNB4 AC026412.1 SUGCT ENTPD6 METTL8 DHRS11 ARHGAP17 PCBP1-AS1 STK25 HDX ELP5 MAPKAPK5 ST7L GMPPB PSMA3 KLF7 CTNNBIP1 LAMP1 GINS1 HMGN2 METTL9 MFGE8 LYRM1 EIF4G3 NFATC4 DMKN ACTR10 IFI6 ACSL3 FRMD8 LIN54 CDK11A MSH5 NR1H3 RPS20 INTS14 PALLD STAG2 GOLGB1 CCDC66 MYRF ENOX2 LARP7 WDFY3 HNRNPA2B1 RPL21 JKAMP XPNPEP1 FOXK2 PHF6 DDX31 BIN3 DGUOK FGGY ZNF197 CSGALNACT2 PRDM2 TMCO3 CMIP CTDSPL2 SEM1 IQCA1 TMEM267 GNAS PLP2 DDB2 SHROOM1 GFPT2 DAP3 SPOP LRRC23 DDX47 PHF3 BCLAF1 RREB1 ITGB4 IKBKB BOK POLL UBE2C YTHDF3 ANXA8L1 EEF1D CCNY NPC2 EIF4A1 LPGAT1 CTIF FOXM1 HENMT1 TAF1B CHD2 HTT VAMP1 LEPROTL1 TRAPPC8 SEMA6C YWHAE RIC1 EMC1 PRC1 TRIM41 NIN ATP6V1H LCOR PI4KA HPCAL1 SLC15A4 OSBPL7 STAG1 PTK2 LAT COQ9 IQGAP1 TRAPPC9 DBI DNM1 MARF1 THBS3 PGAP2 EXD2 MGAT5 LATS1 ZBTB21 ZDHHC20 SKP2 ZNF75A FADS3 PFDN1 RPL34 TNFRSF11B MARK2 GMPPA EXO5 DENND1A MED1 RPS12 SEC14L1 RACGAP1 PABPC4 CLPTM1 HNRNPM NCF2 SEC31B PCGF6 D2HGDH MRPL48 HM13 AP3M1 TBL1XR1 SP140 OS9 POLR2J4 DNMT3B PSMD11 MTMR14 ZNF346 PACRGL ADGRL3 KHDRBS3 MICAL2 ZNF774 PPP2R5A ZIM2 COMMD7 SPTB RICTOR CAPRIN2 SF3B1 TRA2A RAI14 GNPDA2 MROH8 OGFOD2 DDX49 CD40 ABCC5 FANCI DYNC1LI2 SNAPC5 SEPTIN4 TRIP12 PRDM10 ZMYND8 UQCC1 AFDN RGL1 SYTL2 PAQR5 ATG10 RETREG3 RAD54L CASP8 RCOR3 CROCCP3 CDC45 SNRPN ABI2 ATAD3B CACNB1 FAM135A SETMAR QKI PLEC NRDC XPNPEP3 IL6ST LRRCC1 FGFR3 ANK1 PAFAH1B2 TCF12 IKZF4 WASHC2A LMBR1L GLYR1 SPATA20 MFAP5 FER GUF1 CDK7 PC ASNSD1 GSDMB STEAP2 SLC25A33 PPP2R1B TMEM234 MON2 WDR62 WDHD1 SLC30A6 RNF144A ZNF655 TRRAP ZWILCH PRKCD CCDC18 ZDHHC13 ACAD10 RBMS2 CBFA2T2 SCAMP1 PICALM PTS MARK3 BANP SERPINA1 MED14 HP1BP3 CCDC169 CEP192 C11orf58 BRD8 EGLN2 LTBR MRPS36 TCF4 SMC4 ROBO3 RAB34 PSG4 STAU1 AP3S1 ATP2C1 DDX21 FAM76A RGS19 HDAC11 DBF4 FKBP15 MTO1 AURKA DHX29 ADSL FAM86DP SLC15A3 NFATC2 SF3A3 REPS1 AHI1 SLC29A1 COP1 PIGF MTA1 UNC50 SYTL1 TENT2 PBRM1 PPP1R12A ATP5F1C INTS2 MLLT10 STRADA LINC01535 RRM1 PLAGL1 BICRAL NDUFAF5 CROCCP2 VAPA TMEM218 ARIH2 SOX6 SH3PXD2A FAM169A TMEM14B RAD17 PIK3C2A H2AFV RBBP6 ZSCAN31 ARNTL2 GNAO1 PHTF1 CDC16 KCNC4 PFN2 CHCHD7 ASPH UBA2 TARS UIMC1 PEG3 SBDS ATP7B YIPF6 MPDZ CLTCL1 PAX8-AS1 ZNF532 ZC3H11A ZNF185 AZIN1 TIPIN UBR5 RNPS1 EIF2AK1 LIN37 ETFA WT1 SLC2A8 VMP1 THAP9-AS1 ATAT1 TXNRD2 DDX42 PRMT9 IL4R SEC11A CUL9 DDHD1 AKIRIN1 DTNB NAV3 PPP6R3 BICD2 NUDT13 PPP6C SLC29A2 SLC25A13 PLEKHH3 SVIL MFSD14C PRPSAP2 EXOG MED15P9 PLGRKT AKAP10 CADPS2 NT5C2 NAF1 EME1 PHF13 MEIS1 FNTA TPTEP1 DLST LINC00960 GUCD1 RAD51 CIT ZNF615 SH3KBP1 ANK2 BLM PPIP5K2 RGP1 AKR7A2 ITGB1 CFAP44 NIT2 AGAP3 HPS1 SAMD8 CNOT8 MPI RNF10 PATJ XRCC3 FAM219B NRBP2 NOLC1 P2RX4 RSPO4 SLC50A1 LDHA ATP10D SNHG12 UGP2 BICD1 ABCA7 ZMIZ2 NPTN AC005394.2 DENND4B ETV4 NUTM2A-AS1 COL6A3 SNHG6 TPCN2 TRIM26 RABGAP1L GLI1 SYT14 TTC14 TCF20 MAPK8IP3 TNNT2 BARD1 SRM PARPBP HAUS4 XRRA1 MAD1L1 PPM1G HEMK1 NEK1 USP25 BOC NAA60 ITPR1 TXNRD3 HDAC10 RALGAPA1 ELMOD3 RPARP-AS1 RAD51C ZNF614 SNRPB AGER ATXN3 ZNF561 PRPS1 RUFY3 NDUFB5 OXR1 ATXN7 ABCC1 FIS1 ELF4 ATG4D SUN3 IL1B FOXN2 TPM1 EEF1AKMT2 CRIM1 SLC35G1 RBM27 FLNB PRKDC AFTPH CEP164 SAE1 ADD1 RBX1 METTL27 MYO18A DSN1 LARP4 ODF2L SYT7 LINC00667 KIAA0232 RPS25 GIPC1 ELL2 RPN2 CDK4 ITGA7 SUMF2 CBX5 SELENOM TSPAN4 GPR157 RNF168 AMDHD2 ZNF592 IDE MELK DPY19L2 MAP4K4 CNIH3 SCMH1 TMEM185A ACOT9 MTMR10 ALKBH6 ZNF266 PPIA CSNK1D TBCD TOM1 PHF12 CENPN AKR1A1 KHDRBS1 MAP2K4 SRSF5 UBE2K MORF4L1 CLNS1A TPD52L1 TXNL4A SLC4A7 PVT1 SEMA3B FKBP1B PPP6R2 SEPTIN10 TRERF1 KIF9 MFAP3L CHN1 TMLHE LIPT1 AP2S1 FAM120B SENP3 BNC2 ZNF530 OSBPL6 ZNF18 PFDN5 PARD3 BCL11B CCDC7 PHYH CCNT2 UNKL QTRT2 NF2 PIGK BCL2L13 PGS1 TECPR1 NUP50 PPARGC1B SNX14 WASF3 LONP2 DGCR2 GLP2R TTC27 SETD4 TRAPPC10 MYO18B TXLNA EPB41L5 ATXN2L RAB31 NIPA2 UBAP1 OGDHL GTF3C2 MR1 ANKS3 SLC25A39 BAX PTPN13 VPS35L FDPS CCDC62 SPIN1 AKT3 NCOA4 PIGT DROSHA EMC7 NAA40 CHD1L GOLT1B MROH1 TRIP10 SLC9B2 ITGB5 TMEM134 SPATA7 CCND3 ZNF611 NCOA6 PPP4R1 SIN3B ARHGAP11B RPL23AP82 EMSY SATB1 SCN5A ANXA5 PPM1D ANAPC10 TK2 STYXL1 ZMAT3 TRIM16 LIX1L KARS MED23 SNX7 SEC31A FAM131A HSD11B1L CHMP4C SMAD5 FAM49B PROCA1 KANSL1L YPEL2 MMP24 EIF4G1 PCNT APC2 LETMD1 STT3B HMBS USP3 GADD45B SPART FNBP1 ZBTB14 NSUN4 DCAF17 RDM1 CYP2R1 ARHGAP8 PUM1 TNRC6B CERS4 LINC00847 TNNT1 CCDC88A FAAP20 ZNF519 ZNF608 SLC2A11 NAP1L1 HELQ EIF2D TRAPPC6B DEPDC1 GLCCI1 ADGRG1 KIAA1109 CCDC74A CDC25A CTSC