Donor,Recipient,Gene Family,Support,MAD Support,Time Consistent?
n15,YN2018A,S,1000,1000,Yes
GX2013,n44,S,1000,1000,Yes
Rp3,Rm1,S,1000,1000,Yes
HKU3_7,GX2013,ORF7a,1000,1000,Yes
LYRa11,CpY11,ORF7a,1000,718,Yes
Rp3,n36,ORF3a,1000,1000,No
Rs4081,WIV16,ORF1ab,1000,1000,Yes
16BO133,n43,M,1000,1000,Yes
n44,RpS11,ORF6,980,1000,Yes
As6526,YN2013,M,972,758,Yes
Rs4231,Rs4247_147,M,969,751,Yes
Rs4081,As6526,ORF7a,951,899,Yes
YN2018C,Rs7327,ORF8,903,924,Yes
16BO133,n43,ORF3a,900,900,Yes
RpS11,Rp3,ORF3a,900,900,Yes
n40,YNLF_31C,ORF3a,900,900,Yes
HKU3_7,GX2013,ORF3a,900,900,Yes
RpS11,n44,ORF3a,900,900,Yes
CpY11,n34,ORF1ab,900,900,Yes
SC2018,n6,ORF1ab,900,900,Yes
F46,Rf4092,S,894,915,Yes
n44,Rp3,ORF6,880,900,Yes
WIV1,Rf4092,N,849,911,Yes
Rs4081,Rs4255,ORF7a,823,807,Yes
n49,n50,N,813,456,Yes
YN2018B,n22,ORF8,800,800,Within One Branch
CpY11,LYRa11,ORF6,800,800,Yes
Rs9401,Rs7327,S,777,745,Yes
Anlong-103,Rs4081,N,768,900,Yes
LYRa11,n19,S,729,721,Yes
n35,GX2013,M,718,200,Yes
n40,n47,N,715,<100,Within One Branch
n16,Rs9401,N,710,742,Yes
Rf4092,n10,ORF3a,700,700,Yes
n51,n47,ORF1ab,700,<100,No
YN2018A,n26,N,700,801,Within One Branch
n10,SC2018,N,700,700,Yes
Rs4255,F46,M,700,700,Yes
WIV1,YN2018B,ORF7a,679,728,Yes
Rs4255,As6526,N,670,569,Yes
n19,Rs4084,ORF3a,659,147,Yes
Rs4231,YN2018C,M,652,417,Yes
Rs7327,n14,ORF6,651,655,Within One Branch
n49,n50,S,640,616,Yes
n23,SC2018,ORF7a,625,666,Yes
WIV16,Rs4231,ORF8,600,600,Yes
F46,n19,ORF7a,600,561,Yes
n50,n2,ORF7a,600,<100,No
LYRa11,n28,ORF7a,600,418,Yes
n22,Rs672,ORF7a,600,600,Yes
SARS-CoV,C010,ORF7a,600,<100,Yes
Rs7327,n14,M,600,600,Within One Branch
n21,Rs4231,ORF1ab,583,470,Yes
Rs4247_147,n21,ORF1ab,583,470,Yes
n24,Rs4084,S,571,564,Yes
n35,n5,M,549,<100,Yes
As6526,Rs7327,ORF1ab,545,608,Yes
BM48-31,n46,ORF10,539,378,Yes
n2,n35,ORF1ab,537,317,Within One Branch
n48,n2,ORF1ab,537,<100,No
Jiyuan_84,HeB2013,S,535,506,Yes
Jiyuan_84,HeB2013,ORF1ab,533,491,Yes
Rp3,RpS11,M,533,493,Yes
HKU3_7,Rp3,M,533,493,Yes
As6526,Rs4255,ORF8,521,493,Yes
Rm1,HuB2013,ORF1ab,520,521,Yes
n24,YN2018B,S,518,502,Yes
Rs4081,YN2018D,S,511,641,Yes
Rs672,Rs4255,ORF6,506,512,Yes
Anlong-103,YN2013,S,503,447,Yes
n6,n38,S,502,500,Yes
Rs4247_148,n27,ORF7a,500,500,No
Rs7327,YNLF_31C,ORF6,500,500,Yes
n38,n5,ORF3a,500,500,Within One Branch
C020,C010,ORF3a,500,500,Yes
n41,BtKY72,ORF10,500,600,Yes
n47,n4,N,500,<100,Yes
P5E,P5L,M,500,500,Yes
YN2013,Anlong-103,S,497,553,Yes
LYRa11,n44,ORF7a,494,<100,-
GX2013,F46,E,491,468,Yes
YN2018D,Rs4081,S,489,359,Yes
Rs9401,YN2018B,S,482,498,Yes
HuB2013,Rm1,ORF1ab,480,479,Yes
Rs7327,n14,N,474,600,-
HeB2013,Jiyuan_84,ORF1ab,467,509,Yes
RpS11,Rp3,M,467,507,Yes
HKU3_7,RpS11,M,467,507,Yes
HeB2013,Jiyuan_84,S,465,494,Yes
YN2018A,Rs672,ORF8,463,468,Yes
n35,n2,ORF1ab,463,336,No
n48,n35,ORF1ab,463,<100,Within One Branch
CpY11,YNLF_31C,S,462,432,Yes
YNLF_31C,n40,S,462,432,-
n13,F46,ORF8,462,<100,Yes
LYRa11,CpY11,ORF8,448,<100,Yes
YNLF_31C,n40,M,446,429,-
CpY11,n40,S,438,468,-
n40,YNLF_31C,S,438,468,Yes
Rp3,C020,ORF1ab,438,378,Yes
F46,GX2013,E,437,334,Yes
RpS11,n44,ORF7b,424,481,-
Rs4255,YN2018C,ORF3a,424,354,Yes
RpS11,HuB2013,S,422,435,Yes
Rs672,YN2018A,ORF8,419,426,Yes
Rs4247_147,Rs4231,ORF1ab,417,530,Yes
Rs4231,n21,ORF1ab,417,530,-
CpY11,LYRa11,ORF8,415,900,Yes
SC2018,n2,M,415,425,No
n29,Rs4231,S,413,390,Yes
YN2018C,Rs4255,ORF3a,413,407,Yes
Rs4084,Rf4092,ORF7a,412,468,Yes
F46,Anlong-103,S,407,360,Yes
Rs4247_148,n16,ORF7a,400,400,-
Rs7327,n10,ORF7a,400,400,-
HKU3_7,n46,ORF7a,400,<100,No
n39,n21,ORF3a,400,400,-
C020,Rp3,ORF1ab,400,400,Yes
n30,YN2018C,E,400,400,Yes
Rs4084,n19,E,400,400,-
n24,Rs4084,N,399,407,Yes
F46,YN2013,S,393,440,Yes
Rs4231,n29,S,387,410,-
n2,SC2018,M,385,375,Yes
Rs4084,Rs4231,ORF7a,384,472,Yes
Rs672,Rs4081,ORF6,383,406,Yes
YN2018B,YN2018D,ORF1ab,383,351,Yes
n44,RpS11,ORF7b,376,419,Yes
WIV1,SC2018,ORF7a,375,334,Yes
n18,Rs9401,ORF1ab,375,326,-
LYRa11,n46,M,373,<100,No
n39,HuB2013,S,372,365,Yes
n14,n46,ORF8,365,179,No
n50,n49,S,360,384,Yes
Rs4084,Rs9401,ORF7a,354,377,Yes
n46,n44,ORF7a,349,<100,-
WIV1,WIV16,ORF3a,341,853,Yes
WIV1,Rs4084,ORF3a,341,853,Yes
Rs4255,As6526,ORF8,335,376,Yes
Rs4231,Rf4092,ORF7a,332,242,Yes
n23,YN2018B,ORF7a,321,272,Yes
YN2018B,SC2018,ORF8,320,280,Yes
YN2018D,YN2018B,ORF1ab,317,349,Yes
Rs4255,Rs4084,N,301,323,Yes
n36,Rp3,ORF8,300,300,Yes
Rp3,RpS11,ORF8,300,300,Yes
Rs4247_148,n8,ORF7a,300,300,-
Rs4084,YN2018C,ORF7a,300,300,Yes
RpS11,n28,ORF7a,300,202,-
SARS-CoV,n32,ORF7a,300,<100,-
n40,n34,ORF7a,300,<100,-
n5,n35,ORF6,300,955,-
Rs4084,n13,ORF6,300,300,-
n46,n4,ORF6,300,<100,Yes
Rs4084,Rs4247_148,ORF6,300,300,Yes
YN2018D,n38,ORF3a,300,<100,-
B039,C010,ORF3a,300,300,Yes
SC2018,n19,ORF3a,300,300,-
n40,Rs4247_147,ORF3a,300,300,Yes
n36,n29,ORF10,300,300,-
YN2018B,Rs4084,ORF10,300,300,Yes
Rs672,Rs4231,ORF10,300,300,Yes
Rs4084,YN2018C,N,300,<100,Yes
SC2018,n8,N,300,<100,-
Rs4084,n22,N,300,111,-
n37,n2,N,300,<100,No
n11,Rs672,N,300,<100,Yes
Rm1,RpS11,N,300,<100,Yes
Rs4084,YNLF_31C,N,300,<100,Yes
SC2018,Rp3,N,300,<100,Yes
Rs7327,Rs4084,M,300,300,Yes
Rs4247_148,SC2018,E,300,300,Yes
Rs7327,n28,N,293,252,-
n38,n6,S,292,300,-
n31,SARS-CoV,M,280,<100,Yes
n26,n13,ORF1ab,278,315,-
GX2013,Anlong-103,ORF8,276,224,Yes
GX2013,n44,ORF7b,276,219,-
n21,Rs4231,N,276,189,Yes
n20,n29,S,274,231,-
F46,n38,S,270,300,-
Rs4231,Rs4084,ORF7a,270,187,Yes
CpY11,YN2018C,ORF3a,269,246,Yes
Rs4247_147,n29,N,269,247,-
16BO133,n41,ORF7a,268,287,-
n6,SC2018,ORF6,268,300,Yes
n26,n8,ORF1ab,265,284,-
n46,n40,ORF6,261,<100,-
n46,BM48-31,ORF10,261,122,Yes
Rs4081,Rs672,S,259,357,Yes
WIV16,Rs4231,S,257,262,Yes
n5,n46,ORF7b,255,100,Within One Branch
n13,n26,ORF1ab,255,260,-
LYRa11,Rp3,E,254,<100,Yes
HeB2013,Jiyuan_84,N,253,255,Yes
Rs672,Rs4081,S,252,284,Yes
YN2018D,Rs672,S,251,201,Yes
n2,n34,S,251,<100,-
Rs4231,n20,ORF8,249,223,-
YNLF_31C,n14,ORF6,249,245,-
n13,n10,ORF1ab,247,259,-
Jiyuan_84,HeB2013,N,247,245,Yes
CpY11,Rs4255,ORF3a,246,293,Yes
YN2018A,n40,E,245,400,-
n2,n46,E,243,<100,Yes
YN2018A,Rs4081,ORF6,242,220,Yes
n6,F46,S,240,264,Yes
Rs9401,Rs7327,ORF1ab,240,213,Yes
Rs7327,As6526,ORF1ab,240,213,Yes
WIV16,n29,S,239,259,-
F46,n6,S,239,136,-
n34,n46,M,239,<100,No
Rs672,YN2018D,S,238,158,Yes
GX2013,RpS11,ORF7b,236,300,Yes
Rf4092,Rs4084,ORF7a,235,245,Yes
n39,n5,N,235,<100,-
n14,n35,ORF8,233,172,-
LYRa11,n35,E,233,152,-
n20,Rs4231,S,230,248,Yes
Rs9401,Rs4084,S,229,236,Yes
SC2018,YN2018A,ORF8,226,233,Yes
n40,YNLF_31C,M,226,203,Yes
n40,n46,ORF6,225,<100,No
As6526,Rs9401,ORF1ab,225,274,Yes
B039,C020,N,225,210,Yes
RpS11,GX2013,ORF7b,224,231,Yes
Rs672,As6526,ORF6,224,216,Yes
Rs4247_148,Rs4231,N,224,311,Yes
n24,Rs7327,S,223,255,Yes
WIV1,WIV16,E,223,179,Yes
Rs7327,Rs9401,ORF3a,222,<100,Yes
n26,YN2018A,ORF1ab,221,232,Yes
GX2013,n35,M,221,387,-
HuB2013,n2,N,219,492,No
n10,n24,M,217,200,-
n18,Rs7327,ORF1ab,215,179,Yes
n39,Rp3,ORF8,214,255,-
n2,n46,ORF7b,214,<100,Yes
n18,n11,ORF1ab,214,249,-
n5,n40,ORF6,212,900,-
n10,As6526,ORF3a,212,182,Yes
Rp3,LYRa11,E,207,261,Yes
HuB2013,RpS11,S,206,200,Yes
YN2018A,As6526,ORF6,206,190,Yes
n38,Rp3,ORF8,205,<100,Yes
YN2018A,SC2018,ORF8,205,210,Yes
Rs4231,Rs9401,ORF8,200,200,Yes
n22,YN2018B,ORF8,200,200,Yes
WIV16,Rs9401,ORF8,200,200,Yes
n43,F46,ORF7b,200,200,Yes
LYRa11,CpY11,ORF7b,200,120,Yes
n24,n40,ORF7b,200,200,-
HeB2013,n7,ORF7b,200,200,-
n43,Rp3,ORF7b,200,200,Yes
n40,n19,ORF7a,200,200,-
n46,n39,ORF7a,200,<100,-
Rs7327,n8,ORF7a,200,200,-
Rs4247_148,Rp3,ORF7a,200,200,Yes
Rs4247_148,n15,ORF7a,200,200,-
B039,A022,ORF7a,200,200,Yes
Rs4084,YN2018D,ORF7a,200,200,Yes
Rs4084,Rs4247_148,ORF7a,200,200,Yes
LYRa11,CpY11,ORF6,200,200,Yes
F46,n38,ORF3a,200,202,-
Rf4092,C007,ORF1ab,200,200,Yes
n41,A022,ORF10,200,200,Yes
HeB2013,YNLF_31C,ORF10,200,200,Yes
n2,n3,N,200,<100,Yes
n40,n2,N,200,<100,No
n29,n19,N,200,200,-
Rs4231,n24,M,200,100,-
As6526,n8,M,200,<100,-
F46,n12,M,200,200,-
F46,n7,M,200,200,-
n37,LYRa11,E,200,200,Yes
n37,Rp3,E,200,200,Yes
Anlong-103,YN2018C,E,200,200,Yes
Rs7327,n38,E,200,200,-
n14,YN2013,ORF8,199,<100,Yes
SC2018,Rs672,ORF8,199,182,Yes
Rs672,SC2018,ORF8,199,214,Yes
n17,Rs9401,ORF7a,195,223,Yes
As6526,YN2018A,ORF6,194,210,Yes
F46,CpY11,E,194,<100,Yes
F46,n12,E,194,<100,-
F46,n35,E,194,<100,-
F46,Rs672,E,194,<100,Yes
n28,YN2018C,N,193,152,Yes
n11,n26,M,192,145,-
n15,Rs9401,N,190,158,Yes
n14,GX2013,ORF8,188,<100,Yes
n40,n5,ORF6,188,<100,-
Rs672,YN2018A,ORF6,187,166,Yes
n15,n35,ORF8,186,111,-
n46,n2,ORF7b,186,<100,Yes
n5,BM48-31,ORF10,183,<100,Yes
GX2013,CpY11,E,183,<100,Yes
RpS11,Rp3,ORF8,181,322,Yes
n26,Rs9401,ORF3a,181,<100,Yes
n2,HuB2013,N,181,208,Yes
Rs4255,Rf4092,M,180,147,Yes
n21,YNLF_31C,M,179,127,Yes
n24,As6526,N,178,190,Yes
n21,Rs4255,ORF7a,177,193,Yes
n18,SC2018,M,176,<100,Yes
n24,Rs7327,ORF3a,175,275,Yes
C020,B039,N,175,190,Yes
Rs4084,Rs7327,N,174,<100,Yes
n23,Rs672,S,173,<100,Yes
n34,n19,S,171,179,-
Rs9401,n20,ORF8,168,172,-
Rs4084,Anlong-103,N,168,<100,Yes
LYRa11,Anlong-103,ORF8,166,<100,Yes
Rs9401,Rs7327,ORF3a,166,478,Yes
LYRa11,GX2013,ORF8,165,<100,Yes
Rs4081,As6526,ORF8,165,124,Yes
n46,n5,M,165,<100,-
n9,Anlong-103,ORF8,164,276,Yes
n44,GX2013,ORF7b,164,200,Yes
n28,n40,M,163,185,-
n24,Rs672,S,162,216,Yes
Rs4081,n38,E,162,<100,-
n14,LYRa11,ORF8,161,<100,Yes
n5,n46,ORF10,161,<100,Within One Branch
SARS-CoV,SC2018,M,161,<100,Yes
YN2018C,Rs9401,ORF7a,160,108,Yes
Rs9401,As6526,ORF1ab,160,187,Yes
n14,Anlong-103,ORF8,159,<100,Yes
A022,C007,N,158,202,Yes
n39,n44,N,158,<100,-
n18,n35,M,158,<100,-
n46,n2,E,157,500,Yes
n27,Rs9401,ORF3a,156,<100,Yes
n11,Rf4092,ORF3a,156,169,Yes
Rs4255,Rs672,S,155,164,Yes
n40,YN2018A,E,155,<100,Yes
n9,n13,ORF1ab,153,145,-
n10,n13,ORF1ab,153,141,-
n26,n10,ORF1ab,153,141,-
Rs4084,As6526,N,152,140,Yes
n22,YN2018C,N,152,187,Yes
As6526,Rs4255,N,152,241,Yes
HeB2013,16BO133,ORF7a,151,116,Yes
n46,n2,ORF7a,151,<100,Yes
n23,Rf4092,N,151,<100,Yes
Rs4084,n26,M,151,209,-
LYRa11,Rf4092,ORF8,150,<100,Yes
SARS-CoV,n33,N,150,<100,-
Rs4247_147,SARS-CoV,N,150,<100,Yes
16BO133,HeB2013,ORF7a,149,184,Yes
n2,n46,ORF7a,149,<100,Yes
YN2018B,YN2018A,ORF8,148,162,Yes
Rs4084,Rs4255,N,148,<100,Yes
As6526,n35,M,148,<100,-
n14,CpY11,ORF8,147,<100,Yes
Anlong-103,GX2013,ORF8,145,<100,Yes
n43,n12,ORF8,145,<100,-
Rf4092,YN2018C,ORF6,145,153,Yes
YNLF_31C,n21,M,145,190,-
n18,Rs4255,ORF8,144,131,Yes
YN2013,Rf4092,ORF3a,144,131,Yes
n40,n44,N,142,<100,-
n18,SARS-CoV,M,142,<100,Yes
SC2018,n18,M,141,<100,-
As6526,n24,M,141,<100,-
n21,n40,M,141,114,-
n21,Rf4092,M,141,148,Yes
n18,Rs9401,ORF7a,140,120,Yes
n36,n6,S,138,123,-
YNLF_31C,n34,ORF8,138,<100,-
P4L,n47,ORF1ab,138,<100,No
n28,n21,M,138,180,-
n46,n4,ORF8,137,100,Yes
n39,n34,ORF7a,137,<100,-
Rs4081,Rs4255,ORF8,135,176,Yes
YN2018B,Rs672,ORF8,132,158,Yes
Rs4231,Rs9401,ORF7a,132,150,Yes
Rm1,HuB2013,N,132,182,Yes
Rs4084,Rs4081,N,132,<100,Yes
Rs4081,Anlong-103,N,132,<100,Yes
HeB2013,n12,ORF8,131,<100,-
Rs7327,WIV1,M,130,100,Yes
GX2013,n35,E,130,<100,-
SARS-CoV,n38,M,129,<100,-
n22,YNLF_31C,N,128,117,Yes
C007,B039,N,128,133,Yes
SARS-CoV,n18,M,127,<100,-
Rs4084,n14,N,126,<100,-
n14,Rs7327,N,126,<100,Yes
n31,n18,M,124,<100,-
n46,n35,ORF8,123,222,-
n38,n34,ORF7a,122,<100,-
Rf4092,Rs4231,ORF7a,122,142,Yes
n46,n35,E,122,<100,-
n12,HeB2013,ORF8,121,<100,Yes
n15,n46,ORF8,120,<100,No
SARS-CoV,n2,M,120,<100,No
LYRa11,n46,ORF8,118,<100,No
n46,n6,ORF8,118,<100,-
LYRa11,YN2013,ORF8,118,<100,Yes
Rs4084,n12,M,118,<100,-
n14,Rs7327,ORF6,116,<100,Yes
SARS-CoV,B039,M,115,<100,Yes
n8,CpY11,E,115,128,Yes
n39,n15,M,114,<100,-
n35,n46,E,114,<100,Within One Branch
YNLF_31C,n41,ORF8,113,336,-
Rf4092,Rs9401,ORF6,113,124,Yes
YNLF_31C,Rf4092,E,113,100,Yes
Rf4092,YN2013,ORF8,112,173,Yes
YN2018D,n22,ORF3a,112,<100,-
Rs4247_147,YN2018C,ORF3a,112,178,Yes
n23,YN2018D,S,110,<100,Yes
YN2013,n34,E,110,<100,-
n2,n18,M,109,<100,-
n46,n2,M,109,<100,Yes
n29,YN2018C,N,108,108,Yes
F46,n2,E,108,<100,No
Rs4255,As6526,ORF6,107,130,Yes
YN2018C,n28,N,107,148,-
Rs7327,YN2018C,N,107,359,Yes
Rm1,n2,N,107,129,No
16BO133,Rf4092,S,106,<100,Yes
Rf4092,F46,S,106,<100,Yes
Rs4231,Rs4247_148,ORF6,106,121,Yes
GX2013,n12,E,106,<100,-
GX2013,Rs672,E,106,<100,Yes
Rs4231,n20,N,104,119,-
n43,HeB2013,ORF8,102,<100,Yes
n44,n46,ORF7a,102,<100,No
F46,n40,S,100,100,-
WIV1,Rs4084,S,100,100,Yes
Rs4081,n24,ORF8,100,100,-
n35,n14,ORF8,100,128,-
n12,n41,ORF8,100,<100,-
n8,n46,ORF8,100,<100,No
Rf1,n12,ORF8,100,<100,-
YN2018D,n24,ORF8,100,100,-
P5L,P4L,ORF8,100,100,Yes
n41,n5,ORF8,100,<100,-
n21,Rs4231,ORF8,100,100,Yes
n34,YNLF_31C,ORF8,100,<100,Yes
n25,GX2013,ORF8,100,100,Yes
n5,RpS11,ORF7b,100,<100,Yes
YN2018B,F46,ORF7b,100,100,Yes
n26,F46,ORF7b,100,100,Yes
n24,F46,ORF7b,100,100,Yes
As6526,Rs7327,ORF7b,100,100,Yes
n13,Rs7327,ORF7b,100,100,Yes
n42,WIV16,ORF7b,100,100,Yes
HKU3_12,HKU3_7,ORF7b,100,100,Yes
n43,WIV16,ORF7b,100,100,Yes
Rs672,YN2018A,ORF7b,100,100,Yes
n16,Rs7327,ORF7b,100,100,Yes
n5,n36,ORF7b,100,<100,-
n22,n27,ORF7b,100,100,-
n24,n26,ORF7b,100,100,-
Rs672,n22,ORF7b,100,100,-
n18,n21,ORF7b,100,100,-
GX2013,n28,ORF7b,100,100,-
Rm1,n5,ORF7b,100,100,-
LYRa11,n46,ORF7b,100,<100,No
HeB2013,n5,ORF7b,100,100,-
n12,n40,ORF7b,100,100,-
n16,n40,ORF7b,100,100,-
BtKY72,n4,ORF7b,100,<100,Yes
n18,n8,ORF7b,100,100,-
SC2018,n2,ORF7b,100,100,No
n41,n5,ORF7b,100,100,-
n36,n10,ORF7b,100,100,-
Rs4084,n12,ORF7b,100,100,-
n41,n12,ORF7b,100,100,-
n37,n11,ORF7b,100,100,-
n37,n10,ORF7b,100,<100,-
P5E,P4L,ORF7b,100,100,Yes
n42,YN2018C,ORF7b,100,100,Yes
WIV1,YN2018B,ORF7b,100,100,Yes
n27,n19,ORF7a,100,100,-
Anlong-103,n16,ORF7a,100,100,-
Rs4247_148,n11,ORF7a,100,100,-
Rs4247_148,YN2018D,ORF7a,100,100,Yes
Rs4247_148,Anlong-103,ORF7a,100,100,Yes
Rm1,HuB2013,ORF7a,100,544,Yes
n27,Rp3,ORF7a,100,100,Yes
Anlong-103,Rp3,ORF7a,100,100,Yes
P2V,n2,ORF7a,100,100,No
n20,n26,ORF7a,100,100,-
n40,n5,ORF7a,100,<100,-
YN2018A,n27,ORF7a,100,100,-
Rs4247_148,n26,ORF7a,100,100,-
n26,YN2018A,ORF6,100,100,Yes
n13,Rs4084,ORF6,100,100,Yes
Rs4247_147,Rs4084,ORF6,100,100,Yes
As6526,SC2018,ORF6,100,100,Yes
n13,n11,ORF6,100,100,-
Anlong-103,SC2018,ORF6,100,100,Yes
LYRa11,SC2018,ORF6,100,100,Yes
n11,SC2018,ORF6,100,100,Yes
Rs4084,Rs4247_147,ORF6,100,100,Yes
Rs4084,Rs4231,ORF6,100,100,Yes
Rs7327,SC2018,ORF6,100,100,Yes
n27,Rs4255,ORF6,100,100,Yes
Rs4247_147,As6526,ORF6,100,100,Yes
n27,Rs4081,ORF6,100,100,Yes
SARS-CoV,C010,ORF6,100,<100,Yes
n46,n38,ORF6,100,<100,-
As6526,n26,ORF6,100,100,-
n35,n46,ORF6,100,<100,Within One Branch
n26,As6526,ORF6,100,100,Yes
Rs672,n22,ORF6,100,100,-
YN2018A,n26,ORF6,100,100,-
n35,Rp3,ORF6,100,100,Yes
n39,n5,ORF3a,100,100,-
F46,n6,ORF3a,100,100,-
BtKY72,n3,ORF3a,100,<100,Within One Branch
n46,n2,ORF3a,100,315,Yes
CpY11,n7,ORF3a,100,100,-
BM48-31,n3,ORF3a,100,<100,Within One Branch
Rs4247_147,n38,ORF3a,100,130,-
GX2013,n44,ORF3a,100,100,-
n9,F46,ORF3a,100,100,Yes
Rp3,RpS11,ORF3a,100,100,Yes
n38,F46,ORF3a,100,<100,Yes
n39,n19,ORF3a,100,100,-
F46,n14,ORF3a,100,100,-
n43,16BO133,ORF3a,100,100,Yes
n15,Rs9401,ORF3a,100,<100,Yes
Rp3,CpY11,ORF1ab,100,100,Yes
Rp3,n34,ORF1ab,100,100,-
SC2018,n7,ORF1ab,100,100,-
n26,C007,ORF1ab,100,100,Yes
n19,SC2018,ORF10,100,100,Yes
YN2018B,Rs4247_147,ORF10,100,100,Yes
SARS-CoV,C010,ORF10,100,<100,Yes
WIV1,Rp3,ORF10,100,100,Yes
HKU3_7,n14,ORF10,100,100,-
HKU3_1,Rs7327,ORF10,100,100,Yes
HKU3_7,n7,ORF10,100,100,-
B039,n35,ORF10,100,100,-
Rs4231,YN2018A,ORF10,100,100,Yes
Rf4092,n2,ORF10,100,100,No
Rs4255,Rs4084,ORF10,100,100,Yes
Rs4084,n36,ORF10,100,<100,-
Rs4247_148,SC2018,ORF10,100,100,Yes
C010,CpY11,ORF10,100,100,Yes
Rs4084,SC2018,ORF10,100,<100,Yes
SC2018,Rs4231,ORF10,100,100,Yes
Rs4247_147,YN2018C,N,100,100,Yes
B039,C010,N,100,100,Yes
Rs9401,n16,N,100,100,-
n29,n14,N,100,100,-
P5E,P4L,N,100,100,Yes
P5E,P5L,N,100,100,Yes
P5L,P5E,N,100,100,Yes
P5L,P2V,N,100,100,Yes
n27,n14,N,100,100,-
n20,n15,N,100,100,-
n29,n22,N,100,100,-
n23,n28,N,100,100,-
n49,n51,N,100,100,Within One Branch
Rs7327,WIV16,M,100,100,Yes
n12,F46,M,100,100,Yes
P5L,P4L,M,100,100,Yes
P5E,P4L,M,100,100,Yes
P1E,P2V,M,100,100,Yes
Rs4255,n10,M,100,100,-
Rs7327,n16,M,100,100,-
n14,n35,M,100,<100,-
n15,n35,M,100,<100,-
n15,Rs672,E,100,100,Yes
Rs4084,Rp3,E,100,100,Yes
n44,RpS11,E,100,100,Yes
WIV1,n11,E,100,100,-
n2,n11,E,100,<100,-
n38,n14,E,100,<100,-
YN2013,n14,E,100,100,-
Rs672,n38,E,100,100,-
SARS-CoV,n19,E,100,<100,-
YNLF_31C,n38,E,100,100,-
YN2018A,n22,E,100,<100,-
BM48-31,n3,E,100,<100,Within One Branch
n26,YN2018C,E,100,100,Yes
YN2018C,Rs4081,E,100,100,Yes
Rf4092,Rs4255,E,100,100,Yes
Rs7327,Rs9401,E,100,100,Yes
n15,SC2018,E,100,100,Yes
A022,YN2018C,E,100,100,Yes
C010,C020,E,100,100,Yes