Symbol logFC unshrunk.logFC logCPM PValue FDR 945384 bioF 4.558239667 4.565991309 5.620427074 0.000117625 0.007629308 945388 bioC 3.808024196 3.82079054 4.057029223 2.46E-05 0.003919229 945370 bioB 3.790697036 3.795357846 5.841525846 0.000536503 0.017399192 949025 carA 3.706551478 3.717652858 4.97677822 0.003019893 0.048885012 945554 ompF 3.480549983 3.480558474 14.19758753 0.000402939 0.014899727 2847771 ryeA 3.452601734 3.453359421 7.920221295 0.000374692 0.014763559 945376 bioA 3.341276592 3.346712884 5.159163469 0.00069709 0.020696106 944775 carB 3.30624762 3.308105099 6.349797396 6.88E-05 0.005793526 946932 yffS 3.250759442 3.251409838 8.186685225 1.51E-09 6.38E-06 945387 bioD 3.248768431 3.257036639 4.14748652 0.000143935 0.008085703 948235 bglG 3.041564057 3.066822185 2.374387358 3.48E-05 0.004739181 947965 livH 2.966436168 2.981723764 3.316499155 0.002550471 0.044803278 944928 yagF 2.9052264 2.921139597 3.000138233 2.37E-08 3.33E-05 947285 suhB 2.777788551 2.780079788 5.663624819 0.000755887 0.021388058 947746 gltF 2.704025939 2.706110648 5.214187277 2.12E-05 0.003582136 946985 guaB 2.696615172 2.69752785 6.759841957 1.87E-05 0.003582136 944994 codB 2.646506991 2.6519653 4.028153268 5.35E-05 0.005374728 948841 fimI 2.6172324 2.618413195 6.249464399 9.93E-06 0.003220739 946702 mqo 2.58722773 2.589594529 5.065601747 1.58E-05 0.003271475 947022 glyA 2.574487557 2.574549657 10.41263984 0.000114293 0.007529061 945426 ybiA 2.565630194 2.578131477 2.391338333 0.00299347 0.048885012 948843 fimC 2.528728564 2.530850732 5.311915174 2.62E-06 0.001239054 945357 galT 2.50136207 2.502004693 7.030334485 1.56E-07 0.00016442 947231 cysI 2.489262984 2.489836311 7.003173441 0.001948061 0.037331936 948838 fimA 2.406910682 2.406959383 10.49279055 5.00E-05 0.005292565 945354 galE 2.40288389 2.40323583 7.804307246 2.30E-08 3.33E-05 946544 hisH 2.319845291 2.320885331 6.185558105 1.63E-05 0.003271475 948665 groL 2.317702307 2.317769873 10.10371665 0.000637477 0.019477787 948844 fimD 2.287118986 2.287980369 6.260306448 1.34E-05 0.003271475 947594 fadH 2.275427354 2.277695787 5.458812897 2.65E-06 0.001239054 946786 nmpC 2.273450081 2.273489734 10.89656369 0.000492808 0.01662143 946521 hisA 2.268619383 2.269481161 6.437439256 1.32E-05 0.003271475 946533 plaP 2.218274442 2.218742834 7.024914875 0.000545296 0.017549362 944759 rpsT 2.207859164 2.207947866 9.568913505 0.00017864 0.009127085 948912 radA 2.202875511 2.203888352 6.086714963 7.02E-05 0.005793526 948251 atpI 2.199434179 2.200562421 6.091915964 2.51E-05 0.003919229 948913 serB 2.189508791 2.191471548 5.221329762 0.000297323 0.012868356 946889 cysA 2.18078021 2.181415474 6.62320653 0.000740968 0.021107589 948244 atpD 2.16490403 2.164988906 9.5772941 1.99E-05 0.003582136 948767 pyrB 2.15972594 2.165810594 3.355449862 0.002635601 0.045392621 945325 ybgD 2.151143311 2.156795066 3.109536902 3.83E-05 0.004893693 946292 ydjJ 2.138454021 2.156921272 1.825421419 0.002655114 0.045456712 945611 ndk 2.121778754 2.1222742 6.878554449 0.002181812 0.039993569 944925 yagE 2.118470735 2.129287797 2.964864241 1.62E-05 0.003271475 946551 hisC 2.093700038 2.094097551 7.406929493 3.63E-05 0.004787872 944905 queA 2.091742413 2.093087441 5.530458604 2.64E-05 0.003974 945462 pdeI 2.042977459 2.043405862 6.965033038 0.000357703 0.014500736 948846 fimG 2.027345566 2.043710613 2.069316576 0.00134225 0.030424337 946516 hisF 2.012321862 2.012881137 6.620272206 0.000157574 0.008409247 945329 ymfD 1.997766844 1.99857996 6.078556738 1.20E-05 0.003271475 945307 sucB 1.979112959 1.979265956 8.297778337 0.000200027 0.009921317 946237 ydjO 1.968178735 1.969484487 5.312936493 0.000242528 0.011343738 948243 atpG 1.966850899 1.966991721 8.528447485 4.92E-05 0.005292565 946552 hisB 1.93720983 1.937461737 7.880081459 0.00056835 0.017815143 946239 ynjI 1.920270124 1.922467735 4.379169346 0.000106388 0.007119578 946531 hisD 1.906253016 1.906596789 7.440849646 0.000106111 0.007119578 947420 tktA 1.894597937 1.894818832 8.011587335 0.000699312 0.020696106 945312 sucC 1.889069916 1.88921529 8.334635367 0.001023109 0.02478982 945787 pyrC 1.888298989 1.888986693 6.325883514 0.000831229 0.02212581 948722 priB 1.88644588 1.886783142 7.1178736 0.000367343 0.014610532 947971 livJ 1.878990601 1.879310966 7.571171182 0.000911645 0.023153589 947334 guaA 1.878823052 1.879003339 8.026949532 1.58E-05 0.003271475 945052 yqgC 1.876225308 1.877855396 5.097647518 0.002754813 0.046031072 947818 rplD 1.871454563 1.871510746 9.519238878 0.000334218 0.013915571 947115 tyrA 1.857862551 1.858030653 8.1057225 9.33E-05 0.00666968 947457 speC 1.840543434 1.842105973 5.294551425 0.000637556 0.019477787 948254 atpH 1.835577469 1.835785975 7.763056253 7.25E-05 0.005793526 947819 rplW 1.834350165 1.834509238 7.984145262 0.000123533 0.007659076 946515 hisI 1.830067206 1.830429065 7.069102693 0.000169112 0.008802167 947820 rplB 1.828379973 1.828408316 10.51228018 0.000244848 0.011343738 945864 rnb 1.824750807 1.824920715 8.061048344 0.000856705 0.022514672 947817 rplC 1.82212007 1.822150596 10.4282373 0.000903016 0.023073437 946979 upp 1.821914583 1.822964769 5.621366376 0.000389652 0.014899727 947032 purL 1.821750379 1.821998435 7.704959344 0.00229963 0.041970729 947924 gntT 1.82024282 1.820786416 6.541021479 4.65E-07 0.000392073 949130 tgt 1.816991814 1.817197314 7.738336123 2.09E-05 0.003582136 946285 ydjH 1.811094172 1.819266714 2.552330193 0.000339968 0.013915571 947724 gltB 1.795033556 1.79510266 9.513474985 7.55E-05 0.005793526 946850 alaC 1.789968813 1.790273447 7.516528532 0.0003137 0.013225576 948793 ilvI 1.786143029 1.786613059 6.916007284 0.001370074 0.030562065 948258 asnA 1.780269974 1.781699545 5.259546391 0.000125695 0.007680126 948224 adeP 1.768652461 1.76898343 7.019798599 0.000145585 0.008085703 948242 atpA 1.759469189 1.759494505 10.76582439 0.000478936 0.016416226 948721 rpsR 1.754858112 1.755799361 5.480530241 0.000517244 0.01703671 946882 cysU 1.754791759 1.755700193 5.79964622 0.002878766 0.047225203 947099 trmD 1.748273579 1.748334343 9.350928733 0.001067749 0.025203727 948156 rph 1.74039846 1.741945203 5.152802579 0.000859787 0.022514672 946705 yojI 1.727344635 1.728174551 5.907933011 0.001679386 0.034692308 946376 mepM 1.722446811 1.722652764 7.846470096 0.000151871 0.008208839 947814 rpsC 1.717476979 1.717506391 10.37643505 0.000145757 0.008085703 948247 atpF 1.714959108 1.715081712 8.47771039 9.31E-05 0.00666968 944996 codA 1.69563964 1.696713639 5.400442116 6.43E-05 0.005793526 945314 sucD 1.694785085 1.694880525 8.736503079 0.000499192 0.016665933 947499 parC 1.682784977 1.683247966 6.763589401 4.19E-06 0.001766288 947911 yhgF 1.668257274 1.6688426 6.379796793 0.000274555 0.012184472 947806 rplP 1.665456543 1.665503904 9.677311236 0.00094425 0.023636146 945358 galK 1.662895345 1.66314376 7.558997618 7.64E-05 0.005793526 949009 yafT 1.650838129 1.653828097 3.997387038 0.001873927 0.036407731 948309 bioP 1.646400032 1.648658689 4.500530771 0.000969388 0.023990052 945556 pyrD 1.641252043 1.642111879 5.624846752 0.002080216 0.038986973 948963 ygiQ 1.613586084 1.614372979 5.650038275 0.002860656 0.047111421 945303 sucA 1.601595186 1.60167827 8.791727035 0.001367749 0.030562065 947723 gltD 1.597823611 1.597969686 8.186330533 0.000123158 0.007659076 945803 thrA 1.59777949 1.597906318 8.343990313 0.002619648 0.045392621 947811 rpsS 1.589574123 1.589753246 7.503554623 0.000135562 0.007829173 947758 accB 1.587964595 1.58846722 6.380149663 0.001472759 0.032005941 947333 mdtI 1.57745448 1.581452851 3.249158729 0.00211739 0.039325621 945213 cstA 1.574638109 1.57477651 8.503173206 5.77E-05 0.005658279 947234 yegD 1.573421946 1.575308894 4.480383453 6.51E-05 0.005793526 944931 yafX 1.571177907 1.576841077 3.214015773 0.001595869 0.033740679 945772 prs 1.561493544 1.56158769 8.76071884 5.07E-05 0.005292565 947813 rplV 1.553700508 1.553796699 8.367180534 0.001557422 0.033330402 948482 tufB 1.537524172 1.537545296 11.00863698 0.000299122 0.012868356 944753 dnaJ 1.534659739 1.535624127 5.441107331 0.001220837 0.028125947 948252 atpB 1.524001103 1.524120976 8.266886922 0.000556245 0.017766138 945097 adk 1.520097029 1.520251308 8.031191712 0.001248952 0.028462599 944761 ileS 1.511699239 1.511763818 9.266154029 0.000466488 0.016416226 948216 rpmH 1.510118656 1.512138928 3.936435212 0.002762301 0.046031072 947169 pncC 1.508375664 1.511275507 3.897124154 0.001686889 0.034692308 948245 atpC 1.493379931 1.493533215 7.845612008 3.46E-05 0.004739181 945729 iraM 1.464128097 1.472413318 2.134247482 0.001801971 0.035500517 947047 yfiC 1.45866018 1.461787658 3.550123708 0.002512781 0.044325871 946923 intZ 1.455974986 1.456185875 7.058130458 0.001974815 0.037673399 944938 rlmF 1.446051403 1.44974447 3.457970285 0.00201384 0.038244812 948483 rplA 1.441047484 1.441081979 9.845212591 0.001844476 0.036096878 948277 ilvD 1.43989279 1.440659567 5.565039803 0.000803959 0.02195207 946693 lpxT 1.439683376 1.440039855 6.4749487 0.001491308 0.032242841 946888 cysM 1.421882715 1.422241208 6.594678538 0.001586752 0.033740679 948248 mnmG 1.418894846 1.419224985 6.785550944 0.001070082 0.025203727 948784 yjgN 1.418130262 1.419568311 4.496567885 0.000721618 0.020981656 945602 putP 1.413620808 1.414943423 4.709079362 0.001152883 0.026853899 948897 prfC 1.41011799 1.410432841 6.786646262 0.000706888 0.020696106 944824 mutT 1.390351115 1.396117062 2.548083931 0.001457731 0.031955292 947907 mrcA 1.371881125 1.372555763 5.830893681 0.002333089 0.042359285 947804 rplR 1.347715425 1.347811104 8.096198434 0.001619786 0.03385372 947802 rpsH 1.326656461 1.326730341 8.480326415 0.002699798 0.04571224 946357 yoaB 1.318906437 1.319141916 7.006691229 0.000973031 0.023990052 949116 proS 1.309183784 1.309243948 9.044574593 0.001600601 0.033740679 946362 edd 1.302322313 1.303153011 5.377451393 0.000267689 0.012006126 948720 rplI 1.292954449 1.293001953 9.222444229 0.00301988 0.048885012 947286 recB 1.275934409 1.276251417 6.527274804 0.002568374 0.044930552 945400 yifK 1.269657812 1.270134249 5.858955287 0.001630053 0.03385372 949062 yadS 1.260271912 1.262616515 3.906287213 0.001697227 0.034719204 945006 lacZ 1.227402336 1.231211143 3.339698778 0.001744361 0.03507773 944800 lspA 1.221108717 1.221638502 5.809497621 0.000308601 0.01314202 945564 rlmL 1.176976812 1.177392821 6.158199977 0.002637854 0.045392621 944777 ispH 1.15301238 1.153336791 6.577091 0.001166937 0.027031898 945004 pal 1.136431024 1.136444431 10.77683848 0.002077899 0.038986973 945549 mukB 1.110438866 1.110488433 9.118967936 0.001246424 0.028462599 946614 gyrA 1.099639157 1.099692688 8.9333561 0.002785478 0.046053236 944840 manA -0.988737221 -0.988894966 7.18833717 0.002430395 0.04352975 948737 ytfJ -1.05305013 -1.054145061 4.63264623 0.002472622 0.043800732 947812 degQ -1.085147111 -1.085410188 6.795894637 0.001799076 0.035500517 948864 dnaC -1.123370651 -1.124391409 4.758611253 0.001759639 0.035115663 946566 yegH -1.130401605 -1.131097103 5.261603239 0.000882832 0.022834473 948561 yjbQ -1.13329987 -1.133622908 6.348857649 0.001552935 0.033330402 945812 fadM -1.164745696 -1.166006398 4.461430633 0.002429961 0.04352975 945860 yciN -1.178247028 -1.178402971 7.443196198 0.001369355 0.030562065 944902 gloB -1.186933151 -1.187042829 7.99688409 0.002131401 0.039412228 946315 ldhA -1.198266143 -1.198484598 7.008560807 0.000702325 0.020696106 945858 sohB -1.201365815 -1.201575753 7.287625886 0.000567885 0.017815143 948568 pdeC -1.244281937 -1.244728055 6.230027487 0.001912721 0.036822055 948141 xylA -1.256866766 -1.257147802 6.749758178 0.00162311 0.03385372 947005 phr -1.266327625 -1.266819611 5.969374433 0.001462849 0.031955292 945334 arnD -1.270073292 -1.271620635 4.416546059 0.001704667 0.034719204 948671 gdx -1.270615168 -1.27109162 6.059305737 0.000441936 0.015924792 948058 bcsG -1.274922103 -1.275223641 6.756434477 0.001020916 0.02478982 946485 yedX -1.277638842 -1.278445096 5.217106943 0.000502034 0.016665933 945976 ydcU -1.287067549 -1.287944046 5.243264435 0.000102938 0.007119578 945830 oppA -1.33381618 -1.333823361 12.11142804 0.002611805 0.045392621 945903 ydcV -1.341279853 -1.342203367 5.228238832 0.000890035 0.022880416 945472 ihfA -1.361779763 -1.361802896 10.47282966 0.002780889 0.046053236 948055 csiR -1.363750722 -1.364226705 6.342842408 0.002465526 0.043800732 946409 araF -1.373479399 -1.378339658 3.131328449 0.001765778 0.035115663 947550 ybgO -1.373982584 -1.375445603 4.76787011 0.002761205 0.046031072 946296 yeaH -1.416122748 -1.41624332 8.295841807 0.00073716 0.021107589 946253 spy -1.426682999 -1.427213487 6.008438555 5.14E-05 0.005292565 948930 yccJ -1.458294811 -1.458377944 8.766448559 0.000878885 0.022834473 4056028 yncK -1.497241685 -1.498039127 5.51866157 0.000132312 0.007747607 944956 ykgA -1.502308039 -1.506052125 3.514116754 4.60E-05 0.005292565 948077 wecH -1.503561482 -1.5058366 4.221675908 0.000190324 0.009552452 946297 yeaG -1.504783794 -1.504817952 10.24732611 0.000810986 0.02195207 945401 ybhL -1.508142278 -1.508203338 9.19554084 0.000396705 0.014899727 948728 cysQ -1.511165425 -1.511411787 7.401817148 0.000669294 0.020192931 947263 wrbA -1.514834436 -1.51491756 9.054209856 0.002341014 0.042359285 946308 yoaC -1.515742618 -1.516168212 6.475339048 0.002663142 0.045456712 947622 yqjC -1.523271607 -1.523411126 8.148933419 0.001902303 0.03678949 946172 ydgA -1.533809593 -1.533830991 10.79313346 0.000415394 0.015097429 948757 nrdG -1.548699463 -1.552072808 3.60379894 0.000405007 0.014899727 945644 ydjM -1.556000223 -1.562014922 2.841806164 0.000670543 0.020192931 948755 nrdD -1.556267835 -1.556901078 6.109625207 0.000816034 0.02195207 945988 ycjY -1.561076466 -1.562652863 4.647462756 9.23E-05 0.00666968 945533 ihfB -1.605577653 -1.605625021 9.930503697 0.000940106 0.023636146 946007 ydcT -1.612441983 -1.613945842 5.15464137 1.34E-05 0.003271475 946546 sbmC -1.62464631 -1.62514337 6.418910261 0.002719176 0.045856177 947246 ybdK -1.629617481 -1.629968155 6.969937281 0.000785758 0.021794442 947495 dkgA -1.633727967 -1.634008622 7.318597143 0.000772574 0.021652008 1450233 yaeP -1.639911915 -1.641203816 5.035207371 0.000811239 0.02195207 948033 yhjD -1.67176526 -1.672264108 6.523055908 0.001138512 0.026666478 946406 otsB -1.699576398 -1.699664167 8.870758372 0.002436675 0.04352975 947381 yqfA -1.702105033 -1.702339749 7.453818517 0.001383073 0.030689659 948630 ypjA -1.725615087 -1.726343499 6.294733536 0.001447924 0.031955292 949118 gfcB -1.752719031 -1.769140274 1.760583541 0.001046723 0.025073768 946953 yffB -1.754592723 -1.759361629 3.672666056 0.000400997 0.014899727 946005 ydcS -1.780725227 -1.78149815 6.244106302 0.000131008 0.007747607 945786 ydhS -1.788720873 -1.788829673 8.765907572 0.000179684 0.009127085 947615 yqjG -1.808225139 -1.808556623 7.292253875 0.000338595 0.013915571 947095 yegP -1.813150361 -1.813325316 8.138304812 0.000232392 0.011133687 946436 ydgD -1.813296028 -1.813772518 6.760010693 7.60E-05 0.005793526 948071 yiaG -1.833493845 -1.833525152 10.58190966 0.002157004 0.039711486 947956 yhhA -1.848730608 -1.849276619 6.504016685 0.001713844 0.034738304 944932 ydcK -1.868973759 -1.869765744 6.143870681 0.000775487 0.021652008 948087 avtA -1.895284329 -1.895982589 6.275959886 2.20E-06 0.001239054 946151 hdhA -1.91115446 -1.911249921 9.161538063 0.001056541 0.025165973 945835 dosC -1.918996862 -1.919182347 8.216462195 0.000289312 0.0127056 945275 arnC -1.930500094 -1.9337801 4.053153842 0.000734568 0.021107589 946067 ydeJ -1.94523949 -1.945925897 6.350563221 0.000385309 0.014899727 945623 csgC -1.964753002 -1.99182493 1.542713491 0.002680888 0.045575101 948037 treF -1.987077097 -1.987802601 6.248564793 0.000128049 0.007712187 948203 ydcL -1.999265572 -1.999426342 8.535327089 4.03E-05 0.00500229 946481 hchA -2.022555984 -2.022613375 10.01547652 0.000817475 0.02195207 945493 ybjQ -2.036160231 -2.040339107 3.885200129 0.000472267 0.016416226 946365 ycgB -2.043728692 -2.04382603 9.20107005 4.47E-05 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