Collaborator Sample ID Adapter % Duplication % (Library AVG) Est Lib Size (Library AVG) Exc Baseq % (Raw) Exc Mapq % (Raw) Exc Overlap % (Raw) Exc Total % (Raw) Exc Unpaired % (Raw) Genome Territory (Raw) Mean Coverage (Raw) Mean Insert Size (Library AVG) Mean Read Length PF Bases (BC) PF Bases Aligned PF HQ Aligned Bases PF HQ Aligned Q20 Bases PF Mismatch Rate PF Noise Reads PF Reads PF Reads % PF Reads Aligned PF Reads Aligned % PF Reads Aligned (Paired) Reads Aligned in Pairs Reads Aligned in Pairs % Total Reads ProportionCoverage10x ProportionCoverage30x 16427 0.1 12.991 6181039577 1.9 0 4.3 19.3 0.2 2745186691 72.16 384 151 266377757912 260865440239 246448324080 236330098567 0.01 23 1764091112 100 1753732708 99.4 1753732708 1748030016 99.7 1764091112 0.91 0.89 16439 0.2 22.839 3020252220 1.3 0 3.1 27.5 0.2 2745186691 87.32 390 151 355777828258 347287851685 325375444485 312981990565 0.01 24 2356144558 100 2336331504 99.2 2336331504 2325919062 99.6 2356144558 0.91 0.9 16440 0.6 13.624 7416252620 1.5 0 4.4 19.6 0.2 2745186691 80.25 382 151 296614613388 289460214247 272523875051 263700841147 0.01 250 1964335188 100 1943117018 98.9 1943117018 1936510160 99.7 1964335188 0.91 0.9 16468 0.3 10.526 8019063933 1.7 0 6.3 18.6 0.2 2745186691 62.24 349 151 224595016314 219714602365 206762994063 199240975320 0.01 22 1487384214 100 1475908572 99.2 1475908572 1470991234 99.7 1487384214 0.91 0.87 15284_D 0.2 11.933 6090972825 1.6 0 6 19.6 0.2 2745186691 66.16 343 151 242065553536 237123757760 222393855813 214498346512 0.01 35 1603083136 100 1592589130 99.3 1592589130 1587960808 99.7 1603083136 0.91 0.88 15284_R 0.2 14.484 5209347043 1.5 0 5.6 21.8 0.2 2745186691 71.19 361 151 267238868934 261436152555 246121229479 237576250825 0.01 174 1769793834 100 1756884110 99.3 1756884110 1750182452 99.6 1769793834 0.91 0.89 15318_D 0.1 15.678 4623821467 1.4 0 2.9 20.1 0.2 2745186691 81.21 383 151 305145930074 299346160380 282796628448 272392014072 0.01 28 2020833974 100 2009636608 99.4 2009636608 2002198684 99.6 2020833974 0.91 0.89 15318_R 0.1 22.269 2587326261 1.3 0 1.7 25.4 0.2 2745186691 74.5 396 151 299964082100 293911032432 277042746789 266262137426 0.01 30 1986517100 100 1974885648 99.4 1974885648 1968150060 99.7 1986517100 0.91 0.88 15356_D 0.2 13.321 6154552356 1.6 0 7.2 22.1 0.1 2745186691 77.55 336 151 292338427778 286841582391 270666807549 261200994130 0.01 26 1936016078 100 1925588970 99.5 1925588970 1920668844 99.7 1936016078 0.91 0.89 15356_R 0.2 12.178 6965769812 2.1 0 4.1 18.6 0.3 2745186691 70.57 383 151 257168879764 250403639971 236149386302 225576440604 0.01 23 1703105164 100 1687433019 99.1 1687433019 1678236938 99.5 1703105164 0.91 0.89 15415_R 0.1 12.275 9161532849 1.4 0 4 17.9 0.2 2745186691 106.71 389 151 380045656150 371817210081 350358852982 337365132842 0.01 214 2516858650 100 2499215485 99.3 2499215485 2488246984 99.6 2516858650 0.91 0.9 15555_D 0.2 12.064 6850157775 1.9 0 4.5 18.6 0.2 2745186691 71.21 376 151 258231003194 252317893815 236903010505 227293693483 0.01 17 1710139094 100 1696957163 99.2 1696957163 1690446706 99.6 1710139094 0.91 0.89 15596_D 0.2 17.495 5445685656 1.2 0 4.5 23.4 0.1 2745186691 85.74 359 151 337973509160 331733645892 313890522812 304689485296 0.01 261 2238235160 100 2224591636 99.4 2224591636 2218260662 99.7 2238235160 0.91 0.9 15596_R 0.2 16.092 5409549492 1.3 0 5.1 22.7 0.2 2745186691 84.71 364 151 330460443458 323681876394 305809135720 296400873048 0.01 241 2188479758 100 2173931473 99.3 2173931473 2166977104 99.7 2188479758 0.91 0.9 15804_D 0.4 15.384 5765855041 1.3 0 5.2 22 0.2 2745186691 76.84 369 151 287714152438 281621189620 266545235524 258355973111 0.01 207 1905391738 100 1890273290 99.2 1890273290 1883844474 99.7 1905391738 0.91 0.9 16036_D 0.3 13.07 7543840571 1.5 0 5.1 19.8 0.2 2745186691 69.33 374 151 258121032914 252603387161 238061457317 230253307096 0.01 170 1709410814 100 1697472650 99.3 1697472650 1691928302 99.7 1709410814 0.91 0.9 16433_D 0.6 12.245 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1718879970 1714195008 99.7 1728510860 0.91 0.89 11840_D 0.5 15.321 5035428061 1.4 0 2.8 19.7 0.3 2745186691 70.65 387 151 258893852122 252372208259 238002480225 230286413314 0.01 168 1714528822 100 1695284030 98.9 1695284030 1687417636 99.5 1714528822 0.91 0.88 11840_R 0.4 14.619 5312162991 1.4 0 2.2 18.5 0.2 2745186691 74.15 391 151 266010656376 259826184521 244473616488 236508810649 0.01 202 1761659976 100 1746204447 99.1 1746204447 1740354914 99.7 1761659976 0.91 0.88 11845_D 0.2 9.358 10588296942 1.5 0 2.5 13.5 0.3 2745186691 87.95 392 151 297997239452 291541693137 275598007020 265299943927 0.01 189 1973491652 100 1958620687 99.2 1958620687 1950303800 99.6 1973491652 0.91 0.9 11845_R 0.2 12.884 5953819514 1.3 0 2.8 17.2 0.3 2745186691 70.33 383 151 247844771100 242565615235 228640431199 220306216551 0.01 152 1641356100 100 1629165833 99.3 1629165833 1622023262 99.6 1641356100 0.91 0.86 11883_D 0.1 13.082 5712152182 1.4 0 2.5 17.1 0.3 2745186691 83.83 392 151 296405173368 290479349667 274852565994 264656321488 0.01 189 1962948168 100 1950425644 99.4 1950425644 1941939650 99.6 1962948168 0.91 0.9 11883_R 0.1 11.487 8536343873 1.6 0 2.9 16.2 0.3 2745186691 81.66 395 151 285604516036 279343517480 263980417014 253783333362 0.01 31 1891420636 100 1878177387 99.3 1878177387 1869974102 99.6 1891420636 0.91 0.9 11959_R 0.6 12.549 8598567429 1.4 0 5.6 19.6 0.2 2745186691 77.2 358 151 288077954020 281039178025 265013172178 256894041690 0.01 184 1907801020 100 1888539541 99 1888539541 1883105916 99.7 1907801020 0.91 0.9 12341_D 0.1 11.692 7414610166 1.4 0 2.5 15.8 0.3 2745186691 74.83 391 151 266533867148 261020466414 247232882278 238191188800 0.01 153 1765124948 100 1752581988 99.3 1752581988 1744747868 99.6 1765124948 0.91 0.9 12341_R 0.1 18.976 4896603471 1.1 0 2.8 23 0.1 2745186691 116.52 375 151 449668371938 441822437441 418978924157 404535354692 0.01 297 2977936238 100 2963063658 99.5 2963063658 2954175954 99.7 2977936238 0.91 0.9 12531_D 0.2 18.255 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236691409653 226683459421 0.01 20 1702287868 100 1687259259 99.1 1687259259 1680108206 99.6 1702287868 0.91 0.9 12968_D 0.2 13.517 7717225064 1.6 0 3.1 18.4 0.3 2745186691 94.81 392 151 340896358176 333204495923 315171719559 303114355045 0.01 29 2257591776 100 2240084304 99.2 2240084304 2229608888 99.5 2257591776 0.91 0.9 13510_D 0.1 14.934 5153555556 1.7 0 3.8 20.5 0.2 2745186691 82.52 376 151 304120596284 297999915266 281007500975 269931117700 0.01 39 2014043684 100 2001925545 99.4 2001925545 1995242506 99.7 2014043684 0.91 0.9 13510_R 0.2 12.034 7423617178 1.9 0 4.1 18.2 0.2 2745186691 80.43 382 151 286543722446 280320455264 264493613966 253618737799 0.01 40 1897640546 100 1884631577 99.3 1884631577 1877394846 99.6 1897640546 0.91 0.87 13532_D 0.3 14.759 4444948215 1.8 0 3 19.8 0.2 2745186691 70.17 387 151 256534308304 250702361105 236851846442 227011280046 0.01 15 1698902704 100 1685155872 99.2 1685155872 1678322958 99.6 1698902704 0.91 0.89 13532_R 0.2 12.026 9190921094 1.8 0 2.4 16.3 0.2 2745186691 86.2 384 151 300583629664 294383459172 278395466146 267271253660 0.01 44 1990620064 100 1978069883 99.4 1978069883 1972542710 99.7 1990620064 0.91 0.9 13577_D 0.3 15.843 4826441870 1.9 0 1.4 19.4 0.4 2745186691 88.68 433 151 326329830606 317299251285 298559098731 285032469986 0.01 27 2161124706 100 2136623224 98.9 2136623224 2122724850 99.3 2161124706 0.91 0.9 13577_R 0 18.563 3896586799 1.4 0 2.3 22.2 0.1 2745186691 91.87 389 151 347791212966 341039680572 321099703287 308990010839 0.01 21 2303253066 100 2291797353 99.5 2291797353 2284998550 99.7 2303253066 0.91 0.9 13739_D 0.1 9.99 8419622169 1.3 0 3.9 15.4 0.2 2745186691 77.68 361 151 267450382788 262176370631 248041870903 239422070121 0.01 173 1771194588 100 1759761070 99.4 1759761070 1753012780 99.6 1771194588 0.91 0.89 13856_D 0.1 12.428 4513073074 1.5 0 2.1 16.2 0.3 2745186691 64.37 408 151 225360156568 220245380042 206936022307 198848826097 0.01 133 1492451368 100 1481051794 99.2 1481051794 1474138440 99.5 1492451368 0.9 0.88 13856_R 0.1 15.33 4892941725 1.4 0 2.5 19.4 0.2 2745186691 85.78 385 151 311575332498 305466927712 287119946803 276604075665 0.01 18 2063412798 100 2052124584 99.5 2052124584 2044641598 99.6 2063412798 0.91 0.9 14112_D 0.2 14.703 6408465334 1.5 0 1.9 18.2 0.2 2745186691 107.51 410 151 389566056660 380602648205 359453401287 345128988970 0.01 265 2579907660 100 2558901910 99.2 2558901910 2547013180 99.5 2579907660 0.91 0.91 14112_R 0.3 13.848 6461393179 1.5 0 2.2 17.7 0.3 2745186691 98.41 410 151 356158438858 347318559972 326846275503 313706688276 0.01 244 2358665158 100 2336075117 99 2336075117 2324246374 99.5 2358665158 0.91 0.91 14534_D 0.1 15.367 3528747485 1.3 0 1.9 18.8 0.2 2745186691 68.06 396 151 245412836976 240429598515 227793227959 219230796357 0.01 163 1625250576 100 1614267847 99.3 1614267847 1607710118 99.6 1625250576 0.91 0.88 14534_R 0.1 10.296 9249736252 1.3 0 4 15.7 0.2 2745186691 95.18 366 151 330834292278 324431861605 306490081429 295884716843 0.01 197 2190955578 100 2178432940 99.4 2178432940 2170597134 99.6 2190955578 0.91 0.9 13556 0.1 11.593 9504672086 2 0 2.4 16.2 0.2 2745186691 91.46 398 151 319775782514 312681330238 295218917663 282458871170 0.01 41 2117720414 100 2103168007 99.3 2103168007 2094271616 99.6 2117720414 0.91 0.9 12210 0.2 14.943 7530126030 1.3 0 8.5 24.8 0.1 2745186691 79.94 319 151 312791347578 306361044531 288433685847 278683856125 0.01 29 2071465878 100 2061083337 99.5 2061083337 2056722316 99.8 2071465878 0.91 0.9 12943 0.3 17.456 6646186457 1.5 0 4.7 23.8 0.2 2745186691 70.13 356 151 270412274968 264416736987 248228238696 239448029694 0.01 33 1790809768 100 1777787170 99.3 1777787170 1772303532 99.7 1790809768 0.91 0.88 13070 0.5 21.772 5063756842 1 0 5.9 28.6 0.1 2745186691 75.69 336 151 311992727302 305465051851 288763180739 280221919983 0.01 16 2066177002 100 2048921443 99.2 2048921443 2043828452 99.8 2066177002 0.91 0.89 13835 0.1 19.036 6478505027 1.4 0 3.3 23.9 0.1 2745186691 79.17 369 151 302052171104 296317266092 279691031641 269696239510 0.01 28 2000345504 100 1990742860 99.5 1990742860 1985666666 99.7 2000345504 0.91 0.88 14338 0.3 18.574 6655387440 1.1 0 5.5 25.2 0.2 2745186691 72.9 347 151 294299899054 288825614939 273264648337 264981070458 0.01 11 1949005954 100 1935666596 99.3 1935666596 1929956260 99.7 1949005954 0.91 0.9 14345 0.4 20.754 4637776352 1 0 4.8 26.7 0.1 2745186691 73.07 349 151 296893803932 290894978628 273739584555 265985072021 0.01 174 1966184132 100 1951284635 99.2 1951284635 1946586604 99.8 1966184132 0.91 0.9 14720 0.3 21.243 5058352886 1.1 0 4.7 27.1 0.1 2745186691 76.02 365 151 312887696450 306686679986 289556305553 280289322674 0.01 13 2072103950 100 2057473136 99.3 2057473136 2051762894 99.7 2072103950 0.91 0.9 14742 0.2 20.993 4994763539 1.1 0 3.8 26 0.1 2745186691 76.24 368 151 300948645286 295636435809 280450664153 272122163258 0.01 156 1993037386 100 1981549379 99.4 1981549379 1976685522 99.8 1993037386 0.91 0.9 14800 0.4 15.583 7348038974 1.6 0 6.3 23.7 0.2 2745186691 75.8 352 151 292168633110 284268265480 267595315159 256905573601 0.01 29 1934891610 100 1916897384 99.1 1916897384 1909036502 99.6 1934891610 0.91 0.89 14922 0.5 24.496 5201424089 1 0 6.6 32.1 0.1 2745186691 97.93 333 151 434297759402 424734907096 401488949113 390192475219 0.01 45 2876144102 100 2850617371 99.1 2850617371 2841501478 99.7 2876144102 0.91 0.9 15598 0.1 18.373 7159889783 1.6 0 4.1 24.2 0.2 2745186691 77.24 373 151 302691975922 296019565281 277222705872 266667028528 0.01 23 2004582622 100 1991562768 99.4 1991562768 1984112206 99.6 2004582622 0.91 0.89 15765 0.2 22.148 5785058792 1 0 3.7 27 0.1 2745186691 82.35 369 151 331024500334 324989682354 306468434491 296651669979 0.01 6 2192215234 100 2180153347 99.4 2180153347 2174438014 99.7 2192215234 0.91 0.9 15801 0.7 19.459 5805826329 0.9 0 8.9 29.3 0.1 2745186691 74.15 313 151 308142607218 301282319427 284512005576 276983668461 0.01 19 2040679518 100 2020081927 99 2020081927 2014921232 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