##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=20220702
##source=freeBayes v1.3.5
##reference=/opt/species_resources/genomes/genome.fa
##contig=<ID=chr5,length=1343557>
##contig=<ID=chr10,length=1687656>
##contig=<ID=chr7,length=1445207>
##contig=<ID=chr3,length=1067971>
##contig=<ID=chr13,length=2925236>
##contig=<ID=chr11,length=2038340>
##contig=<ID=chr14,length=3291936>
##contig=<ID=chr9,length=1541735>
##contig=<ID=chr1,length=640851>
##contig=<ID=chr12,length=2271494>
##contig=<ID=chr8,length=1472805>
##contig=<ID=chr6,length=1418242>
##contig=<ID=chr4,length=1200490>
##contig=<ID=chr2,length=947102>
##contig=<ID=chrM,length=5967>
##contig=<ID=chrP,length=34242>
##phasing=none
##commandline="freebayes -r chr1:100028-101116 -v /opt/analysis/contig_vcfs/chr1_0.vcf -@ /opt/analysis/targets.vcf.gz --pooled-continuous --min-alternate-fraction 0.01 --min-alternate-count 2 --haplotype-length 3 --min-alternate-total 10 --use-best-n-alleles 70 --genotype-qualities --gvcf --gvcf-dont-use-chunk true -f /opt/species_resources/genomes/genome.fa -L /opt/analysis/padded_bams/bamlist.txt -q 1"
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Float,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Float,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Float,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Float,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##bcftools_concatVersion=1.12+htslib-1.12
##bcftools_concatCommand=concat -f /opt/analysis/contig_vcfs/vcf_file_list.txt -Oz -o /opt/analysis/variants.vcf.gz; Date=Sat Jul  2 19:14:21 2022
##bcftools_viewVersion=1.12+htslib-1.12
##bcftools_viewCommand=view -h /opt/analysis/variants.vcf.gz; Date=Sat Jul  2 19:17:21 2022
##bcftools_viewVersion=1.13+htslib-1.13
##bcftools_viewCommand=view -i AC>0 -Oz -o EPHI_target_IBC_loci.vcf.gz -R IBC_target_loci.tsv variants.vcf.gz; Date=Tue Jul  5 17:04:43 2022
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	1766A-EPHI-2	1861DA-EPHI-1	2940A-EPHI-2	E18-1374G-EPHI-1	2432A-EPHI-1	1722A-EPHI-1	2729A-EPHI-2	2878A-EPHI-2	4247A-EPHI-2	4147T-EPHI-1	5918T-EPHI-1	5375DT-EPHI-1	1302A-EPHI-2	1138A-EPHI-2	2643A-EPHI-2	2631-A-EPHI-2	1067A-EPHI-2	4245T-EPHI-1	2651DA-EPHI-1	36DA-EPHI-1	1390A-EPHI-2	2180A-EPHI-1	2171-DA-EPHI-1	2487A-EPHI-1	2909A-EPHI-2	2444A-EPHI-1	3450T-EPHI-1	5377T-EPHI-1	1329-A-EPHI-2	2682A-EPHI-2	2649A-EPHI-2	2961A-EPHI-2	1695A-EPHI-1	1311A-EPHI-2	2625A-EPHI-2	5585DT-EPHI-1	4640T-EPHI-1	2767A-EPHI-2	1296A-EPHI-2	5600T-EPHI-1	3449T-EPHI-1	1359A-EPHI-2	2945A-EPHI-2	5124T-EPHI-1	1087A-EPHI-2	1784A-EPHI-1	2732A-EPHI-2	2706A-EPHI-2	2581A-EPHI-1	3399T-EPHI-1	2622A-EPHI-2	1107A-EPHI-2	2638A-EPHI-2	1092A-EPHI-2	4625T-EPHI-1	5790T-EPHI-1	1114DA-EPHI-1	1839A-EPHI-2	2438A-EPHI-1	2451-A-EPHI-1	1972A-EPHI-2	2573A-EPHI-1	1065A-EPHI-2	2642A-EPHI-2	2934A-EPHI-2	1141A-EPHI-2	1426A-EPHI-1	2704A-EPHI-1	3787DT-EPHI-1	3817A-EPHI-2	1927-A-EPHI-2	2105-A-EPHI-1	3934A-EPHI-2	2716A-EPHI-2	1783A-EPHI-1	2458-DA-EPHI-1	2454-A-EPHI-1	1312A-EPHI-2	4463T-EPHI-1	2566A-EPHI-1	3393T-EPHI-1	3125T-EPHI-1	5921T-EPHI-1	3-question-marks-EPHI-1	4634-A-EPHI-1	E18-1453G-EPHI-1	2243-A-EPHI-1	3397T-EPHI-1	5371T-EPHI-1	4457T-EPHI-1	1922A-EPHI-2	1864DA-EPHI-1	4246DT-EPHI-1	4548-DT-EPHI-1	2728A-EPHI-2	4639-DT-EPHI-1	2664A-EPHI-2	1856A-EPHI-2	E18-1380G-EPHI-1	2659A-EPHI-2	2615A-EPHI-2	3194-DT-EPHI-1	4451T-EPHI-1	4637-DT-EPHI-1	3771T-EPHI-1	1765A-EPHI-1	2862A-EPHI-2	E18-1383G-EPHI-1	2110A-EPHI-1	2954A-EPHI-2	1853DA-EPHI-1	4141T-EPHI-1	5313T-EPHI-1	1415A-EPHI-1	2699A-EPHI-2	1923DA-EPHI-1	5431T-EPHI-1	2424-A-EPHI-1	2276A-EPHI-1	2186A-EPHI-1	2139A-EPHI-1	1694A-EPHI-1	2601A-EPHI-2	2282A-EPHI-1	2616A-EPHI-2	2027A-EPHI-2	1788A-EPHI-2	3392T-EPHI-1	2647A-EPHI-2	3111-DT-EPHI-1	5596A-EPHI-2	3789A-EPHI-2	2280A-EPHI-1	E18-1382G-EPHI-1	1395A-EPHI-2	2620A-EPHI-2	2855A-EPHI-2	2765A-EPHI-1	5584T-EPHI-1	3810-A-EPHI-1	2668A-EPHI-2	2433A-EPHI-1	E18-1363G-EPHI-1	3114-DT-EPHI-1	4149DT-EPHI-1	1977A-EPHI-2	2684A-EPHI-2	1145A-EPHI-2	2178-A-EPHI-1	1406A-EPHI-2	3387-DT-EPHI-1	1133A-EPHI-2	3108-DT-EPHI-1	2437A-EPHI-1	2049A-EPHI-2	1140A-EPHI-2	3385T-EPHI-1	4861A-EPHI-2	1332A-EPHI-2	2016A-EPHI-2	5499T-EPHI-1	1416A-EPHI-1	E18-1432G-EPHI-1	1091A-EPHI-2	5774T-EPHI-1	1127A-EPHI-2	2000A-EPHI-2	1327A-EPHI-2	1919A-EPHI-2	2360A-EPHI-1	3107-DT-EPHI-1	2100A-EPHI-1	3196T-EPHI-1	2144A-EPHI-1	1831A-EPHI-2	1355A-EPHI-2	5089A-EPHI-2	1320A-EPHI-2	1928A-EPHI-2	2941A-EPHI-2	1064A-EPHI-2	2864DA-EPHI-1	1913A-EPHI-2	2960A-EPHI-2	2177A-EPHI-2	1419A-EPHI-1	1103A-EPHI-2	3396T-EPHI-1	2001A-EPHI-2	2457-A-EPHI-1	2596A-EPHI-1	3786T-EPHI-1	3102-DT-EPHI-1	3390-DT-EPHI-1	2458-A-EPHI-1	E18-1457G-EPHI-1	1099A-EPHI-2	2860A-EPHI-2	1082A-EPHI-2	3056-DT-EPHI-1	2648A-EPHI-2	1337A-EPHI-2	1321A-EPHI-2	4464T-EPHI-1	4641-A-EPHI-1	1974A-EPHI-2	4465T-EPHI-1	1354A-EPHI-2	5433T-EPHI-1	1358A-EPHI-2	1124A-EPHI-2	1076-A-EPHI-2	1072A-EPHI-2	5492T-EPHI-1	1333A-EPHI-2	1339A-EPHI-2	1330A-EPHI-2	3117-DT-EPHI-1	5920A-EPHI-2	5912A-EPHI-2	1428A-EPHI-1	1294A-EPHI-2	2850A-EPHI-2	2722A-EPHI-2	1077A-EPHI-2	1852A-EPHI-2	3128T-EPHI-1	1338A-EPHI-2	1128A-EPHI-2	2486A-EPHI-1	5125T-EPHI-1	1396A-EPHI-2	3126T-EPHI-1	3133T-EPHI-1	3439DT-EPHI-1	2718A-EPHI-2	4546T-EPHI-1	1134A-EPHI-2	2295-A-EPHI-1	5372T-EPHI-1	2181A-EPHI-1	1313A-EPHI-2	2251A-EPHI-1	2116DA-EPHI-1	3690T-EPHI-1	1118A-EPHI-2	4899T-EPHI-1	5082T-EPHI-1	1066A-EPHI-2	2727A-EPHI-2	1768A-EPHI-2	1918A-EPHI-2	2272A-EPHI-1	5604A-EPHI-2	1314A-EPHI-2	1836DA-EPHI-1	2447A-EPHI-1	1309A-EPHI-2	1391A-EPHI-2	2288A-EPHI-1	2645A-EPHI-2	1941A-EPHI-2	5292T-EPHI-1	3115-DT-EPHI-1	2024A-EPHI-2	3932T-EPHI-1	3448T-EPHI-1	2994A-EPHI-2	2104A-EPHI-1	2933A-EPHI-2	2426-A-EPHI-1	1851DA-EPHI-1	1351A-EPHI-2	1122A-EPHI-2	5374T-EPHI-1	3132T-EPHI-1	2688A-EPHI-2	2906A-EPHI-2	1334A-EPHI-2	4628T-EPHI-1	2097A-EPHI-1	3184T-EPHI-1	4632-DT-EPHI-1	2575A-EPHI-1	2598A-EPHI-1	1970A-EPHI-2	1770A-EPHI-1	2442-DA-EPHI-1	5376T-EPHI-1	1856DA-EPHI-1	5491T-EPHI-1	2606DA-EPHI-1	2953A-EPHI-2	4375T-EPHI-1	1336A-EPHI-2	3191T-EPHI-1	1826A-EPHI-2	4898DT-EPHI-1	1909DA-EPHI-1	5269DT-EPHI-1	2448A-EPHI-1	1121A-EPHI-2	1113A-EPHI-2	2563A-EPHI-1	2291A-EPHI-1	1317A-EPHI-2	1424A-EPHI-2	2950-A-EPHI-2	2465A-EPHI-1	1089A-EPHI-2	1921A-EPHI-2	1994DA-EPHI-1	2446A-EPHI-1	2435A-EPHI-1	2572A-EPHI-1	1331DA-EPHI-1	2091-DA-EPHI-1	2766A-EPHI-2	1405-A-EPHI-2	3806T-EPHI-1	5919T-EPHI-1	1143A-EPHI-2	2631A-EPHI-2	1142A-EPHI-2	2585A-EPHI-1	1772-A-EPHI-1	1074A-EPHI-2	2700A-EPHI-2	1959A-EPHI-2	5597T-EPHI-1	2694A-EPHI-2	1295A-EPHI-2	2698A-EPHI-2	3318-DT-EPHI-1	1920A-EPHI-2	2936A-EPHI-2	2079A-EPHI-2	2605A-EPHI-2	1317-A-EPHI-2	5128T-EPHI-1	4248A-EPHI-2	2875A-EPHI-2	E18-1364G-EPHI-1	2415-A-EPHI-1	4374T-EPHI-1	2083A-EPHI-2	2298A-EPHI-1	2679A-EPHI-2	1068A-EPHI-2	3110T-EPHI-1	2702A-EPHI-2	2481A-EPHI-1	1139A-EPHI-2	2284A-EPHI-1	1315A-EPHI-2	5594T-EPHI-1	1787A-EPHI-2	1136A-EPHI-2	5311T-EPHI-1	2274A-EPHI-1	2613A-EPHI-2	2910A-EPHI-2	1341A-EPHI-2	1927A-EPHI-2	2461A-EPHI-1	1073A-EPHI-2	2715A-EPHI-2	2935A-EPHI-2	1761A-EPHI-1	1096A-EPHI-2	1291A-EPHI-2	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chr1	100608	.	A	G	94860.3	.	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chr1	138823	.	C	T	451408	.	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chr1	139191	.	C	T	1.48218e+06	.	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chr1	140820	.	A	C	231198	.	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chr1	155939	.	G	A	795782	.	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chr1	167899	.	C	T	63604.8	.	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chr1	239376	.	G	T	285903	.	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chr1	244080	.	T	C	516999	.	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chr1	308232	.	C	T	218254	.	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chr1	308385	.	G	C	285141	.	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chr1	309042	.	C	T	10083.8	.	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chr1	349253	.	A	G	252160	.	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chr1	455877	.	A	C	52842.1	.	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chr1	472576	.	A	T	562365	.	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chr1	472583	.	A	G	563247	.	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chr1	480434	.	G	A	1203.74	.	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chr1	487057	.	C	T	618349	.	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chr1	497883	.	A	G	1.25816e+06	.	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chr1	498090	.	A	C	186033	.	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chr1	506069	.	A	G	345032	.	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chr1	532656	.	G	A	95767.6	.	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chr1	536003	.	T	C	187621	.	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chr1	537427	.	A	G	582968	.	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chr2	199406	.	G	T	1.05725e+06	.	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chr2	206291	.	A	G	374265	.	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chr2	207266	.	C	T	895447	.	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chr2	222175	.	T	C	370268	.	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chr2	276069	.	C	T	25063.4	.	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chr2	278010	.	G	T	58478.2	.	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chr2	292382	.	A	T	227635	.	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chr2	322398	.	A	G	448288	.	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chr2	322746	.	T	C	2.03357e-11	.	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chr2	322845	.	G	A	2281.28	.	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chr2	322863	.	C	T	233.922	.	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chr2	323022	.	T	A	34696.2	.	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chr2	366771	.	G	A	296816	.	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chr2	375135	.	T	A	1.15634e+06	.	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chr2	375427	.	G	A	1.35515e+06	.	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chr2	375825	.	A	C	738543	.	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chr2	375838	.	G	A	9104.28	.	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chr2	375922	.	T	A	593775	.	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chr2	376045	.	A	G	5816.35	.	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chr2	376222	.	A	G	55952.2	.	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chr2	379046	.	C	T	831550	.	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chr2	401697	.	G	A	225.266	.	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chr2	480862	.	A	C	593438	.	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chr2	501972	.	A	G	559115	.	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chr2	503169	.	T	C	160405	.	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chr2	504300	.	A	C	4143.49	.	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chr2	512104	.	T	C	0	.	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chr2	516865	.	C	T	332817	.	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chr2	519370	.	G	A	1.84934e-08	.	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chr2	519382	.	A	G	586991	.	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chr2	549049	.	C	T	222627	.	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chr2	550704	.	C	T	86431.2	.	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chr2	554110	.	G	A	12777	.	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chr2	558953	.	A	G	96288.8	.	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chr2	579278	.	A	T	835.407	.	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chr2	608790	.	A	G	642149	.	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chr2	617482	.	C	T	2065.7	.	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chr2	623146	.	T	C	270993	.	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chr2	629060	.	T	C	22252.5	.	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chr2	629375	.	C	G	6.08221e-11	.	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chr2	629996	.	C	A	12927.8	.	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chr2	630135	.	C	T	7132.18	.	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chr2	630150	.	T	C	1.36857e-11	.	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chr2	630545	.	C	T	11224.4	.	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chr2	630737	.	C	T	9207.76	.	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chr2	631092	.	T	C	1.99654e-11	.	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chr2	631190	.	T	A	0	.	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chr2	651509	.	A	G	524589	.	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chr2	658385	.	C	T	7526.74	.	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chr2	671972	.	A	C	905534	.	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chr2	693095	.	T	A	88775	.	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chr2	709850	.	C	T	389.545	.	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chr2	712208	.	A	G	17777.8	.	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chr2	797146	.	A	T	216587	.	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chr2	798866	.	A	G	25906.7	.	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chr2	798907	.	C	T	25465.2	.	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chr2	800017	.	G	A	267433	.	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chr2	800695	.	A	G	1.33305e+06	.	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chr2	805983	.	A	G	115818	.	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chr2	814288	.	C	T	11793.5	.	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chr2	814329	.	A	G	12064.3	.	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chr2	814702	.	A	G	21729.9	.	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chr2	839178	.	C	T	35785.9	.	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chr2	839620	.	T	C	572281	.	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chr2	841296	.	C	T	128802	.	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chr2	841795	.	T	G	92270.7	.	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chr2	841819	.	C	T	206342	.	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chr2	845795	.	C	T	126901	.	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chr3	106144	.	A	G	427578	.	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chr3	109722	.	G	A	351136	.	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chr3	117765	.	C	A	13986.8	.	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chr3	124534	.	C	T	337071	.	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chr3	140444	.	G	A	713668	.	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chr3	142944	.	G	T	1.27987e+06	.	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chr3	183105	.	T	A	43770.8	.	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chr3	185604	.	C	T	283.329	.	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chr3	282671	.	A	G	17678.4	.	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chr3	302963	.	A	G	484999	.	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chr3	341291	.	A	G	47187.2	.	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chr3	354592	.	T	C	346225	.	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chr3	444950	.	A	T	272.924	.	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chr3	469760	.	C	T	56173	.	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chr3	474002	.	T	C	38884.5	.	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chr3	507008	.	G	A	866037	.	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chr3	507451	.	C	T	559330	.	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chr3	510782	.	A	G	92498	.	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chr3	514084	.	T	C	639420	.	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chr3	622763	.	G	C	364144	.	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chr3	645241	.	G	A	582006	.	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chr3	654452	.	G	A	1.63899e+06	.	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chr3	674673	.	C	A	1045.99	.	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chr3	679453	.	G	A	201016	.	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chr3	680179	.	G	A	1.52241e+06	.	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chr3	730277	.	A	G	43024.1	.	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chr3	750882	.	A	G	0.0319208	.	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chr3	752418	.	A	T	37376.7	.	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chr3	796056	.	T	C	2.9223e-11	.	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chr3	805130	.	G	A	32605.7	.	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chr3	812699	.	C	T	18867.5	.	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chr3	827900	.	A	T	498.85	.	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chr3	831268	.	T	C	62149.7	.	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chr3	844117	.	A	T	51088.5	.	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chr3	849691	.	G	T	54630.7	.	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chr3	849850	.	C	T	5653.24	.	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chr3	853052	.	T	C	78766.2	.	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chr3	879466	.	A	C	50352.7	.	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chr3	887238	.	T	C	114863	.	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chr3	888429	.	G	A	2496.19	.	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chr3	896996	.	G	A	133637	.	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chr3	897800	.	C	G	15851.5	.	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chr3	916719	.	C	T	2.38854e-09	.	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chr3	924907	.	G	T	970907	.	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chr3	943993	.	G	A	32557.2	.	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chr3	988828	.	G	T	34015.3	.	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chr4	124690	.	T	C	590964	.	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chr4	139405	.	A	G	8448.71	.	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chr4	143683	.	C	T	479455	.	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chr4	143869	.	A	C	121462	.	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chr4	208960	.	G	T	735708	.	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chr4	242143	.	G	C	58991.7	.	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chr4	249905	.	C	G	172938	.	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chr4	306875	.	C	T	636822	.	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chr4	358245	.	C	T	162347	.	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chr4	390170	.	C	T	324510	.	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chr4	413424	.	C	T	14579.8	.	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chr4	415158	.	G	A	4326.65	.	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chr4	415159	.	T	C	620.641	.	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chr4	418411	.	A	G	196333	.	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chr4	450161	.	C	T	3642.15	.	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chr4	487211	.	A	T	1.20252e+06	.	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chr4	508879	.	T	G	603020	.	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chr4	514993	.	A	T	145590	.	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chr4	515611	.	A	G	1470.8	.	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chr4	515842	.	C	T	491200	.	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chr4	516697	.	A	G	10624.2	.	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chr4	630638	.	A	G	87462.1	.	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chr4	630923	.	C	T	328565	.	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chr4	635087	.	C	T	198702	.	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chr4	659190	.	C	A	1.02414e+06	.	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chr4	668673	.	A	G	601143	.	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chr4	683072	.	A	G	234240	.	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chr4	684674	.	T	C	105557	.	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chr4	691520	.	A	G	3642.33	.	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chr4	692160	.	G	A	404541	.	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chr4	738775	.	G	A	196817	.	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chr4	771505	.	A	G	550523	.	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chr4	781969	.	G	A	23562.7	.	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chr4	787660	.	A	G	28176.2	.	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chr4	791143	.	A	G	254470	.	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chr4	797704	.	C	T	499644	.	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chr4	802705	.	G	A	501896	.	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chr4	831954	.	A	G	85278.6	.	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chr4	832143	.	T	C	570069	.	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chr4	835428	.	T	C	223259	.	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chr4	836490	.	C	T	142585	.	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chr4	838218	.	C	A	296984	.	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chr4	839310	.	A	G	1.31092e+06	.	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chr4	856066	.	T	A	1.37937e-11	.	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chr4	856599	.	A	G	447948	.	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chr4	865237	.	C	A	13462.3	.	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chr4	889062	.	A	T	785801	.	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chr4	897462	.	C	A	22691.6	.	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chr4	898407	.	A	C	449427	.	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chr4	899970	.	T	C	308015	.	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chr4	910225	.	G	T	601726	.	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chr4	925627	.	G	A	231891	.	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chr4	927454	.	A	G	215020	.	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chr4	930011	.	A	G	24954	.	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chr4	932894	.	A	G	166932	.	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chr4	933875	.	T	C	48638.1	.	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chr4	989663	.	G	A	113039	.	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chr4	992024	.	G	T	246987	.	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chr4	1029658	.	T	A	0	.	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chr4	1032346	.	T	A	597929	.	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chr4	1032565	.	T	A	88382.5	.	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chr4	1032592	.	A	G	1.15456e+06	.	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chr4	1035493	.	G	A	39118.5	.	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chr4	1035499	.	A	G	222.821	.	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chr4	1035500	.	G	A	38211.1	.	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chr4	1037890	.	C	G	165585	.	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chr4	1038820	.	C	T	229361	.	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chr4	1050905	.	C	T	15890.2	.	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chr4	1065188	.	C	G	138475	.	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chr4	1071662	.	C	T	1426.3	.	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chr4	1089818	.	G	T	121294	.	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chr4	1096152	.	A	C	873000	.	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chr4	1097601	.	T	C	0	.	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chr4	1113532	.	C	A	53992.9	.	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chr4	1113552	.	A	T	280808	.	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chr4	1121457	.	C	G	1.65441e+06	.	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chr4	1121472	.	T	A	1.65265e+06	.	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chr4	1122147	.	A	C	1.03923e+06	.	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chr4	1123679	.	A	T	820863	.	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chr4	1124303	.	C	T	88.8228	.	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chr4	1128499	.	G	A	18478.3	.	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chr5	132201	.	T	C	147687	.	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chr5	144161	.	T	G	652108	.	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chr5	146696	.	A	G	567816	.	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chr5	198142	.	A	T	269987	.	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chr5	198958	.	A	G	127237	.	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chr5	224735	.	G	A	121987	.	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chr5	277520	.	T	A	176266	.	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chr5	324155	.	C	T	41861	.	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chr5	345188	.	G	A	95888.8	.	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chr5	350933	.	G	A	109231	.	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chr5	351005	.	G	A	581255	.	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chr5	352439	.	A	G	435391	.	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chr5	360322	.	G	A	54.1998	.	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chr5	364200	.	T	G	1.02749e+06	.	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chr5	369740	.	T	C	76322.3	.	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chr5	391225	.	T	C	34184.2	.	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chr5	398584	.	C	T	493351	.	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chr5	404998	.	T	C	1.21582e-11	.	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chr5	426361	.	G	A	37856.8	.	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chr5	472369	.	G	A	890139	.	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chr5	474904	.	G	A	151785	.	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chr5	476050	.	A	G	161435	.	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chr5	477271	.	A	G	1472.81	.	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chr5	477676	.	T	C	252205	.	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chr5	477900	.	A	G	218420	.	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chr5	480337	.	A	C	11674.9	.	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chr5	503395	.	C	A	411425	.	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chr5	507871	.	A	T	2399.83	.	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chr5	571202	.	C	G	16463.5	.	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chr5	585378	.	A	G	1642.59	.	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chr5	598347	.	C	T	279732	.	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chr5	613888	.	C	T	11487.6	.	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chr5	615420	.	G	A	1818.37	.	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chr5	622364	.	C	T	1.02079e+06	.	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chr5	626470	.	C	T	11259.8	.	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chr5	632372	.	T	A	0	.	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chr5	648378	.	G	A	20340.5	.	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chr5	679399	.	T	C	137896	.	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chr5	697362	.	T	C	1.15411e-11	.	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chr5	734301	.	C	T	736135	.	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chr5	743364	.	G	A	10246.6	.	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chr5	765857	.	T	C	1.16954e-11	.	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chr5	771157	.	T	C	0	.	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chr5	776283	.	A	G	3634.78	.	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chr5	780325	.	A	C	71497.2	.	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chr5	797269	.	G	A	3.59966e+06	.	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chr5	797395	.	G	A	1.52777e+06	.	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chr5	801588	.	A	T	1.67504e+06	.	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chr5	803584	.	A	G	4843.33	.	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chr5	814159	.	C	A	176547	.	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chr5	826855	.	A	G	370370	.	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chr5	836456	.	C	A	7.53515e-08	.	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chr5	840339	.	C	T	317273	.	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chr5	851719	.	A	G	183786	.	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chr5	855823	.	T	C	1.30946e+06	.	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chr5	860853	.	G	A	161425	.	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chr5	893494	.	A	G	82570.5	.	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chr5	897486	.	A	G	39564.1	.	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chr5	913028	.	A	G	5.06305e-08	.	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chr5	921466	.	A	G	16091.2	.	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chr5	931503	.	T	A	2.99636e-11	.	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chr5	940677	.	T	C	4.45596e-11	.	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chr5	958145	.	A	T	5575.31	.	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chr5	960409	.	T	C	0	.	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chr5	967820	.	A	G	12351.6	.	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chr5	981740	.	A	T	195480	.	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chr5	999556	.	T	A	468470	.	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chr5	1007374	.	G	A	610292	.	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chr5	1009091	.	A	C	0.000285639	.	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chr5	1037173	.	A	T	43247.3	.	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chr5	1038270	.	G	T	810692	.	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chr5	1042252	.	G	A	11380.2	.	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chr5	1042561	.	T	G	6.60371e-12	.	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chr5	1043303	.	G	A	918920	.	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chr5	1063005	.	T	G	4.2739e-12	.	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chr5	1092309	.	C	T	144332	.	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chr5	1105159	.	T	G	636234	.	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chr5	1107403	.	C	T	0.00627132	.	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chr5	1109432	.	A	G	1.64329e+06	.	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chr5	1114182	.	A	G	58152.1	.	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chr5	1133651	.	A	G	52057.6	.	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chr5	1134206	.	A	G	54397.9	.	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chr5	1136741	.	T	G	468096	.	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chr5	1161287	.	A	G	66745.2	.	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chr5	1178426	.	C	A	50875.6	.	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chr5	1187705	.	G	A	2122.09	.	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chr5	1188335	.	G	A	542373	.	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chr5	1188491	.	A	G	347705	.	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chr5	1188542	.	T	C	9.813e-12	.	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chr5	1196977	.	G	A	1.03563e+06	.	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chr5	1196989	.	A	G	1.38598e+06	.	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chr5	1303863	.	A	G	12552.7	.	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chr6	114745	.	T	C	910422	.	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chr6	120018	.	G	A	297.836	.	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chr6	231858	.	T	C	200566	.	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chr6	237194	.	T	G	281892	.	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chr6	312414	.	G	C	158348	.	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chr6	321567	.	A	C	85006.7	.	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chr6	382976	.	G	C	348632	.	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chr6	390001	.	G	A	668712	.	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chr6	408976	.	C	T	1616.22	.	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chr6	529076	.	G	A	95989	.	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chr6	590606	.	A	C	56535.3	.	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chr6	634139	.	T	A	60191.6	.	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chr6	636044	.	A	C	21564.9	.	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chr6	639086	.	C	T	121517	.	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chr6	697009	.	A	T	989910	.	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chr6	780026	.	T	C	330596	.	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chr6	824200	.	C	T	609447	.	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chr6	847198	.	A	T	915584	.	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chr6	887805	.	G	T	1.22408e+06	.	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chr6	938238	.	A	G	404715	.	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chr6	951402	.	G	T	1561.93	.	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chr6	1007592	.	G	A	64.5252	.	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chr6	1017274	.	G	C	292184	.	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chr6	1027653	.	A	G	74362.1	.	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chr6	1029663	.	T	C	0	.	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chr6	1040344	.	G	A	1.18876e+06	.	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chr6	1048741	.	T	C	0	.	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chr6	1056479	.	A	G	855323	.	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chr6	1114928	.	A	G	666023	.	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chr6	1115191	.	A	G	636868	.	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chr6	1115372	.	G	A	3.23071e+06	.	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chr6	1115453	.	A	C	3.43089e+06	.	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chr6	1116314	.	T	C	778421	.	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chr6	1116592	.	G	T	253732	.	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chr6	1117000	.	T	C	1.03891e+06	.	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chr6	1120459	.	A	G	92.8597	.	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chr6	1136295	.	T	C	344097	.	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chr6	1151994	.	A	G	1.6882e+06	.	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chr6	1197298	.	T	G	809439	.	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chr6	1206227	.	A	T	2.3311e+06	.	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chr6	1206498	.	G	A	2.39637e+06	.	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chr6	1215233	.	G	A	948385	.	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chr6	1224777	.	T	A	838409	.	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chr6	1235507	.	C	T	333096	.	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chr6	1238829	.	A	T	963433	.	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chr6	1252136	.	T	C	2.23415e-11	.	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chr6	1256674	.	A	G	727214	.	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chr6	1260016	.	A	T	137953	.	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chr6	1266060	.	G	A	555940	.	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chr6	1267260	.	T	C	1.61301e+06	.	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chr6	1268187	.	A	T	124170	.	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chr6	1268778	.	A	G	1.44016e+06	.	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chr6	1268973	.	C	T	58528	.	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chr6	1280801	.	G	A	342461	.	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chr6	1282691	.	G	A	743300	.	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chr6	1282748	.	C	T	1.75027e+06	.	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chr6	1289212	.	A	G	300523	.	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chr7	105245	.	C	G	2.45289e+06	.	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chr7	105280	.	C	T	832842	.	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chr7	105304	.	T	C	2.14836e+06	.	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chr7	105510	.	C	T	1972.5	.	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chr7	157547	.	C	T	623673	.	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chr7	157565	.	A	G	627708	.	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chr7	157601	.	G	A	623212	.	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chr7	162203	.	C	T	5984.21	.	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chr7	199193	.	C	T	241787	.	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chr7	203171	.	T	A	2.08912e-11	.	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chr7	204987	.	T	A	1.3732e-11	.	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chr7	226177	.	A	G	83031	.	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chr7	226222	.	A	G	81815.2	.	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chr7	227275	.	C	T	1.30399e+06	.	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chr7	228601	.	G	A	373956	.	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chr7	276094	.	T	C	156245	.	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chr7	298916	.	G	A	296507	.	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chr7	354126	.	C	T	264916	.	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chr7	358917	.	T	C	0	.	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chr7	370875	.	A	G	452977	.	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chr7	375471	.	T	A	106844	.	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chr7	375818	.	T	C	334441	.	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chr7	377477	.	C	A	49887.4	.	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chr7	378669	.	G	A	621392	.	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chr7	383137	.	A	C	417606	.	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chr7	383166	.	C	T	410768	.	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chr7	384302	.	C	T	135664	.	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chr7	385921	.	C	T	1.44424e+06	.	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chr7	392078	.	T	G	1.27498e+06	.	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chr7	403337	.	G	T	466107	.	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chr7	405838	.	G	T	345134	.	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chr7	406231	.	C	T	360637	.	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chr7	408697	.	A	C	729347	.	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chr7	408743	.	G	A	2.54464e+06	.	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chr7	409108	.	C	T	103668	.	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chr7	410036	.	A	G	296837	.	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chr7	410132	.	C	G	13238.8	.	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chr7	411244	.	T	C	0	.	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chr7	411352	.	C	T	24025.7	.	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chr7	414615	.	A	T	1.86153e+06	.	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chr7	415137	.	C	T	1.48413e+06	.	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chr7	416615	.	T	A	13922.4	.	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chr7	417360	.	C	A	139187	.	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chr7	418378	.	G	A	42593	.	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chr7	420336	.	A	G	28036.1	.	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chr7	420908	.	C	G	1.84028e+06	.	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chr7	420925	.	G	C	1.70576e+06	.	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chr7	421420	.	G	A	583039	.	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chr7	426245	.	G	T	849009	.	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chr7	426524	.	G	A	106510	.	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chr7	426753	.	A	T	1.02272e+06	.	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chr7	430364	.	T	G	1.22796e+06	.	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chr7	431908	.	A	T	3316.32	.	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chr7	432784	.	T	A	1.97734e+06	.	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chr7	433609	.	A	T	437781	.	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chr7	435368	.	T	C	541397	.	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chr7	435497	.	A	T	334360	.	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chr7	438905	.	G	A	307408	.	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chr7	449987	.	C	T	890888	.	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chr7	450032	.	A	G	883260	.	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chr7	451331	.	C	T	78765.9	.	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chr7	455494	.	A	G	1.29279e+06	.	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chr7	456774	.	G	A	600055	.	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chr7	461191	.	C	T	590116	.	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chr7	464800	.	C	T	48386.9	.	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chr7	465019	.	C	T	382481	.	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chr7	469248	.	A	C	233907	.	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chr7	471237	.	T	C	402414	.	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chr7	472858	.	C	T	20179.1	.	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chr7	473203	.	G	A	1.15417e+06	.	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chr7	475324	.	G	A	79108.6	.	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chr7	489666	.	C	T	629923	.	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chr7	492639	.	T	C	2.9007e-12	.	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chr7	495462	.	T	A	384366	.	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chr7	497580	.	A	T	943.583	.	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chr7	501191	.	G	A	9668.76	.	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chr7	505865	.	G	A	480463	.	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chr7	506984	.	C	A	67689.1	.	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chr7	612906	.	A	G	3.38033e+06	.	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chr7	614531	.	T	C	761709	.	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chr7	614645	.	C	A	623385	.	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chr7	618007	.	T	C	1.61068e+06	.	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chr7	619279	.	G	A	207791	.	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chr7	619738	.	T	C	290273	.	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chr7	619957	.	G	C	467339	.	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chr7	631383	.	G	A	12104.2	.	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chr7	635254	.	C	T	567993	.	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chr7	635335	.	G	A	582435	.	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chr7	674338	.	A	G	341659	.	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chr7	678341	.	G	A	48625.2	.	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chr7	691736	.	C	G	430668	.	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chr7	692714	.	T	C	1.40406e-11	.	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chr7	699262	.	G	C	842878	.	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chr7	700615	.	T	C	490251	.	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chr7	704373	.	A	G	225230	.	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chr7	706335	.	T	C	311892	.	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chr7	725998	.	G	A	428.425	.	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chr7	726594	.	A	G	326.836	.	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chr7	726661	.	T	A	1.37937e-11	.	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chr7	730051	.	G	A	170869	.	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chr7	730791	.	G	C	1031.77	.	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chr7	731035	.	C	A	3.89743e-11	.	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chr7	736978	.	A	C	240120	.	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chr7	743191	.	T	C	309466	.	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chr7	744613	.	C	T	16562.2	.	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chr7	774722	.	T	C	375376	.	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chr7	814407	.	G	A	334914	.	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chr7	816733	.	A	G	655266	.	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chr7	817583	.	G	C	61305.7	.	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chr7	884366	.	C	T	1.56029e+06	.	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chr7	884384	.	T	C	1.56107e+06	.	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chr7	932156	.	T	A	2.23724e-11	.	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chr7	956463	.	A	G	304.672	.	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chr7	1008272	.	T	C	65871.1	.	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chr7	1011137	.	T	C	239323	.	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chr7	1031428	.	A	G	19847.7	.	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chr7	1048937	.	T	G	0	.	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chr7	1053154	.	G	T	130.116	.	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chr7	1056801	.	A	T	366389	.	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chr7	1105526	.	G	A	816748	.	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chr7	1111528	.	G	A	25704.3	.	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chr7	1111529	.	G	C	905.237	.	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chr7	1133686	.	T	C	0	.	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chr7	1170209	.	T	C	9.19583e-12	.	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chr7	1234511	.	C	T	2.36348e+06	.	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chr7	1256654	.	A	G	3.20844e+06	.	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chr7	1311891	.	A	G	17387.7	.	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chr7	1369199	.	G	A	20959.6	.	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chr8	97831	.	C	T	604632	.	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chr8	102094	.	T	C	8.00778e-12	.	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chr8	149943	.	A	T	45319	.	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chr8	157014	.	A	G	71605.7	.	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chr8	157015	.	C	A	2366.61	.	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chr8	305487	.	A	T	83524.5	.	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chr8	339637	.	A	T	80165.9	.	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chr8	340367	.	T	G	971083	.	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chr8	340944	.	T	C	301072	.	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chr8	395711	.	A	G	272358	.	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chr8	396812	.	A	G	1.24617e+06	.	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chr8	406969	.	C	T	80900.7	.	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chr8	406993	.	C	T	81084.1	.	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chr8	411216	.	G	A	63309.2	.	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chr8	416476	.	T	C	4.99907e-12	.	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chr8	416482	.	G	A	16600.4	.	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chr8	416491	.	G	A	17073.6	.	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chr8	416821	.	C	T	502699	.	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chr8	417760	.	A	G	100230	.	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chr8	422094	.	T	C	113338	.	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chr8	422166	.	G	A	3.54918e+06	.	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chr8	422226	.	A	C	81762.1	.	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chr8	424167	.	T	C	657292	.	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chr8	468669	.	T	C	769501	.	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chr8	475920	.	C	T	58155.1	.	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chr8	476310	.	A	T	361367	.	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chr8	477453	.	A	G	97935.9	.	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chr8	477454	.	T	C	967828	.	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chr8	477797	.	A	T	31448.1	.	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chr8	478683	.	A	T	14541.8	.	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chr8	483714	.	A	G	541379	.	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chr8	484954	.	A	G	10539.3	.	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chr8	486805	.	G	A	373893	.	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chr8	486832	.	A	G	378900	.	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chr8	486841	.	T	C	395379	.	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chr8	490546	.	A	G	429449	.	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chr8	491465	.	C	T	207148	.	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chr8	492502	.	T	A	738583	.	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chr8	497184	.	T	A	231581	.	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chr8	499624	.	T	G	1.42566e-11	.	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chr8	500772	.	A	T	24164.4	.	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chr8	501054	.	T	C	1.97117e+06	.	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chr8	501390	.	A	C	338832	.	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chr8	501572	.	T	A	0	.	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chr8	505739	.	A	G	772661	.	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chr8	509321	.	G	A	1.52781e+06	.	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chr8	526923	.	A	C	609232	.	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chr8	529764	.	T	A	11896.6	.	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chr8	542477	.	A	T	52167.2	.	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chr8	548801	.	G	A	262206	.	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chr8	549993	.	A	G	733556	.	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chr8	551179	.	C	G	1913.52	.	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chr8	562548	.	A	C	110219	.	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chr8	562617	.	T	A	110490	.	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chr8	572299	.	A	G	921770	.	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chr8	585466	.	G	T	116645	.	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chr8	585841	.	C	G	1.074e+06	.	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chr8	585854	.	A	C	1.5545e+06	.	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chr8	591335	.	T	C	0	.	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chr8	591344	.	C	T	2924.25	.	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chr8	599634	.	A	G	0	.	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chr8	619138	.	A	G	1.5074e+06	.	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chr8	676681	.	A	G	12308.5	.	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chr8	691096	.	C	T	19828.2	.	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chr8	693543	.	A	G	2063.43	.	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chr8	701614	.	A	G	568461	.	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chr8	703454	.	C	A	216.137	.	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chr8	703997	.	T	C	0	.	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chr8	706168	.	A	G	35694.3	.	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chr8	706777	.	A	T	111406	.	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chr8	713998	.	A	T	0	.	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chr8	724801	.	C	T	105185	.	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chr8	806841	.	T	A	293738	.	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chr8	845787	.	T	A	1.56583e+06	.	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chr8	847329	.	C	T	770814	.	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chr8	885980	.	A	G	895725	.	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chr8	919126	.	C	T	224424	.	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chr8	925409	.	A	G	69069.6	.	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chr8	933060	.	T	C	579673	.	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chr8	958663	.	A	G	4672.97	.	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chr8	987074	.	C	T	3666.68	.	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chr8	991389	.	G	T	858628	.	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chr8	1062754	.	C	T	702080	.	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chr8	1063363	.	A	G	70494.1	.	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chr8	1099695	.	G	A	450694	.	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chr8	1102025	.	G	A	778030	.	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chr8	1113495	.	G	A	32035.8	.	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chr8	1115375	.	G	A	390941	.	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chr8	1116300	.	A	G	474083	.	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chr8	1117245	.	A	T	82318.1	.	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chr8	1144251	.	A	T	147761	.	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chr8	1174850	.	G	A	156108	.	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chr8	1176413	.	T	C	568471	.	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chr8	1178845	.	C	T	1565.66	.	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chr8	1314033	.	A	T	646080	.	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chr8	1325396	.	G	T	33006.2	.	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chr8	1363303	.	T	C	694281	.	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chr9	123040	.	A	G	947624	.	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chr9	150411	.	A	G	8579.86	.	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chr9	157982	.	T	C	607666	.	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chr9	225542	.	C	T	17183.7	.	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chr9	248414	.	T	C	0	.	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chr9	283356	.	T	G	919240	.	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chr9	283868	.	A	G	201985	.	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chr9	375323	.	T	C	891374	.	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chr9	512739	.	G	C	70736.3	.	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chr9	586708	.	A	G	75050.6	.	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chr9	596041	.	A	G	1.14795e+06	.	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chr9	596332	.	G	A	1.84721e+06	.	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chr9	596674	.	T	C	722421	.	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chr9	597897	.	A	G	1.11848e+06	.	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chr9	597966	.	C	T	1.11249e+06	.	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chr9	602381	.	C	T	527392	.	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chr9	631776	.	C	T	1.18706e+06	.	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chr9	677379	.	T	C	1.88237e-12	.	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chr9	678471	.	A	G	361776	.	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chr9	681785	.	T	C	2.2249e-11	.	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chr9	685667	.	C	A	333442	.	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chr9	706643	.	C	T	341338	.	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chr9	738710	.	A	C	2290.73	.	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chr9	747864	.	T	C	818585	.	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chr9	778075	.	A	T	773663	.	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chr9	817567	.	T	C	241056	.	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chr9	831911	.	C	T	631.014	.	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chr9	917264	.	A	G	937717	.	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chr9	1076011	.	C	T	329789	.	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chr9	1080391	.	G	T	157930	.	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chr9	1085080	.	A	C	957133	.	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chr9	1111456	.	A	T	249064	.	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chr9	1129679	.	C	T	768029	.	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chr9	1178903	.	T	C	1.55835e-12	.	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chr9	1179069	.	G	A	1186.31	.	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chr9	1179228	.	G	A	43530.1	.	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chr9	1179855	.	A	C	935947	.	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chr9	1202426	.	A	C	218170	.	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chr9	1208483	.	A	C	245153	.	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chr9	1316466	.	C	T	161.78	.	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chr9	1347188	.	T	C	1.19066e+06	.	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chr9	1379201	.	C	A	428824	.	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chr9	1379494	.	A	T	689995	.	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chr9	1406587	.	G	A	26724.1	.	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chr10	93086	.	A	G	145690	.	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chr10	108733	.	C	T	865818	.	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chr10	112973	.	A	G	27535.1	.	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chr10	113505	.	C	A	952303	.	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chr10	113582	.	A	T	860004	.	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chr10	113618	.	A	G	375508	.	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chr10	115205	.	G	A	781.5	.	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chr10	115507	.	G	T	908648	.	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chr10	122738	.	G	A	199803	.	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chr10	169428	.	T	C	290009	.	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chr10	189952	.	T	C	23817.5	.	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chr10	222495	.	G	T	432806	.	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chr10	223211	.	G	A	2.46854e+06	.	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chr10	225629	.	G	A	281794	.	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chr10	238016	.	A	G	9204.17	.	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chr10	317581	.	A	T	102295	.	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chr10	325616	.	A	G	559163	.	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chr10	341106	.	A	G	35302.7	.	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chr10	361684	.	A	G	492793	.	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chr10	375664	.	T	C	0	.	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chr10	382041	.	C	A	898648	.	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chr10	414789	.	T	G	402223	.	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chr10	424305	.	A	G	10550.6	.	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chr10	425295	.	C	A	186606	.	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chr10	454626	.	C	A	712892	.	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chr10	464500	.	A	G	67160.3	.	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chr10	561234	.	A	G	654763	.	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chr10	565388	.	C	A	91779.2	.	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chr10	574773	.	T	C	15273.5	.	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chr10	638138	.	T	A	0	.	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chr10	638636	.	T	C	0	.	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chr10	638837	.	C	T	397564	.	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chr10	653138	.	C	T	718702	.	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chr10	658448	.	T	G	0	.	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chr10	661961	.	A	T	308396	.	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chr10	662320	.	T	C	675241	.	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chr10	663199	.	G	T	998255	.	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chr10	669306	.	C	T	897896	.	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chr10	669908	.	C	T	176200	.	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chr10	699403	.	A	G	925817	.	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chr10	716468	.	C	T	81221.8	.	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chr10	735409	.	G	C	101.532	.	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chr10	754119	.	G	A	300781	.	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chr10	759927	.	C	T	9540.27	.	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chr10	797801	.	G	A	31197	.	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chr10	883159	.	C	G	405264	.	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chr10	964859	.	A	G	115233	.	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chr10	992490	.	G	A	470428	.	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chr10	1041222	.	A	G	34078.1	.	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chr10	1063886	.	G	C	9650.14	.	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chr10	1065121	.	G	A	564.785	.	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chr10	1074462	.	G	A	435415	.	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chr10	1083764	.	T	C	0	.	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chr10	1128179	.	T	C	0	.	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chr10	1268080	.	C	T	352225	.	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chr10	1341720	.	A	G	45017	.	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chr10	1384706	.	T	G	279432	.	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chr10	1387021	.	C	T	358482	.	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chr10	1392773	.	A	G	486344	.	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chr10	1399269	.	C	T	170830	.	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chr10	1414588	.	C	A	120976	.	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chr10	1463519	.	A	G	246.649	.	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chr10	1498888	.	A	T	62869.5	.	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chr10	1513542	.	A	G	14123.2	.	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chr10	1519673	.	G	A	388156	.	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chr10	1554604	.	A	G	127823	.	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chr11	241962	.	A	T	1.17834e+06	.	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chr11	241970	.	A	G	1.06632e+06	.	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chr11	256962	.	A	T	3869.26	.	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chr11	265114	.	C	T	506869	.	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chr11	306911	.	T	C	141807	.	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chr11	324013	.	T	C	3.05808e-11	.	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chr11	324903	.	A	G	220149	.	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chr11	325228	.	T	C	0	.	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chr11	354078	.	G	A	759912	.	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chr11	391633	.	T	C	115942	.	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chr11	408965	.	G	T	378602	.	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chr11	418011	.	C	T	8372.9	.	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chr11	433376	.	A	G	115186	.	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chr11	458037	.	C	T	4121.46	.	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chr11	529804	.	C	T	58083.5	.	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chr11	552427	.	G	A	21102	.	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chr11	571361	.	A	G	2048.24	.	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chr11	604547	.	T	C	1.6355e-11	.	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chr11	637436	.	T	A	951164	.	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chr11	644562	.	G	A	275576	.	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chr11	659205	.	T	C	2.0274e-11	.	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chr11	683965	.	T	C	256402	.	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chr11	694933	.	A	G	557501	.	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chr11	703912	.	C	T	131662	.	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chr11	706213	.	A	T	11880.9	.	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chr11	740730	.	T	C	2.63223e-11	.	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chr11	767389	.	A	G	462987	.	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chr11	812065	.	T	C	1.03022e+06	.	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chr11	888290	.	A	G	23983.4	.	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chr11	897536	.	T	C	0	.	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chr11	902534	.	T	C	223731	.	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chr11	987190	.	C	A	221812	.	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chr11	987253	.	A	T	129813	.	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chr11	1005477	.	C	T	119671	.	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chr11	1006055	.	G	T	184406	.	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chr11	1006753	.	T	C	1.07822e+06	.	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chr11	1006784	.	T	C	2.06112e+06	.	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chr11	1006911	.	A	T	106982	.	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chr11	1009859	.	A	G	367251	.	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chr11	1018965	.	A	G	515370	.	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chr11	1019739	.	G	A	521.375	.	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chr11	1020630	.	G	A	885022	.	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chr11	1057437	.	T	C	3.12596e-11	.	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chr11	1058035	.	T	A	1.28371e-11	.	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chr11	1084422	.	G	A	13669.4	.	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chr11	1100269	.	G	A	645697	.	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chr11	1106452	.	T	C	98176.1	.	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chr11	1120257	.	T	C	0	.	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chr11	1141641	.	A	G	418762	.	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chr11	1157111	.	A	T	123487	.	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chr11	1181093	.	G	A	369755	.	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chr11	1196007	.	T	C	152297	.	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chr11	1263156	.	T	C	0	.	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chr11	1275605	.	C	T	308627	.	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chr11	1287484	.	A	G	32456.2	.	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chr11	1360267	.	C	T	85253	.	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chr11	1375053	.	C	T	13504.5	.	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chr11	1383842	.	A	C	986.961	.	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chr11	1467529	.	T	C	266445	.	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chr11	1563321	.	G	C	475093	.	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chr11	1637389	.	G	A	12500.2	.	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chr11	1640669	.	A	C	277576	.	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chr11	1659750	.	C	T	529315	.	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chr11	1679200	.	A	G	1307.43	.	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chr11	1696137	.	G	A	35718.4	.	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chr11	1749819	.	A	G	187964	.	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chr11	1752894	.	A	G	170996	.	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chr11	1815131	.	A	G	22835.7	.	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chr11	1831402	.	G	A	7897.22	.	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chr11	1887740	.	T	A	296364	.	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chr11	1900435	.	G	T	1.30195e+06	.	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chr11	1912576	.	G	A	29313.7	.	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chr11	1945955	.	G	A	348400	.	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chr11	1978660	.	C	T	284487	.	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chr11	2001759	.	A	G	1.06804e+06	.	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chr12	63028	.	C	A	278543	.	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chr12	63243	.	C	T	256429	.	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chr12	63268	.	C	T	190316	.	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chr12	63322	.	G	T	258574	.	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chr12	82667	.	A	T	1.08547e+06	.	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chr12	83177	.	T	C	668587	.	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chr12	83558	.	T	C	0	.	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chr12	114173	.	C	T	2.24484e+06	.	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chr12	123645	.	T	C	495657	.	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chr12	174880	.	T	C	0	.	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chr12	331294	.	T	C	0	.	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chr12	350796	.	G	A	1.86311e+06	.	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chr12	379979	.	T	C	499959	.	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chr12	394228	.	A	T	4888.89	.	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chr12	418961	.	C	A	268638	.	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chr12	532113	.	A	T	9532.25	.	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chr12	532131	.	G	T	520038	.	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chr12	532133	.	C	T	11275.6	.	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chr12	606896	.	C	T	2696.12	.	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chr12	640429	.	A	T	1115.63	.	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chr12	657927	.	G	A	19193.6	.	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chr12	684111	.	T	A	19884.8	.	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chr12	684117	.	T	G	506746	.	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chr12	696302	.	C	T	815.79	.	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chr12	698136	.	G	T	564016	.	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chr12	726602	.	A	G	1.48204e+06	.	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chr12	751029	.	A	G	11751	.	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chr12	753957	.	T	C	19816.3	.	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chr12	760468	.	T	A	646096	.	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chr12	760531	.	G	T	657233	.	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chr12	762388	.	A	T	58850	.	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chr12	763141	.	A	C	964194	.	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chr12	807679	.	C	T	3376.71	.	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chr12	812812	.	C	T	20675.1	.	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chr12	813217	.	C	T	127000	.	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chr12	817280	.	A	G	356673	.	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chr12	818766	.	G	A	637341	.	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chr12	839903	.	G	A	487624	.	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chr12	865159	.	T	A	4.99907e-12	.	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chr12	907264	.	A	G	1.26147e+06	.	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chr12	913124	.	A	T	668346	.	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chr12	920666	.	C	T	221.857	.	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chr12	938341	.	G	A	6288.81	.	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chr12	943339	.	C	T	656861	.	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chr12	953362	.	C	A	38631.1	.	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chr12	959248	.	G	T	6.60371e-11	.	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chr12	980434	.	A	T	709462	.	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chr12	989679	.	T	C	0	.	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chr12	1005696	.	G	C	1.96286e+06	.	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chr12	1014046	.	T	A	438237	.	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chr12	1014802	.	A	T	133357	.	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chr12	1015328	.	C	T	1.10003e+06	.	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chr12	1020211	.	C	T	9244.14	.	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chr12	1043449	.	C	T	4.41461e-08	.	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chr12	1051589	.	G	A	11170.9	.	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chr12	1068851	.	G	C	32417.8	.	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chr12	1075986	.	C	A	170781	.	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chr12	1078321	.	G	A	1.5576e+06	.	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chr12	1087957	.	C	T	4167.29	.	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chr12	1116285	.	T	A	5.20737e-12	.	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chr12	1156135	.	T	C	708640	.	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chr12	1195282	.	A	G	15661	.	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chr12	1197074	.	T	A	626380	.	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chr12	1212825	.	T	C	314702	.	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chr12	1320059	.	C	T	220789	.	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chr12	1322498	.	A	G	343.895	.	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chr12	1387200	.	C	T	1.00194e+06	.	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chr12	1392124	.	T	A	8.05406e-12	.	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chr12	1435153	.	T	C	602889	.	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chr12	1449503	.	C	T	695831	.	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chr12	1515725	.	G	A	30096.9	.	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chr12	1546481	.	C	T	493.377	.	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chr12	1559859	.	T	A	856842	.	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chr12	1615391	.	C	G	821747	.	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chr12	1663324	.	A	T	549827	.	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chr12	1663492	.	A	G	264147	.	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chr12	1665622	.	G	A	333073	.	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chr12	1673470	.	G	A	161840	.	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chr12	1678939	.	A	G	1.16993e+06	.	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chr12	1681129	.	G	A	28854.8	.	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chr12	1681360	.	A	G	629769	.	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chr12	1792353	.	A	C	116780	.	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chr12	1798551	.	T	A	229626	.	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chr12	1802019	.	T	A	1.38246e-11	.	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chr12	1811233	.	G	A	195671	.	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chr12	1868677	.	G	A	17853.1	.	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chr12	1887454	.	C	T	83800.9	.	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chr12	1927229	.	T	C	726173	.	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chr12	1963992	.	T	C	342014	.	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chr12	1964949	.	G	A	446645	.	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chr12	1996827	.	T	A	397856	.	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chr12	1997660	.	G	T	15018.7	.	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chr12	2006015	.	A	G	253046	.	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chr12	2023575	.	T	C	252731	.	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chr12	2035576	.	C	T	113895	.	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chr12	2046741	.	A	G	326382	.	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chr12	2047161	.	T	G	457707	.	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chr12	2050146	.	C	T	1433.68	.	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chr12	2079644	.	G	A	51932	.	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chr12	2098567	.	C	T	309714	.	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chr12	2116182	.	G	C	975078	.	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chr13	155246	.	G	A	342162	.	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chr13	156689	.	C	T	432051	.	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chr13	194874	.	C	T	107002	.	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chr13	236385	.	C	T	1163.99	.	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chr13	256854	.	T	C	294265	.	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chr13	301446	.	C	A	598595	.	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chr13	309120	.	T	A	2.84515e-11	.	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chr13	341070	.	C	T	125408	.	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chr13	365240	.	T	A	8559.97	.	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chr13	410962	.	A	G	19025	.	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chr13	480781	.	C	A	89196.7	.	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chr13	503298	.	A	T	88404.5	.	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chr13	530497	.	T	C	2.5304e-11	.	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chr13	531261	.	G	C	274150	.	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chr13	595379	.	A	G	17422.1	.	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chr13	613236	.	T	A	4.46831e-11	.	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chr13	640404	.	T	C	234483	.	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chr13	714722	.	T	C	449827	.	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chr13	738765	.	A	T	388491	.	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chr13	756912	.	A	G	518299	.	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chr13	758787	.	A	G	72650.2	.	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chr13	769044	.	A	T	41342.1	.	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chr13	817001	.	T	G	109012	.	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chr13	931547	.	A	C	7738.1	.	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chr13	935882	.	A	G	327621	.	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chr13	944480	.	G	C	9756.94	.	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chr13	1079779	.	T	C	654701	.	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chr13	1150583	.	G	A	17919.3	.	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chr13	1175513	.	G	A	973721	.	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chr13	1225494	.	C	T	223621	.	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chr13	1230403	.	A	G	780859	.	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chr13	1257063	.	A	G	1.4462e+06	.	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chr13	1265571	.	C	T	658905	.	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chr13	1311128	.	C	A	175749	.	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chr13	1350981	.	C	A	64363.6	.	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chr13	1362388	.	G	C	30628.3	.	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chr13	1406752	.	G	T	505312	.	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chr13	1429067	.	T	G	321639	.	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chr13	1478081	.	A	G	626588	.	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chr13	1482708	.	C	T	1.2549e+06	.	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chr13	1599633	.	A	G	242493	.	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chr13	1628232	.	T	C	85499	.	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chr13	1660920	.	A	T	343.354	.	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chr13	1682933	.	A	G	1.18722e+06	.	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chr13	1716321	.	G	A	621003	.	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chr13	1734408	.	T	C	2.64766e-11	.	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chr13	1774926	.	C	T	250943	.	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chr13	1861105	.	T	A	0	.	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chr13	1876423	.	A	T	2.09099e+06	.	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chr13	1876601	.	G	C	885788	.	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chr13	1876606	.	T	C	817912	.	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chr13	1879380	.	T	A	0	.	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chr13	1879381	.	T	A	2.60446e-11	.	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chr13	1879631	.	T	A	0	.	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chr13	1880114	.	T	A	411475	.	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chr13	1882346	.	G	T	0	.	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chr13	1910058	.	C	A	1.41927e+06	.	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chr13	1970443	.	A	G	240388	.	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chr13	1986165	.	A	G	79953.2	.	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chr13	2021487	.	T	A	943410	.	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chr13	2022295	.	A	T	40758.7	.	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chr13	2044533	.	G	C	30339.7	.	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chr13	2067739	.	T	C	6.00197e-12	.	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chr13	2078454	.	G	A	2316.83	.	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chr13	2083881	.	T	G	330147	.	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chr13	2103416	.	C	T	339491	.	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chr13	2110966	.	T	C	1.69262e+06	.	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chr13	2124676	.	T	C	2.69485e+06	.	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chr13	2124825	.	T	A	4.42763e+06	.	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chr13	2266108	.	C	T	141866	.	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chr13	2302511	.	T	C	332381	.	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chr13	2309427	.	A	T	346771	.	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chr13	2341610	.	A	G	195986	.	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chr13	2400533	.	T	C	1.11454e+06	.	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chr13	2415386	.	C	A	107721	.	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chr13	2415839	.	T	C	195992	.	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chr13	2417474	.	A	G	8203.56	.	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chr13	2417849	.	C	T	189656	.	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chr13	2475404	.	A	G	66726.2	.	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chr13	2478581	.	C	T	304095	.	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chr13	2479113	.	C	G	1.35859e+06	.	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chr13	2479509	.	G	A	1.02299e+06	.	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chr13	2481108	.	C	G	3.01647e+06	.	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chr13	2481275	.	C	G	4.00476e+06	.	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chr13	2529293	.	T	C	594870	.	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chr13	2600907	.	A	T	62484.7	.	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chr13	2606427	.	A	G	349239	.	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chr13	2640170	.	T	A	26417	.	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chr13	2651476	.	T	G	2.69086e-11	.	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chr13	2651632	.	C	T	4426.47	.	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chr13	2655493	.	G	A	89612.6	.	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chr13	2669640	.	T	A	0	.	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chr13	2675894	.	C	A	11016.6	.	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chr13	2761811	.	A	C	265662	.	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chr14	47596	.	C	G	959716	.	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chr14	107014	.	G	A	831980	.	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chr14	113975	.	T	C	2659.87	.	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chr14	113980	.	G	A	11361.9	.	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chr14	137622	.	T	C	164427	.	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chr14	137691	.	G	A	148619	.	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chr14	161286	.	G	T	373940	.	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chr14	164833	.	C	T	410230	.	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chr14	165436	.	A	G	163.207	.	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chr14	201791	.	C	A	577986	.	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chr14	259286	.	C	T	735581	.	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chr14	324097	.	A	G	7181.15	.	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chr14	337415	.	T	C	842130	.	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chr14	384345	.	C	T	104545	.	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chr14	393389	.	A	G	6795.2	.	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chr14	397871	.	A	G	3284.41	.	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chr14	406995	.	T	G	534006	.	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chr14	407424	.	C	T	65896	.	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chr14	422158	.	A	T	8943.06	.	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chr14	429723	.	T	A	274041	.	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chr14	465265	.	G	A	1.05237e+06	.	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chr14	489229	.	A	G	885.403	.	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chr14	494376	.	T	A	69330.2	.	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chr14	512987	.	G	A	109049	.	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chr14	564339	.	C	T	724137	.	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chr14	564690	.	G	A	34416.2	.	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chr14	689116	.	A	G	260111	.	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chr14	872802	.	A	C	3.51208e+06	.	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chr14	901969	.	G	A	766114	.	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chr14	910628	.	G	A	8000.6	.	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chr14	914115	.	T	C	0	.	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chr14	919511	.	T	G	419248	.	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chr14	923791	.	T	C	1.09882e+06	.	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chr14	1034851	.	C	T	1.00012e+06	.	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chr14	1036865	.	A	G	137.418	.	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chr14	1102389	.	G	A	370205	.	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chr14	1105725	.	A	G	1.10596e+06	.	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chr14	1106139	.	C	T	114429	.	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chr14	1137767	.	C	T	5025.29	.	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chr14	1166314	.	C	A	810567	.	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chr14	1171335	.	A	G	662489	.	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chr14	1171479	.	G	A	2.07706e+06	.	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chr14	1179640	.	T	C	3.31112e+06	.	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chr14	1193881	.	C	T	1.56148e+06	.	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chr14	1199242	.	A	T	172706	.	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chr14	1227031	.	C	A	1.27349e+06	.	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chr14	1334365	.	T	A	68709.1	.	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chr14	1336795	.	T	C	0	.	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chr14	1397764	.	C	T	60513.3	.	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chr14	1454960	.	C	T	764325	.	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chr14	1467935	.	T	C	44906.2	.	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chr14	1473534	.	A	T	874869	.	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chr14	1576037	.	T	C	3.271e-11	.	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chr14	1636229	.	C	T	0.00165649	.	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chr14	1656678	.	G	T	20006.4	.	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chr14	1657395	.	C	T	190793	.	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chr14	1661154	.	C	T	62584.6	.	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chr14	1665655	.	G	T	753113	.	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chr14	1671322	.	C	A	603043	.	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chr14	1671537	.	G	A	1.14086e+06	.	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chr14	1672649	.	G	A	154880	.	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chr14	1694073	.	C	G	282032	.	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chr14	1745506	.	A	T	2338.64	.	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chr14	1775107	.	T	A	0	.	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chr14	1817108	.	G	A	265364	.	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chr14	1853594	.	A	G	93836.1	.	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chr14	1956202	.	T	C	245007	.	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chr14	1956408	.	A	T	298060	.	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chr14	2000031	.	C	A	6436.19	.	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chr14	2000415	.	C	T	10733.5	.	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chr14	2070946	.	C	T	241350	.	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chr14	2098642	.	A	G	6535.3	.	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chr14	2124198	.	C	T	725309	.	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chr14	2128849	.	A	C	231212	.	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chr14	2144375	.	G	A	344.101	.	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chr14	2160136	.	G	A	6562.08	.	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chr14	2160961	.	T	C	562891	.	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chr14	2169240	.	A	C	2912.4	.	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chr14	2196699	.	T	G	1.12729e+06	.	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chr14	2287572	.	A	G	15807.1	.	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chr14	2342241	.	G	A	559554	.	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chr14	2351869	.	C	T	23144.7	.	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chr14	2442547	.	G	A	118469	.	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chr14	2521956	.	T	A	326585	.	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chr14	2540639	.	G	A	374830	.	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chr14	2619811	.	C	T	932635	.	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chr14	2630597	.	T	C	656172	.	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chr14	2639935	.	A	C	36019.6	.	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chr14	2674607	.	C	T	848758	.	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chr14	2695875	.	T	C	5.02993e-12	.	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chr14	2695923	.	G	A	186656	.	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chr14	2733656	.	C	T	117234	.	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chr14	2755887	.	T	A	111807	.	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chr14	2762933	.	T	A	860716	.	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chr14	3043530	.	A	C	227228	.	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chr14	3193605	.	C	T	757851	.	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