ATAC-seq Sample Total Reads Clonality total_peaks ip_eff peaks_filt_input peaks_filt_local peaks_filt_clonal atac_AJ_Kupffer_Control_rep1 12382501 1.001 48593 20.81 0 13555 30 atac_AJ_Kupffer_Control_rep2 19878505 1.085 51266 19.33 0 15610 45 atac_AJ_Kupffer_Control_rep3 8764908 1.141 46516 22.27 0 9922 28 atac_AJ_Kupffer_Control_rep4 12431635 1.209 49621 21.5 0 10530 40 atac_BALBcJ_Kupffer_Control_rep1 12221846 1.025 52567 24.05 0 13746 12 atac_BALBcJ_Kupffer_Control_rep2 15945259 1.271 55095 26.91 0 14649 21 atac_BALBcJ_Kupffer_Control_rep3 15052492 1.166 50140 20.17 0 10901 23 atac_BALBcJ_Kupffer_Control_rep4 178332619 10.758 158205 27.29 0 88465 45 atac_C57_Kupffer_Control_rep1 25420960 1.154 59194 27.66 0 19906 67 atac_C57_Kupffer_Control_rep2 9958064 0.827 45500 25.72 0 11794 8 atac_C57_Kupffer_Control_rep3 9950593 0.768 53013 32.39 0 12570 6 atac_C57_Kupffer_Control_rep4 15960847 0.883 45324 17.15 0 12638 14 atac_C57_Kupffer_LPS_2hr_rep1 18316132 1.711 76222 28.88 0 19277 6 atac_C57_Kupffer_LPS_2hr_rep2 16774510 2.436 60575 33.4 0 9731 5 atac_C57_Kupffer_LPS_2hr_rep3 17508317 3.429 49517 14.54 0 10011 30 atac_BALBcJ_Kupffer_LPS_2hr_rep1 16172767 2.557 64549 28.47 0 14849 9 atac_BALBcJ_Kupffer_LPS_2hr_rep2 13612534 4.148 61313 29.06 0 12038 12 atac_cb6f1j_kupffer_Control_rep1_balbcj 86267511 1.89 133910 19.16 0 126451 1729 atac_cb6f1j_kupffer_Control_rep1_c57bl6j 86217718 1.889 133909 19.17 0 126586 1702 atac_cb6f1j_kupffer_Control_rep2_balbcj 56220542 2.535 110248 19.3 0 72238 330 atac_cb6f1j_kupffer_Control_rep2_c57bl6j 56204389 2.534 110266 19.31 0 72412 324 atac_cb6f1j_kupffer_Control_rep3_balbcj 62942903 2.838 202613 24.12 0 94293 1478 atac_cb6f1j_kupffer_Control_rep3_c57bl6j 62917870 2.836 202865 24.15 0 94505 1481 atac_cb6f1j_kupffer_Control_rep4_balbcj 69057309 2.68 171026 21.95 0 123963 1037 atac_cb6f1j_kupffer_Control_rep4_c57bl6j 69021672 2.679 171208 21.98 0 124233 1044 atac_cb6f1j_Kupffer_LPS_2hr_rep1_balbcj 55906873 1.845 113987 44.22 0 56562 30 atac_cb6f1j_Kupffer_LPS_2hr_rep1_c57bl6j 55892412 1.844 113865 44.22 0 56523 32 atac_cb6f1j_Kupffer_LPS_2hr_rep2_balbcj 48079225 1.435 104550 43.38 0 49603 56 atac_cb6f1j_Kupffer_LPS_2hr_rep2_c57bl6j 48072753 1.434 104566 43.38 0 49602 59 atac_cb6f1j_Kupffer_LPS_2hr_rep3_balbcj 58454966 1.771 133178 26.82 0 84835 193 atac_cb6f1j_Kupffer_LPS_2hr_rep3_c57bl6j 58444806 1.771 133351 26.84 0 84686 189 atac_cb6f1j_Kupffer_LPS_2hr_rep4_balbcj 60831168 2.053 126586 40.42 0 73975 46 atac_cb6f1j_Kupffer_LPS_2hr_rep4_c57bl6j 60813466 2.052 126547 40.43 0 73868 53 atac_cb6f1j_Kupffer_LPS_2hr_rep5_balbcj 49686627 3.898 142820 37.11 0 61463 26 atac_cb6f1j_Kupffer_LPS_2hr_rep5_c57bl6j 49667819 3.897 142837 37.12 0 61652 28 H3K27Ac ChIP-seq Sample Total Reads Clonality total_peaks ip_eff peaks_filt_input peaks_filt_local peaks_filt_clonal h3k27ac_AJ_Kupffer_Control_rep1 17480877 1.404 30086 43.78 479 0 1 h3k27ac_AJ_Kupffer_Control_rep2 5405677 0.187 24794 30.56 144 0 3 h3k27ac_AJ_Kupffer_Control_rep3 21702134 1.253 28118 43.29 266 0 2 h3k27ac_BALBcJ_Kupffer_Control_rep1 14821017 1.261 28920 43.6 482 0 1 h3k27ac_BALBcJ_Kupffer_Control_rep2 6220543 0.124 27605 36.43 337 0 6 h3k27ac_BALBcJ_Kupffer_Control_rep3 21435839 1.344 29812 37.33 531 0 1 h3k27ac_C57_Kupffer_Control_rep1 9468035 1.076 29216 45.07 0 0 73 h3k27ac_C57_Kupffer_Control_rep2 8006048 0.186 29377 26.3 188 0 3 h3k27ac_C57_Kupffer_Control_rep3 22615879 1.538 27120 44.36 37 0 2 h3k27ac_cb6f1j_kupffer_Control_rep1_balbcj 31668000.5 1.468 16564 26.77 976 0 18 h3k27ac_cb6f1j_kupffer_Control_rep1_c57bl6j 31757772 1.467 16551 26.75 984 0 17 h3k27ac_cb6f1j_kupffer_Control_rep2_balbcj 43903689 1.591 19994 47.25 1002 0 3 h3k27ac_cb6f1j_kupffer_Control_rep2_c57bl6j 44050157 1.59 19943 47.26 1003 0 4 h3k27ac_cb6f1j_kupffer_Control_rep3_balbcj 34643413 0.81 19612 44.74 956 0 7 h3k27ac_cb6f1j_kupffer_Control_rep3_c57bl6j 34758156 0.81 19670 44.76 994 0 5