Biophysical Property,Description
Phob1,Hydrophobicity Scale
Charge,Charge [ec]
Phob2,Octanol-Interface Hydrophobicity Scale
Bulk,Side-Chain Bulkiness
Flex,Side-Chain Flexibility
KD1,Helix/Bend Preference
KD2,Side-Chain Size
KD3,Extended Structure
KD4,Hydrophobicity Preference
KD5,Double-bend Preference
KD6,Flat Extended Preference
KD7,Partial Specific Volume
KD8,Occurrence in alpha-region
KD9,pK-C
KD10,Surrounding Hydrophobicity
HS1,Normalized Positional Residue
HS2,Normalized Positional Residue Freq at Helix C-term
HS3,Spin-Spin Coupling Constants Freq at Helix C4-term
HS4,Random Parameter
HS5,pK-N
HS6,Alpha-Helix Indices for Beta-Proteins
HS7,Linker Propensity from 2-Linker Dataset
HS8,Linker Propensity from Long Dataset
HS9,Normalized Relative Freq of Helix End
HS10,Normalized Relative Freq Double Bend
HS11,pK-COOH
HS12,Relative Mutability
HS13,Kerr-Constant Increments
HS14,Net Charge
HS15,Norm Freq Zeta-R
HS16,Hydropathy Scale
HS17,Ratio of Average Computed Composition
HS18,Intercept in Regression Analysis
HS19,Correlation Coefficient in Regression Analysis
HS20,Weights for Alpha-Helix at window pos 3
HS21,Weights for Beta-sheet at window pos -3
HS22,Weights for Beta-sheet at window pos 3
HS23,Weights for coil at win pos -5
HS24,Weights for coil at win pos -4
HS25,Weights for coil at win pos 6
HS26,Avg Rel Frac occur in AL
HS27,Avg Rel Frac occur in EL
HS28,Avg Rel Frac occur in A0
HS29,Rel Pref at N
HS30,Rel Pref at N1
HS31,Rel Pref at N2
HS32,Rel Pref at C1
HS33,Rel Pref at C
HS34,Information measure for extended without H-bond
HS35,Information measure for C-term turn
HS36,Loss of SC hydropathy by helix formation
HS37,Principal Component 4 (Sneath 1966)
HS38,Zimm-Bragg Parameter
HS39,Normalized Freq of ZetaR
HS40,Rel Pop Conformational State A
HS41,Rel Pop Conformational State C
HS42,Electron-Ion Interaction Potential
HS43,Free energy change of epsI to epsEX
HS44,Free energy change of alphaRI to alphaRH
HS45,Hydrophobicity coeff
HS46,Principal Property Value z3 Wold et al. 1987