Table S2: SNPs idenitified in PA14-PIPR using medaka. ,,,,,,,,,
CHROMOSOME,POSITION,ID,REF,ALT,QUAL,FILTER,INFO,FORMAT,SAMPLE
contig_1_segment0,44254,.,AG,A,8.081,PASS,"DP=251;DPS=124,127",GT:GQ,1:08
contig_1_segment0,52988,.,CT,C,14.154,PASS,"DP=249;DPS=120,129",GT:GQ,1:14
contig_1_segment0,135197,.,GC,G,14.372,PASS,"DP=254;DPS=130,124",GT:GQ,1:14
contig_1_segment0,291827,.,TC,T,5.464,PASS,"DP=239;DPS=124,115",GT:GQ,1:05
contig_1_segment0,324178,.,G,GA,3.471,PASS,"DP=238;DPS=130,108",GT:GQ,1:03
contig_1_segment0,554973,.,GA,G,21.456,PASS,"DP=268;DPS=140,128",GT:GQ,1:21
contig_1_segment0,565949,.,AG,A,12.862,PASS,"DP=294;DPS=156,138",GT:GQ,1:13
contig_1_segment0,684749,.,AC,A,5.152,PASS,"DP=302;DPS=150,152",GT:GQ,1:05
contig_1_segment0,944391,.,CT,C,12.001,PASS,"DP=286;DPS=122,164",GT:GQ,1:12
contig_1_segment0,1037924,.,CA,C,2.033,PASS,"DP=245;DPS=120,125",GT:GQ,1:02
contig_1_segment0,1087297,.,CG,C,3.841,PASS,"DP=278;DPS=132,146",GT:GQ,1:04
contig_1_segment0,1103396,.,CT,C,6.319,PASS,"DP=289;DPS=156,133",GT:GQ,1:06
contig_1_segment0,1171701,.,AG,A,6.139,PASS,"DP=266;DPS=147,119",GT:GQ,1:06
contig_1_segment0,1219216,.,G,A,2.888,PASS,"DP=248;DPS=110,138",GT:GQ,1:03
contig_1_segment0,1282280,.,T,TC,8.501,PASS,"DP=277;DPS=129,148",GT:GQ,1:09
contig_1_segment0,1347877,.,GC,G,0.92,PASS,"DP=285;DPS=146,139",GT:GQ,1:01
contig_1_segment0,1631641,.,CT,C,10.699,PASS,"DP=211;DPS=99,112",GT:GQ,1:11
contig_1_segment0,1676624,.,CT,C,1.761,PASS,"DP=277;DPS=127,150",GT:GQ,1:02
contig_1_segment0,1709037,.,TC,T,4.919,PASS,"DP=244;DPS=116,128",GT:GQ,1:05
contig_1_segment0,1715296,.,TG,T,6.185,PASS,"DP=259;DPS=124,135",GT:GQ,1:06
contig_1_segment0,1720492,.,GT,G,6.726,PASS,"DP=248;DPS=120,128",GT:GQ,1:07
contig_1_segment0,1793419,.,AG,A,1.072,PASS,"DP=259;DPS=118,141",GT:GQ,1:01
contig_1_segment0,1857815,.,TG,T,18.822,PASS,"DP=240;DPS=112,128",GT:GQ,1:19
contig_1_segment0,1877421,.,AG,A,1.429,PASS,"DP=286;DPS=149,137",GT:GQ,1:01
contig_1_segment0,1883569,.,G,GA,9.065,PASS,"DP=274;DPS=136,138",GT:GQ,1:09
contig_1_segment0,2005838,.,AG,A,3.048,PASS,"DP=282;DPS=130,152",GT:GQ,1:03
contig_1_segment0,2042283,.,G,A,41.477,PASS,"DP=240;DPS=113,127",GT:GQ,1:41
contig_1_segment0,2142269,.,G,GA,11.435,PASS,"DP=207;DPS=94,113",GT:GQ,1:11
contig_1_segment0,2317527,.,CG,C,5.215,PASS,"DP=209;DPS=98,111",GT:GQ,1:05
contig_1_segment0,2489329,.,TG,T,3.143,PASS,"DP=242;DPS=129,113",GT:GQ,1:03
contig_1_segment0,2503396,.,GA,G,3.945,PASS,"DP=248;DPS=134,114",GT:GQ,1:04
contig_1_segment0,2681866,.,C,CT,1.579,PASS,"DP=226;DPS=113,113",GT:GQ,1:02
contig_1_segment0,2701266,.,TC,T,6.54,PASS,"DP=226;DPS=118,108",GT:GQ,1:07
contig_1_segment0,2718671,.,CT,C,19.326,PASS,"DP=189;DPS=90,99",GT:GQ,1:19
contig_1_segment0,2718680,.,CG,C,0.349,PASS,"DP=189;DPS=90,99",GT:GQ,1:00
contig_1_segment0,2744086,.,CG,C,18.876,PASS,"DP=216;DPS=119,97",GT:GQ,1:19
contig_1_segment0,2746248,.,T,TA,0.426,PASS,"DP=223;DPS=124,99",GT:GQ,1:00
contig_1_segment0,2776718,.,AG,A,10.915,PASS,"DP=205;DPS=102,103",GT:GQ,1:11
contig_1_segment0,2913722,.,A,AC,4.275,PASS,"DP=206;DPS=100,106",GT:GQ,1:04
contig_1_segment0,2924320,.,TC,T,10.644,PASS,"DP=222;DPS=108,114",GT:GQ,1:11
contig_1_segment0,3074932,.,CT,C,21.521,PASS,"DP=186;DPS=102,84",GT:GQ,1:22
contig_1_segment0,3204189,.,C,CT,1.575,PASS,"DP=181;DPS=81,100",GT:GQ,1:02
contig_1_segment0,3328444,.,G,A,8.715,PASS,"DP=181;DPS=102,79",GT:GQ,1:09
contig_1_segment0,3395497,.,T,TC,16.271,PASS,"DP=178;DPS=95,83",GT:GQ,1:16
contig_1_segment0,3402093,.,G,GA,3.87,PASS,"DP=180;DPS=87,93",GT:GQ,1:04
contig_1_segment0,3476124,.,GC,G,10.4,PASS,"DP=186;DPS=96,90",GT:GQ,1:10
contig_1_segment0,3482171,.,CT,C,18.475,PASS,"DP=187;DPS=97,90",GT:GQ,1:18
contig_1_segment0,3488922,.,TA,T,7.368,PASS,"DP=211;DPS=118,93",GT:GQ,1:07
contig_1_segment0,3511091,.,CG,C,3.633,PASS,"DP=192;DPS=93,99",GT:GQ,1:04
contig_1_segment0,3630955,.,CA,C,1.111,PASS,"DP=185;DPS=96,89",GT:GQ,1:01
contig_1_segment0,3675264,.,CT,C,7.453,PASS,"DP=180;DPS=88,92",GT:GQ,1:07
contig_1_segment0,3769228,.,G,A,8.701,PASS,"DP=155;DPS=79,76",GT:GQ,1:09
contig_1_segment0,3786415,.,GT,G,0.442,PASS,"DP=180;DPS=91,89",GT:GQ,1:00
contig_1_segment0,3814029,.,CT,C,12.402,PASS,"DP=181;DPS=86,95",GT:GQ,1:12
contig_1_segment0,3815353,.,G,A,6.059,PASS,"DP=188;DPS=90,98",GT:GQ,1:06
contig_1_segment0,3894359,.,AG,A,2.904,PASS,"DP=156;DPS=76,80",GT:GQ,1:03
contig_1_segment0,3964334,.,T,TC,13.299,PASS,"DP=185;DPS=82,103",GT:GQ,1:13
contig_1_segment0,3971405,.,A,G,14.176,PASS,"DP=193;DPS=92,101",GT:GQ,1:14
contig_1_segment0,4029310,.,GA,G,6.946,PASS,"DP=163;DPS=93,70",GT:GQ,1:07
contig_1_segment0,4102928,.,AC,A,7.02,PASS,"DP=168;DPS=89,79",GT:GQ,1:07
contig_1_segment0,4226072,.,T,C,0.633,PASS,"DP=161;DPS=78,83",GT:GQ,1:01
contig_1_segment0,4231080,.,GC,G,24.635,PASS,"DP=164;DPS=80,84",GT:GQ,1:25
contig_1_segment0,4290431,.,GC,G,3.913,PASS,"DP=172;DPS=84,88",GT:GQ,1:04
contig_1_segment0,4425751,.,GC,G,8.29,PASS,"DP=196;DPS=100,96",GT:GQ,1:08
contig_1_segment0,4489507,.,T,C,25.593,PASS,"DP=210;DPS=108,102",GT:GQ,1:26
contig_1_segment0,4561757,.,G,GC,7.566,PASS,"DP=208;DPS=112,96",GT:GQ,1:08
contig_1_segment0,4562462,.,C,CT,11.685,PASS,"DP=203;DPS=108,95",GT:GQ,1:12
contig_1_segment0,4643206,.,GC,G,14.202,PASS,"DP=201;DPS=108,93",GT:GQ,1:14
contig_1_segment0,4658911,.,CG,C,2.779,PASS,"DP=204;DPS=94,110",GT:GQ,1:03
contig_1_segment0,4660096,.,CA,C,1.882,PASS,"DP=207;DPS=98,109",GT:GQ,1:02
contig_1_segment0,4674176,.,CT,C,5.539,PASS,"DP=208;DPS=101,107",GT:GQ,1:06
contig_1_segment0,4718801,.,AG,A,9.006,PASS,"DP=187;DPS=94,93",GT:GQ,1:09
contig_1_segment0,4744035,.,TC,T,2.75,PASS,"DP=191;DPS=111,80",GT:GQ,1:03
contig_1_segment0,4817953,.,T,C,6.05,PASS,"DP=226;DPS=114,112",GT:GQ,1:06
contig_1_segment0,4823516,.,GA,G,3.704,PASS,"DP=208;DPS=111,97",GT:GQ,1:04
contig_1_segment0,4833607,.,AT,A,20.424,PASS,"DP=200;DPS=99,101",GT:GQ,1:20
contig_1_segment0,4983472,.,TC,T,1.14,PASS,"DP=181;DPS=111,70",GT:GQ,1:01
contig_1_segment0,5009646,.,CG,C,14.228,PASS,"DP=160;DPS=88,72",GT:GQ,1:14
contig_1_segment0,5029260,.,GT,G,13.698,PASS,"DP=199;DPS=104,95",GT:GQ,1:14
contig_1_segment0,5051180,.,GA,G,15.303,PASS,"DP=203;DPS=94,109",GT:GQ,1:15
contig_1_segment0,5122092,.,GA,G,16.292,PASS,"DP=203;DPS=106,97",GT:GQ,1:16
contig_1_segment0,5239444,.,AC,A,7.909,PASS,"DP=264;DPS=125,139",GT:GQ,1:08
contig_1_segment0,5465437,.,C,CTA,17.508,PASS,"DP=219;DPS=112,107",GT:GQ,1:18
contig_1_segment0,5627873,.,GA,G,7.919,PASS,"DP=190;DPS=89,101",GT:GQ,1:08
contig_1_segment0,5633359,.,GA,G,5.319,PASS,"DP=213;DPS=99,114",GT:GQ,1:05
contig_1_segment0,5644241,.,AG,A,7.964,PASS,"DP=204;DPS=107,97",GT:GQ,1:08
contig_1_segment0,5665510,.,CT,C,7.778,PASS,"DP=217;DPS=106,111",GT:GQ,1:08
contig_1_segment0,6144409,.,GT,G,6.559,PASS,"DP=245;DPS=121,124",GT:GQ,1:07
contig_1_segment0,6166363,.,A,AG,14.228,PASS,"DP=280;DPS=141,139",GT:GQ,1:14
contig_1_segment0,6193460,.,TC,T,4.887,PASS,"DP=249;DPS=136,113",GT:GQ,1:05
contig_1_segment0,6233941,.,GT,G,12.836,PASS,"DP=238;DPS=119,119",GT:GQ,1:13
contig_1_segment0,6271265,.,GC,G,1.222,PASS,"DP=244;DPS=135,109",GT:GQ,1:01
contig_1_segment0,6404687,.,GC,G,11.941,PASS,"DP=263;DPS=131,132",GT:GQ,1:12
contig_1_segment0,6431933,.,CT,C,22.832,PASS,"DP=258;DPS=124,134",GT:GQ,1:23
contig_1_segment0,6438302,.,CG,C,12.554,PASS,"DP=251;DPS=117,134",GT:GQ,1:13