Array 1 1553-986 **** Predicted by CRISPRDetect 2.3 *** >DXJU01000156.1-MAG TPA_asm: Candidatus Baldrarchaeota archaeon isolate MAG_128 k141_1394281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 1553 35 100.0 37 ................................... TATCTCTAGCGACGTCGATCTGCTTCTTTTCCGGAGT 1481 35 100.0 46 ................................... GAGGGAGATCCTTAACCAGCTTCTTATCAACTATAATCACAGCAAA 1400 35 100.0 38 ................................... CATTTCGAAGGGTGATGAGATTCCCTGGAATATTGTTG 1327 35 97.1 39 ................G.................. AGTACTACGGTTGTACCTACAAGTTCTTCTGTATCTTCC 1253 35 100.0 45 ................................... TGAAGCTCTGCCTCCCCTTAAAACAAGAGAATTTCCAGTCTCCAG 1173 34 97.1 42 .....-............................. CTACATGTAAACGCTGATCAACGAAAAAGTCAACAATAGTTA 1097 35 97.1 41 .................................G. ATTCTTTGAACAACGTAGTTGATGATGTTTGAAATTTTATC 1021 35 97.1 0 ..........G........................ | ========== ====== ====== ====== =================================== ============================================== ================== 8 35 98.6 41 CTTTCAAAAAATCTTAATTAAAAAAGAACAGCAAG # Left flank : TTTACCGTTCAAAAATATCAACAGACATACAACCATTAACAGTAATGACGACCATTTATATTTCATTTCTCTCCAAATATCAAGTTTTTATCGGAAAATCAAGGCTCTAAGGCAACATTTACATAGGTTTCTGTAAGTATAACCCTCACCAAAAAAGAGAAATAGATGAAAAAGAAAAGGAGAAACAAAAACACAAAACC # Right flank : TTAACAGTGGCCGATTTTCCCCCATCTGACCATATATAGTCTTTACCTCTCCCTTAGTTATAGCTGTGGTAGCTTATTTTGCATCTAAACGTAAAATAGTTAAACAAGCTCTAACAGGTCTATACATGATAGAGGAAAACTGTTATGTTTATAATATGGATTATAATAATACCTTTCTTTATTACAGCAAATATAGTGTT # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.39, 7:0.32, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAAAAATCTTAATTAAAAAAGAACAGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 20579-20769 **** Predicted by CRISPRDetect 2.3 *** >DXJV01000004.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate MAG_147 k141_1547127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 20579 37 100.0 40 ..................................... CCTCACTGTATTCTAATTCGTCACACAGTCTGTAGAGTTT 20656 37 100.0 39 ..................................... TGCCAAATATTAGCAAATTACCCCCATCCGCCAGTTCTG 20732 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 40 GTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Left flank : AAGGAGGTCTGCACAAAATGAAGAGAAAAAAACGAAAAAGAAGGCAGGAGAAGGCGTATTTTTGACAACTTTCAAGGCTTTTTTTGCAGGTCTTTATAAAGGATCGTACAAACTTTCGGTCTGCTTTGCTCATCAAGCAAAAAATTTAACTAGGAAAATTACATAAAATATTTAGCGCTTTAGAACGTTCTAAAGGCGCA # Right flank : AA # Questionable array : NO Score: 6.92 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.52, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 19-365 **** Predicted by CRISPRDetect 2.3 *** >DXJV01000042.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate MAG_147 k141_437668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 19 38 100.0 37 ...................................... GTGATAGAGGAAAATACAACACCGCCAGCTTCTAAGA 94 38 100.0 40 ...................................... TAGATAAGTCCTTTGCTTGTAGTCGTTGTGGTTATCATTT 172 38 100.0 40 ...................................... GCCGAGAGGAATGAGTGTTCTCGTAAAAACGAGTCCTAAA 250 38 92.1 37 G......................T.C............ TGTGAGAGGGTGAATGTTAAGTAAGTATCAAACTCAA 325 38 78.9 0 G..A............A......G..T.A......GT. | T,C [346,355] ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 94.2 39 TGTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Left flank : CCATTTCATCTCATCATTT # Right flank : AGTGAATATCTTTAGTTCCTAGTTTTTTTTGGGTAGCCAATTGTTATGAGATAGATTGGTCTCTGGTTTTCCGGCAGGTGGAGTGCTTCATAGACTGTTCCTAATTGAAAGCTGGTGATCGTGCAAGTTCCTAGTTTGAGTGCTGTTGCTTGTAAGAGAAGGTTTTGTGTGGCGTGTCCTGCTTCAAGACGAATGAATCT # Questionable array : NO Score: 6.47 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.29, 7:0.67, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 8844-9212 **** Predicted by CRISPRDetect 2.3 *** >DXJV01000042.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate MAG_147 k141_437668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 8844 30 100.0 35 .............................. GCATAATCTGTCATAGTTCCACCTCGGGATTACTT 8909 30 100.0 35 .............................. ATAAAATGGATAATTTCATTCCTGAAATGTTGATA 8974 30 100.0 40 .............................. ACAAATATCAGCGATAATATGACAGGCTACAGTTTTTCCG 9044 30 100.0 40 .............................. CAATCAGCTTACCATCTTTAATTGCTTTAATGAAATCATA 9114 30 96.7 39 ................A............. AGCTCTCGCATGCGTCTAATCTCTCGAGATAAATGCGGG 9183 29 83.3 0 ................AA......A..T.- | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 96.7 38 GTTAGAAGAGTACTAAGGTAGTGTTGAAAT # Left flank : CAGTTAAAGAAAGAGAAGACGAAGAGGTTAAGGAGAAAAAAAACAGCAAAAATTTGCTTTCTCCGGAAGAAAATAAATACTTTTTAAAAAAATCTGTCGATCTTTATAAAGAAAAGGGGTTACTGCACATCGACAGAATGACCAAACAAAAAGAAGGAAGGAAAAGGCTTAAAATACCAAAATATACCGTTACGTAACGG # Right flank : | # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.99, 7:0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAGAGTACTAAGGTAGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 145664-145318 **** Predicted by CRISPRDetect 2.3 *** >DXJV01000068.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate MAG_147 k141_939972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 145664 37 97.3 39 ..........................C.......... TTCGAGTCTTTTACTCGAAGGGTAACTATGAAAGAGTTT 145588 37 100.0 40 ..................................... ATATCAAAGAATCGCGCATAAGGAATGTCTTCTTGATAAT 145511 37 100.0 41 ..................................... TTCTCCTGCTTTGGATCTCCCCTTGCGTGAGAATGTATTTT 145433 37 100.0 41 ..................................... TCGCTCCATAAAAACTGTCGTTTGTAGGAACCCATCTTAGA 145355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 99.5 40 GTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Left flank : TTATG # Right flank : AATGCATATGTTGCCATTCTCAAAGAAGCAGCACTAATATATAAAGGAAAGAATAACCAAAATCAATGAATGGATAAACAACCTATTCGAGGGGATTAGAAAGAGTTGTGCAGTATCATTACCCACTCAAAAAGAATTAAGTAATCATTACAAGAAATACTGATGATTCTTATGAGATAAGAGTAGTTGATGCTAAAGCA # Questionable array : NO Score: 7.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.27, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGAAAAAGCTCAATCATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 254-65 **** Predicted by CRISPRDetect 2.3 *** >DXJG01000004.1-MAG TPA_asm: Candidatus Baldrarchaeota archaeon isolate MAG_95 contig_3338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 254 36 97.2 42 C................................... ATTAAATCTACAAGAAATAGGAACATACTTCCCAGATGAACT 176 36 100.0 39 .................................... GCACAATCATCGGAGGTTCCTCAACAATCATCCAACCCC 101 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 99.1 41 ACTTGCAGAGAAATCCTCATAAAAGAGGATTGAAAG # Left flank : GCAAAGAAACATCATGACCAAGTAGCTTCGAAAAAATAAGATAAAATTTTGAGATACATCTATGTAAAGACAAAAACTAACAAAAACACTACTTGGTACAATTTTATTAGGATACAAGTCTTAGCAAAATGTTCCAACACACAATACATAAAAATCTAAACAATAAATAATATAAAGTAAAAAGATAAATCTCTATGACG # Right flank : GAATGAAGATGAAATCTTAGAATCAATAAAAAAACTTAGCGAAAACTTGCAGAGAAATCCTCATA # Questionable array : NO Score: 6.45 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.41, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTGCAGAGAAATCCTCATAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 20511-20136 **** Predicted by CRISPRDetect 2.3 *** >DXJF01000071.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate CR1378_bin_8 k127_134174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 20511 28 100.0 37 ............................ ATATGGATAAGGCAGAACGTTTAAAACAAATATTATG 20446 28 100.0 37 ............................ CTTTTAAGACAGCATTACATTTCGGACATCTATAAAG 20381 28 100.0 43 ............................ AATTAATCAAACACGATTACCGTCCAGAATGGGCTGATGAAAG 20310 28 96.4 117 .....................A...... GAAACTTTTGAAGTAGCTAGCTTAGGAAATTTCCTGTAATAAGTACTTTGCAGTATCCTGTAATCAGCAACATCTTCTTACAAGGAGGAAGCTCCAAGAAGAAGACCTTAATGCAAA 20165 27 67.9 0 G....-.....A...A..AA.AT.T... | AC [20157] ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 5 28 92.9 59 TTTAAGTTAAACTTAGTAGTGTGAAAAT # Left flank : | # Right flank : CAAATAATTATGTGCAATCAGAGGAGGTTGTTTAATGAATGAAAGAATGAAGAATTATCCTAACATAAGTGAACTAGAAAAGGAAATCGAAAGAGTATGGGCTGTAAAAGTAAAGGAGGATTTGGAGAATAGAAATATAATGTATTATGAAGATACTTTAATTGCTTCATTTTATCACCATCTGAGGACCTTTATCGATA # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.82, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAGTTAAACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1228-875 **** Predicted by CRISPRDetect 2.3 *** >DXJF01000150.1-MAG TPA_asm: Candidatus Heimdallarchaeota archaeon isolate CR1378_bin_8 k127_258895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1228 29 100.0 36 ............................. GTTTCAACGTCCTGAATGTGCTTTGTAAGTTGTATA 1163 29 100.0 36 ............................. TGGATCCTGTGGTGAATAATGCCAAACCAATTAAAT 1098 29 100.0 36 ............................. CCTATATTCTGTGCTATCAATTCTTCAGCATCATTT 1033 29 100.0 36 ............................. AATTTTGACAATTGGTATGAAGCTTTAATTCTTCTT 968 29 100.0 35 ............................. AACCTGCCAGAACCCTATCCCCTGATGGTGTTTTG 904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 100.0 36 GTTTAAGTTATACTTAGTAGTGTGAAAAT # Left flank : AGAACATTTATGATTCAAGAAGAGATTTCAATCAATTAAAAGATAAACGTAAAGATTTCAGCGACAATATTATAAAGTAACAATTAGTAATAATATTAAGAAGGGTCAACCTTTATAAAGTTAATACAGAATCGGAGGTTGACCTGAAAGGTATCTCCTGAAATAAGAAACAAGTGCAATTAGATGAGATTTCAAGCATA # Right flank : AAATACAACTATATATTCTTGACATATTTGATTGGATACAATTGTAGAATGTTCATTTCCTAATTGATACTAGTAGATCTTTTAAATATCTATTATTTGGATTTATTGCGTATAAATAGTTTCCATGAACTCCTTTTTTCTCCTTTACTAAAATTAGTTTTTTCCTTTTCATTTCTTGAAGTATTTTTGGTATTCCTTTT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGTTATACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 152130-148432 **** Predicted by CRISPRDetect 2.3 *** >JAHQJS010000004.1-MAG: Candidatus Borrarchaeum weybense isolate lw60_2018_gm2_56 NODE_1_length_1298538_cov_26.214026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 152130 37 100.0 40 ..................................... CATACAACATATTCAGATATTGGTTTTGAGTTTATCTTAG 152053 37 100.0 39 ..................................... AAAAGCAGCAGGTCTTTGTAGAATCGAATTTACAATTAA 151977 37 100.0 39 ..................................... TCTCTAAGAAGTTTTAATTTTCTCCTAAAATCTGGCGGA 151901 37 100.0 40 ..................................... TCTTTCGTTGCTAACAATAGGGCTTTTTGCTCTGTCGTTC 151824 37 100.0 38 ..................................... AAGAGTTAAAGGCGACGTATAAAAAGCGCGTTGAGAAA 151749 37 100.0 40 ..................................... ACTGGTAGTGGATCTGGAGACTACGGAGACTTTCCTTCGG 151672 37 100.0 41 ..................................... TTTTTGTCTTTCCTCTTCTTCTCGTTTCTTTTTTATCTCAT 151594 37 100.0 38 ..................................... TAAAGATAAACTCGAAGTATTGTTCATGAATGGATATC 151519 37 100.0 38 ..................................... TATCTTGATCTCGCCATAAGAACTATGATTATAAACAA 151444 37 100.0 40 ..................................... TTAATTATTTCGAGTTCCTTGGTGGAAAATTTCCAACAAA 151367 37 100.0 38 ..................................... TCAAGTACGTAGAGATTATAGGTACAACTACCACCAAA 151292 37 100.0 39 ..................................... TTAACATTATATACTAATCTCGCAGGATGAAAAAACAAG 151216 37 100.0 40 ..................................... TTGGATCCATGTAGAATGTATGAAAACCATGAAAACAAGT 151139 37 100.0 38 ..................................... TGATAATTTGAAATCAGATGCATATTGCGTATAGTTAC 151064 37 100.0 38 ..................................... CTCTGGTTGTTGGTGAATCTCCAGTTTGTGTCTGTAAA 150989 37 100.0 41 ..................................... GTGTCATAAAGCGCGCCCATCGATATCTGGGCAACTACCGA 150911 37 100.0 38 ..................................... AAAAGAACATTATGAACTATCCTACCTTAGAAACTTAG 150836 37 100.0 38 ..................................... CTCTGGTTGTTGGTGAATCTCCAGTTTGTGTCTGTAAA 150761 37 100.0 41 ..................................... GTGTCATAAAGCGCGCCCATCGATATCTGGGCAACTACCGA 150683 37 100.0 38 ..................................... AAAAGAACATTATGAACTATCCTACCTTAGAAACTTAG 150608 37 100.0 38 ..................................... AAAACAATAATAAGTGTAGAAACGCTTCAACTACAGTA 150533 37 100.0 40 ..................................... TTTTGTACAGATTTTAGTTGCCATTTTTTTCCTCCTCACA 150456 37 100.0 38 ..................................... TCCATCCACTACCAGAAGTAGGGATATCTAACCGGATA 150381 37 100.0 39 ..................................... TTAGTAAATACTGAATGGTGTTGTAATCACGCACTCTGG 150305 37 100.0 37 ..................................... TTAAACAGGCTTTCGCTTGCTGTTCATTCATTCTTTA 150231 37 100.0 39 ..................................... CTTCAGTTATGGTATGGGTAACGAGATTAATGACGCTAA 150155 37 100.0 41 ..................................... AAAAAGGATGCCTTTAAGCTCCTCCAACATGAATTAGATAC 150077 37 100.0 39 ..................................... TCAATTGTTAGACACTTCATACATTGATTTGTATTTGAG 150001 37 100.0 39 ..................................... TAGTTTTACTACTTCATAGCGATCTAATTTCTCGATTGC 149925 37 100.0 38 ..................................... CATTAATCCAATGCTTTGTTTTTATTTTATGGTTCATG 149850 37 100.0 38 ..................................... ACTCATCACCAATGAGGGGGACGCTGCTCACGTCCTCC 149775 37 100.0 39 ..................................... ATTTGTTTACAATCGGAAGTGCGGGATCTTTGGCGGAAT 149699 37 100.0 38 ..................................... TAGGGTTTTGCTACTACTAATCTAATTGTATGATTTTC 149624 37 100.0 38 ..................................... AAATAGAATTATACCGTATCTTCGTTAGTTTCAAAAAT 149549 37 100.0 39 ..................................... TTTCATTATGTACTTTTTGTAATTGTGTAATTAAATCGC 149473 37 100.0 38 ..................................... CACGGCGATGCTCGTACCGAACAGTACCATGAGGATAT 149398 37 100.0 42 ..................................... TTTCATAAATCACCATTTCCAGTGGCAAGACCGTATGAGCTA 149319 37 100.0 40 ..................................... TGTGATAGAAGTCTTTCTAAACCATTTAAGGCAAAATTAA 149242 37 100.0 43 ..................................... ACAAGATGCTGTTGGCGCGTGAAATGATGTTCTCATGCAATTA 149162 37 100.0 39 ..................................... CAACGTTAGAGGCCATCTGGGGGGGAGTCTTACTTTTAA 149086 37 100.0 39 ..................................... ACAACTACAATCTCTTTTCTAATGTTATCCCCTCCTTTT 149010 37 100.0 46 ..................................... TCTGTAGGAGTACCAGGAGTAGTAGTACCTGATGTTTCTGCTATAG 148927 37 100.0 40 ..................................... TGATATTACCTGGAAAAAGCTTCCAAATGTACCAGGTACA 148850 37 100.0 38 ..................................... TCAAGATGGCAACCGGGGAATCGCGATTATCTGGAGAT 148775 37 100.0 39 ..................................... TAAAGCACCTATAAAAATAGGAGTTGGTTGAATGAGTGA 148699 37 100.0 40 ..................................... TTTAGTGCTCAAAAATTTCTCATAATTTCTCATTTTGTTT 148622 37 100.0 39 ..................................... CAATATTTTAGTTCAAGAGATGTTAATTCATTCATTTTG 148546 37 100.0 39 ..................................... TTCACTTAGTTCGATCATAGATAGTCCATTTTGTTTCTG 148470 37 100.0 0 ..................................... | G [148433] ========== ====== ====== ====== ===================================== ============================================== ================== 49 37 100.0 39 GTTGCAAAAGAATTCCTTAAGTAATAAGGATTGAAAT # Left flank : TTATAAGGAGGTGATCAAAAGCACGACCAGCAAAAATGGCAGTGTCATACCCAAAGGAGCAATGTCATAAAGGCTTCCCTGGAGAGCGTTTTCTGCTGGTATTTATAAAGAAGAGCTCAATTGCCCCTCCAGCACAAACAGCCTCTGAAAAGGGTGCACCATAAGGTTTTTTACCTATCTTATCTTCAATATAAACTAGG # Right flank : AAATTAGATTATTCTCAACCAATGTATAATGCATCATGTAATTTCTTTTCTTATACTTCTATACCAATCTAAAAACGCACAATTTATTTAAGCAAGCATTGAGTATATATATCTATATTGGAAATATATTTCGGTGAAAATCATGGGACGCACAGGTTCAACATACAAAGCTCGACTCATGTTTCTGATCAATACTTGCA # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGAATTCCTTAAGTAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 1493-30 **** Predicted by CRISPRDetect 2.3 *** >DXJN01000023.1-MAG TPA_asm: Candidatus Lokiarchaeota archaeon isolate MAG_17 k127_87282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1493 36 89.2 37 ....T.........T...........-.A........ AATGGGGAGATTGGATACATCAGTTTTGTGATGATTG A [1469] 1419 37 94.6 40 ..............T............C......... ATGATTATGTCGATAGGATCTACCTTACTGATCATTTTAT 1342 37 91.9 38 ..............T......T...........A... GCCGAATTAAAGGCCGAACTGAAAGATTTACTAAAGAA 1267 37 97.3 37 ..............................A...... AATTTATTAGAGGAAATACCGTTGTAATATTTACAGA 1193 37 97.3 39 ..............A...................... AGCAGAAAAACGACTCAAAATAGAAGTTCAAGCTCCTAA 1117 37 100.0 38 ..................................... TTAGGATTGGGGTATTTAGCTACAGCGGATGAATACAT 1042 37 97.3 43 ..............A...................... TTCAATATAATCAAGAAATTTCTGATGATTGAGCAGATCTTTT 962 37 91.9 38 ............C.A..................T... CCTTATCTAAAAATCCTTAAAGTCATAGAAAACATAAA 887 37 89.2 39 .................A......AT..A........ TTGTGAAATCACAGCTGTAGATACTACTACTTATGAATT 811 37 94.6 38 .........................A.......A... TGGATAAATATTGGAAAATGTGGGAAGGAAAGAAGTGC 736 37 100.0 39 ..................................... AACTATTTTGACAATACTAATACCAATTTTAGCAGTAAT 660 37 100.0 39 ..................................... TAAATTTTGTAATAAATGTCGTGATAAAATTTATAAAAA 584 37 100.0 37 ..................................... AAAACAAAATCGTCTATGTAGAGCCTCAGGTCCATAA 510 37 100.0 37 ..................................... TCATGGTACTATTAATGATATAATAATTTTTGCAAAT 436 37 100.0 35 ..................................... TTCAAAGTCTTGAAAAAGTATTTTATAATGCATGA 364 37 100.0 37 ..................................... TATTTTTCCATGTGGATATATTAGACGTTGGATGACT 290 37 100.0 38 ..................................... CGAATGGCTGATCCACAAATGATGGCTAAGTTCTACGA 215 37 91.9 38 ..............A........A...C......... AGCTACAAAACAGTTCCCCTAAGTCATACTGATTATAG 140 36 94.6 37 ..............A.......-.............. AAAAATTTTCACGAAGAAACATATATACGAAACTTCG 67 37 97.3 0 ...............................C..... | ========== ====== ====== ====== ===================================== =========================================== ================== 20 37 96.4 38 ATTTCAAAACTCTAGTTGAGTATTTCCTTATTGCTAC # Left flank : AGCTCCATATAAAATGTCATAATAGTAGAGGTTTGTATCCATATCTCCCGGATTTTCTGGCATTAAAAAATATGTTTACTGATAATCTTATTTTATCTATATAAATTTAAATTAAAAAATGTCTTTTTGATTCTGATTTCTTAATTATTTTTATATTTATATACTTTTTTGTTAGTGTTTTATTAAATTATATTAATATT # Right flank : CTTGATTTAAGAGATGGTGGCTATTATTGG # Questionable array : NO Score: 3.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:1, 7:0.54, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACTCTAGTTGAGTATTTCCTTATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [15-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-93.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 248-19 **** Predicted by CRISPRDetect 2.3 *** >JAHLWW010000199.1-MAG: Candidatus Jordarchaeum sp. JNZ_1113 MAG_1113_Ga0212120_1009742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 248 24 100.0 45 ........................ TTCAAGTTCTGAGCGGTAGTATTCGGCCCAATATTTGCCAGTTGG 179 24 100.0 43 ........................ TAATTTTTTCGACTTCCTGTGCTACATCTATGTCTTTTTTGTA 112 24 100.0 44 ........................ TCTTTATCAGTGCCTTCGCCTTTCTTCGTCTCGTCTAAGTCTTT 44 24 95.8 0 ...................A.... | A [30] ========== ====== ====== ====== ======================== ============================================= ================== 4 24 99.0 44 GAATCTCAAAAAGAGAATTGAAAG # Left flank : CCGAAGAGGTATTTCCGGAGACCAGACAGCCGGCTTCTAAGTGTACATCCTGCGGTTATAGGAAGGTGTGCCAACCTTATATACCGAAAAGCTTATATTCTTTCGCTGGAGTTTATAAAGTACCCAGCAAAAGGGGCACCAGCGAGAGGTTGGGAGAATAAAGTGGCCTAATTCCCGGAAAAACCGGGGAATTAGGCTCG # Right flank : GAGGCGCGTTATGTTTGAA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 24406-24015 **** Predicted by CRISPRDetect 2.3 *** >JAHLWT010000082.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H3_9 NODE_167_length_44968_cov_10.898871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 24406 26 100.0 35 .......................... CTTCATTATTTCCACTCCAAATTATTGATTACCCA 24345 26 100.0 35 .......................... ACGGTTGGTTTTTTATTTGTTGGTATGATAACCAC 24284 26 96.2 35 ...A...................... ACGTCTATACATAATATATCTTGCTTTATCATTAC 24223 26 92.3 35 ...C....T................. CTATAAGCCCATTCTCTTATATCATCTATTGTCAA 24162 26 100.0 35 .......................... AAGGGACTTTACCAATTCTTATGATTATCTTGTAA 24101 26 96.2 35 .........T................ AAGACAGTTTTATCAGAGAATTTCATTGCGTTTCT 24040 24 88.5 0 .A.-........-............. | G [24030] ========== ====== ====== ====== ========================== =================================== ================== 7 26 96.2 35 ATAGTATCCACACGAACAAGGATTGA # Left flank : AATGCTGTTATAAAACAGTATATACTTACTATTTAACTGATTGGAATGGTTTATTCTATTTCATGATTTTGGAACGTAGAGAAAAATTCCATTAGCAAACATAAAATTTTAAAAAATCTTAATTATTAAATAGAAGATGCGCTGTATATACTATAGGAGAAAATTTATTACGTAACCCTAATAGAATGTGAAAAAAGTAG # Right flank : AATTAAACATTTTTCTTCAATCCCTATTTTTATACATTTTATAAAAGGGATTGAATATACTTCCATATTCTATAAAAACAAGTTCTTTTTTTAATAGAGAATACAAATATCTGACTTCATTTGCTCCCGTTCAAGTAGTAGTTAAAGCGATTTTATCACAATTTTTCTTTATAAAGAACAGATTTATATTACGATTATAC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.26, 7:0.84, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGTATCCACACGAACAAGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 26971-26274 **** Predicted by CRISPRDetect 2.3 *** >JAHLWT010000082.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H3_9 NODE_167_length_44968_cov_10.898871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 26971 26 96.2 35 ...C...................... AAGACTCACCCGGTAGTTGTTTTACAATAGATTTT 26910 26 96.2 36 ...C...................... AATGCGTCTTCCAAGTGTAGCTCTTCACAACTCATC 26848 26 100.0 35 .......................... AATAATTGGATGTCCCTCTACACACACCCCATCAC 26787 26 100.0 34 .......................... AAATTCTAATTTTTACCATTCTTCATATCATCTC 26727 26 92.3 35 CG........................ CTTAGATAACACCGGATGAATTCACATAATCAATC 26666 26 100.0 35 .......................... CTGATTCTTAAAGATTTTAAAACCTTCTCTACTCT 26605 26 100.0 35 .......................... CTCGCTATCAAAACTGATGGAATGAAATTGTCTAC 26544 26 92.3 35 ...C.......A.............. CTAGCAGGATTCTTTGTTAAAAAATGTCCTAACAT 26483 26 96.2 33 .A........................ TTCCCATATCCAATATGTCCTGCTTCATGACAA 26424 26 92.3 35 ...A.......A.............. ATAGATTTTAGGACTTTTTCCACTTTTGGAGTAGC AA [26418] 26361 26 88.5 35 ..........TTA............. AATGAGTATCGCTCTTAGTATCGCCCTTAACCGAC 26300 26 92.3 0 ...A.......T.............. | ========== ====== ====== ====== ========================== ==================================== ================== 12 26 95.5 35 ATATTATCCACGCGAACAAGGATTGA # Left flank : ATTTGAGACTAATTTCTTAATACCCGATCATATAGGAATAGGAAAAGCAGTTTCTCACGGGTTTGGTATCGTGAAGAGATTTTCTAATGTTAATCTTTAATAATAAAATCTTAAATCACCGGTATTATAAAGGAGGTGTGCTGTAAATAGTATAGGTGGAGAATTTTTACGTAACTCCCATGGAATGATAGAAAAGTAGT # Right flank : AAAAAAAAAGAAAGGATTTTAGTCTCTCAAAAAAGAGGAAATGTTTTAAATATGTATTAGACAATATTATTAATTACTTCATGAAAGGTGTCTTTAAGAATGATCTTGATATCAAATATTGGTACTCGTGATGTACAGTATAAAGGGCAAATAATAGAAAAGACACAAGTTAGAGAATTTGGTAAAAAACTATTAGAAAA # Questionable array : NO Score: 6.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.26, 7:0.75, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTATCCACGCGAACAAGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 34310-34825 **** Predicted by CRISPRDetect 2.3 *** >JAHLWT010000082.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H3_9 NODE_167_length_44968_cov_10.898871, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34310 28 100.0 33 ............................ TTCATCCTCCAATATTTTAATTAGTTTTTTTCT 34371 28 100.0 33 ............................ GTATTGATACTTCCTAAAGATTGTTTCTCGTTT 34432 28 100.0 33 ............................ GCACCATTAGGATTATCATTTTTGAGATTTATA 34493 28 100.0 33 ............................ TCCATCCTCACATTCATAGTCTTGTGTTAAAGC 34554 28 100.0 33 ............................ GCCACATATAGGGTGAACAATCCAAGCAATTCT 34615 28 100.0 33 ............................ CGCTATCAAAACTGATGGAATGAAATTGTCTAC 34676 28 100.0 33 ............................ GTAAATATTCCGAAGCATTATCGTAATCTAATC 34737 28 100.0 33 ............................ TTGAACGCAAGCCACATATTGTATTTTGCATCC 34798 26 75.0 0 ...............T.C..T.AA..-- | T [34815] ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.2 33 ATACTATCCACACGAACAAGGATTGACT # Left flank : TTTTATTAATTTTTTGGATCGTTATGACTTATATTTGACAATTTTATATAAATATATACAGTTTGAAAGTCTGAAAAAAGTTCAAACAGATCATTTTAACCGATGAAAATAATAATAATCATTTTTATATAGATGGAACATTCTACATACTATAGAAAGAAATTTTTCACGTAACCCCAATAGAATATAAAAGAAGTAGT # Right flank : TCACAATCTTTATTAATCTTATACAAAAAGGGTTTAGCAATGTCATTAATGTTTGGAAGATTAGGATGGCCAAAAATTACTCAGTATAGAATAAATAAGATAATGGGTAAAGCAATAATGTTAAATAGGGCTAATCAGTGTAAAAGATCGATTGAATATTTAGAAAAAATCATTAAAATCGATCCTAAAATTAAGGAAGC # Questionable array : NO Score: 4.34 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:1, 7:0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACTATCCACACGAACAAGGATTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 8960-8809 **** Predicted by CRISPRDetect 2.3 *** >JAHLWT010000120.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H3_9 NODE_2277_length_10889_cov_10.338379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8960 28 100.0 34 ............................ GTATTATTGAAAAGTTGGATTAATCCAACTTTCC 8898 28 100.0 33 ............................ ATTCGTATTAATACGAATTTTAGAAATTCACTT 8837 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 3 28 100.0 34 AAAATGCCCTTGGATACATGGAGAAAAT # Left flank : TATTATAAAAGATTAGATTTCGTATATTTTTATAGTTATAATTACATTAAAACGTATAAGGGTTTTAAATAATCGCTTAGCCCATCAATTCATCGTTTATTGAAGTTTATGGAAGTATCAATAAAATGAGAATAGGGATTTCGATTACAGCAAACACTAAGATTTCATTCAAACTCATCATAGAATAGGATATAATTAGC # Right flank : GTCCGACATGACGGACTTTTAAATTTTCTCTTAACCTATGATGTGTAGAAAGAAAATCATATTATTTGGTATTTTACTCCTGAAGATATAAAATTCTTTATTGGCCATCAGGACCAGGATGCTTTTTTAAAAAATTGTGGATCCGTAACCAATTCGATTACGTTTAACCACGCATAATTGTAAATTATTAATGTATTAGT # Questionable array : NO Score: 4.27 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.87, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAATGCCCTTGGATACATGGAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5964-5469 **** Predicted by CRISPRDetect 2.3 *** >JAHLWS010000003.1-MAG: Candidatus Lokiarchaeota archaeon isolate 33X4 k141_10907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5964 30 96.7 36 A............................. ACACTAATATTACCTCCAGAGACCCAGCTTCCAGAA 5898 30 100.0 37 .............................. ACTGAAACATTAGAAGGTGCATGGTAAACACATACAA 5831 30 100.0 35 .............................. TCAACGGTTCCTGTTTCAAAGAAAGTTTGTGAGTG 5766 30 100.0 38 .............................. GTGCTAAAGTCTTAGCCCGTGTGCTCGCGAACTTCAAT 5698 30 96.7 39 ......C....................... ACAATCACTGTGTCTGAAGCAGAGTTACCAGATGTATCA 5629 30 96.7 36 ...............T.............. TTTACAACGGCTCTATATTCGTCGATCATATCCATG 5563 30 100.0 34 .............................. ACGTTGCCTTCTGTGTCATTTGCCCAATTTTAAT 5499 30 93.3 0 ...............T......G....... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 37 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : CATATTTTAATAATAACTAAAAGACTTAATGTAAAATGGATTAGAATGTGTTGGTGTAAATAGACTCTTAGTGAAAAGAAGAATGGAAATGTTTAAATAGGTAGACATCACATTTATAAATGAGTTAAGCTTCGACCGTGATCGATAGAGGTGACGGTAACAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACCT # Right flank : TTAGGAGATTGTGTTACATTAACACGGTTATTCATTCTCACGATTTCATAGCAATCCTTAAAAAACTGAAAATCCTAATATTATATGAAAAAGTAATTAGATAATCATAAAAACTAGAAATAGATTGAAACGTGTAGAGATATGTTCCATCTCCCCAGACAGACTCTCGTTTTATTTTAACTAGAAATAGATTGAAACCC # Questionable array : NO Score: 7.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.99, 7:0.78, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 29-258 **** Predicted by CRISPRDetect 2.3 *** >JAHLWS010000019.1-MAG: Candidatus Lokiarchaeota archaeon isolate 33X4 k141_26853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 29 30 90.0 36 A...A..A...................... TCGTAAAATGCGGGGTCTTTCGATAAATAATGTCAT A [30] 96 30 100.0 36 .............................. AACACAATATACTTAAATCTGGCATTTCTAAGTATC 162 30 100.0 36 .............................. GGATTATTATTAAGTGCTAAAACTTCTTCAGTTTTC 228 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : ATCATATTAAGAATTGACATAATTAAAAA # Right flank : AGATTACGTAGCATCTTTTTAATTCTTACCTTAACGTTTTATTTTAAATTCAGACTTTACTAGCTTTTTCATTAAATCGTTTGATTTGTTGAAATTTCCACTTTTAGATGCTCTAAAGATTTCTTCTTGCAGCTTTTTTACCCTTAAATTCATTGTAGTCCACTTTATTGTGATCCACCAATTGTTTTGGTTATATAGTT # Questionable array : NO Score: 7.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.99, 7:1.51, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 2 6807-6619 **** Predicted by CRISPRDetect 2.3 *** >JAHLWS010000019.1-MAG: Candidatus Lokiarchaeota archaeon isolate 33X4 k141_26853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6807 37 100.0 37 ..................................... CTACTTCGTCAAACTTTATACCTTCAACGATCTTCCT 6733 37 100.0 40 ..................................... ATCTGGTAAATCTAATTCTATCCTCATTTATTTTTCCAGA 6656 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 39 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : GTAATATCTTTATATCTATTTGGTCCATCCATCGTAA # Right flank : ACAAACTTTTTTTTCTTTTTTTTTAATTTGCCTATATACTTATGATATAGATATTACAGAGCTTAGGAGAAGGTTATGGGACGAGAAGCCCGCTTTATATCTTTAAGTTATTAATTTTTAGGTCTAAAATTTTTTTCTTTTATATAAAATCGAACAATATTTAGTTATATTTAGCTATATAGGAATTTAACGATTCCATT # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.00, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 186-1 **** Predicted by CRISPRDetect 2.3 *** >JAHLWS010000068.1-MAG: Candidatus Lokiarchaeota archaeon isolate 33X4 k141_63749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 186 37 100.0 37 ..................................... ATTTCTATTTTTTCGTTGGCATCTGTAAATCTTGGAC 112 37 100.0 37 ..................................... TCGACCACGCTTCACTATAATTTTACAAATCTCAAAA 38 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 38 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAAAATTCAAAAGCGTTAAGATTCAAGTTCATGTCTAAACTACTAAAAATTAGTATTATTTTTCTGAAATATTCTAAAAAATTGCTAATTCCTATTTTTTAAATAAAATTAAATCTTAATTTAATCGATTAAAATATTTACTAAAAGATTGAAAAAAAATATATATTTGTTCCTACATTATTATAATATAATATATAAGA # Right flank : C # Questionable array : NO Score: 7.96 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.56, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 12674-14148 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000023.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_229_length_54527_cov_38.761511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12674 37 100.0 40 ..................................... ACTCACCGTGTATTCTTTCATATATCCTTTTCCAGTTTGA 12751 37 100.0 38 ..................................... ACGTAGGAGGTAAAAATTATCAGACGTCTGATAATTGA 12826 37 100.0 40 ..................................... CGTTGATCCATTTCGGATTTATGACCTTCTATCATGGCAG 12903 37 100.0 37 ..................................... ATCTTGAGCAAAGAAAGCCCCTATATCCAAACTAAAA 12977 37 100.0 38 ..................................... TCTTAAGAGTTCTAAAGGGCAAATGATAACTATGGATA 13052 37 100.0 40 ..................................... CAAATAGACTGGGCACAAGTAAGGAAAGAAGCAGATAAAA 13129 37 100.0 40 ..................................... GAAGTAAGCGAAGAGAGTTACGGCGCGGTAGCGAAAGTAA 13206 37 100.0 39 ..................................... TTAATATAAAGTTTCTTGCCCCCTTTAGTTGTTGGTAAG 13282 37 100.0 40 ..................................... TAAGGGCGCAAGCGTTCTGCTCTGGTGAGAACCTCACTAC 13359 37 100.0 37 ..................................... ATTAGAGCGCTAAACTCTGGATTACCCGATAATTCTT 13433 37 100.0 39 ..................................... AGCAAGTGTTTCTGTATCTCCTTCCTCAAAGTCCCAAGC 13509 37 100.0 39 ..................................... CTTACGAAAAGCGTAATAATACCTTACGACCAGATTTAT 13585 37 100.0 40 ..................................... TAAGTTTAGCCCTAAAACGTGAATAATAAGTCTTGATTTT 13662 37 100.0 37 ..................................... CTTTAAAAGATCTGTCAAACCAACAGTGAGTATATTA 13736 37 100.0 38 ..................................... ATCGTTGAAGCACTTGTAGCCAAAAAGAAAGAACTTTT 13811 37 100.0 38 ..................................... ACAATGGACTCATGTTGGATTGGATAAGGTGGGGGTGT 13886 37 100.0 36 ..................................... ATACGAAAAAAGTCCAGTTGCTGAACCTGCAGCATT 13959 37 100.0 38 ..................................... TCGTAGGAGGAAAAACAGATGAGCACCAAAAAGAAGAA 14034 37 97.3 40 ...................................T. TTTCTGGGGGGGGAAATCTGTAATGCTTGGGGCTGTGAAA 14111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.9 39 GTTGCAAATCGTATCTCAAATACTAGAGAATTGAAAT # Left flank : TGGTAATAAAGGTAAAAACTATTGGAATTGTACCTTAAAAGAAATTTATTTAGTTCAGAAAATGTCTTGACTGAAAGGAGTAAGTCAACCTTCAACTAATGAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGATCGAGTCTAATAGAGAAAAACACGAGAAATAGGCTCG # Right flank : ATATTGTGAGAAAATAAGTGAAATTAGAAGAAAAATAGGTGCATAAAATTCTAGGAATTTTTATCGATAATTCCTATTCTCTAAAGGTTTACTACACAATTTTCTTGTAAAAACTGAAAGTATCTTCCATTAATAGAAGATGCTTTTTTTCTAGTAAAAAGGCTTGAAATCATAACATTTCTCATATTTAGTAATTTTCA # Questionable array : NO Score: 7.45 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATCGTATCTCAAATACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 22673-25069 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000023.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_229_length_54527_cov_38.761511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 22673 37 100.0 39 ..................................... TCTAAACTTGTATCCATGCGATGTGCCGAAGACTTACAA 22749 37 100.0 39 ..................................... TCTCTTGCATTCTTCTTTAATCCTTTTAGCTCCTTCGAG 22825 37 100.0 37 ..................................... TGTTTCATTAGAACGCTTATAAGACCACCCGCATCCA 22899 37 100.0 38 ..................................... TTAAAACAATTTCACTTGTAATTTTGCCTAAGTCTGCG 22974 37 100.0 40 ..................................... TTTTTGCTTCAGGAACAATTAAGCAAAGTGCGGGAGCTTG 23051 37 100.0 39 ..................................... ATTTCTTCTATCTCCTCAACTAAGTGAGTATATAGTTCA 23127 37 100.0 39 ..................................... TGTTTAGCTGCATCTAACATCAATCGTTTATCACAGATT 23203 37 100.0 39 ..................................... TTAAAGGTTTTAAATAACATTAAAACTCTTTTAAAGATT 23279 37 100.0 39 ..................................... CACAAGTCTTCCCATAGATACTATTAAGGATTATTTTGA 23355 37 100.0 40 ..................................... TATACGCCACAAAAGTTCAAGAAGCAATCTCTAACCAAAG 23432 37 100.0 39 ..................................... GCTGTTGATGACCTCATCACTGGCGTTAATATCAAATCA 23508 37 100.0 42 ..................................... TTATTCTAATATCTCTGTTAACCATCCCTCGAAGTTTTGAAA 23587 37 100.0 38 ..................................... TGAGCTTTTTGACAGGTCTGTATCCAACAACAAAAACA 23662 37 100.0 38 ..................................... CTAGCAGTGAAAACATTTGTGAATCCCCCTGCATTATC 23737 37 100.0 38 ..................................... CCTCCTTGTTTGTCTTTTAAGATTTTTTCACCTCAAAA 23812 37 100.0 40 ..................................... ATAAATAAAACAAGTAAGACTATTGGAATAAACACCAAAA 23889 37 100.0 39 ..................................... TAAATCTACTATAGATAGCTCTGAAATAGTCATGTTAGA 23965 37 100.0 38 ..................................... ACAAACGAAAGAACATCTAAAACATTTGTTCCATCAGT 24040 37 100.0 41 ..................................... CTTATAAATCTAATTTGTATCTTCATTTTTCCACATCCTAA 24118 37 100.0 41 ..................................... AAACTGTTCAAATTAGCCATTTTAGGCACTAAATGAGGGAA 24196 37 100.0 39 ..................................... TTTGAGTTTAAGTAACCCTTAAAGACTTTTGAATAAAAG 24272 37 100.0 39 ..................................... AAACCGCGTAGTTGATTTTGACCATTTATGTATAAATCG 24348 37 100.0 40 ..................................... TCTGTGGGTGGAATCACTGGTGGTTCTTCCTCTGCCTCAA 24425 37 100.0 40 ..................................... CTTATCATTTCTGAATGTTCATAAAGATTAAATTCAACAT 24502 37 100.0 40 ..................................... CTTATCATTTCTGAATGTTCATAAAGATTAAATTCAACAT 24579 37 100.0 38 ..................................... CAGGCTAGAATAGATTGTTTGATTAGGTTTATCTAGTT 24654 37 100.0 41 ..................................... ACAAAGTAGAGTAATGACAGTTACAAGCGAAAGTAAAATAG 24732 37 100.0 39 ..................................... ACTTTAAAAATTGGTCGGCATCGTTTTTGGTCAAACTTC 24808 37 100.0 39 ..................................... TCTTGTTTAGTCTCCTTTTGTAAAAGTTCAATTGTTATT 24884 37 100.0 37 ..................................... TTTACCGATTAAGGTAAGGCATCCAGAGGAAGCAGAT 24958 37 100.0 37 ..................................... TTATTTTCCCTTCCTTCATTAATCTCACAGTATTATA 25032 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 32 37 100.0 39 GTTGCATATTGAATCTCACTTACTAGAGAATTGAAAT # Left flank : TTATGACATTTAAAGATTTTCAGTAAAAGTAATGACTAGCTTGATTATTCTGATTTAAATATAAAAAAATAAACAAGTTGAATTAATAGGTTGAGAGAAGAAAATTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAAGCGAAAATAAAAACGCACCTAATTAAGGAATACTAGAGAAAATGGCTCG # Right flank : CATCTGTTTATGAATCTAATCAAATCTGTATATTTATATGGAATTTGTTCAAACAGAAACTAATAAATGTAGATTATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCAATTTACTATTACCAGCTCCTGTTTTAATCTTTATATAGAATTATTATTTGT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCACTTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 29347-31821 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000023.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_229_length_54527_cov_38.761511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 29347 37 100.0 39 ..................................... TTTCCCTTAAGTCTTTTGCCATTTTGTAAAATCTTAATG 29423 37 100.0 39 ..................................... AGATAAAAACCGGCAACATCATTAACATAATCAGAACTG 29499 37 100.0 39 ..................................... TCGTTCTGATAGCTCATTATATCTTCTTTTTTGTATTTG 29575 37 100.0 39 ..................................... AACCCGCAGTAGGCAAATAATAGGTGTGTAAAAGTATTA 29651 37 100.0 39 ..................................... AACAACGAGAGGAGCAGGAGGTTCTGTAAAATCGGGAGG 29727 37 100.0 40 ..................................... CTTTAACGGGTCTTGACCATTCCCCTGAAAATCCCGATTG 29804 37 100.0 39 ..................................... AAACAAATATCTATCATTTCTATTGTTTTATCAGCAGTA 29880 37 100.0 40 ..................................... TTAGGTAAGGATACGTATTGCGTGTCGTTCGCATTCTTGG 29957 37 100.0 39 ..................................... TTTGTTTGTAAGATATCATCAATAATTATTTTCTTATCT 30033 37 100.0 37 ..................................... TCACAACAAGGTACGCAATTGATGATCCTGATAAAAA 30107 37 100.0 39 ..................................... CTACACCGACTACAGAGTTTAGATCTATGTTGTTGTTGC 30183 37 100.0 39 ..................................... TTGTATAGCATGATACATCTGATAACCGTCATAGATTGA 30259 37 100.0 40 ..................................... TAACCTCTTTGAAAATCTATAGCAGTTTGACCTCTGATAA 30336 37 100.0 39 ..................................... TATTTTTAACTGTTAATCTCTTAACTAACAAGTTTTGTA 30412 37 100.0 41 ..................................... CATATTAGCCTAACAACACCGTTATTTCTTCTGATGTGCCA 30490 37 100.0 39 ..................................... ATCTGAAAGTAATTAACGCCGTCCAATGAGCCGTAGAGT 30566 37 100.0 39 ..................................... TTGCTATAAAATAAAGTCATGTAAATAATACATCAGAAA 30642 37 100.0 39 ..................................... TGAAACTTTGGCTTATCGCTTACCTTCAAGAACTGAATT 30718 37 100.0 36 ..................................... TGAACAACTTTTACGTGATACTGATAATTTTAGATA 30791 37 100.0 38 ..................................... ATATTACCACTTTGATGGCGCAAACGTTGATAGGTTCA 30866 37 100.0 38 ..................................... AACTCCTTTTTTAGCTCTCATGGCTTTGAGATTCGCAA 30941 37 100.0 40 ..................................... CAAGATAGCTTAAATGATAAGAAATTAGTTTCCCATTGTG 31018 37 100.0 41 ..................................... ATTACCACCATTAATTCGCCAGATGAGGTAGCCATTTGTAA 31096 37 97.3 40 .........C........................... TATGCAGTAGCTGGAGTTTATGCTAAACAAGAAACTGACA 31173 37 100.0 39 ..................................... ACACACACTTACCTAAACTTTTCAGTTGAGGCAATGTAT 31249 37 97.3 37 .........C........................... ATTGTAGTTGCACTCACTCCTGACAGTTTTTCAGAAG 31323 37 100.0 39 ..................................... GATGCCTTGGCATGTCAGCATCACAAAGAGCGTAGAGCC 31399 37 97.3 39 .........C........................... TAATCTTTGAAGCAGAAGAATGTGACGAGTGTGGATATC 31475 37 100.0 38 ..................................... ATAACGATGTTTAGACGTTCTAAACTTGATATCTTCAA 31550 37 97.3 38 .........C........................... TAAGCCTAAATCAAAAGCGTTGGGAAATTTCAAATTAA 31625 37 97.3 39 .........C........................... CACAGAATAAGTGCTAAGACCACCACTAGTAACACCAGA 31701 37 97.3 37 .........C........................... AATTGGAAGTCCTCCTTCGGGGGTTCCCTTAACAAAG 31775 37 86.5 0 ................T.......G......ACT... | TGTGAT,TTT [31794,31804] ========== ====== ====== ====== ===================================== ========================================= ================== 33 37 99.1 39 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CAACTAATCATAGAAACAGAATTATTACCAGAGGAAACAGAACAAGAAAGAAAATGTGTTGACTGTGAATATAGGAATATATGTCAACCAAGCAACTATTAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGATCGAGTCTAATAGAGAAAAACACGAGAAATTGGCTCGG # Right flank : TCTCTTTACAGAAGATTTGTTTCGTTAAAATTGAAATGTTATTTCCTTTAGGAATAATAAAATTAAGAAAATGATCTAAATCTATATTTTTTGGTAAAGAGAAACTTTCATAATCCCAGAATATTGCAACTCTACGATGACTTGGGCCTGTTTCAATATTTTCTGTACTTTGTTTAAGCGAACTGAAAAAGTCAATAGTG # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 279-19 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000040.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_2470_length_13211_cov_39.784813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 279 37 100.0 38 ..................................... CAAGTCCGAGTTTGACTTGAAGAAAAGAGTCTCTATTC 204 37 100.0 38 ..................................... TCCAGATCGTTTTTGATGGTTCTTTCCCTTTTTAAAAG 129 37 100.0 36 ..................................... AGCAGCAACTCTTTCTTCAAGCTCAAGCTTGAAGAA 56 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 38 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : AATAACAATAATATGAACAATAAAAAACGTTTTCTTAGAGCCTTAAACGAAGTAACGTAAAAAGAGAAAAAATGCTAGAGCTCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAATAGCGTACGCTACAACTAGTATACGAGGTGAAAGTGAAAACTGATAAAACGTTTACTAGAACCAGAATCCCCGCG # Right flank : CTTCTAATAAACCAGCGGT # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.96, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 13146-12357 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000040.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_2470_length_13211_cov_39.784813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 13146 37 100.0 40 ..................................... AACTATTCTGCTAACTTTTGTTCCTTTTTAGCAGTCTTTT 13069 37 100.0 37 ..................................... ATTTAGCTTTTCTTAGATCGGCAGTAAGGTTAACGCC 12995 37 100.0 35 ..................................... TTCAAGGTCAAGCAATATCCAATGCCTGATTCTTC 12923 37 100.0 48 ..................................... TTCTAGAGTTAGAGCCACGCCTTATGATGGGGATTCTTATAATAACAA 12838 37 100.0 38 ..................................... TCGATAAACAATCTATAAACCGTGTAAAACGGTTCATA 12763 37 100.0 40 ..................................... TTGGTTTCTTCAAGCCAAGAGTCTATATGAACAAGTTTGA 12686 37 100.0 37 ..................................... TTAAGAGGACTTTTCCAGTCCTCATCTAAAATTTCTA 12612 37 100.0 37 ..................................... CTAAGAACAGGATTAGTGGTGTCTTGTACTGTGACAA 12538 37 97.3 41 .............................A....... GTCAACCCTGGTAGACAACATAATGCCCCTGAGGTTAACAC 12460 37 91.9 29 ..C...............T............A..... GTAACATTTTTTAAGGTGCATTTTAGTCA Deletion [12394] 12394 36 81.1 0 ........T..A...TA.-..........A.A..... | G [12373] ========== ====== ====== ====== ===================================== ================================================ ================== 11 37 97.3 38 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : CTAGCTCCGTCAAAAGAGGAGGTGGTAACATTTAGCTTTTCTTAGATCGGCAGTATGGTTAACGC # Right flank : TTATGATAACAGTTTGGATTCATTCTCCTTCTATCCCATAACTATTCTCTAACTATAGTAGAAGAAGAGGAGATAACTGATAATTGACAAATTTAATCATAACTCCTTGAAATGTACAAATTGTATAGTTTTTTATAAAATAGGACCTAGTCGTTTTCATGATCTACTCACGCACGTTATGAAACTTGGTTTAACTTGCC # Questionable array : NO Score: 4.32 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 73720-73094 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000016.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_93_length_85958_cov_42.073595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 73720 29 100.0 55 ............................. GAGACTTTTTACTGTTCTCCTTACCTCCCTTGAAAGGAAGGTAAGGGGTTACATT 73636 29 100.0 44 ............................. TTGAAAGCCATCTCGGCTTCTATCTGAACAATTTTCGTTACATT 73563 29 100.0 44 ............................. CAAAGAGCGTCACACATCGCCCTTTTTTGATTCTCCGTTACATT 73490 29 100.0 45 ............................. GCGAAATCTCATTTTGCCCTTTCACCTCCTTGTTGTTGTTACATT 73416 29 100.0 44 ............................. CTTAATTCTTTTTAATTTTCCCATGATAATTAACTGGTTACAAA 73343 29 100.0 46 ............................. TTTTGTATAGTTGTGTAAGAGAGTTCTTCTTGATGGATGTTACAAA 73268 29 100.0 44 ............................. CTAGCAAAATCGCCGTCGTAAAAGGTTTCAATAGTTGTTACAAA 73195 29 100.0 44 ............................. TTACTATTAGTAGTGTTAAACCAGATAGTGTCAGAAGATGCAAA 73122 28 82.8 0 ......T...T...-...A...A...... | ========== ====== ====== ====== ============================= ======================================================= ================== 9 29 98.1 46 CTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : TAATATGAACAATAAAAAACGTTTTCTTAGAGCCTTAAACGAAGTAACGTAAAAAGAGAAAAAATGCTAGAGCTCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAATAGCGTACGCTACAACTAGTATACGAGGTGAAAGTGAAAACTGATAAAACGTTTACTAGAACCAGAATCCCCGCGGTTACATT # Right flank : TTTTTTTGCTCCCCCTCGTTAAAAAAATTTTTAAACTGATACAAACTAGCTTTGTTAATAATCAGTGAATTTGTTGATTTTTATTTACGCTTGAATTACTTTAATTCAGTTATTAATTTTTTATTTGCTTTTTTTTCTTTTTCTTCGATTTCTTAATCCTTAAATAGTTTTATTGTTACCCACTTACTTATAGGTGGTTA # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:1, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 80252-80435 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000016.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_93_length_85958_cov_42.073595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 80252 37 100.0 36 ..................................... GAAAAGTTTCTTTCCTGAGGGGATTGCAAAGGGCAT 80325 37 100.0 36 ..................................... ATCCTTTGATTATGTTGTTCAAGTTTGGCTAAGTAT 80398 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTTACAAACTAGCTTCGTCAAAAGAGAAGGTGGTAAC # Left flank : AGAAGGAGAAAAAAACGAAGAAGAGGAAGAAGAAGGAGACATAAAATGGAAAAAGAAAAGAAATATATCAAGTTTTAGATAAGCAAAGAGAAGAAAAAAAGAAAAGGTTAATAAAGAAAAAAAAGAAGAAGAAAGAAGAAAAAAAAAAGATAAGAAAAAGAGAAATGGAAAAAACAAGGACTAGAAGGAATTTCGTTGCG # Right flank : CAATACGATTGATCAAGGAATCAGAATTATATAACAAAAACGATTTTTATGTGCAAATTCTTAGGTTAAAGCTGTAATATTGCTACCAGCGTCTCATTTTCTTTTAGACTTTTGAAAGAATATTCTATCAGGATCTATCATGCAGGTTCTTCTTCACCCATTCCCCAAGAGAGATTCTAATCTTCTTTCTTGGGCTTGAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:2.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAACTAGCTTCGTCAAAAGAGAAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 85942-84651 **** Predicted by CRISPRDetect 2.3 *** >JAHLWR010000016.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 18H4_34 NODE_93_length_85958_cov_42.073595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 85942 37 100.0 36 ..................................... TTCTAATAAACCAGCGGTCATTCTACCGAACGTGCC 85869 37 100.0 38 ..................................... ATCTTTCTCCGCTTAACTTACTATACTTTTCTCCAAAC 85794 37 100.0 37 ..................................... TGAGGATAAACTCTGCGGGCCTTTTCAAGAAGCAATC 85720 37 100.0 38 ..................................... TACATCTGGAGCCCACCTTTTATACCCCAACTGATCAG 85645 37 100.0 36 ..................................... GGGGAGAATTAATTGAGCAGAAGTTAGGATATTCAC 85572 37 100.0 38 ..................................... AAAAACTTGCAGTCCACAATCCTCCGCACATTAAAGAC 85497 37 100.0 38 ..................................... CTTAAAGTAACCAATTTGTTTAAGAATATGTCAAGGGC 85422 37 100.0 38 ..................................... CTTAAAGTAACCAATTTGTTTAAGAATATGTCAAGGGC 85347 37 100.0 36 ..................................... TTCATTATTCAGTTTTTGTAAAACTCACCTTATTAA 85274 37 100.0 36 ..................................... CTACAAAGTGCTCCGTAACGAAGACGTTCTTGAGTC 85201 37 100.0 37 ..................................... TACTTCCATGACAGTGTTGTACTTCTTTTCTGATTTT 85127 37 100.0 36 ..................................... AAGATTATAAATCAGTTCTTGGGAAGCCACTTAAGC 85054 37 100.0 36 ..................................... GCGCAGGTCATTATTGATTGGCTTCTGCTTGAGAAG 84981 37 100.0 35 ..................................... GGGTTTCTGTGATTATCAGCCAGTTCTCCTGATAA 84909 37 100.0 36 ..................................... TACTCTATCCTTGCAGCTTCGTAAAAACTAGTAGAA 84836 37 100.0 35 ..................................... CCAAAATTTCTTCTTGGGAGGGTGGCTGAGAGAGG 84764 37 100.0 39 ..................................... GTATAGACATTTTGAGTTAAATAGACAGAATCAGCTCTA 84688 36 81.1 0 ........T......AA.-..........A.AA.... | G [84667] ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 98.9 37 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : TATACTTTTCTCCAAA # Right flank : TTATGATAACACTTCGGATTCATTCTCCTTCTATCCCATAACTATTCTCTAACTATAGTAGAAGAAGAGGAGATAACTGATAATTGACAAATTTAATCATAACTCTTTGAAATGTGCAAATTGTATAGTTTTTTATAAAATAGGATCTAGTCGTTTTCATGATCACACTATACTTTTTTCATTAAATTATGATTTTTCTT # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 72336-68997 **** Predicted by CRISPRDetect 2.3 *** >JAHLWP010000014.1-MAG: Candidatus Lokiarchaeota archaeon isolate 9R3_44 NODE_19_length_87461_cov_243.891518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 72336 37 100.0 38 ..................................... TCGTATGCTTCATTCATTTCGGTATGAGGTTCAAACTC 72261 37 100.0 39 ..................................... CTTAAATCAAAATCGTGTAAAATAAATACAGATAATCTT 72185 37 97.3 40 ..G.................................. ACAGCGACCATAACAATATCTCTTACTCCGACAGTCATTA 72108 37 94.6 41 ..G.................................C AACTGAACATTTAAAATATCAGTAGAAATCATTGGATCTTT 72030 37 100.0 37 ..................................... GTTATAGACATAGAATATTTTTTATGTGACATTTTGT 71956 37 100.0 42 ..................................... CTCGATTCCAGCCAACCATATAATCGTTGTCCCATGAATAAT C [71919] 71876 37 83.8 39 .ATA..T.....A.......................C CCATCTTGTTTGCGTATATCTCCATTAAAACCTATGATA 71800 37 100.0 39 ..................................... GACTTAATAACTCTGGGAAATGTACCGAATCCATCAGTC 71724 37 100.0 39 ..................................... AAACTGAAGTCTCCCCTATGTTGATTTGCAGAAATTAAC 71648 37 100.0 36 ..................................... ATCATTTCTCTTGGTGAATATATATATGCTTCTGGT 71575 37 97.3 36 ....................................C AATATTTAGGTTTTTCTATAAATACTTTTGAATGAG 71502 37 100.0 38 ..................................... ATCTTACATTCCTCCTCTGTTTTACCAGATTTAAGACA 71427 37 97.3 39 .C................................... TTCTTAAAGACTACATAAGCATTTCCTTTAGTTCCTAAT 71351 37 94.6 36 .......CC............................ ATCTTGAACTAAAGCTTCTCTTATTTTTTTCATGTG C [71314] 71277 37 100.0 35 ..................................... TTGAATCTAAGAGGCCATATTTTCCTGATAACATT C [71240] 71204 37 94.6 38 A...................................C CGCCCGTAGGCTTCTTTATCCCAAATGCTTTTTTAATA 71129 37 94.6 38 A...................................C ACATTATTATACCAGTAAGGATTGCGTTTTAAAGCTAA 71054 37 97.3 43 A.................................... TTTAAAATAGGTTTCCCCCGCCATGGATGAAAGATTATTATTC 70974 37 97.3 39 ...A................................. TTATGGGATGCATCATAATGAGTTCTTATAAATATTAAT 70898 37 100.0 36 ..................................... TAATGATAAATTCATTCTGAGCAAGTAAGTCTCCAA C [70861] 70824 37 86.5 39 .ATA..T.....A........................ ATTAGATGACCACAAAATATATAATCAACCGATTCATTT 70748 37 97.3 40 .........................A........... GCAAATACACATGAATAATCCACGATAAGAATGCATTGTA 70671 37 100.0 36 ..................................... GCTATAGCCAAATATCCTAATCCAAGTGGTAAAACA 70598 37 100.0 39 ..................................... ATTAATTCATGGCAATTATCACATGCAGGTCCAGGAGCA 70522 37 97.3 36 ....A................................ TTCGAAATTTGATGAAATCTCTCATAAAACTCTGGT 70449 37 97.3 36 ..............................A...... ACTAATTTGAAAGTTTGTGTATCATGATTTTTCCAT 70376 37 100.0 37 ..................................... TCATTCAAGGCAATATAGTTAAACGTGCAAGATTTTG 70302 37 94.6 40 ...A.....................A........... CAATATCTTGCAATACGTTTGAATATGTTTGTTACGTTAT 70225 37 100.0 37 ..................................... TGTTTCGCTAAATCTTTAGGTGTTTTCGATAAGTTCA 70151 37 97.3 107 ....................................C CTATTCAATGTATATTTAGACATATACTTCTTTACATATGGTACTTTTATATTCGCGATAAAAAAATAAATATTAGTAATTAGCTTATTATATTATATATAATAAGA 70007 37 100.0 39 ..................................... TAAGGCTCTGCTACATCGCCTTTATATAAAATTCCGCCT 69931 37 100.0 37 ..................................... TTCTCGTAAGCATATGCTATCTCTTCCGCAGTTCCAA 69857 37 97.3 43 ..G.................................. AGACCGAGAGGTAATACGATTCCAATTACTAATAGACTTACAG 69777 37 100.0 36 ..................................... CCTATTGTATCTCCTGTTCCATTTGTAAAGGTAAAA 69704 37 100.0 35 ..................................... ACTTGTATCAACTTGTTAATCGGAGTATGATATTC 69632 37 94.6 35 ..........G..........G............... TCTGTGGTATCGTGGAAGTAAATTAATCTTTTAAG 69560 37 100.0 38 ..................................... TAAGATTTAGATTATGGTTTAAATCATTCAATACTAGG 69485 37 94.6 38 ...................G................C AAAGCAATTCTTAAACTAACTAATAAAGTATCATCATA 69410 37 100.0 39 ..................................... CTTTTCTAACCCCCTTTTCAGAATCAGATGATATTATAT 69334 37 94.6 38 ...............A....................C GCATTAGCATTATACATTTTATAGATGTCCATAATCAT 69259 37 97.3 38 ...........T......................... ATAATAACAATTTTCACAAGCTTTAATAAGCATTTTAT 69184 37 97.3 37 ..T.................................. TCATTCAAGGCAATATAGTTAAACGTGCAAGATTTTG 69110 37 97.3 39 ...A................................. TTGATTTTATAAATTGTTGAAATTTTTACCAACTCCTTT 69034 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 44 37 97.5 40 GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Left flank : TTTAAATAAATTGCAAATTGTTCAATGCTCGATTAGGGATCATAAAAAATAACTTTTTTGTTATTAAAGTTTGGAAGAAATAAATCAAAAAGAGAGAAGATTACAACAAAAATAAAGAAAATTTTTTGTTTTAATATGAAATTTTTATTAAGTTAACAAAAATTAAATATACTTTCTTTTTATATTATATAGTAACTAGA # Right flank : ACATTAGAGGGTATTTGGAGCAAATTTTTGTTTGAACATCTTACGAGAAAGCTTCAACTTTTTAACTTTAGAGGATTTACTTTCATTGACCACCAGAAAAATTCCAATACCAAGCGCTATAAGAAATATAGTAATTTGGGCTATAATACTGCTTAAAATAAATAAGTAACTGCCAATACGGGGAGAGCTCTTTAATGGTA # Questionable array : NO Score: 6.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:1, 7:0.39, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 3 87289-86506 **** Predicted by CRISPRDetect 2.3 *** >JAHLWP010000014.1-MAG: Candidatus Lokiarchaeota archaeon isolate 9R3_44 NODE_19_length_87461_cov_243.891518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 87289 37 100.0 37 ..................................... ACAGGATATCCTTTAGCAATAGTACAATTGATCTGAG 87215 37 100.0 37 ..................................... GAAAACCCTCTAATCCACAACACTCACACTGCATATT 87140 37 100.0 36 ..................................... GATTCATATCACATGGATAATCCCATGAGAAATAAT 87066 37 100.0 37 ..................................... TTCATTTCTCAGCCCTCTTCTTTTGCCATTTCTCTTT 86992 37 100.0 37 ..................................... GTTTTCTTTTTACCCCATGTGCAAGAATTGTGCCAAC 86918 37 100.0 39 ..................................... GTATCTATGAAAGGATAAATATATTTATCTATCTTTATA 86842 37 100.0 37 ..................................... AATACAGCAGTAGCATTAACATTGGAAGCATTAATAT 86768 37 97.3 38 A.................................... TTAAGATCGTTTCCCATAACCTTGTGAATTGTGACACC 86693 37 100.0 38 ..................................... TTTCTCAGCCCTCTTTTGCCATTTCTCATATTTATCCC 86618 37 100.0 38 ..................................... GTAAACTTAATATTTGCTTCATTTGTCTTGCTAAACAA 86543 37 97.3 0 ...............A..................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.5 38 GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Left flank : GAAGAAATAAATCAAAAAGAGAGAAGATTACAACAAAAATAAAGAAAATTTTTTGATAAAACAATAATTTTGGAAAAAAATATTGAAAATTTTTTGTTTTAATATGAAATTTTTATTAAGTTAACAAAAATTAAATATATTTTCTTTTCATATTATATTATATAGTAATATA # Right flank : GCATATATTAAAGCATTAGAGAAAGATCCAAAAAGTAATTCTACACTAAGTCATCTAGCTTTAACATATAAGTTCTTAGGAGAGCATGAATTGGCAAAAAACTATGCTGAACAAGCTTTGCGCATAGAACCAAAAGATCAAGTAGCAAAAAGGGTTATGGAAGAATATCAAGAATAATTGAATAAGTTTCTCATCCTTAT # Questionable array : NO Score: 7.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.73, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 14165-14376 **** Predicted by CRISPRDetect 2.3 *** >JAHLWP010000016.1-MAG: Candidatus Lokiarchaeota archaeon isolate 9R3_44 NODE_21_length_81510_cov_265.983611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14165 29 100.0 32 ............................. GATCGGTAAATTATTTTTACCGATCTTTTTAT 14226 29 100.0 31 ............................. TTTTGATAGCTGGATAAATTTGGACACCTTC 14286 29 96.6 32 G............................ ATAATAGGTGGGTACATTTTGTACCCTCCTCT 14347 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 TAAAATACCCTTGCAGGTAGAGATTAAAT # Left flank : TATTATAAAAATTATATTCTCGTATATTTTTATATATATATTTATATTAATACTTATTAATTTTTTGAATAATAGCTTAATCTGTCATTTCATTGTTTATTGAAGTAATACGAAAGTGCTTATAAAAAGGGATTAGAACGCTTAGAAATACTAAACTCGTCTCTTTTGGCTCTACCTATTTAAAAATAAGAGAAATTTAG # Right flank : ATTTTGAAGGCGTTATTTCAGATCACGCCTTCCCTACGATGCCTTCTTTTTTTTTATTAAGAGAATATAATATGATTTATCTATCTTGGAAAATAAAATTAATAAATTCTCCTGATAATATTTTTTTGCAATAAAATTTTAAAAACCGTATTTGAATTTTGAGATTAGAACCTTTCTATACTTCTTTAAGATTATTATTA # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:1, 7:1.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAATACCCTTGCAGGTAGAGATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 15438-17632 **** Predicted by CRISPRDetect 2.3 *** >JAHLWP010000056.1-MAG: Candidatus Lokiarchaeota archaeon isolate 9R3_44 NODE_591_length_17650_cov_240.577891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================================================= ================== 15438 35 97.1 37 ..............A.................... CTCCATCCAATTCGGTTGAATCTTTATGGCATTTTAG 15510 35 100.0 40 ................................... CAAACCAATGCACATAATAAAAAATAACCAAATTGGAATG 15585 35 94.3 43 ..............A................T... TTCATAATCCATCTCTATCCCACATTCCTGACAAGAAGTTTCG 15663 35 97.1 41 ..........................G........ TTCATCCTCCACATCATTTAGTCTGATATCTTTAAAAATAG 15739 35 100.0 41 ................................... TGTAGTATTCAGAGAGGTTTATATATATCCTAAGAATATTG 15815 35 100.0 40 ................................... TAGTGTATCAAGCTGTTTTAAATCTGTAATATCAATAAGG 15890 35 100.0 38 ................................... TAATAAAATCAATAAAATTATTAATCCAATTATTAAAG 15963 35 100.0 41 ................................... TTCATCCTCCACATCATTTAGTCTGATATCTTTAAAAATAG 16039 35 100.0 40 ................................... TTATATAAGATTCAAAGAAACACTGATTCCGAACCACTCG 16114 35 100.0 109 ................................... CCTATTCAATGTATATTTAGACATATACTTCTTTACATATGGTACTTTTATATTCGCGATAAAAAAATAAATATTAGTAATTAGCTTATTATATTATATATAATAAGAG 16258 35 100.0 38 ................................... TCCACACATATCGCAGGTTTCTGGATTTTGGCGATTAG 16331 35 100.0 39 ................................... TAACAATAAACCATTTAGTAAACTCCCATAAGGAACTTG 16405 35 100.0 39 ................................... TAAAGAATAGGTGGCATTATAATGTCCAGTGTATTGTGG 16479 35 100.0 40 ................................... CAATATTGGATTTCCATTATATGCACCAGTCATTAAACCA 16554 35 100.0 43 ................................... CCATGTTAAAATATTTATTAATCTCTTTTGCTCAGGAGTTAAA 16632 35 100.0 40 ................................... CACATTTTCATCAACAGATATTTGAACTGTATGTCTATTA 16707 35 100.0 40 ................................... CACTCTATCTGGCACCCAAAATATATTTTTACTTAATTTA 16782 35 100.0 40 ................................... CCATTGGCATTCAATTATAACAAAACCGAGCGTTTTTTCA 16857 35 100.0 40 ................................... TTTAAAACATTCAAATTTCTTCCCACATTCCAAACAAATG 16932 35 100.0 38 ................................... TATAGGATATCCTTTAGCAATTGTACAGTTAATTTGGG 17005 34 97.1 38 .......................-........... CTAAATTTATTTAAAGTCTCTTTAATGCCTTGTTTTAA 17077 35 100.0 41 ................................... CTCGTAAATACTATCACTCCTACTTGTGCTAAAACATACAA 17153 35 100.0 39 ................................... TCTGATTCATTCCATACTCCCGACCAACTAACATTATAG 17227 35 100.0 40 ................................... TTTATAACACGAATCGCAATATTTTAATTTAGTATATGGG 17302 35 100.0 40 ................................... CGATTGCTTTAATAAGATTATATATTTTTCTAAGGTTTTG 17377 35 100.0 39 ................................... TAACTGATCACCAGTGATATATTCATAGGTACTTCCTTG 17451 35 100.0 40 ................................... TCTTAAATTTGCTCATATGGTCAATCCACGCTACAGCTCG 17526 35 100.0 36 ................................... TGGTAAACCCATATATTTTCGATAAAATTCTAAATG 17597 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================================================================================= ================== 29 35 99.5 42 TCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAA # Left flank : AATTATCTCTTTTAAAATCTTTTTGTTCATTAATTCTGTGAAATCTAAGGAATTTTTGGTAAAGAAATACTATTAATCATAATAATATAATAATTGTGAACCAATTAAAAAATATAAATAACATAAAAAAAGGTACTTTTATATTCGCGATAAAAAAATAAATATTAGTAATTATCTTATTATATATAATATAATAAGAG # Right flank : CTGATTCATTCCATACTC # Questionable array : NO Score: 6.43 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.39, 7:0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 26490-28166 **** Predicted by CRISPRDetect 2.3 *** >JAHLWJ010000016.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_29 NODE_412_length_28222_cov_28.853943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26490 29 100.0 33 ............................. TAAAGTAAAGTCAAGTAAAGTAAGTAAAGTAAA 26552 29 100.0 32 ............................. TATATTTACCCTTTTTAGGAGGGGATATGGAA 26613 29 100.0 32 ............................. CTCTTCCTTTAACTTTTTTAGTTGATAATTCT 26674 29 100.0 32 ............................. AAAAATAGTTGTTCGAGCAACAAAAAATATTC 26735 29 100.0 32 ............................. TATAGATAATAATGGCGGGGTAAGGTTTTCTC 26796 29 100.0 32 ............................. TTCAGAATTACCCAACTTCTCAAACTCAATAT 26857 29 100.0 32 ............................. TCCTAACCCTAATTGCGTGAAAATATATCGCC 26918 29 100.0 32 ............................. GGTTCTAATATTATTAGAGAGGGAAGTATTCC 26979 29 100.0 32 ............................. CTTCATTTTCTCTCTTTTTCAATGCTTTCAAA 27040 29 100.0 32 ............................. TTTTAAGAAAGAGAAAAAGAATTATAGTAGAA 27101 29 100.0 32 ............................. ATATTACCAAAACTAAAAATGATCCTATAGCA 27162 29 100.0 32 ............................. CAAACATCTATAACAGATGATTTTATAGACCC 27223 29 100.0 31 ............................. ATACTAATGAAAAAATGTATGAAATTATAGA 27283 29 100.0 32 ............................. ATTGAAGATGCAGCAATTATTCAAATAGAATT 27344 29 100.0 32 ............................. TATAGACTGAACACTTCTGCTCCAATAATACC 27405 29 100.0 32 ............................. GATGTGTGTCTTAAAACTCTTTCTATATTAAC 27466 29 100.0 32 ............................. CACCCAGATAGCGCATAATTTCATATCCCACC 27527 29 100.0 32 ............................. TATTGCGCCAGGAATAAAATGGTTAAATAAAA 27588 29 100.0 32 ............................. GGAATTAAATTTGAAAAAGTAATGACATTAGA 27649 29 100.0 32 ............................. ACAATATTTCACGACTATGGAGGAGACTTGAA 27710 29 100.0 32 ............................. GATTTTCCAAAAGCTGTAATTGGCATACAAAC 27771 29 100.0 32 ............................. GTAATAATATATAATAATTTTAATCAACAAAA 27832 29 100.0 32 ............................. AGGAAGATATTACAGATTTAGGAAATTACATA 27893 29 100.0 32 ............................. TTATTTGGGAAAAAACAGAATTAGGTGACAAA 27954 29 100.0 32 ............................. TCTTGATGAGGTTAATGAATTTATACGATATT 28015 29 100.0 32 ............................. CGGACTTATGAATCTAAATCTAACATAATTCA 28076 29 96.6 32 G............................ GAAGATATTACCTCCCTTATCGAAGTTTATTC 28137 29 93.1 0 G.........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ACACTAACTCCTCTATTTATGTATTTAATATTAAATACACATAAAAAATAATAAGTAAGGTGATAAAAGACAAAAAACAATTAATGTATCAATATTGTTTAAAGTGATGTGAAAAGAATGAAGTTTATCAGCTTAAAATACCAAAATTTTTTATCTTTAAAAAATATAACCGATTCTTCATTTCGGAAGAAAAAAAGACT # Right flank : GCCATTATAAAGTAATAACTTATTCAGATGATTAACGTTTCAGATAAACTCGAAAA # Questionable array : NO Score: 7.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:0.99, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4141-3704 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000736.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_12792_length_4206_cov_15.458203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 4141 30 100.0 36 .............................. TTTGCAATCTGGGCAAGAAGTTTGGCATATTTCTGA 4075 30 100.0 39 .............................. TTTCCTGAACTATCTCTAACTATAATAGTATAATTGAGA 4006 30 100.0 36 .............................. GATACAATCTTTATTCACATAAGCTGAGCCATGCTT 3940 30 96.7 38 ...............A.............. ATTAGGAGATAGAGATTTATGGCCTCTAAGTAAATTTT 3872 30 100.0 41 .............................. ATAAACATTGGAACCTTTTGTAAATTTTCCAAGCTTAACTC 3801 30 96.7 37 ..........................G... CTTTTGTTCTTTTCAGTTTTATCAACTCCTATTAGTT 3734 30 93.3 0 ............................GG | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 98.1 38 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : ACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACC # Right flank : CTGCTTTTATATCTTTAAGAGGAGGAAAGTAATTCTTTTTATTTTTATTAATATTTCTTTCTAAATTTACCATACTTGATAATTTAGAGGGTTCTATCAATTATACACCCATATCGTATCAGATTATGAGATATATTTAAATACGATGGTTACTTCAAGATTTATGAGGGTTTTTGAATATGACAATAAATAATTTGAAA # Questionable array : NO Score: 7.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.99, 7:0.74, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 13345-13613 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000124.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_1793_length_13630_cov_14.918527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13345 37 100.0 39 ..................................... CTATTAGAAACGCCTAAATCTCTTAATTGCTGTACTAAT 13421 37 100.0 40 ..................................... TTATCATAAACGCTATTTGAAATTCCCATAGTCCTTAAAT 13498 37 100.0 41 ..................................... TCTATAAATATATATGAATTTGTAAGTGTGAGCTTAATATC 13576 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 40 GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Left flank : AAGTAGGAATATCATTTTCATTTTTGTTTAAAAAAATATTTTAATTAAATTATCGCTTGGATGTAGCTTAAATCTTATCGCCTTATTTTAGTATTAATTTACCCTATCCTTCTCTGGAATTTTGTTTTAAAAGAAATTTTTATTAAGTTAACAAAAATTAAATATACTTTCTTTCCATATTATATTATATAGTAACTAGA # Right flank : TTGGATGATTAGGATAT # Questionable array : NO Score: 6.94 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.34, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGAAATTAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 11485-11670 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000163.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_2361_length_11687_cov_11.570581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 11485 38 100.0 35 ...................................... CCATCAGAAACATTAGATGAACCCACACCACTTAA 11558 38 100.0 36 ...................................... ATCGATTAGAAATAAACTTTTGATTTGCCATTTTTT 11632 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 40 AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TAAAAATTCAAAAGCGTTAAGATTCAAGTTCATGTCTAAAATACTAAAAATTAATATTATCTTCCTAAAATATTCTATTAAATTGTTACTTTCTATTTTTTAAATAAAAATAAATCTTAATTTAATCGATTAAAATATTTACTAAAAGATTGAAAAAAAATATATATTTGTTCCTACATTATTATAATATAATATATAAA # Right flank : TAGTCCAACCTAATGTA # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.29, 7:1.71, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 582-26 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010001266.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_26078_length_2666_cov_17.451551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 582 30 100.0 36 .............................. TATCACGAGATAAATTATTGAGTCAATTCTTAGCTC 516 30 100.0 36 .............................. TTTTTCTATATCTTCTGACATTTTACTCAATTCATT 450 30 100.0 36 .............................. TATATATATTCTACTTCTTCTTCTCTCCGTTTTAGT 384 30 100.0 36 .............................. GAAAGCTTTGATAACTGAAGGAATGTTTGGATATTT 318 30 100.0 38 .............................. TTTATTAATTTCACAGTCTTCGCCGTTTTTTGTTTCTT 250 30 100.0 35 .............................. TTTGAGATACTAGCAATTATAGCAACAGCTAACAC 185 30 100.0 35 .............................. TTTATATCTTGAACTATTTCCATAATTTTTCACTG 120 30 100.0 34 .............................. AAAGATTTTCATTGTATTCTATTTTATTAATTTC 56 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : CTTCAAAGCAACAAAATTTGTTGTGTAGGATGTTCTTTTGAAGAATATTGTTGGTTTGAATAAGCTAGCGATGAAAAGAAGAATGGAAACATTTAAATAGGTAGACTTCACATTTATAAATGAGTTAAGTTTCGACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAGGAGTACAGTACCT # Right flank : CGCTATTATTTCTGTTGTGTATTTTA # Questionable array : NO Score: 7.90 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 9912-12826 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000046.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_746_length_20974_cov_16.596300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================== ================== 9912 35 77.8 38 ...T..........C...A.....-.C.A..A..T. CGATGAGTCATGGTTATAAACACTTTACAAGGGGAGAA A [9938] 9986 35 97.2 38 ................-................... ACGACACAAACTTATTAATCAGCTATAAAGTCCTTAAC C [10001] 10060 36 91.7 39 ...........C......A.............T... TTTTGGCTACCGATATTCTCTTTCTTTGCTTTTCTGTTA 10135 36 100.0 38 .................................... GGGATACTTTAACCGAATCCGCTGATCCTTTAGAATTC 10209 36 97.2 37 .............................A...... GAATGTTAGTACCGACAGGGATTCTTTATTTATATAC 10283 36 97.2 38 ...........................C........ ATTATAATGCTACTTATTCTTTTACCAATGAATTAGAC 10357 36 97.2 38 ....................T............... GGGACACTACTTCTCATGATGGATTAGGATATGAAGTA 10431 36 86.1 38 ...............C.........TC.A..A.... TTAGATGGGGTACGGGACATCCTGTTATTCTCACAAAG 10505 36 100.0 40 .................................... TATGCTAGGGAAATTATTAATGAAAGTAAGAGATGAGCTC 10581 36 94.4 39 .........................T.A........ TTAATATCAGGCACTAAAAATTACAATAGAAGACAGTCC 10656 36 91.7 38 ........T................T.G........ TTAAATTCCAGTTATACGCTGGAACTGCGGGAACAGCC 10730 36 100.0 36 .................................... ATAGATCAAAGCTATGAAATAATAACCAATCTTGAA 10802 36 97.2 38 .......................T............ ATTCTACGAGATGGGCTTTAACAAGTACCGAAACGACC 10876 36 91.7 38 .............A...........T..A....... TTGTAAAGAGCAAGGTCAGAGATTATATTAAAAGTAAC 10950 36 88.9 41 ............GA...........T..A....... TAGGAGACAATCGCACATTCGATTACAACGATTCCTACACC 11027 36 91.7 39 .........................TC.A....... CATCTTGGTTGGCATTGTGCTGGTGATTTAGGTGGAGAA 11102 36 77.8 38 .............A....A.G....TC.A..AT... ATATATTTACTGTAGATCTACAGACAACTTCTTCTAAG 11176 36 88.9 38 .........................AC.A.A..... GTGCAGGGAGAAAATATCCCGCTGGAGATTATTGTCAA 11250 36 91.7 38 .............A...........T..A....... TTGGTTTTCAATATTCTAAAAGCGATGGAGCAGAAAAA 11324 36 97.2 39 .........G.......................... GGAAGCGGGTTCCAAATAGAGACCATCAAGGTCACTGGC 11399 36 94.4 79 .............A......T............... TGAGATTATTTACACTTAACAGAATTATCTTATTGCTATAGCAATACATAAGCAAATGTATCCCGCTACTTATATTTTC 11514 36 91.7 40 ..........T.........T..........A.... ATGAAAGCTGAGTTAGATTGTGAGCATAATGCGTCAGAAC 11590 36 86.1 37 ...A.........T...........TC.A....... AAAGAAAAGCTTATTTCGGAGTTCGTAGAGGATTTGA 11663 36 86.1 39 ........T....A........A..T..A....... GATTTATCAGTGTGTGTGTGGATATTTATTCTTTTCTGC 11738 36 100.0 38 .................................... GAATGTTAATACCGACAGGGATTCTTTATTTATATACC 11812 36 91.7 38 .............T...........A..A....... TTGAGACCCAGACAGTAATTAAAGCAGTCAAGCATGAA 11886 36 91.7 38 .........................TC.A....... ACGATTATTGGTTAACCCCAAGATAAGAAGATTGGTAA 11960 36 94.4 41 ...A............................T... CTGGTTATCATTATCCCCTAACTATAAGGAACGAAGAGGGC 12037 36 91.7 37 .............A.................TT... TCAGATACCGCTTATGACTCCTATTGAGCTAAATTTC 12110 36 97.2 39 ........................C........... GTAGAAAGTGTAACCGAATCATTGGACTTAACTCAATAC 12185 36 94.4 44 .............A..........A........... AAGATTATTGGACGGAAGCTAAGGATTTGACATTGAGAGTAAGC 12265 36 88.9 40 .............A...........T..A...T... ATTTTGCACTCCAACATTAGCAATGGGAGTTAATATACCC 12341 36 83.3 41 .............A.C.........TC.A...A... TTAAAGCTGACTTCACGAGAATAGACATAGGGGAATGGAAC 12418 36 88.9 39 ........T................TC.A....... CATACTGTTTATTTTGGGATATTTACTTATGATGGATTC 12493 36 86.1 36 ...........A..G.............T..AT... AAATATTCATCATAAGATCCCTGTGCATACATTAGT 12566 36 86.1 37 .............T..A........TC.A....... TAATGTAGAGGGAAATCAAAAAGGTATGGTACTACTA 12639 36 88.9 40 ............G............T..A....A.. TAACCAGATTTGGGACGTTCTATTCTATAACTCATGTGCC 12715 36 100.0 39 .................................... TTGGGAGATGTTCAACACGGGTATCAGGATTATAGCTTC 12790 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================================================== ================== 39 36 92.2 40 TTTCAAAACTCTAGTTGAGTATTATCTTGTTGCTAT # Left flank : ACCGATGTCGTGGAGAAGAGCGCTGTATAAAATATCGTAGTAATATGGATTTCTTTCCATATTATTTGGATTTTTCTCCATTATCTTTTGAAATTTCTTGACAATAATATCTTATTTAACTATATATGAAATTTCCTTTATTACAGCTTTTATAACTTATTATTTACTGATTATTAACTTTTTATTCTTTCCTTTCTTTC # Right flank : CCTAAAGAATTATTATTAAAAGCAAGTTTTACTTTAATAGTTGCTTTAATTATAAATTACCATTTTAAGGTTAAATATGTTTCGGATAAGAAGTTAATGCAGAATATATAGCAGTATCGAAACATTTTCTTAACTTGGAAAAAACCGCACATGAATTACATGTTAACTCTTTCATTTTAGAGAGTGAATTCTTTAATTTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:1, 7:0.34, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAAAACTCTAGTTGAGTATTATCTTGTTGCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6181-5919 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000065.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_952_length_18633_cov_16.836043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 6181 38 100.0 35 ...................................... TTTATATCCCTAATTATAATAATTTTTCTTTTTAA 6108 38 100.0 38 ...................................... TAAGAATTCTAAATACAGATTCGACATCACAGGGGAGT 6032 38 100.0 37 ...................................... CTCTTATTTCCCATTGAGCACCATAACATCTTCTAAA 5957 38 94.7 0 ................C...............T..... | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 98.7 37 GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAACT # Left flank : TATATAACTAATTTGAGCATTAATGGTGTGTAAAAATTACTAAAGGATGCTCGTAAATTTTATAAAACCTAATTAAATATATTTTAGAATTTAAAAAATGAATATTTTTAAATTTAAAAATACTAAATTTAATATAATATTAGCAGATACTCGATTTTAGGTATAAATGACCTGATAATTAGTATAAAAGAGTATGTAGA # Right flank : AGATTAAATAGAACAACATAAATCGACGTTAAAGACTTTAGAGACTATTAATAAAAGAATAAATGAAAATTCCATTAGTAAGGCTTATAAATGCTATCAAGATTTTAAGGGTAGCTGTATAGCAGCAGACAAAACTGCTAACGAAGTTTGTTTATATTACTTATAATCTTAACTGGAAAGGGTCTTTAAACTTCTAAAAG # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.29, 7:0.97, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 15612-15278 **** Predicted by CRISPRDetect 2.3 *** >JAHLWK010000065.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6Rcc_62 NODE_952_length_18633_cov_16.836043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15612 37 100.0 38 ..................................... TTTATTTCTTAAAAATCCTAAGTTGTAATAATAAACAT 15537 37 97.3 36 .....C............................... TCATAATCTTGATTTGTTGCTATTATTCCAAATAAA 15464 37 100.0 38 ..................................... GCAATTATTTCTATCTTGTCAATTGCGTCCATTATAGT 15389 37 100.0 37 ..................................... TTACTTACTACTATCAACTCGTAGTTATCTGTATGTC 15315 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 38 GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Left flank : AATATAGGTAATTCGAGCATTAATGGTGTGTAAAATTAAGAAGGGGATGCTCGCAAGTTTTATAAAACCTGATAAAATATATTTTAGAATTTAAAAAATGAATATTTTTAAATTTAAAAATACTAAATTTTGTATAATATTAGTAGATACTCGATTTTAGGTATAAATGACCTGATAATTAATATAAAAGAGTATGTAGC # Right flank : GATGTAACCTCATTATCGGAAATGGCGAGGGAGGTGACATAAATGCCAATAAATAATTTTGATGGAAAAACATTTATTGCATTTCTAGATATTTCAGGATTTAAACAACTAATGAAAGATGGAGAAAGAGCATGGGAAGTGTTAGATAGATTATATAATAATGGATACAAAGTACTTAAGGAAGTGAATAGTAAAGTTGA # Questionable array : NO Score: 7.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.90, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 42-225 **** Predicted by CRISPRDetect 2.3 *** >JAHLWH010000190.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6H3_1 k141_67284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 42 36 100.0 37 .................................... CTATAAGCTTTTATTTTAAACGATTCCAATCTTTTCT 115 36 97.2 38 ...................T................ TCTCCTATTTTATTGTTTAAAACTTAAAAATACTAAAA 189 35 80.6 0 ...TT......T..G.T....G..........-... | A [190] ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 92.6 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : AACAAATATCTACTGGCCCCACAGACATGGGCGATAATTACG # Right flank : AGGAAATTGGAATTATTATCGCAAGTTTATTGGCAAAAAAATTAAATAAAAGAAGAATGAAAAGTCCAAAATTTCTGTTTCTATTTCATTATCTTTATATTTTTTAGATGCAATCATATAATTCTTTATAGAATAATGGAAATATTTATAATTTGGATTTTGAGTATCAAGAGTATATCTCTTTAATAAGATAAATTGAT # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:1, 7:1.24, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 2505-2762 **** Predicted by CRISPRDetect 2.3 *** >JAHLWH010000190.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6H3_1 k141_67284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2505 37 100.0 36 ..................................... TTCAATACCCTCAATTGTATAGCAGACTACATTTTT 2578 37 100.0 36 ..................................... TTTTCAGATAATTCACATAGCACTCGTTGTAATGTA 2651 37 97.3 37 ....................................C TTAAAATTGCTATTTTGCTTTCTTAATGCGAATTGAT 2725 37 94.6 0 .....................T..............C | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 37 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Left flank : TTTTATTACTTTAAATTTATAATTGATCCTGTCAAAAAATTAAAAATATTGAAAGTTTATTTAATAATGTCGTAATTTTTTAATTTATTTTTATAAATAGCTTATTTCGAAAATCAAAAGAAAGCTCACACCATGAAAATTAGGCAAAGACGTAGAAAATCAAATATCTTTAAATACTAATATATTATAAAATAATATAG # Right flank : AACTAAAGAAAGACTGATGTCTAAAAAAAAAATAGAAGTCGGAAGAAAAATACATACATAAAGAAGTTGAAAAATGTCTAATGATTTAAAATATAATTAAG # Questionable array : NO Score: 7.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 6-489 **** Predicted by CRISPRDetect 2.3 *** >JAHLWH010000249.1-MAG: Candidatus Lokiarchaeota archaeon isolate 6H3_1 k141_91049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 100.0 38 .................................... CTTACATCCTGATACCCAGAATTTGCATACATCATTTA 80 36 100.0 39 .................................... CTTACTGGACATGGAATAGTGTGATCTTGAGAAATCAAA 155 36 97.2 40 ...............T.................... TCTGTAAAGATTGTCACTTTGTATTTTTCACTATCATCTG C [189] 231 36 100.0 39 .................................... GTACATCAGTAAAATGATTAGAGTTTTCAAATAAATCCT 306 35 83.3 39 ....T.........G.T....G...A......-... ACTTACATTTTTATGGATTAAAAATTATAAATTTTAGAT 380 35 80.6 37 A......T....A..AT.....T.....-....... TTAATCTTTTTACATATATATTTTAGTTTAATTGTAG G [406] 453 34 80.6 0 .......T....A..--..T....G...A....... | GT [476] ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 91.7 39 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Left flank : ATTTAG # Right flank : TTTTTTCTCTAATCTGTGTATTCATGAAATTACACTGATTATGTTTCTTAGAAGGTAGATTTTTTTTAATTGCATAAGTTTAAGAATAATCTTTTAAAAAAAGTAAATTGAATATCAGAAATTAAGAAAAAGGAAAGAATTTTTAATTAACCCATTGGCTTAAAATTGAATTTTCCTCTAAATTGTCCATTAATTCAATC # Questionable array : NO Score: 7.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:1, 7:0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 9453-8967 **** Predicted by CRISPRDetect 2.3 *** >JAHLWF010000351.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H5_17 k141_113334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 9453 39 97.4 34 ......................................A GAAAAATCTATTCCTACAAAGTAATGAATTGTTG 9380 39 94.9 35 ...............T..................T.... TAATATATTTTACAAATAATTTTAATAATTATTTT 9306 39 100.0 36 ....................................... TACTGGACATGGAATAGTGTGATCTTGAGAAATCAA 9231 39 94.9 37 A...............T...................... CTGTAAAGATTGTCACTTTGTATTTTTCACTATCATC 9155 39 97.4 36 .....................................G. ACATCAGTAAAATGATTAGAGTTTTCAAATAAATCC 9080 38 84.6 35 .....T.........G.T....G...A......-..... TACATTTTTATGGATTAAAAATTATAAATTTTAGA G [9044] 9006 38 79.5 0 .A......T....A..AT.....T....-........T. | A [8975] ========== ====== ====== ====== ======================================= ===================================== ================== 7 39 92.7 36 TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAACT # Left flank : TTT # Right flank : AATCTTTTTACATATATATTTTAGTTTAATTGTAGGTAGCAATAAAAATATTTATAGTAGGAAAATTGAAATTTTTTCTCTAATCTGTGTATTCATGAAATTACACTGATTATGTTTCTTAGAAGGTAGATTTTTTTTAATTGCATAAGTTTAAGAATAATCTTTTAAAAAAAGTAAATTGAATATCAGAAATTAAGAAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.93, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 2539-2722 **** Predicted by CRISPRDetect 2.3 *** >JAHLWF010000315.1-MAG: Candidatus Lokiarchaeota archaeon isolate 3H5_17 k141_99708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2539 37 100.0 36 ..................................... TTCAATACCCTCAATTGTATAGCAGACTACATTTTT 2612 37 100.0 36 ..................................... TTTTCAGATAATTCACATAGCACTCGTTGTAATGTA 2685 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Left flank : TTTTATTACTTTAAATTTATAATTGATCCTGTCAAAAAATTAAAAATATTGAAAGTTTATTTAATAATGTCGTAATTTTTTAATTTATTTTTATAAATAGCTTATTTCGAAAATCAAAAGAAAGCTCACACCATGAAAATTAGGCAAAGACGTAGAAAATCAAATATCTTTAAATACTAATATATTATAAAATAATATAG # Right flank : TAAAATTGC # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:2.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 262-3 **** Predicted by CRISPRDetect 2.3 *** >JAHLWE010000090.1-MAG: Candidatus Lokiarchaeota archaeon isolate 2R3_4 k141_19938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 262 38 97.4 35 G..................................... AATAGTATATTTGAAAGTCCTAGCTCTTGAAAGTC 189 38 100.0 36 ...................................... TTATTCTCTTCCATTTTCTTATCAAAACAAGAATAA 115 38 100.0 36 ...................................... GTGAAACGCCTCTAGGACGATCGCATCGTTCTGAGC 41 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 99.3 36 TGTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Left flank : TTTTTATTACTTTAAATTTTTAATTGATCTCCCCAAAAAATTAAAAATGTTAAAATTTTACTAGAAAATATCTTAATTTTTTAATTTTTTTCGATAAAAAGCTTATTTCGAAAATTCAAAGAAGATTTTCACTATATAAATCAAAGAAATAGATAAAAAATTAAATACTTTTAAATATAAATATATTCTAAAATAATATA # Right flank : GTT # Questionable array : NO Score: 7.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.29, 7:1.36, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 2 5297-4890 **** Predicted by CRISPRDetect 2.3 *** >JAHLWE010000090.1-MAG: Candidatus Lokiarchaeota archaeon isolate 2R3_4 k141_19938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5297 36 100.0 38 .................................... TGGTTTCATTTCTATTCCAACTCCTTGAGTAGTTTATT 5223 36 100.0 37 .................................... CATGATTTCTCCTTCCTTTCCGTCAGCAAAAGTCTTA 5150 36 91.7 40 ................A.....T.....C....... CTTTTGGTCACTATCGATACAGAATCTTGGCAAAATCTTA 5074 35 91.7 38 .......T........A.......-........... GTAATTGAAATTAACTTCTGAAGTTAGAAAAATATTAG C [5053] 5000 36 94.4 38 .......T..............T............. ATTATTATTTTATATTTGAAACTTAAAGCTGCTAAAAT 4926 35 72.2 0 A..TT......T..T.T..T.G......A...-... | G [4891] ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 91.7 38 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Left flank : TTGGCATAGGTTTCCGTTT # Right flank : GGAAATCAGAATTATTCTCTCAAGTTTATTGAGAAAAAATAAATTAAAAGTAGAGAGGAAAGTAAGAAATTATATTAATTAAACAGAAAAGAAAAATTTGAATAAGTTAAAAATCTTTTAAAAAGAGAATTTATGCTCAATAGAAGGTTTTTCATAAGAGTGATTAATACAAGAAAGTGTATTATTCATTGAAAGAGAAG # Questionable array : NO Score: 6.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:0, 6:1, 7:0.60, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1426-1857 **** Predicted by CRISPRDetect 2.3 *** >JAHLWE010000108.1-MAG: Candidatus Lokiarchaeota archaeon isolate 2R3_4 k141_22261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1426 28 86.7 37 .A....-...T............-...... GAAATATAGGGATTGAATGTTATATACGGCTTGTTGA 1491 30 96.7 39 ............T................. TCGCCTTTGCTATCCTCATCTTCGCCTCCATTTCATTCT 1560 30 100.0 36 .............................. ATTTTTGAAAGTGTTTCTTAATAACTCTTTCATTAA 1626 30 100.0 38 .............................. TCAAGGAAAATTGCAACCACTAACAAAGTGTGAGATGG 1694 30 93.3 36 ....C..........T.............. TCAGGGAAATAGGCGTTGATTAGCGAGAAGAAGAAG 1760 29 90.0 38 ....T.T..................-.... TCGTCATTACCACAGACAATCTCCACTTCTCTTGCCTC G [1788] 1828 29 86.7 0 .A..C...............G.....-... | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 93.3 38 CTTTGTAATTAACTAGAAATAGATTGAAAC # Left flank : TTTTATAAAAATATGGGATTTTTGTTCAAATCTAAATATATCCATTAATTATAATACAGAAATCAAGAATCCGAACCCGATAAGCCAATAATTCTTAATTGAATTAAAAAAAAGGAAAATAATTAATAATTTTAATCTGCAATTAAATCATATTTGTCAATTAATTCTAAAATGCCATAAACTGGCACACCATGATTATA # Right flank : AGATTAAAACTTCAGAGAAATTCAAAACTTTACATTTCTAATACTTAAATTTTTTAATTTTTCACTAAAAACATCTTAATTTAAAGTGTTGGGATTTCTTACTGAATCTATTTTCATTGGAATAAAAAAAGGGGGGATAAAGTGTTAGAGGTGCAAAAACTTAATCTTCTTCTCTTCTGTCTTAAGGAATTTTTGTAAAA # Questionable array : NO Score: 7.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.99, 7:0.80, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGTAATTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 17562-17371 **** Predicted by CRISPRDetect 2.3 *** >JAHLWE010000209.1-MAG: Candidatus Lokiarchaeota archaeon isolate 2R3_4 k141_45196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 17562 38 100.0 38 ...................................... GAGTGAAGTAATTTCAATAACAATCCAAGAAGTTTATA 17486 38 100.0 39 ...................................... AACTATTGCTGTTGCTACCTGAACTGCCGTTGCATCCGT 17409 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 3 38 100.0 39 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAACT # Left flank : | # Right flank : GGTAGAAATGAACAACACAATTAATGAAGTTCTTGAAAAACTGCATCAAAGAAGAGGACTTCCTCGTCTTGAAATAGAAGGATGTAATTATCCGATAAATAAAGATTTTATTGAAAGGTATAAAAAGTCTAAGGCATCAATGCCTGAGCATCATGAAGGATTTTCTGTCGTACATTTTGATGCGGAGAGAGGCTCGAATT # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.29, 7:0.76, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 32838-31813 **** Predicted by CRISPRDetect 2.3 *** >JAHLVZ010000021.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_15 NODE_354_length_32855_cov_19.514482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 32838 37 100.0 38 ..................................... CTAGCCATGAGTGCTTTTGCTAAGAACATCAAGTTTAA 32763 37 100.0 39 ..................................... AAATTACCGAAGAACCATTTCATTATTGCTTGTAATAAA 32687 37 100.0 39 ..................................... TTAATTGATACATGAAATAGCTATTAAGTTTTACTTTCT 32611 37 100.0 38 ..................................... GTTGTTTCGTAAAATGCTATTGTAGTAAAAACCATGTT 32536 37 100.0 40 ..................................... ATTTCAAACATTTTTGCCATAGTATCTAATTCTATGCGGA 32459 37 97.3 39 .....................A............... AAATGTGTTAGTATGTATTCTTCTATTGCTGAGATTAGT 32383 37 100.0 40 ..................................... GCAATCACATCGCATACTCCGTAAATGCAAACCTTTACTA 32306 37 91.9 40 A..GT................................ AGTGGAAAGTCTATATATCCCCCTGCATAAACCTCTTCAG 32229 37 97.3 38 ..A.................................. AATATTAAATCTTTGTCAACACTGATAGATGTTCCTAA 32154 37 100.0 37 ..................................... TTCTTGGCCTTCGACGTCTCGCTCTTCTGGGGTTTTA 32080 37 100.0 40 ..................................... GTATTTTACTGAACTGATGTACTCTCATATAAAACATATT 32003 37 100.0 39 ..................................... TCTTGATGGTATGGTTCACCTGTGCTAGCATCTGCTAAA 31927 37 100.0 40 ..................................... TATGAGTCATTATAACATCTATTAGCTGCATTACTTGTAG 31850 37 89.2 0 ...G................GC..A............ | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.3 39 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : TAAGAACATCAAGTTTA # Right flank : TGATTAAGCAAATATTGGAAATAACCTTTGATTATAGTGTAGATGTGAAAATCAAATTTCGCAAAAGTGTTTTGAGATGTTTTAATGAAAGATGCATCGTCTAAATAGGTTTTTTTCTTTTGTATGTGTAGAAGATCAATAAAGAGTTAAAAAAACATTCAACCAATTGTTATATATTCCTAAAGATTAAATCTAAAAAT # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:1, 7:0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 18-2505 **** Predicted by CRISPRDetect 2.3 *** >JAHLVY010000001.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_1 NODE_1_length_2258244_cov_106.862117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 40 ..................................... CAATTTACTACAAATATGGTTCAAGAATTTTTAAAATTCT 95 37 100.0 37 ..................................... CGAACTGCTTGTTCTCTGGTTGGGGAGTGATAATTAT 171 37 100.0 38 ..................................... TTACGAACAAAATTTGGTAATGTATTTTTTGATTTTAA 248 37 100.0 38 ..................................... CAATTTTCACAATCATAATACTCTGTTTTTATTGAATG 324 37 100.0 41 ..................................... GAGAAAAAAGAAGAACTACCTTCCCAGTATGGGGGAACGCC 402 37 100.0 39 ..................................... GAACAGTTGAGAGAATACTTCCACCAGTTCCAATTAAAA 478 37 100.0 40 ..................................... GTCTGCCAAGAATGTTTTGAATCAGAAGAGTGGAGACATG 555 37 100.0 39 ..................................... ACAATACGATTACTATCAGCTGCAGCTTTCTTTAAACTA 631 37 100.0 40 ..................................... TTTTTGAAACTGCTCTACTCATGCTTCCACCTCGAACATA 708 37 100.0 40 ..................................... GTGGTGATAAAAATGATTGATGGAAAAGTATCAGTAAATA 785 37 100.0 40 ..................................... GAAGATATGGACTACAAACAATTGCTTGAACTTGAAAAAA 862 37 100.0 39 ..................................... GAACAGTTGAGAGAATACTTCCACCAGTTCCAATTAAAA 938 37 100.0 40 ..................................... GTCTGCCAAGAATGTTTTGAATCAGAAGAGTGGAGACATG 1015 37 100.0 39 ..................................... ACAATACGATTACTATCAGCTGCAGCTTTCTTTAAACTA 1091 37 100.0 40 ..................................... TTTTTGAAACTGCTCTACTCATGCTTCCACCTCGAACATA 1168 37 100.0 40 ..................................... GTGGTGATAAAAATGATTGATGGAAAAGTATCAGTAAATA 1245 37 100.0 40 ..................................... GAAGATATGGACTACAAACAATTGCTTGAACTTGAAAAAA 1322 37 100.0 39 ..................................... AAACAAAAGTCAGTCGCGTGTCCTAGCGTTTTTTTACAT 1398 37 100.0 40 ..................................... ACTACCTTTTTGAAGAATGTCGGTTGGAAAATAGTTAAAA 1475 37 100.0 40 ..................................... GCAATCTGTGCTTACATAACTTCTTATGCAAGAGTTAATC 1552 37 100.0 41 ..................................... TTCGGGTGGTTTTCACAATGAGTGAATTGTCAACTTATCAA 1630 37 100.0 39 ..................................... TCTCTAATAGAAGATATGAATAATGAAAATGCTGAAAAA 1706 37 100.0 39 ..................................... AAATGCCCAAAGTAAAATAAAAGGTATTATCATACCAAA 1782 37 100.0 39 ..................................... ACAAACTTTCTTATCCTCAATCTTATCGTAACAAGCTTC 1858 37 100.0 37 ..................................... TAAGAACCATCAAATAATCCATAGTCTCTTACCCATT 1932 37 100.0 39 ..................................... ACCGATATTGAATTTTTTGAATATGAAGAAATGATATTA 2008 37 100.0 42 ..................................... ATCACAAAAAAAAGTCTATGAATATTAATCAAAAATCTAAAT 2087 37 100.0 38 ..................................... AAAAATCGGCAAATTAATTGAAACCTTAAAGGGTTTAG 2162 37 100.0 40 ..................................... ATTAAAAACGTTTTAGGTATGCCTATGAAAATTTTTGAAA 2239 37 100.0 41 ..................................... ATAAGTTCCGTGTAGAGCCAACGATAGGATTTGAGGAGGAT 2317 37 100.0 38 ..................................... ATAATAATAATGATAATGATTATTATACACTCTGTGTA 2392 37 100.0 39 ..................................... AGAATGAACTTCAAAAGAAAGTAAATTAGGTAAAAATGG 2468 37 94.6 0 .........................A........T.. | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.8 39 GTTGCAAAGAACAAAGCTCGATTACGAGTATTGAAAT # Left flank : AGAATTTTTAAAATTCTG # Right flank : TGTTAACGAGTGGTTTACATGCTTAAAGGCGAAAGTTGAAAAAATTCAACAGGATTTAAGACTGAAAAAGTCTATTCTAACACCCAATACTCTGCTATTCCTTTCTGTTTCTAACTTGAAGTCTTCTTCCTCTGTAGCTCATTTAGTTTCACTACTACTTCTGGTTATAATTCGTTCTTCACTAAATGGGTATGGGGTTC # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGAACAAAGCTCGATTACGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 1801922-1813000 **** Predicted by CRISPRDetect 2.3 *** >JAHLVY010000001.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_1 NODE_1_length_2258244_cov_106.862117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1801922 30 100.0 38 .............................. GAAATAATCCTTCTAAATACCACAGTTCCAATTTATAA 1801990 30 100.0 38 .............................. TTATTTTCTCTTCTGCTTTCAGATCATCTTTTAGTAAA 1802058 30 100.0 39 .............................. GAAGCATATGCAAAAGGATCAGGACTCGAGATGATCATA 1802127 30 100.0 36 .............................. GTTACTAAAGTAATAGAACTAATGCAATATCGAAAT 1802193 30 100.0 37 .............................. TCATTAGACAGATTAGTTGTGCAATTGACACGCTAAA 1802260 30 100.0 36 .............................. TAACTATTGTCAGATAAAAGTTGCTATTTGAGGAAG 1802326 30 100.0 37 .............................. TTTTCTATTGCTTGGAGATCTCCTCCAAGTCCGATAA 1802393 30 100.0 36 .............................. CTTACTACTACTAGCAATAAACATTCGATATCAAGT 1802459 30 100.0 36 .............................. ATTGGCTACAACACTTGTAGAAATTCTAGGATCAGA 1802525 30 100.0 37 .............................. TTGATCCTAAAGCACATCCTTGATTGAGGGGTTTTTT 1802592 30 100.0 37 .............................. TTAACTTTTTCTGATCTCAAACTAATTTCAGCCCAAT 1802659 30 100.0 36 .............................. GTAGGAACATTAACGGCAAATACAAATGTAATTGGT 1802725 30 100.0 38 .............................. AGAGAATACCCACTGGGAATTTTTCAAAAAAAAATAGG 1802793 30 100.0 37 .............................. CTAGGAGTGCAAACTTCAAATTCATCCATGTAAGAAA 1802860 30 100.0 36 .............................. GAAGAACATTTAACACAGTAGCAACTAAGACAGGGA 1802926 30 100.0 36 .............................. ATTTCTGAGGTAGATCAAGATGGTAGAAAACAATGA 1802992 30 100.0 36 .............................. CTACAAGAACAAATAGATTCTCTAATACAAAAATTC 1803058 30 100.0 37 .............................. ATTGATGTTCTCCAGAGGCTAGGCTATACTAAAGATT 1803125 30 100.0 36 .............................. TCAACTGTTTCTTGTTTATTGAATAGATTATTAGAA 1803191 30 100.0 36 .............................. CTTACATAAGCGATTGTGATGTAGTCGGCTCGAATA 1803257 30 100.0 36 .............................. CAAGCAACAATAGAAGAAACTCGAGAATGTGTAGTT 1803323 30 100.0 38 .............................. AATTTACCCCAGTTATAACACTAATGGATAGAGTAGCA 1803391 30 100.0 45 .............................. CGCATAACTGGCTCCCATTCGGGTGCATACCCAAAAGTTTTCAAT 1803466 30 100.0 37 .............................. GAGAATGATCGTTTATTGTTTGAAAAAATGTATTCAG 1803533 30 100.0 36 .............................. CAACGAGCAAAAGAAAAATATGAATCGAAACACCAA 1803599 30 100.0 37 .............................. CTGTTAGAGGTATTCATTTTGTATCAAAAGCTAATGA 1803666 30 100.0 35 .............................. CCTGTTGCTGGATTTGTTGTTGATTCTGTAAGTGA 1803731 30 100.0 36 .............................. ATTTATTGAACGTGCTAACTCAGTAATAACATCCTC 1803797 30 100.0 36 .............................. CCTGGAAGAACATTAGGCAAAATGCTCGAGAGTGTT 1803863 30 100.0 37 .............................. TAGGATTAATGCCTCTGTAATAAGCTATTGCTTTTGC 1803930 30 100.0 37 .............................. TCAGATTCAGTTTCAACATGCATTAAGAAAGGGTATT 1803997 30 100.0 36 .............................. TTGCAATAAAGTAAATTTGCAACCGCAACAACCTAG 1804063 30 100.0 36 .............................. AAGCATAGTAGGATTTTTGTAACTAATTGCTGTTAA 1804129 30 100.0 36 .............................. CCTTTAAATTTGCTGAGATAATTGCTATGATAAAAG 1804195 30 100.0 37 .............................. TTTTTTTACCCCTTCTAAAAGATTTAAAAAAGAAGAA 1804262 30 100.0 36 .............................. GTTGTTTAATTTTATTTTTATATTCTTCAGTAAAAG 1804328 30 100.0 36 .............................. TATTCATAAAGGTTCTACTCCTTATATGAGAATATA 1804394 30 100.0 38 .............................. TTTTTACAATAATATTTCGTATCCAAATAATCAGTCAA 1804462 30 100.0 37 .............................. TAATTTGTTTTAATAAATATCTAATTATTTAGTTAAA 1804529 30 100.0 36 .............................. TTTACAAATGTCTAACATGTAAAAACACTATAGAAT 1804595 30 100.0 37 .............................. GTTTGTTTACTAGTAAAAGAAAAGGTGATTAATTAAA 1804662 30 100.0 42 .............................. AATACTTTTCGATAAGGAAAAAGTAGTAAAAAAAGAGATAAA 1804734 30 100.0 36 .............................. ATTTGTAATTGGTCAATAACCTTATCACAAACCTCA 1804800 30 100.0 37 .............................. TTGAACCAAGTGGTATTTTTCCAATTAATCGTTTAGT 1804867 30 100.0 36 .............................. GAAAAAGACCAACAATGTTCTACCTGCAAAAAAAAA 1804933 30 100.0 36 .............................. TTGATTTGCAATTCAGTTTTCGGATTTTTTTGTTTT 1804999 30 100.0 36 .............................. TTGGTTTACTCGCTTTTCCAATACTGCGTTCGATTT 1805065 30 100.0 38 .............................. AATGTTAAAGTTTTAAATTATGCTATTTCTAATCGAAT 1805133 30 100.0 39 .............................. GTTGATGTTGATTTTGAAACTGGTCAATGGAAAAACGAT 1805202 30 100.0 38 .............................. TCTCGAGTGAAACAAGTTCCTCCCAGAGTTGTTGTTCA 1805270 30 100.0 37 .............................. TTGATCGAGGGGCAACAACTAGCACAGTCGAAGTATA 1805337 30 100.0 37 .............................. TAACATGAGATTATACCGCCCTACTATTCCTCGAGAG 1805404 30 100.0 37 .............................. TCTGTGAATTTAGTCATGATAATCACCGTGAAGTATA 1805471 30 100.0 37 .............................. CTTATCGCAGGTAAAGAATGTGACTGTTGACCCACAA 1805538 30 100.0 37 .............................. GTCGATTCAATCCCAATTGACGAACCTTTTCTTATTA 1805605 30 100.0 36 .............................. TAATAATTGCGAAAATTGATTTAATTATAATACTAG 1805671 30 100.0 35 .............................. TCTTTAAATCTCGACCATTGAATCGGATCAGTAAT 1805736 30 100.0 37 .............................. TTTTTTATCATTTCTAAAAAAGAGTAAAAAGAAAGTA 1805803 30 100.0 37 .............................. ATAAATAACCATTGGGAGTTCCCAATAGATGTAACTA 1805870 30 100.0 37 .............................. TATTCTGAAGGATTAATCACAGAAAAAGAAGTTTACG 1805937 30 100.0 38 .............................. TAATCATTGCTTTCGTTAAATCTCTCTCGGCCGGTAGT 1806005 30 100.0 44 .............................. GAGTCAAAAAAGGAGTTCAAGAAATTGTCTCTGGAGATGAAACG 1806079 30 100.0 40 .............................. GTTGATAATGAAGTTTTAATAGCAACTATAGCAAATCAAT 1806149 30 100.0 36 .............................. TTAGTAAAACAGCAGAAAAAACAACGTTAGCACTAA 1806215 30 100.0 35 .............................. CATTCATACTAATCAGAGTGTCATTAATCTTGAAA 1806280 30 100.0 36 .............................. AATGCTTCAGCAAAAGGATACAGTTCATTTGCCCAA 1806346 30 100.0 37 .............................. ATTTTCTTAATAAGAGGAATCATCCAGGGTCTAATAT 1806413 30 100.0 40 .............................. ATAGTAAAGAAGGAGCCACGTTTAATATGCTCCGAATTGG 1806483 30 100.0 39 .............................. TGTCATACTATCACGAAGGCTATGAGGATGCAATAAAAG 1806552 30 100.0 37 .............................. AGAGTTCTAAAAAGCTCGATAGCGAAGATGATGTAGA 1806619 30 100.0 36 .............................. GTTGCCGGCGTCCCAAAAAAACTCAAGATATCTCGC 1806685 30 100.0 37 .............................. AAAGGATCATCATCATCTTCCTCATAATCTTCTTTAA 1806752 30 100.0 36 .............................. TTTGCTGACATTCTGAACAAGTCCAAGTGATTAACT 1806818 30 100.0 36 .............................. TTATGTACCTCTTGGAGAATCTTCTATTGTTGCTGA 1806884 30 100.0 36 .............................. ATGATAAATAAAATCTTTATTTTGCAGGTATGCTTA 1806950 30 100.0 36 .............................. GTTTTACTGGTAAATTTACTGCTGAAGTTTTTATTA 1807016 30 100.0 37 .............................. TTCATCACATCAAAAAAGTTAAAGAAAATTCTGAAGG 1807083 30 100.0 36 .............................. ATAACTCAAATAACTGTTACTGAACCAAGTTTAATT 1807149 30 100.0 36 .............................. GATGAAACTGACAAACAAATACATAATGAATTAACT 1807215 30 100.0 36 .............................. TTATTTCTAGTCTCCCGTAACTCTTGAGTAATTGAA 1807281 30 100.0 38 .............................. CATGATTATTCTAATGATTTTTTACAAGCAGATATAAT 1807349 30 100.0 36 .............................. TAAGCCAAAAAATAGGATTAAAAAATAAGGAACAAC 1807415 30 100.0 37 .............................. ATTATTCTGAAAAAAGAATAATATTTGTAACAACTTT 1807482 30 100.0 36 .............................. GCACTTTCAGATCTTCTTCTAGTTTAGTTAATCTCT 1807548 30 100.0 39 .............................. CTTTTTGATATAACCTTTCTCAAGTTACTATACCAAGAA 1807617 30 100.0 36 .............................. TAAAGTGAAGCTGTTTCATTTATGAGTGAATCAACT 1807683 30 100.0 36 .............................. TTTTACTGGTAAATTTACTGCTGAAGTTTTTGTTAA 1807749 30 100.0 38 .............................. GTTTTTTTGAAAGGATTTAAAAAAGAAAAAATAAAAGA 1807817 30 100.0 36 .............................. CCTTGTAGTAAAAATTTAATCCTTGATTTTAAAAAA 1807883 30 100.0 36 .............................. AAACTAGTGTCATTGTCAGCAACTGCGATACCTTTT 1807949 30 100.0 37 .............................. GTACTGGCAACAAAAACCGGTCGAGCAGCAAGAACGA 1808016 30 100.0 37 .............................. TTGATAATACTTGATTCATAAACAGTATCATTTTTAT 1808083 30 100.0 36 .............................. TTTCTTGGGACGGATATAATAATCCAGAAGTAATAA 1808149 30 100.0 36 .............................. TTGGATTAGTTGGACTGAACATAATGTCATTTCTAA 1808215 30 100.0 36 .............................. TTTCTTGGGACGGATATAATAATCCAGAAGTAATAA 1808281 30 100.0 37 .............................. TGAATTGTTCTTCTAGTGTTTCAAGTGGAAATAATTA 1808348 30 100.0 39 .............................. GTTGTTGCTCTTTCATCTATACAGTCAAAAACTTCAGAA 1808417 30 100.0 36 .............................. TTTTAACACTTGGTTAATTGTTCTTAAAAGAACTGC 1808483 30 100.0 36 .............................. GAGTCTGGACTGAGAATAATCGTTTTGGCGATTATG 1808549 30 100.0 37 .............................. TTAGATGGGACTTATAATGTTACTTGTGTTCCAGCAG 1808616 30 100.0 36 .............................. GAGTTCCGGTCGTTGGGGAAATTGTGCATGTTGAAA 1808682 30 100.0 36 .............................. GAAGTTTGTGATTGCGACCATATTTGTTTTGAGATA 1808748 30 100.0 36 .............................. ATTTCTTTGACTGTATCTTCATGCTTTTCTAGTTCA 1808814 30 100.0 37 .............................. AAAGAAGTTATGAAAGCGAGTAAGCTAAAAGTTAAAG 1808881 30 100.0 37 .............................. GTTTTTAAAGTAACACGTTATACTTCAGAAACTAAAG 1808948 30 100.0 37 .............................. TTTGAAAGTGATAGATAAATGAATATACCAAAAAATC 1809015 30 100.0 38 .............................. TGAAATGATTGGTAAAATTACCAATCAGTAAATACGTC 1809083 30 100.0 36 .............................. TTTAGACGCTTGTATTGTTTATGTATCTGACAATAA 1809149 30 100.0 38 .............................. TTTATCCAATGCTGCACAGGCTGGCAAAACAGCACAGA 1809217 30 100.0 36 .............................. TCTTCTCAGCGAAGCAGGTTCAGCACACAGTCATGC 1809283 30 100.0 36 .............................. GATATTACAAAAAACATTGGCACTTAGTAAATTTCA 1809349 30 100.0 37 .............................. CTTTTTGCAAAATCTCTAATAATATTTCCAATTAAAG 1809416 30 100.0 36 .............................. CATTCTGGACAAATTTTACCTTTAAAATATCTTCCA 1809482 30 100.0 38 .............................. AAAATTGCGACATTCTATAAGTTTCACTTAACATTGAT 1809550 30 100.0 36 .............................. TCTCTAAAAACAAGTTCAATACACCCATCAATAGAA 1809616 30 100.0 36 .............................. CAAGTATAAGCAATAGTAAGATTATTTAGTATTGTT 1809682 30 100.0 35 .............................. ATAGTAAAATGAATCGACTAGATCTATACGAAAAA 1809747 30 100.0 36 .............................. TTGTTATTGCAATAATAATAACTTTAGTGATTCTAA 1809813 30 100.0 37 .............................. GGTATTACCTTTTTCTCTTTTTTAATAATTGGTAAAA 1809880 30 100.0 37 .............................. ACTGATAAATATGTTCAACTTAGCGGAGAAGATGGAA 1809947 30 100.0 36 .............................. CTAGCAATCTTTTCCTTGGTGGCTTGCAAGCAAACA 1810013 30 100.0 37 .............................. TTAATCCTACTAAATTAATCCCTAAAAAAAGTCGTGA 1810080 30 100.0 36 .............................. TTGAGATAATCGAAAGAAAACTAGACATGCTTCAAC 1810146 30 100.0 36 .............................. TTGGCAAGATGTAGATGATGGCATAGAAGCCTAATT 1810212 30 100.0 36 .............................. CTGGGAAAATATTTCAAATGCTTTTAAGAATGTTAA 1810278 30 100.0 36 .............................. GCATAATTGGGGGCAGAGATAATCCTCTAATTTCAA 1810344 30 100.0 37 .............................. TATTTATGAACATTAAGTATGATATTGCTAATATATC 1810411 30 100.0 36 .............................. TGGGATTACTTAATGCATGTCAAGGACTTTATAAAT 1810477 30 100.0 37 .............................. TATGTTAATTTAGTTGTCATTTTTTCTGTCAATCCTT 1810544 30 100.0 37 .............................. TCAGCTATCTTTGTAGAATATCCCAAATTTTCATATC 1810611 30 100.0 38 .............................. TTTATTGTTGGAATAGGAACATATATCTGTATAAGAGA 1810679 30 100.0 45 .............................. CAAGCCATAGAAAATAAGATACAATTTCAAGAGTTATGGCAGCAA 1810754 30 100.0 38 .............................. ATAGTACTTCTGATTGGTCTGAAGGGGAAACAGTAACA 1810822 30 100.0 36 .............................. CAGATATCTCGCTACTATAAGGATGTAATTGACATG 1810888 30 100.0 36 .............................. CTAACCTGCTCGTGTGTGTGCCCGCTGGCAAGCAAT 1810954 30 100.0 38 .............................. TTTTTAAATTCTTCAGTAAAAGCAAAACCATAGCAATA 1811022 30 100.0 37 .............................. TTTTATTACAATTGTTACAATGATAAAAAAGAATATC 1811089 30 100.0 38 .............................. GTTGATAAAAAAGGTGAAAAAAGACTTAATAAAACTAA 1811157 30 100.0 37 .............................. TGAGCAAAAATATAATTAAGTCTTTTTTCAGCGAATT 1811224 30 100.0 37 .............................. TTAACTAGCATTTCTTCAACGTGCTTTATTGTTGCTT 1811291 30 100.0 37 .............................. TCTTTTATGATAACGACTAATATCAAATAACTAGAAG 1811358 30 100.0 37 .............................. TTTATTGTGGAGTAATAGCTTTAGCTGTGTTATTTGG 1811425 30 100.0 38 .............................. TAATTTTTACCAGGCATAGCTGCAAACCAATGTTTAAA 1811493 30 100.0 37 .............................. CCAGTTAGTAAGAAAATACTATGATTATTATAATAAT 1811560 30 100.0 36 .............................. GATGTAAAATACCTAAAAGCTTTATGGTTTGGTGAG 1811626 30 100.0 37 .............................. TTCTCTTTGAGATCATAAGCTAGGGCTTTTGTAAATA 1811693 30 100.0 41 .............................. GTTACTAGTGGGATATGGTGAATGAAGATTTCTCGTTTTAA 1811764 30 100.0 37 .............................. CTTATCACGAATTACCTAAATTTTCGACTGCGGCTGA 1811831 30 100.0 36 .............................. CTGGTTTGTTATAAACCATTTCGCACCTCCCACCAA 1811897 30 100.0 36 .............................. CTTATTTGGAACACCTAGTTGACTATGATAAGAAGG 1811963 30 100.0 36 .............................. GAAAAATGTGTCAAGAAAATATATGAAATGATAATA 1812029 30 100.0 37 .............................. TTTGTTAATCCTGCTCTTAATGAACCTCTAATAGAAT 1812096 30 100.0 36 .............................. TATGCTAATGTTACTGGTGGAAGTGTTGATGTTTCA 1812162 30 100.0 37 .............................. CAAGGTGAAAAACAAATGGCAGAATTAAAAGTAGATT 1812229 30 100.0 40 .............................. AGGGTTGTGTTGTTAATGTTTAGAAGAAGATACTATAACC 1812299 30 100.0 36 .............................. TCGGTATGCAAGTAATAACAGCAACAGTTGTCCATG 1812365 30 100.0 36 .............................. TATGTACTTTACATGAGAAAAGAAATTAAACAAGAA 1812431 30 100.0 36 .............................. TGTTATTTCACGTGTTGATTCACAGCATATATTATC 1812497 30 100.0 37 .............................. TTTATTGTCAATGACTTTTATTCCAATTTTAACCTTT 1812564 30 100.0 36 .............................. GTATATGAAACTAACCGAACAATAGCAAATTATAAA 1812630 30 100.0 37 .............................. CAATTTTGCTAAAGATGATATTCTAGTAGAGGGTATA 1812697 30 100.0 37 .............................. TAATTATACTGTTAATTATTTTACTAATATTCAAGTT 1812764 30 100.0 37 .............................. GTTATTGAAAAAGTAGTAACTCATAAAAATGATAATA 1812831 30 100.0 37 .............................. CTATCTTCCACAGCACTAGGGATCATAATTTCAATTC 1812898 30 100.0 42 .............................. TTTGGATAAGAAATATTATTGTAAAAATAAATGTTTCTTAAA 1812970 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 166 30 100.0 37 GTTTGAATCGTACTATTGTAGTATTGAAAT # Left flank : CTATAATTATATATAGAATTAAAAGTAATAAATTTGTTGACAAAGTTCTAATTGGATTAGAAAAGGGCAAAGATGACCGTTTTATTTAAATTATGTCGATGTTTATAAAGTATAGTGTCTATTGCAGGTCGACCGGATGATAGTTCTAAAAGAAGGCAGAAGAATGCTTGAAATAGGCAAAAACGACCGCTATAATACGT # Right flank : TAGAATGATGATGTACAGCAGTTTGTTTTAAAAGGTCCTTATGTAAAATCAGCTATGGTTGCTAATTGTTTTGGATATGATCGTCGTAGAATAACATTATTCGGTGATGGTGATCCATTAGCTGAATTTGATAATTTGTTTAAATACAAGGATGATTTGTTTTTTGTTGCAATCACACTCACTACAAAAAGAGAAAATAT # Questionable array : NO Score: 10.79 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGTACTATTGTAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 1968302-1968795 **** Predicted by CRISPRDetect 2.3 *** >JAHLVY010000001.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_1 NODE_1_length_2258244_cov_106.862117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1968302 37 100.0 38 ..................................... TATCAACCATCTAACTGTATCAGTATTATTTTCAAAAC 1968377 37 100.0 40 ..................................... TCATCATTGCCTTCTTCTATTATTATTGGATTCATAGGTA 1968454 37 100.0 41 ..................................... GTATTGTTTAGTAATCTCATCGGGCATATTTGCTTGTTGAA 1968532 37 100.0 38 ..................................... ACACGATTAATTTTACTACCACGACCAAAATGAACTTT 1968607 37 100.0 38 ..................................... TTCCATCGTTTGCCTCTGCTTATGCAAGAATAAAAATT 1968682 37 100.0 39 ..................................... GAATGTGGACAACAATATGATTAGTTTTTTTCCAAAATT 1968758 37 97.3 0 ........................A............ | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 99.6 39 GTTGCAAAAGTAAAAGCTCAATTATGAGTATTGAAAT # Left flank : TTTTGTGATAGTATTTTGCTTTCTTGCTTAATTTTCTCCCCATTTTAAGCTCTTTTTTGTTCTAAAGGTTGTCGAGTGTTGGTACGTACTATTTAAAGTCTTTCCTTGACATGAGACCCGCCAGCTTTGAGTTGAAAAGAAACCTTCTCCTACCTTCTTTTTGTTATTCTTTCTTCAAAATCTGTCGAGTCTTTTTAAAG # Right flank : CATGTCCAATTTAAACAAGAATAATAAAGTGCAGAAAATAAAGCAATAAAGATACTTTTTTTTAATTACAATAAATAAAATCTGTGCAAATATCTTTATGAATACGAGTCTTTATAAGATATAATAATTATTAGTTTATGCTCGTGTGGGAAAGAAAAATGACTAATAAATTTATTCGAGCATCCATGGTGATACTTGCA # Questionable array : NO Score: 7.39 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTAAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 1995327-1995747 **** Predicted by CRISPRDetect 2.3 *** >JAHLVY010000001.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_1 NODE_1_length_2258244_cov_106.862117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1995327 37 100.0 41 ..................................... TATTTTTCGACCATTTCTTTTTCAAATACTTCTTTTGCTGT 1995405 37 100.0 38 ..................................... GCAAGATCTGTTAGCTACCGATTCACTCGGGTTTCATT 1995480 37 100.0 38 ..................................... AATGTTAATGATAGTTGCAAAGTTCCATGCTTTGCAGC 1995555 37 100.0 39 ..................................... TATCATATATCCATAATTGCTAATTAAATAGCTTTAAAT 1995631 37 97.3 42 ........................A............ TATACTTTGCCGCAGTCCAAATCATAGCGCTGGAATACTCAA 1995710 36 91.9 0 ...G......-.............A............ | A [1995722] ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 98.2 40 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : TTGCTGATCATGACACCCGCCAAGATTGCTCTGAAAAGCAGTAAGGAGAAACCTTCTTTTTGTTCTTTTTCTTTCTAAAACTGTCGGGTCTTTTTAAAGTCTGTACCACTTTGGTTACCCACCAACTTCACCCTTAGAAAAATCCTTCTAGGCGCGTGAGGGCAACATTTTTAGCATCTAGACGTCTAAGAGCTGTCAGT # Right flank : GGATACTTGATGATAGGTTGTTATCATATTTACACGTAAGTTTGAAAGTCAACATATTGACTTGCATTACTAAATGCACCACTAGGTGCAATTAGTTCTTTTTTCTTCTAAATTTACCAACAGAAGAATTACTTTTTGACCATCGATTTTTCTATCTGATAAAAAATAGTTATTTCTTTAAGTTTGAAAACCAATATATT # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:1, 7:0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 134193-135299 **** Predicted by CRISPRDetect 2.3 *** >JAHLVY010000006.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12R2_1 NODE_32_length_135316_cov_104.476028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 134193 37 100.0 40 ..................................... CTCTAGCCCAGGTTTATACTTGTATGAATTAGCAGTTTTT 134270 37 100.0 40 ..................................... TTAAATGAGAGAGTTCCTGATAGTGCTTATAGTTATTTAT 134347 37 100.0 37 ..................................... AAAATTTGGTTTATCTCCATCCTTGAAAAACTATTTT 134421 37 100.0 39 ..................................... AATCGAAGTGCTAGTTAGACAAGCAATCTTTCTTACTAA 134497 37 100.0 41 ..................................... TAAGTAAACCATTTGTGTACACCTATACTGGTTCCATCGTC 134575 37 100.0 38 ..................................... AGAACCATCTGCTCCTGTTAATCCACTATCGACATACT 134650 37 100.0 40 ..................................... TTAATAGTTCAACGAGGATTTGTATTATTTGATCTTCCAA 134727 37 100.0 39 ..................................... TTCGTTGCACTTTTGACTGTTACTGACAGATGTTGTAAA 134803 37 100.0 40 ..................................... TGACAGAATAATCGACATTAGCCCACATACGATTGAACAT 134880 37 100.0 40 ..................................... AAACTATATGCATAAATGGCCTATTATAAGGCCTCTTCAT 134957 37 100.0 40 ..................................... TTATAATGCAAGTAAGTGCTAATGAACCAAAAATGCCCAT 135034 37 100.0 38 ..................................... AAATAAGAGCCTAGGCACTTTGGCTGGTTAGGTTCAAG 135109 37 100.0 38 ..................................... CCAATACCAGCAATTGCAGCTAGTAAAAATGAAACTAG 135184 37 100.0 41 ..................................... AATGAATTACACCAATCGCTACTTGAAGCTTGGGAAGAAAA 135262 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 100.0 39 GTTGCAAAGAACAAAGCTCGATTACGAGTATTGAAAT # Left flank : CTTCGCACTTAAGGAGACCCGACAGCTTTGACTTGAAAAGAAGGTGGAAGAAGACTTCTTTTAGCTCTTTTTAGCTTAAAATCTGTCGGTTCTTTTTAAATACTGTACCACTTTAGGTACCCGACAGGTGGTGTGCTCGAAATCTTTATCTAGAACGGAGAGAATAGCTTTTTTACCATCTAGGCGCTTGTAGAGCGTCA # Right flank : AATTTACTACAAATATG # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGAACAAAGCTCGATTACGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 16632-16000 **** Predicted by CRISPRDetect 2.3 *** >JAHLVV010000015.1-MAG: Candidatus Lokiarchaeota archaeon isolate 12F4_17 k141_3581, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16632 36 97.2 39 ...T................................ ACCACTTGAACCAGAATGATTACTATACCGATTAATGTC 16557 36 97.2 38 ..........C......................... CTTTGTGTATTTTGCCATTTTTCATCAGTTTTATTATT 16483 36 100.0 38 .................................... CTTACATCCTGATACCCAGAATTTGCATACATCATTTA 16409 36 100.0 39 .................................... CTAAATGTACATGGAAAATAGTGATCTTGAGAAATCAAA 16334 36 97.2 40 ...............T.................... CTCTGTAAAGATTGTCACTTTGTATTTTTCACTATCATCT 16258 36 100.0 39 .................................... GTACATCAGTAAAATGATTAGAGTTTTCAAATAAATCCT 16183 35 83.3 38 ....T.........G.T....G...A......-... CTTACATTTTTATGGATTAAAAATTATAAATTTTAGAT G [16148] 16109 35 80.6 37 A......T....A..AT.....T....-........ TTAATCTTTTTACATATATATTTTAGTTTAATTGTAG A [16079] 16036 34 80.6 0 .......T....A..--..T....G...A....... | TG [16013] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 92.9 39 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Left flank : TTA # Right flank : TTTTTTCTCTAATCTGTGTATTCATGAAATTACACTGATTATGTTTCTTAGAAGGTAGATTTTTTTTAATTGCATAAGTTTAAGAATAATCTTTTAAAAAAAGTAAATTGAATATCAGAAATTAAGAAAAAGGAAAGAATTTTTAATTAACCCATTGGCTTAAAATTGAATTTTCCTCTAAATTGTCCATTAATTCAATC # Questionable array : NO Score: 6.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:1, 7:0.42, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 2576-3349 **** Predicted by CRISPRDetect 2.3 *** >JAHLVV010000285.1-MAG: Candidatus Lokiarchaeota archaeon isolate 12F4_17 k141_67290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2576 36 100.0 37 .................................... GTTCAATACCCTCAATTGTATAGCAGACTACATTTTT 2649 36 100.0 37 .................................... GTTTTCAGATAATTCACATAGCACTCGTTGTAATGTA 2722 36 100.0 38 .................................... CTTAAAATTGCTCTTTTGCTTTCTTAATGCGAATTGAT 2796 36 97.2 38 .....................T.............. CTAAGACATAATTCTATCCAAATGTTACCAGGTCTAAT 2870 36 100.0 38 .................................... CAATAGTTAAATGCTCGCTGAATCTTGATAGAAACCGG 2944 36 97.2 36 .....................A.............. GTCTAAATATGCAATCCTTTTGTCTCCTTGGTCTTC 3016 36 94.4 37 .....................TT............. CACGTAGCTTAACTTGCCAACACTTTTTCTATAAACC 3089 36 88.9 40 ................A....TT.....C....... CTTTTGGTCACTATCGATACCGAATCTTGGCAAAATCTTA 3165 36 94.4 38 .......T..............T............. GTAATTGAAATTAACTTCTGAAGTTAGAAAAATATTAG 3239 36 88.9 38 .......T...........T.TT............. ATTATTATTTTATATTTGAAACTTAAAGCTGCTAAAAT 3313 35 72.2 0 A..TT......T..T.T..T.G......A...-... | G [3347] ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 93.9 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : TTTTATTACTTTAAATTTATAATTGATCCTGTCAAAAAATTAAAAATATTGAAAGTTTATTTAATAATGTCGTAATTTTTTAATTTATTTTTATAAATAGCTTATTTCGAAAATCAAAAGAAAGCTCACACCATGAAAATTAGGCAAAGACGTAGAAAATCAAATATCTTTAAATACTAATATATTATAAAATAATATAG # Right flank : GGAAATCAGAATTATTCTCTCAAGTTTATTGAGAAAAAATAAATTAAAAGTAGAGAGGAAAGTAAGAAATTATATTAATTAAACAGAAAAGAAAAATTTGAATAAGTTAAAAATCTTTTAAAAAGAGAATTTATGCTCAATAGAAGGTTTTTCATAAAAGTGATTAATACAAGAAAGTGTATTATTCATTGAAAGAGAAG # Questionable array : NO Score: 6.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:1, 7:0.65, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 3-270 **** Predicted by CRISPRDetect 2.3 *** >JAHLVW010000018.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12F4_9 k141_13786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 40 ..................................... ATAGTATCAGAAAAACGCTCCAAGTATGGTAATAATGCAA 80 37 100.0 41 ..................................... TTCGCGCCAAGCGCTGTTGTTTCAAGCATTTTACCTAAAAT 158 37 100.0 38 ..................................... TTCCATCGTTTGCCTCTGCTTATGCAAGAATAAAAATT 233 37 97.3 0 ........................A............ | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 99.3 40 GTTGCAAAAGTAAAAGCTCAATTATGAGTATTGAAAT # Left flank : ATG # Right flank : CATGTCCAATTTAAACAAGAATAATAAAGTGCAGAAAATAAAGCAATAAAGATACTTTTTTTTAATTACAATAAATAAAATCTGTGCAAATATCTTTATGAATACGAGTCTTTATAAGATATAATAATTATTAGTTTATGCTCGTGTGGGAAAGAAAAATGACTAATAAATTTATTCGAGCATCCATGGTGATACTTGCA # Questionable array : NO Score: 6.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:1, 7:0.42, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTAAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 2202-2466 **** Predicted by CRISPRDetect 2.3 *** >JAHLVW010000018.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12F4_9 k141_13786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2202 37 86.5 38 ....C.T....T.........AA.............. ATCACTAATTCATTCTTCTTTAGGTATAACTTGCCACT 2277 37 100.0 38 ..................................... GATAAAACTCTAAACAGCGTTGAAAGATTAGGTTTATC 2352 37 94.6 40 ....C.....T.......................... ATTATTCCCCCGACAGCAAGGTCTGGTCTCCCTTTATCAA 2429 37 89.2 0 ...AC......T............A............ | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 92.6 39 GTTGTAAAAGCAAAAGCTCAATTATGAGTATTGAAAT # Left flank : TTGAAATTTTAGACCAATTATAAATTACTTTTTTTTTCTTATCAATTAAAGAATTAATATTTTTGTTTAGATGTAAATAACAATTAATCAAAATATACTATTACAACCTTAGTCAAATATAATTCGATATATTGAATAAGGCTCAATCAAGAGTATTGAAATCAGATAGTAAAGGCAGCTATCAGCTCAGGTAGTGCTGA # Right flank : TCAGTAGAACGACATGCAAGTTTTTCTTTCCTTTATTGTTGCAAAGTTAAAAGGAGGAAGATGAAGAAGTCTGGTGATGAAATAAAAACTGTAGAACAATAATCAAAGAGAATGGAGAAGAAATTACTTCACAGGTATCATAATAAAAACCAATCAAAAAATATTTGAAAAGAATAAATCCTAAAAAATATTATGGGAAA # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:-1.5, 6:1, 7:0.57, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAAAAGCAAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 16253-16954 **** Predicted by CRISPRDetect 2.3 *** >JAHLVW010000039.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12F4_9 k141_26012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16253 30 100.0 36 .............................. TAAGTAATGCCAACTATTAATTGTGGATATAAAGAA 16319 29 93.3 37 .................-..C......... TCCATTCATCAATATCTTGAACTAATGCTTCTTTTGT A [16333] 16386 30 100.0 39 .............................. TACGTTCTTCCAGCCTTGAAAAGTTTAATTCCAAGTCGA 16455 30 96.7 36 A............................. TAAATTCCTTTAATTCTTCCATAAGGAAAATAAATA 16521 30 100.0 38 .............................. TTGTTTCAACTGGTTGAGTAATTTTCTTAAATATAAAA 16589 30 100.0 39 .............................. AAACTTTATCAAAAAATGCTCTGTAAAAGATGTGATAAA 16658 30 100.0 36 .............................. AAAGTTAATATAAAATTTTTGTCATAAATATAACTG 16724 30 100.0 36 .............................. AAATTGAAGAATACATGAATGAAAAAAATGATACAA 16790 30 100.0 37 .............................. TCTGGTAGAATTGATATAATTGATAAAATTTTTGAAA 16857 30 100.0 37 .............................. GAGAATTTTCACTAATAGCAACTAGAGGTTTAGCATA 16924 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.1 37 GTTTGAATCGTACTATTGTAGTATTGAAAT # Left flank : CTATAATTATATATAGAATTAAAAGTAATAAATTTGTTGACAAAGTTCTAATTGGATTAGAAAAGGGCAAAGATGACCGTTTTATTTAAATTATGTCGATGTTTATAAAGTATAGTGTCTATTGCAGGTCGACTGGATGATAGTTCTAAAAGAAGGTAGAAGAATGCTTGAAATAGGCAAAAACGACCGCTATAATACGT # Right flank : AA # Questionable array : NO Score: 10.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.99, 7:0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGTACTATTGTAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 4448-4006 **** Predicted by CRISPRDetect 2.3 *** >JAHLVW010000073.1-MAG: Candidatus Heimdallarchaeota archaeon isolate 12F4_9 k141_51867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 4448 30 100.0 38 .............................. TACATTGTTATATCCATTGATTTAAGGAATTGATCATA 4380 30 100.0 47 .............................. TTTTAAGATAAATTTAAGATAGATACCCTCTATCTCGGAAAACCCAA 4303 30 100.0 37 .............................. TAAGTAGTTTTAACGTATAAGTCAGAAAAATAAACAT 4236 30 100.0 37 .............................. TCAATTATATGTCCATGAATCATTTTTTTGTTACATC 4169 30 100.0 37 .............................. GAAGAAGAGAATATCTATTTGAAGGCACAACAAAGGA 4102 30 100.0 36 .............................. CTAGCTTTCGAAAAGCTGTAAGGATAAAATTAAACC 4036 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 7 30 100.0 39 GTTTGAATCGTACTATTGTAGTATTGAAAT # Left flank : T # Right flank : TAGAATGATGATGTACAGCAGTTTGTTTTAAAAGGTCCTTATGTAAAATCAGCTATGGTTGCTAATGTTTTTGGATATGATCGATGTAGAATAACATTATTCGGGGATGGTGATCCATTAGCAGAATTTGATAATTTGTTTAAATACAAGGATGAATGGTTTTTTGTTGCAATCACACTCACTACAAAAAGAGAAAATAT # Questionable array : NO Score: 10.76 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGTACTATTGTAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 15822-11996 **** Predicted by CRISPRDetect 2.3 *** >JAHPZG010000034.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW55_83 NODE_1582_length_20855_cov_5.845625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15822 37 100.0 38 ..................................... ACATTACAGGAGAATTCAATAGATTTAATCATAACCGA 15747 37 100.0 36 ..................................... TTTATCCAATTATTTTTTAGCTTTTTTCTAAAATAG 15674 37 100.0 37 ..................................... AATCCATCGTCTACTTTAAACTGAATAAAATCAGAAT 15600 37 100.0 38 ..................................... ATTAATCTAATCCAATCCACAGCTTCTGGGAACATGCA 15525 37 100.0 36 ..................................... GAGTAATTACGATCGAGATTGGAAATATGAAGACCA 15452 37 100.0 37 ..................................... AAACTCAATAGTTCCAATAGTTTGCCCTGAGACAAAA 15378 37 100.0 36 ..................................... TATATTTAGGTGTATTAGACACGATAAACATAATTC 15305 37 100.0 36 ..................................... ATTTGAATGGTATGAGATTATCTAAGGTTGTTTCTA 15232 37 100.0 36 ..................................... AGTATTAGGTGTATCCCCTACAGCAATTTGAGTTAG 15159 37 100.0 37 ..................................... TTGAATTATATAAACAAGATTGTAAGACAAATGGTAT 15085 37 100.0 37 ..................................... TAATCATATTTGGGAGATTCTGTCGGTAACGTAGAGG 15011 37 100.0 36 ..................................... TCAAATTTCACATCTACCCTATTCCCATCGATTGAA 14938 37 100.0 37 ..................................... AATAACCAATATAATTGATAATTGCCAAAATAAACAG 14864 37 100.0 37 ..................................... ATTTGTGAAATACCTGAGCTAATTCTCCCCATCTTAT 14790 37 100.0 37 ..................................... TTTTTATAATAATATTTTGCTGTTAAATAATTACCAA 14716 37 100.0 37 ..................................... ATGAGTAATGTAATTGGAATACAATTATGGAAACTTG 14642 37 91.9 35 .....................T......T...T.... GAAGAAACACAGAAAACTAATGTAAAAAAAAAAAA 14570 37 100.0 39 ..................................... AGTGACCAATAATAAATGGACTTTTGATGATAAAGAAAC 14494 37 100.0 37 ..................................... TAATAAAGGCTATGAAAATAACTTCGATAATAATCCT 14420 37 100.0 38 ..................................... TATGGACCTCCAGTAATATCTCCAGAAATATCATTATA 14345 37 100.0 36 ..................................... TAAATGCTCCTTGTAATTGTCTATGGGATGTATTTA 14272 37 100.0 39 ..................................... CTATTTACAAAAAGGGCATTTCCTATTCTCCATATTCGA 14196 37 100.0 37 ..................................... CTGGGTTCAAATGCATGTACATGATCAATCTGGAGAT 14122 37 100.0 39 ..................................... CTATTTTATTATCATTCTCATCCAAGTCATAATGATCAA 14046 37 100.0 38 ..................................... TTTAGTGAATTTAGCTTTGATTTCCTATTTAAACTAAC 13971 37 91.9 36 ...T............A....T............... ATCTCATTGAGAGTAGAGATAAAATCAGTCATTATC 13898 37 100.0 38 ..................................... AGTAAATGAGTCTCCTACAGCTATTTGGGTAAGGAATA 13823 37 100.0 37 ..................................... TAAAAACATTAGCTAGTTGCTGTGGGCATGGAAAATA 13749 37 100.0 40 ..................................... TTCAAATTGATGATTTCGATGCAATAGCGACTGGCGATTC 13672 37 100.0 37 ..................................... ACACCAGCGAATGGATCAAGTATAATATCATTGACAT 13598 37 100.0 38 ..................................... CTTCATTATTGATTTTATATAACTTTTCATTATTCTCG 13523 37 100.0 38 ..................................... AATTATCTCAAAAAAAGAGATGATTTTCTTAAATTTAA 13448 37 100.0 37 ..................................... GAAAAATACACACTGGGGTATTACTGGAGTGTGTATT 13374 37 100.0 35 ..................................... TCATAGTAATAATATCCATAGGTTTGATCAGGTAA 13302 37 100.0 38 ..................................... GGGGTCATCATTATCTTTATTATTTTTTTGTTCTAATA 13227 37 100.0 39 ..................................... TACCAGACCCGCGCTGGGCTAACATCTTGTTAGCCTGTC 13151 37 100.0 37 ..................................... TGCGCAGCCAAAACTGTCGAGCCGCGACAGGGCCATG 13077 37 100.0 37 ..................................... TGTTTTTTCGCATAGGGCGTATAACTGTTAAGGATCT 13003 37 100.0 37 ..................................... CGATAAATAGATTATCTCATCTAATTTTTCGATATGG 12929 37 100.0 36 ..................................... CAAATATAGTTGCTTTCACGGGCGTGCTAATATGCA 12856 37 100.0 39 ..................................... AGCGGCATTGGTTGTCGCAGAATTGAATGCGATTGATCG 12780 37 100.0 38 ..................................... AATGTAGCTAAGCAGATTGAGGAGTGCCACTGGGATAA 12705 37 100.0 37 ..................................... TTAAGTTCATATACTTTATCTTCTGTAGGATTAAAAC 12631 37 100.0 38 ..................................... CCACGACCTTAAGATTAAGCTGCTCCTCACTCATTACA 12556 37 100.0 39 ..................................... CACAAGTTAAACACGTAGCTTCGAATTCAAACAATCTTT 12480 37 100.0 37 ..................................... CTTGAGCATCCGCTAAGGTTGTAATTTCCTCATTTAT 12406 37 100.0 38 ..................................... GTTTAGGGTTCTCTGGTTGCGCCTTCTGAAAGATCTCC 12331 37 100.0 38 ..................................... AGACAGTAAGCTATATACAACACTACCAAGGTTACTCT 12256 37 100.0 37 ..................................... ACTAACGGGGCTCATACTCCCCATGCTTTTCATAAAC 12182 37 100.0 37 ..................................... ATTATATTTTTATATTGATGACCGACGGGATCCCAAG 12108 37 100.0 37 ..................................... GCCAATCAAGAGATGAGGGTACTTTATCAACGGAAGG 12034 37 97.3 0 ................................A.... | G [11999] ========== ====== ====== ====== ===================================== ======================================== ================== 52 37 99.6 37 GTCGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Left flank : AATTAATTTTTACAAAGAACTCTCCAAACTATATCATCTCTTATATATTTGCCCAAACTAATGAAATATTGGATTACATGAAGGATTCAACTTTTTAATACTCATGTGATGGAATTACGTATTAGAAAAAAGTAATTTAGTATTAAGTTAGAAAATAATAAATAGATAACAATTTAATCTTATATTATATATATATAAGA # Right flank : GATTATTTACCAAAATTATGATTTTACAATAAAACGCTGAGAATGGTTCTATTTAGGACATAATTTTTAAGTTTGTATGAGATAATGTTTATTGAAAATATATGGGGATATTTTATCTATTTCAATAGTATTAAATATTTCTTCATAACTTAAAATAATAGACAAAAAGAACATCTTTAGAAATAAATGAAAATGAATAC # Questionable array : NO Score: 7.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 49206-57194 **** Predicted by CRISPRDetect 2.3 *** >JAHPZE010000010.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_87 NODE_256_length_126760_cov_69.261521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 49206 37 100.0 36 ..................................... AATAAAATAATCTAATGCTTTTTGATCTTCTTTAGT 49279 37 100.0 38 ..................................... TAAGTCCTTTTTTGAACTTCTCCTTATTTTCAAACCCA 49354 37 100.0 38 ..................................... CTAATCCTGGAGCCGAGGGAATTGATAATCCACCAACT 49429 37 100.0 41 ..................................... GGTGTGGATAGATACTGATACTACAGAAATTATTTATCAAC 49507 37 100.0 40 ..................................... TGGCTACATCTAAAGTCTGCTCTCCATACACCCGTGAGAG 49584 37 100.0 40 ..................................... CTAATTCTATAAGAACAATAAACCCGCCCAGAAGTATACT 49661 37 100.0 37 ..................................... TTATCAGATTCATTCCCGCCGAATTTTTATTTGCCCC 49735 37 100.0 40 ..................................... ATAAAAACTGACAAAAAACAAATCTTTAAATATGTGTGTT 49812 37 100.0 39 ..................................... GAGATTTTACGTCGATTTGCAAAAACCGTGAAAAGAAGT 49888 37 100.0 40 ..................................... ATATCAAATCGGAGTATTTCGATTCCTTTTGCCCTTATTA 49965 37 100.0 39 ..................................... TATGATTTATTATCTGCCGAACTATCACTTGATTGGAAT 50041 37 100.0 39 ..................................... TTAGTAAGATTTCATTTCTTACCTTTCTCTGAATTTGAT 50117 37 100.0 44 ..................................... TATCCACCCACACTTAGAACATATATACTCTTTTTTTGGGAAAT 50198 37 100.0 43 ..................................... TATGAAATATCTATAAAAACAGTATTAAGATCACTTTCATAGA 50278 37 100.0 37 ..................................... ATATTTTATTTAGAGTTCAGTTTGGTAGTAGTAATAT 50352 37 100.0 38 ..................................... TTTTTAAATGTAATATGAAATCCTTTTCCTCCTGTAAT 50427 37 100.0 38 ..................................... TAGAAGGAGCATTATCTCCGCTTACAAACACAATAGAT 50502 37 100.0 37 ..................................... ATAAACTTTATGAATATGATAACTCATTAATAGTACA 50576 37 100.0 37 ..................................... TAGAAGAACTCCATCCACCACCAGCACCGAAGGAGAG 50650 37 100.0 39 ..................................... ATAAATCATAAAAATATGCTCCCCATTTTCCATATCTTA 50726 37 100.0 39 ..................................... TCAGATCATATGACCTACGAGCAGACCGTAGATCGAACT 50802 37 100.0 40 ..................................... GGGATTTTGGTAATATCAATAAAGAATGGGCTCGATTAAC 50879 37 100.0 38 ..................................... TTTCCTTGATAGTATCTAGATTTATTAATTCTATATCA 50954 37 100.0 38 ..................................... GTAATACCTTTCCTAATACGTTCGAGCATTCGTATAGG 51029 37 100.0 39 ..................................... ACACTTAAAATTATAAATTCATCTTCAGTAATATTAAAT 51105 37 100.0 36 ..................................... CTATTATGTGTTCGGCTAACATCTACATAATACCCA 51178 37 100.0 37 ..................................... AATAAAAGGATATATCCTCCCCCAATATGTTGAAAAT 51252 37 100.0 41 ..................................... AAATTTAATTACGATTTATTAACATTAGAGATTAATTCTAC 51330 37 100.0 41 ..................................... TATTCATAATTATTTATATAAATTCGATAAGTATCAGCATT 51408 37 100.0 39 ..................................... TTTGCGTAAAAAACCATTTCTGAAGTGGTATTATCTTTA 51484 37 100.0 37 ..................................... TAACCCTCATATACTGAAGGATAAACAAATAAATCAC 51558 37 100.0 38 ..................................... CAAGGAACCGGTAAAACTTGGACAGCAAATGCTTGGGC 51633 37 100.0 38 ..................................... CTTCTACTGTTTTATTTTCCCATTTAGATTTTAATGTT 51708 37 100.0 38 ..................................... ATACTTTCTATCAGCGTTCTCCATTTTCACATGTAAGA 51783 37 100.0 39 ..................................... TATATAATCACATTTAGAACATCTATATTTCTTTTTAGG 51859 37 100.0 43 ..................................... TAACTTCTTCAATAGCTTCATTAATTTCATCGTTTTGTCTAAG 51939 37 100.0 36 ..................................... CATTGTTCCCCACTCATATAAATATCATCAATAAAA 52012 37 100.0 39 ..................................... GGAATAAGATTCTTTTCTTTTGTAGCACAGGTACTAAAA 52088 37 100.0 39 ..................................... GATAAAAATGCAGTTGTAGCACTAACAATAAGTTTTTAA 52164 37 100.0 39 ..................................... AATTTGTTTAACTGAATAAATTGTCTCAGGATCTTCCGT 52240 37 100.0 37 ..................................... AAAATATAAACTTGCAAAATAGGAAGGGGAGTATTTG 52314 37 100.0 38 ..................................... ATTACTTGACGCTCAATGTATTCCTTGTCATCAATTTC 52389 37 100.0 38 ..................................... ATGTGGTATACATATTTATCTTACTGATCATTGCCACT 52464 37 100.0 38 ..................................... GGGCGTTATTTCAATGATGTTGCTCCAACCTTTACATC 52539 37 100.0 38 ..................................... TCATAAAAAGAGATAAGATAAAAAATAAGAATTTTTAC 52614 37 100.0 36 ..................................... ATTCATAGGGGTATTTTGCTAGCAAACATTCTTAAC 52687 37 100.0 39 ..................................... TTTATCAGAGATCTTCTTGTCTTTTATAGCCTCTTTATC 52763 37 100.0 39 ..................................... GACCATAAATTCTTCATTTATAGCATTAAGTCGAATCCC 52839 37 100.0 41 ..................................... CACAGGGATCACGCGAGCCTCTAACTTCGCAGCATAATTAT 52917 37 100.0 39 ..................................... ACATGCGAACCAGCCATTTGCACTTCCACTAACCCATCT 52993 37 100.0 43 ..................................... TTGGATTGCGGTCATGATGGCGACCAATTCATTATTATTTAAA 53073 37 100.0 41 ..................................... ATTATAGAATACCTTCCTAACTATGATGAATATCGTAATAT 53151 37 100.0 40 ..................................... CATTCAGATATGCGAATGGTATAGTAATCTCTTGAGTTGC 53228 37 100.0 39 ..................................... ATTATCTGAGGAAGCATCATTAGCGGCATTATCACTACA 53304 37 100.0 40 ..................................... TTCTCAAATCCTTCATTTCTGAGTTCGGCTTCATTTTCGC 53381 37 100.0 37 ..................................... TTACCATAAACAACTTGGAAATTATTTGTATCAGAAT 53455 37 100.0 38 ..................................... TCTTATACTTAAAAGTCCTACTCCATTATCGATATATT 53530 37 100.0 41 ..................................... ATATTGACCAATTCTGTTAATCCAATTGGCAAAAGAATACC 53608 37 100.0 37 ..................................... TGTAATATATTATGTCCAAACTCAAAAATTTATTACT 53682 37 100.0 40 ..................................... TATAAAAGACAACGTGTTAAAGAAGTCATAACTGCTTTAA 53759 37 100.0 37 ..................................... ATGAGTTGGTCCATGGTATTTGTAATTGGAGATAATG 53833 37 100.0 38 ..................................... TGCCATAAACTTCAGAATAGTATCTGAGAGTTTATTTA 53908 37 100.0 38 ..................................... TCAAAAGAACACCTAATCTCATATAAGTCTAAAATATC 53983 37 100.0 37 ..................................... CAAAGATGATCCACTCTGGAATTTCAACATTATCTTT 54057 37 100.0 39 ..................................... GCTACGATTATAATAGATAAGAACTCACTCATTTTAATC 54133 37 100.0 43 ..................................... AAAAAGATTATACTACTATCCCAGAAGATGCATTATATACAGA 54213 37 100.0 38 ..................................... CACCATACAGAAAATCCTGTAAATATAGTAGAATAAGA 54288 37 100.0 39 ..................................... GCAACGTATCCTAAACCTAAAGGCAAAACAATTCCTATA 54364 37 100.0 36 ..................................... TACTGGTATCAGTGCTATAATAATTTCCGCCAAAAA 54437 37 100.0 37 ..................................... ATTAAATAATGACCAGTAAGATTAGAAAATAATACTA 54511 37 100.0 41 ..................................... ATTACAATTAAGGAATATATGCCTAAAATCAGACAAATAGT 54589 37 100.0 39 ..................................... TATATCTGCACCAAATATAAATTACCCGCGTCTTTTACT 54665 37 100.0 39 ..................................... AATATAACATAAGGTAAAGGGAAAGTATAAGATATTATC 54741 37 100.0 38 ..................................... TAAAATCTGATATTATATTACTTCTGGCTACACTAAGG 54816 37 100.0 37 ..................................... CTTTCTTTTTCCAAATTTATTGGAAATTTTTGGTAAT 54890 37 100.0 37 ..................................... GAAACGATTTTAAATTGTTAAAGTCTCAAGTTAAAAA 54964 37 100.0 39 ..................................... TTAATTGATACAATTTTGTCCCATATTAAGTCTCGAACT 55040 37 100.0 39 ..................................... ATATAAGAAAGAATAGTTCCTATTGAACCTATTATCAAT 55116 37 100.0 39 ..................................... TACACTATAAGTATAATGAATGGTTCTTATATCCTCTTG 55192 37 100.0 39 ..................................... TTTTAACGATTTCTCTATTCATTTTACGTTCTTTTTTCA 55268 37 100.0 41 ..................................... TGATTTTCTCCCCCGCAGGAACATTGGCATTTTTCAGGTTC 55346 37 100.0 40 ..................................... ATCCAAAACTCTCTCGTCCCCGCTGTCGCTTGCGTTTCAT 55423 37 100.0 36 ..................................... ATCGAAATTTTTCATCACCTTTTTATTTCCACTGCA 55496 37 100.0 40 ..................................... TGAAAATAATGAATATTATTACTGAATTAAACCCTTCTGA 55573 37 100.0 38 ..................................... TATTTTATCCCTTTTTTTGCTTTAATTTTATCTTTTCC 55648 37 100.0 38 ..................................... GAATGAAGCATTTTAATATATTTTTTTACATCTCTTTC 55723 37 100.0 38 ..................................... GATAGAATTGCCATCGAGAGAAGAATCAATGTAATTAA 55798 37 100.0 38 ..................................... AAGGGCACTATAACCTCAATCGGTTCCTCGATTATTGG 55873 37 100.0 39 ..................................... TAGTATAAAAGTATGATCATGAGGGACTAATAAATTAGT 55949 37 100.0 36 ..................................... TAGCCCATATCTTAAGTTGGTCAGCTCCATCCCCAA 56022 37 100.0 40 ..................................... ATCGATAAATGCTTCCCATCCAAACAAAACCCCACCAAAT 56099 37 97.3 38 ..C.................................. TACATAAGCCAATAAAACCCGCTTGATTTTGCGCTATT 56174 37 97.3 39 ..C.................................. TTGATTGCTTGTAATAATGTATAAATATCTAATTCATGT 56250 37 97.3 41 ..C.................................. GGAAATCAGTAATATCCAGATGAGCCTGACCGATGACATGC 56328 37 97.3 40 ..C.................................. AATTACTTGTTCCATTCCAAATATGAGCCCACTCATTAGT 56405 37 97.3 38 ..C.................................. GAATGAAGCATTTTAATATATTTTTTTACATCTCTTTC 56480 37 100.0 38 ..................................... GATAGAATTGCCATCGAGAGAAGAATCAATGTAATTAA 56555 37 100.0 38 ..................................... AAGGGCACTATAACCTCAATCGGTTCCTCGATTATTGG 56630 37 100.0 39 ..................................... TAGTATAAAAGTATGATCATGAGGGACTAATAAATTAGT 56706 37 100.0 41 ..................................... ATTTAAATAATATGTTATTCAACTATACCTTTTTCTATAAT 56784 37 97.3 38 ..C.................................. TATGTTTTTTCATGACTTCATAAGCATGTGGAGTAATA 56859 37 100.0 38 ..................................... TTAGTTTTTTTATCCGGGATGATTTCTTTTTTTGAATC 56934 37 100.0 37 ..................................... AAAATACCACGCCCTTTCTGTCTCAAACTCTAAAAGT 57008 37 100.0 39 ..................................... GTTCCCTGTCCTGTGTCTCCCATGCGACCACGACCTTTA 57084 37 97.3 36 ..C.................................. TCAGGATATTTTTCTAACAAAGGAAGTCCTAAATGT 57157 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 106 37 99.8 39 GTTGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Left flank : AATTATTCTCTAATGATATCTCTTCATATAATATCCTCGCGTACATCTCTGCCCAAATATGCGAAAACTTGACTTTTGTAAAGGAAATAGTATGCCTGCATTTTGTTACTAAGATCCAAAAATGAAAAAAGCCAATTTAATATTAAGTTAGAAAGAATTAAATAAATGATTATTCACTCTTATATTATATATATATAAGA # Right flank : TTAATCTCGTTCTTTTTAACATCTATAGAATTATATACCGAAAAGATGGATTCATATGATTTAAATTGTTGTTAACGAATAAATATTTAAATATAACCGTGAACAATTAAAATTATCTCTAAAAAATCCATCAAAATTTATATTCTTAGTTTCAATGAACTTAAGCAATTTATATAAAAAGGGTTTAAAAAAATGGCTAT # Questionable array : NO Score: 7.43 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 73701-73963 **** Predicted by CRISPRDetect 2.3 *** >JAHPZE010000010.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_87 NODE_256_length_126760_cov_69.261521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 73701 36 97.2 40 ..C................................. GTTGCAGAGGTAAAATTAGCAGCAGCTTCCACGGTTATCG 73777 36 100.0 39 .................................... TTTTAAAGATAAAATAAGGAATGATGAAAGATTAAAATG 73852 36 100.0 39 .................................... TAAAATTAAAATAATGTTCAACAAATTTATATAAAAGCG 73927 36 94.4 0 ............................C..A.... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 97.9 40 TTGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Left flank : TTTTGCTTAAGGGGTTTAAGATTGAGCAAGACACTCAAAAAAAAATTGTGTAGCCAATCAAGCCTGAAGAAATTGACCGAGTTGTTTACAATGATTATATAAAGAGAAGATTTAGCTGAAAATTGCTGTTTTTACAGGAGATTTCTAAGGTACAAAAAATAGAATTAAAAGCGGGATGTTATTTTTAATAGAGCTAATAA # Right flank : TCCTTCCTTCATTTCCTTAATAGTAAAGCAATATTGATTCATGGTAAAGAATATAGCTTCAGAAATTAATCAATAGATTTAAAAATTAAAATATTATAAATAATTTTAAAAAAACTTAAATAAGGTAAACACCTTATTTCCCTTATGACAAATGTTACTTTTAGTGTTGATGATGATATTCATAAAAAGATGAAAGAACA # Questionable array : NO Score: 6.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:0.41, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAAAAGTAAATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 44051-43411 **** Predicted by CRISPRDetect 2.3 *** >JAHPZE010000013.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_87 NODE_311_length_113230_cov_72.397252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44051 29 100.0 32 ............................. TGGAAAACGCGAAGCTAGGGCAAGCAAAATTA 43990 29 100.0 32 ............................. ATATACTTGAAGATCTTTTCTAATATCGCCTC 43929 29 100.0 32 ............................. GGTGAATAATCATGACAAAAAACGTAGAAGGA 43868 29 100.0 32 ............................. TCGCGCCCCACAGTTTATACATTCAAATATCT 43807 29 100.0 32 ............................. GAATTATAACCATTTGTTCATAAATAGAATTT 43746 29 100.0 32 ............................. AAAAATTAAAGAAATATTAAAAAAATATATAC 43685 29 100.0 32 ............................. CCATTCAAGAAAATGTGAACCATCATCTATTT 43624 28 89.7 31 ....-......A...A............. GAGGAATACGATGTCTGAAGCAGAATTAGGC A [43614] 43564 29 89.7 32 .A.........A...A............. GAAAGATGAAAAATTATTAATAATTATGTTTT A [43553] 43502 28 79.3 30 TA..-......T...AC............ AGTCAATTTAATATGGATAGTTGGATTTAT G,A [43489,43494] 43442 28 79.3 0 GAA.......-..........T....C.. | AT,T [43426,43435] ========== ====== ====== ====== ============================= ================================ ================== 11 29 94.4 32 ATTTTACCCCTGCACGTGGGGATGAATCG # Left flank : AAATCTAAATTAAAAAAATAACGCAAGAGGAAATTAAGAAAAACTTGGATAATGTCGGACTACTCACCGACCAAAAGGGATGAAGGAAAAAGTTCATATTTTAAGAATAATAGTAGAAGCGGTGTAACCATCACACAATACTAAGAAATTCTATCGTCAAGGAATTTAGCGAGATTTCGATTTCGGTTAAAAAAAGAAAT # Right flank : AAAGTATAAATCATTCCCATTAGTTTTTTCCTTCTTTTTCTATATACTTTCTTAAATTTTCCTATTCAGTTTATCAAATTAAACTTCATTCTGTAATGTAATTCATGTTTAAACTGCAATTTATTTATTCTTTATAGTAATATAAAGTTTTAGTTATAAATTTATTCGAATAAGTGCCTTTCTTATTTATACCTTTTCAT # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:1, 7:1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCCTGCACGTGGGGATGAATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10566-11600 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000016.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_266_length_123838_cov_18.312264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 10566 36 100.0 40 .................................... TATACGGGTACATCAGCTGTAAAGTGGCTACATCTTATTT 10642 36 100.0 41 .................................... TAAAAAGCGTTTTTGCAATATATGATAACTTCATTTATTTA 10719 36 100.0 39 .................................... TTTGAACAGCATCTTTCAAGGCATCTCTCCAATTAGAAT 10794 36 100.0 42 .................................... GAAATTCATCTTATTGTGATAATCCCTGTATATCTGAACAAA 10872 36 94.4 42 ............G..T.................... TATCAGAAACGCAAACGGGAACACGACTCCCGTCTTGTTCAG 10950 36 94.4 38 ...AT............................... GTTGCATAATCTATTTTGTTTGATCGTTATCATAAGCT 11024 36 100.0 45 .................................... GAAAATTTGGATGTTCGAATGGTTCTCCACCAGAAAGACTAACAT 11105 36 94.4 41 ..........A..T...................... GCTTAAGCTCTTCTTCCATCCCAACACAAATCTTTAGAACA 11182 36 97.2 40 .........A.......................... GTGTCCATTTTTCCTAAGAGCTGTACCATTCCTTGTAACA 11258 36 91.7 42 ...................T.......AA....... TATCAGAAACGCAAACGGGAACACGACTCCCGTCTTGTTCAG 11336 36 91.7 39 ............G..T.....G.............. TTTAAAATTGTAAACTTTGTATTTATCTCTAAACTCTCC 11411 36 86.1 37 ....T.......G..T.T...C.............. TCAATTGTTCTCGGTTTCTTCATGTCCATCTAAGAAC 11484 36 72.2 44 A...T..AGA.....T..CT.CA............. TTCATAAGCGTTTGTACCCGCCGTAGTTCCTACCGTATGCTTAA 11564 36 83.3 0 A..AT..A....G..T.................... | ========== ====== ====== ====== ==================================== ============================================= ================== 14 36 93.2 41 GTAGCAATAGGAAAACACTCATCTAGAGTTTTGAAA # Left flank : GAAATTTAAAATAATTTCCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGCAATAGGAAAACACTCATCTAGAGTTTTGAAATTTAAAATAATTTCCAAATTTATCTCTATAAACCCTTTTTC # Right flank : TTTGAAATATGGAATTTGAAATTTAAAAAAGAAAATTGATTTTTTTTCCACTATAATAGATACTTTGTAAATGATATTCTTTAGAAAGTTCCATAAGAGCAATAGAAATCGGTTTTGTACCGCCAGTAAGTTCACAGAGGATGTCAAAGTTCAAGATCTCTTTTCTGACTATTTGATCTAACAATTCTTTTAATTTAGCG # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:1, 7:0.25, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAGGAAAACACTCATCTAGAGTTTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 18490-16639 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000034.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_2852_length_21242_cov_18.672299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 18490 37 100.0 36 ..................................... AAATTCTCTCGCTCGTTTCAAGAGCGATTCCAAAAT 18417 37 100.0 41 ..................................... TCTCCAATGAGATATATTCCCATTATTATTAATATCAACCA 18339 37 100.0 36 ..................................... AAATTGCTTCGATCTTTGCTTCCTCGTCGATTACTA 18266 37 100.0 38 ..................................... ACCAACGAATCGAAAGAATCGTAAATGTTTAGATAAAC 18191 37 100.0 36 ..................................... ATCAAATCATAATCCTCGAAAGTTTCGTACCCATAG 18118 37 100.0 38 ..................................... TGTCAAAACTATTCACCGTTAGTATTGGCGTTTTTCTT 18043 37 100.0 37 ..................................... CAAGCGAACACATTTGGAAGGATTATCTCGTTCGGTA 17969 37 100.0 38 ..................................... TTTTGAAGAGAAACCTCAACATCTTTAGCAATTGGAGT 17894 37 100.0 42 ..................................... ATTTTCCAGTGGAAACGAAGGTATGTTCGTTGCCGGCGTACG 17815 37 100.0 42 ..................................... TGATAAAGAACAGGATTTAGGACTATTGAAATTTAGAAATAA 17736 37 100.0 38 ..................................... CCGTATTGGGGTTCAATTACACGGGAGATAACGGCAGC 17661 37 100.0 39 ..................................... TTGCAACTCGTATGAGTTTATGTGGCAACTACGAGAGGA 17585 37 100.0 40 ..................................... TATCGTGCTTGTATGGATGCCAATGCACCTAATAATGCCT 17508 37 100.0 41 ..................................... AATAATGGTATTGCCAATTCGTGTTCAAGAATGGCACTTCT 17430 37 100.0 41 ..................................... CGATAAGTAGCTGTATGAAGAGAACCATCAATACTATACCA 17352 37 100.0 41 ..................................... GTTATAGATAAGCTGAGTCGCGTAGAGAATAGACCCTAAAA 17274 37 100.0 37 ..................................... GTATGACGTAATAAGTGAGTATAGATCCGTTTATCTA 17200 37 100.0 38 ..................................... GGACAAATTAATTTCAGATTCAGATTTTTGATAAAAAC 17125 37 100.0 41 ..................................... TCTAAAAACTGTATCATTGACTCATTCTTTATAGAAGCTGA 17047 37 100.0 38 ..................................... TTTGGAGATAATAAATGGGTTCATGTAGGACTTCCAAG 16972 37 100.0 36 ..................................... AGAGTAGAGCAAGAAGATTATGATGAAGATGACTTC 16899 37 100.0 37 ..................................... TCTAGAATTTGTTTGTTAAGATATACTATGAATAAAG 16825 37 100.0 38 ..................................... ATTGGTTTCAGCGTTTTGGTAAAGTGAATCGGTCGATT 16750 37 100.0 37 ..................................... CAATGGGATACATCCTGGTTCGACAAGTTCAAAAAGA 16676 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 25 37 100.0 39 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Left flank : GTGCTGTATTACCATTAAATCGCGTAGCATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAATTCAACAAGCGAATATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAATAATCCATTCG # Right flank : TGCTTTTATATTGTATGTTTATTTTGAATAGCATTGGAAAGGAAACTATAAAGGTTTTCTTTTGATGTTGTCACTAATTTTTTAAGGTTTTTGTTCATGCATATTATAAAAGCAAACGATACATAGAAAGTGTTAAATTCTCTAAAATGGATAATAAAATAGATCAAAAAGTATTCACTCCAGAATTCTTTAATTTTAAA # Questionable array : NO Score: 7.52 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 21242-18625 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000034.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_2852_length_21242_cov_18.672299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 21242 37 100.0 37 ..................................... GAAACACTAAAGATATATAAATTAACTTTCTCTATTA 21168 37 100.0 37 ..................................... TCTGAATTATCGATACAGATAAACACTCCTGCATCGC 21094 37 100.0 45 ..................................... TGATTTAATCTTGAATATTTATGTTTCTTCTTTCTTCGTACTTGA 21011 37 100.0 40 ..................................... CATTAGTTAATCCCAATCGTTCCAGAGTTTTTACTACTAA 20934 37 100.0 39 ..................................... AATGGAGAGATTCGAGAGTTAATAAAGTTCATAATTTCA 20858 37 100.0 37 ..................................... TTCTAAAGTTATTGCTACATAAACCATTCGTAGTAAA 20784 37 100.0 41 ..................................... TACTCCCTGGATCTCCCGAGTGATCGGTGATCCAATCATCG 20706 37 100.0 39 ..................................... CGTTAGGATACACGTGGGTATTTAGTCCTTATTACGACG 20630 37 100.0 39 ..................................... TACGCGACATTGCGTACGGAAATAAAGTCGCTCAAACGA 20553 37 100.0 38 ..................................... TATCACCTAGCAAAGTACCCGTTTCGTCCTCCACTAAC 20477 37 100.0 40 ..................................... AATTCTGGATCGATCAATACCTTACGATTGACCCTCAAAA 20400 37 100.0 39 ..................................... TTCGTTAGAATATGCCGCAGCGGCAAATTTATAGAGACC 20324 37 100.0 39 ..................................... TCAAGCATCAATGCTTCAAACTACAAGTAATTATATAAT 20248 37 100.0 39 ..................................... CAAATCGTTTCTTGAAGGAACCATAAGCGGATTAGAAGC 20172 37 100.0 36 ..................................... TGGAAAGCTCGGTCGCACTGGGTAAGGTTAAGGGAT 20098 37 100.0 40 ..................................... CCCAATTTATCTAACATTTCTCCTATTAATATATGAAAAT 20021 37 100.0 38 ..................................... AAGGGATTGCGGAGGCGTTCAAGTAAATGAGGGTTAAA 19946 37 100.0 39 ..................................... TGGATTAGCATAGCAGAATATCCAAACCATTCTTTCCAA 19870 37 100.0 39 ..................................... CACCTACGCTCTCGGCACTACTCTTCTCTGCGTCGTGTT 19794 37 100.0 39 ..................................... TTGGAGTAGGATTCATTTGCCGTGGAGCTATCATTGCTA 19717 37 100.0 37 ..................................... CGATATTCTGCTAAGTTCCAAATAGCCCCAATTCCTT 19643 37 100.0 39 ..................................... CCAATTGTCTTTAATCGTGGGATATTTCCGCTGGTATAG 19567 37 100.0 37 ..................................... TTTAATTTTCAAACGCGTCACTTTATCTTACTCGTCA 19493 37 100.0 36 ..................................... CACCAACTATGATTGCAGCCATTATATTTCCAAACG 19420 37 100.0 39 ..................................... TTTTTGATGTAGTAGCGTATTAGGCGGAGCTACTACAAA 19344 37 100.0 36 ..................................... ACCGTACCGAGAGAGCTTGAAGTACCTCCTAACTCG 19271 37 100.0 39 ..................................... CCAGACCCCCAATCCGAAACGTAAAAGTGCATAACCCTA 19195 37 100.0 39 ..................................... TATTACATTTAGTACACACAATGGTATTTGGCATTTCCT 19118 37 100.0 39 ..................................... CGTCTAAACGAATGATACCAACTAAAGAAAAAGCTTCCA 19042 37 100.0 38 ..................................... TAACACTGACGCATTGGATTTAGTGGCTAATTCTATTA 18966 37 100.0 42 ..................................... TCAACAAGCGAATATATCGACCATTCAACAATAATCCATTCG 18887 37 100.0 37 ..................................... TTCATTTACAACACGAAGATTTTATCGAAGCATATCA 18812 37 100.0 38 ..................................... TTCATTGTTCTAATTGTTTGAAGTTTTTCTTTAATGCT 18737 37 100.0 38 ..................................... TTGTAATATTGTGCTGTATTACCATTAAATCGCGTAGC 18662 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 35 37 100.0 39 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Left flank : | # Right flank : TCAACAAGCGAATATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAATAATCCATTCGATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAATAAATTCTCTCGCTCGTTTCAAGAGCGAT # Questionable array : NO Score: 7.46 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 509-1839 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_4_length_991380_cov_17.799568, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 509 37 100.0 38 ..................................... CGTGAACCTCTATCCATGAATAACCCGTTCATTGTCCA 584 37 100.0 42 ..................................... AAAACAACACGCCCCTATCATAACAATGACTGTGGTTTATTA 663 37 100.0 38 ..................................... TATATTTTTCGATAAATACATCTAATTCGTGTTCAAAA 738 37 100.0 37 ..................................... ACTAGGAGAAACTTTAATGTACACTTTAGATGTAGAA 813 37 100.0 41 ..................................... AATTCCCTTAGAAAATCGTGGCAAACCTGGTATATGTGTGA 891 37 100.0 42 ..................................... TAAAGAATTAGGTGATATCACTAGTATAGATTCAAGATTATG 970 37 100.0 37 ..................................... TGGTATAGTATCTACAAATCCTAACCCGCACTTATCG 1044 37 100.0 39 ..................................... TACACAGGTTCATGGTAATAATCCCATTGTTTGTAATAA 1120 37 100.0 43 ..................................... ATCGTAATAAAGATTTTTAAAGGGATTTCTATAATCTCTTCAA 1200 37 100.0 37 ..................................... TATATATATAAGGTTTGTATTGTAGAATTAATGCTAA 1274 37 100.0 37 ..................................... TTTTATAATTGTATAATGCCTCATCTAATTTTATATG 1348 37 100.0 36 ..................................... TTTCGAATGTAAGATTTATTGGTAATTAACTTATTA 1421 37 100.0 37 ..................................... AAAAATTTAGCTTGTTCTTGTGAGACTGGTCCTATAA 1495 37 100.0 42 ..................................... CCTGAGCCAACATCAGAACCAGAGCCTGAATCCGTACCAGAA 1574 37 100.0 42 ..................................... TTTATGTTGATTCTTTAAGTTGCAGTTGGAACTCTGGTTACA 1653 37 100.0 37 ..................................... TAAAATATCCTTCATCTAATCCGGATACAGAATAGTT 1727 37 100.0 38 ..................................... ATTACTCGATATACTTCGCTTGGTTCGGTTTGTTCTAA 1802 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 39 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Left flank : TTAAATTCATCCATTAGATGTCTCACACAGACTATCGCGATAATGAAGGGCTTCGTTTTGACCCTATGCGAGAAAAATCTCTTCCTTTTTCACTCAGTAAAAAGAATATTATTATTTCTAAAGCGAAAGCACGATATTAATATTAAGTTCAAAACAATTATAAACACAGCTAATCATTCTTATATTATATATATATAATA # Right flank : ACCACTGAAGGGTCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGGCTACCCGATTACATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAATGCATCTAAAGTTGTTGGTGTGATCGA # Questionable array : NO Score: 7.50 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 2 1976-2629 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_4_length_991380_cov_17.799568, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1976 36 100.0 36 .................................... TGCATCTAAAGTTGTTGGTGTGATCGATACTATTAT 2048 36 100.0 42 .................................... CTAAAACTTCTGTTAGGTTCCGAACTCCGAGATATTTTTGAA 2126 36 100.0 44 .................................... CACATTGGATGCACATTCTTACGTTTTTGTTAAATAGTCCTAAA 2206 36 100.0 45 .................................... CATACTTACTAATTCTACCGATTCGGTTACATTTAACGCTTTTCG 2287 36 100.0 43 .................................... CTAATAATCTATAGCTCTTGGAGTTGAGTCTATACCTACCCAA 2366 36 100.0 39 .................................... CAATTCATGTATCAATTCGGCAGCACAATCGTAAGTAGT 2441 36 100.0 37 .................................... CCGATAAACTCCGCTCGGAAGTTCTTGAACTCGCTTC 2514 36 100.0 42 .................................... TTTAAAAGTTTAAAGGTCCGTTGAAAAATCTCTTTAATGTTA 2592 35 94.4 0 ....T......-........................ | G,T [2593,2602] ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 99.4 41 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAA # Left flank : ACTTCGCTTGGTTCGGTTTGTTCTAAATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAATACCACTGAAGGGTCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGGCTACCCGATTAC # Right flank : TTGTATTTATTAATTGGACACCAGTAAAGTAAAAAACAGAGCGTTATCACAAACCAAGCTGCCATTATTGAAAACATGTTCAAAAAAGCGAAAATCTTTCTAAGAGTGAAACTATATATATTAATTGGACCATAAGAGGATTGACAAAACATTCATCAATCATGAATCATTAAATTTTTGAAATCTGAGATTTATAATAG # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 6958-8066 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_4_length_991380_cov_17.799568, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 6958 35 94.4 40 G..........-........................ TTTTGTGGCATCGTGAAACGACGAACTGTAATAATATTGA T [6966] 7034 35 88.9 40 ...C...-...A...A.................... TAATTTAGAGTCGGGTCAACTCGAAGATATTTATCGTATA T [7044] 7110 36 91.7 43 G........T.A........................ TTTAACAATCTCGTAATACTGAGTACTCATGTATTTAACTATA 7189 36 91.7 39 G........T.A........................ CATTGCCTACCGAGAGTATTGCGATGTTCGCTCGCGAGG 7264 36 100.0 40 .................................... CTATCCCGAACTAACCGTCTAACTCACTTCCTTTTCTTTT 7340 36 100.0 41 .................................... CTTTCCATACACAATCCACTGGTCTGCTCCTAAACCCCTGT 7417 36 100.0 39 .................................... CATTGATTTGCTTTCTCCTCACGCAACCACGATAATTCG 7492 36 100.0 41 .................................... CTCAAACACGCTTTCTTACATTCTTTCATTTAATATCCACT 7569 36 97.2 42 .C.................................. CATTCTTGCGTCAATAGCAAGCCTAGCTTCGGCGTTAAACTT 7647 36 97.2 41 .C.................................. TTCAGAAACAGTCGTCGTATCCCATTCGTAGCTAGATTCTA 7724 36 94.4 41 .........T.A........................ TATCGTTTCCCTTTTTATATAAATCTTCTTTTTGTTTTAAG 7801 36 100.0 41 .................................... TACCACTGAAGGGTCATGAGCCCAGCCGGCTACCCGATTAC 7878 36 100.0 42 .................................... CTGGAAGACCGCGGTTATTTGCGTTCCTTGATATTCTGTACC 7956 36 100.0 38 .................................... TATTATTACGTCCATAATAACCCGCAGATATTCGTCGA 8030 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 96.8 41 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAA # Left flank : CGAATTAATTTCTTCCATTAGATGTATCACACAAACCATTGTGAAAAGACATTCCCTTTTGCAAACCTATATGAGAAAAATCTTTTATTACTAAACTCGGTAAAAATAAATTTTTATTCCTATAATAATAGAGTAATTTTAATATTAAGTTCAAAATAAATATAAACGGAGTCAATTATTCTTATATTATATATATAAAT # Right flank : TGGTATCGGAAAGGAAATCATAAGGTTTTTATTCAATATATAAAAACAAACACAATTGATATGCAAGATATTTCCAAAGAACAGAAACAAAAAATCAAAGAGGTTGTTAAAAAAGAAGAAAAGAAAACGCAATAAGTAGAGGAACAGATTTTAAAGCGCGAAGAACAAGAAAAGCTTGCAAAAGAGATAAATTTCCAACA # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:1, 7:0.21, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 4 22999-22837 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_4_length_991380_cov_17.799568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 22999 31 83.9 34 .C.G.............A....G.......T TGATTATCTAAAGGAAGCTGATGAATTGATCCAT 22934 31 100.0 35 ............................... TGGAAATACTGTCTGAAATGGGTATTTCTTCAATA 22868 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 94.6 35 GTTTTAATCTATTTCTAGTGAAAAAAGAACA # Left flank : CTCCGTTTTTTGACGCTATAGCTATTCTTTCTTGGAAAAACTCTACTATCTTCTTCAAAGCTGACCAGTTTATTTCATTCCACCAATTATTCCCTTTCATTGTACTATTTTGAACATTAAAATTAGTTGTGATTATGATTAAAATATTTAAACATTTTCATGTGATTTTGAGATGATATTCTGAAATATCGATGAATTTT # Right flank : GGTAACGATCTCTTAACAGAAGGCGAACTCGAGCCGCTTTGCAGATCGAGGCGTACGATAGCGTAAGACCTGTAACCTATTTATAAAGACGAAGCATCCTATTTAAGGCTTTCGGTTCTGCGGAGCAAGTACGGGTTAACCACACCAGCAGTAATCACCGTAAGAGCATTTTCCGCACCAAAATTCGTTTTTTTCTCGCT # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.34, 7:1.15, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATTTCTAGTGAAAAAAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 27563-27333 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_4_length_991380_cov_17.799568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27563 30 96.7 37 .............A................ TTTTTTTGCCACAGAAAAAACCAATGGTCTAATTTAA 27496 30 93.3 37 ....C......C.................. ACGAAATCCCAGGCACCTATTCTAAAACCTGCTTCCC 27429 30 100.0 36 .............................. GCTTGTTCTACTATCGAAAATGTTGTTCCACTTCGC 27363 29 90.0 0 ...............-............GG | C [27342] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.0 37 GTTCTTTTTTCACTAGAAATAGATTAAAAC # Left flank : TACTTCCCAAACGGGGGTATTTCGTTTTTCACTAGCAATAGATTAACTTACTGCGCCTGGGAGCGCCCCAAAAAGGACCGAGTCAAACGAACGGTTAAGTTCAAGTAAAAGAAAGTGGAATAAGTTACAGATCCTATGCGATCATGCGACTTGATCTGCAACGCAGCTCGAGCTCGCCTTCTGTTAAGAGATCGTTACCT # Right flank : ATCGTTTCGAGAAAAAATTACCCGCGGGTATCTTTTCTACATCGGCTCTAGGCGACGCTACAAGGTAAAAGTCACCCTTCAGCTTAAATCTAAAATACAAAATCTTATAAACCAAATCAAATCGTACATACATTCGGATAACCTTCCCAAGCGAGAAAAAAACGAATTTTAATGCGCAAAATGCTCTTACGGTGATTACC # Questionable array : NO Score: 4.32 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.99, 7:1.29, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTTTTCACTAGAAATAGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1947-1768 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000040.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_5728_length_10716_cov_19.095113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 1947 26 100.0 50 .......................... CCACAACTTTGGCATACTCACCCAGCTCGATTTCCGTTCGTTACATAATA 1871 26 96.2 50 .................A........ ATGACGGTAAAAGGAAAATATGCTCTAGAAAATTATAACAAATGCATAGA 1795 26 96.2 0 ..........T............... | T [1793] ========== ====== ====== ====== ========================== ================================================== ================== 3 26 97.5 50 AATAGCTTCAGAAAGAAGATTGAAAT # Left flank : ATCAATATTTTTAAAATAAAAGGATTTTAAAATCTTAGAATTTTCATCTAATAATAGAGGTATTTTCGTTATAATAAATTTATAACTTATTTTGGAAAACACTTGGTACTAAAACGATAAAGGGATATAAATATTAAGTTCAAAATTAATATAAACGCGGTCAATTATTCTTATATTATATATATAATAATTGTATAGTC # Right flank : CCACAACTTTGGCATACTCACCCAGCTCGATTTCCGTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATAATAAATAGCTTCAGAAAGAAGGTTGAAATTGCATTTGTATTGCAACTCCATTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.26, 7:-0.40, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 10699-5074 **** Predicted by CRISPRDetect 2.3 *** >JAHPZD010000040.1-MAG: Candidatus Lokiarchaeota archaeon isolate LW40_40 NODE_5728_length_10716_cov_19.095113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 10699 37 100.0 38 ..................................... TTGCTGCGTTATATTTATCGTCCGAGCCATCCGAGGAA 10624 37 100.0 40 ..................................... CCCAAATAACGAATAGATTACCACCCCCGCCAAAATTCTG 10547 37 100.0 40 ..................................... TACTTACAACACGGATGCGCTAGATATGGTCGTTAATTCG 10470 37 100.0 37 ..................................... TGTAAATGTTCATTAGCATACTGACGATCAGGGAAAT 10396 37 100.0 40 ..................................... TTACAGAATGGGCAGCCAATTCCAGTAATGGGATTGGTGT 10319 37 100.0 39 ..................................... CATTACTACTCCCAATATAAAACTCTACAATATCAGCTG 10243 37 100.0 35 ..................................... TCTCAATGGGAAAAAGCAGAAGTCACCCTTTATTT 10171 37 100.0 42 ..................................... TTATTAGAGTACCTTTTAGAAAATCCTCGAAATTATCTGAGC 10092 37 100.0 38 ..................................... TATTCAAAAAGAGCAAGAATATTATTGTCTTAATTGTA 10017 37 100.0 40 ..................................... TTTAAGGATCTTTCTCCCTAATGTACCTTTAGCGTTGAGC 9940 37 100.0 40 ..................................... ATATCATCAAAGAACCTCAACAATCATCAATAACTTCGAA 9863 37 100.0 42 ..................................... TTGCTGTAATTGATAGACCATTCGGTTCAACGATAATTTCTA 9784 37 100.0 38 ..................................... TTTGATTACCTTTCTGAAGGATTTTTTGGCGGCATAAT 9709 37 100.0 38 ..................................... CAACAAACGCCGCGACTATCGCAAGAATTCCTCCTTCA 9634 37 100.0 40 ..................................... TTCAAAACGATAATACAAATGGTATTGATTCTCTTGATTT 9557 37 100.0 39 ..................................... ATTTCGTGTTAAATCTCATGAATATAATTAATTGGATCG 9481 37 100.0 38 ..................................... TAACAATTTTGATATTGCTGATTTAATAGTAAATATTT 9406 37 100.0 38 ..................................... CAGTTGTACGAATCAGCATTAACGAAGACGATCTTGTT 9331 37 100.0 43 ..................................... ATCGAGAGAGAAGTAAATTCTACTGATATTAACCTTAAAGTAA 9251 37 100.0 40 ..................................... AAAAGGGCCATAACATCGCTAGATATTCCTCTATCAATCG 9174 37 100.0 38 ..................................... CTGATAATACGTTAAAAATCCCGGTTTGTTCTTATCTA 9099 37 100.0 40 ..................................... ATTAAAGAAAGACCTGGATATCAATATGTTTATTCTATTA 9022 37 100.0 40 ..................................... GTAAATCCATGTGAATAGGTTGCAGGTTTTTCCATATATA 8945 37 100.0 42 ..................................... GGTGCGATCCATGCCATGGCGTTCACAATATATGCCTATGAT 8866 37 100.0 38 ..................................... CGAAGTAAAGGTCTCCGTCGTCCTCAACGCAGAGATGA 8791 37 100.0 40 ..................................... AAAGTTATTTACGCGATGGCTGTCCACGTATTCTTTATAA 8714 37 100.0 40 ..................................... TTGATAATCAAGCTCGTCCTCGTTATCGCTCATTCGTACT 8637 37 100.0 38 ..................................... ATACGGGTACATCAGCTACTAGGTGATCCAATAGAATA 8562 37 100.0 36 ..................................... TAAAATAACATGGGGTTCTAAATATGAAGAAACTCT 8489 37 100.0 38 ..................................... ACATTTATAATTCTATCCATTCCTCCCCACTACCATCG 8414 37 100.0 37 ..................................... AAAAACACGCTTAAAATAAACACGAATATTATAATTA 8340 37 100.0 42 ..................................... CCAGCACCATTAGCACCACCACCACCAAATCAAATACCTACA 8261 37 100.0 40 ..................................... ACAAAACTCGAATTTTATCTATATTAATTCCGATTGAGTA 8184 37 100.0 40 ..................................... TTTGGAATAATGATTTATCCCAATTTTTCTGAAAATCGAG 8107 37 100.0 39 ..................................... AATAGCGTATTAAGCCATTTGCTTGACAGAAATTGTAAA 8031 37 100.0 38 ..................................... TTAACATCTAAATCCATGCAAGGCGAATTTCCTTCACA 7956 37 100.0 39 ..................................... TAAAATGAATTCTTACGAGGAGGAATGCAATCACGAGCT 7880 37 100.0 39 ..................................... CTCGAAAATAAGTAGTCTCTAAACTCAAAATACGCATTT 7804 37 100.0 44 ..................................... TTATTCAAGATTTTACAGACAATCTCTATGGGCGATACACCTAT 7723 37 100.0 38 ..................................... ATTGATCGTCCTTGACGAGGCGCATATGCTCCCATCAA 7648 37 100.0 52 ..................................... TTAAAAACCTTTTGCATGTAAATTACATTCAAGCTGAATCGTATTTAGATAA 7559 37 100.0 46 ..................................... ATAATTTTCAGGAAGATAAACTGAACGACATCTAAGATTCTCGTAA 7476 37 100.0 38 ..................................... CAATTCGTATTTGAATGTGAGGATTGTCCCGTTATTGA 7401 37 100.0 38 ..................................... TTGTTCTTGCCAAGGAGTCTCCGAGTCGTATCCTACTT 7326 37 100.0 39 ..................................... TCGTTCACAAGAGAGAAATTATTAAACTCTGGATCAAAA 7250 37 100.0 37 ..................................... AATATATTTTGGAACGCATGTGCAATTGAACTCTTAA 7176 37 100.0 38 ..................................... TTTGAACTCAAAAAAATTGTTCCATCCTGAATCCCCTT 7101 37 100.0 41 ..................................... TACAAACTCCACGAATCTGATGTTAGATCTGTGTGGAACTT 7023 37 100.0 37 ..................................... GGTTTACACGGGGATTGATTATTCTTATTTATTAAGG 6949 37 100.0 41 ..................................... CTGTAAGCCTCGTCGAATTCCACATCATCACCAAATTCTAA 6871 37 100.0 39 ..................................... CACATGTTCCTCTAAGAGAACACCATTCCTTACAATTAT 6795 37 100.0 41 ..................................... TATTTGTTTGAAAACTACACTGATGAATCTGATGTGTATGT 6717 37 100.0 38 ..................................... ATAACTCTCAAACGACTCAAATCTTTAATATTTCCCTT 6642 37 100.0 42 ..................................... ACCGTAAGAACTAACAACGCTAAACTAAAGACGTGAAATAAA 6563 37 100.0 43 ..................................... TTTCGTCTTGATTGTTTAAGATATAATCCATGATAAAACTATT 6483 37 100.0 41 ..................................... TCCAATTAGCAATGATTTTCTCAGCCTTTTCGTCTCCAACA 6405 37 100.0 39 ..................................... CAATTGCTACTTGATCGCCTAATTTTTGCCAAAAATTCA 6329 37 100.0 39 ..................................... AGAAGTGAGGAACATGGCTACTTACATGACCAAATTAAA 6253 37 100.0 41 ..................................... TACCGTAGCGAACTAAGAAGTCCTTCCAGATGTGCTCGGAG 6175 37 100.0 38 ..................................... TCTCCGTAAGCTTGGATGTGAACTCACGAGACTCGGGG 6100 37 100.0 36 ..................................... TCTATTTAACTCGTCCTTAATCATTCCGCAAGCATC 6027 37 100.0 39 ..................................... AATTGGATTGTATAAACAATACAAAGAGAGTCGAGCGTA 5951 37 100.0 39 ..................................... GCAGGATTAGATTGAGATACCCAAAAATAAGTACCATCC 5875 37 100.0 42 ..................................... CTTGCGTTTCGGGAACAACGCTCATTTTACTCGTAGGGATTA 5796 37 100.0 36 ..................................... AGCTCAAAAGACTATATCGAAAGACGGGGCATAGAA 5723 37 100.0 38 ..................................... CAAATGTTATTATACCATCCATTTTACGCGTCACCTCT 5648 37 100.0 40 ..................................... TAGGGCTAAACGCTTGGAACGCTACGGGTCGAGTTTTAGT 5571 37 100.0 41 ..................................... CTCAATAAGAATAACCGCTTCAGTACCGCTCGCTCCTGTAA 5493 37 100.0 36 ..................................... AATGTAGCCAAACATGGGATTTGAGAGCGTTTTCAA 5420 37 100.0 41 ..................................... CTCTAATTCTGGAAGGGATTTAAATGCGTCGGTTTTCGTGC 5342 37 100.0 42 ..................................... TGTTATAAGAGAATTCAAGAAATTATCTTATCTAACAAAATA 5263 37 100.0 38 ..................................... AAATTTTTTACTTTAGATAACAAATCAAACAATTAAAA 5188 37 100.0 40 ..................................... TTCTTTATGCTCTCTATCTTTAGGGTTATTATCAATTTTA 5111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 74 37 100.0 40 ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Left flank : TATTATATATATATAAT # Right flank : TGCAATTGTATTTCAACCATGAGGAAAAAGAATCCAATTGTGGAACCAGTGTTTATAATTCAGAAAGAAGATTGAAATTGCAATTGTATTGCAACTCCATTTTAAATAACATTGGAAAGGAAACTATAAATGTTTTCTTTTAATGTTGCCACTAATTTTTTAAGGTTTTTGTTCATGCAAATTATAAAAGCAAACGATAT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATAGAATATAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 2645-2811 **** Predicted by CRISPRDetect 2.3 *** >JAHPYW010000385.1-MAG: Candidatus Thorarchaeota archaeon isolate LW55_85 k141_292051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2645 31 100.0 37 ............................... TGTAGGATGGAACTGGATTCTCTGCATCTGGATTCAA 2713 31 100.0 36 ............................... GTCAACATAAGTCTGTGGTGATGGCTGAGCAGGTGG 2780 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 100.0 37 GTTTGAATCAGACTAGAAATAGGGTTGAAAC # Left flank : CTCGTTCGCTCTCAGTACTAAGAGAGAAATCCCCTCAATAGATAGGCAAGCGGCTCAGTAGAATCAGGCGCCCATGATCCCTATTAGAATGAATCCTCGAAAAACCGTCCTCGGAAGCATAACCGGAGGTTCGCAGAAGCACCCTTCAATAACGACCTCCATAACACTTATCTCGGGAAAATGACATGAAAATAGCCACG # Right flank : A # Questionable array : NO Score: 4.53 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.34, 7:1.79, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCAGACTAGAAATAGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 57-420 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_101857_length_1566_cov_10.325226- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 57 29 100.0 37 ............................. TTGTAGAGTTCTCTCCGTGAATAATAATCTTCTTGCC 123 29 100.0 38 ............................. GCAGCAGATAGATACCAAGTTAAACCTCGTATGAACAC 190 29 100.0 39 ............................. TCAAGGAAAATTGCAACCACTAACAAAGTGTGAGATGGC 258 29 93.1 37 ...C..........T.............. TCAGGGAAATAGGCGTTGATTAGCGAGAAGAAGAAGC 324 28 89.7 39 ...T.T..................-.... TCGTCATTACCACAGACAATCTCCACTTCTCTTGCCTCC G [351] 392 28 86.2 0 A..C...............G.....-... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 94.8 38 TTTGTAATTAACTAGAAATAGATTGAAAC # Left flank : CAAGAAATAGATTGAAACTTAAGGACGAGACTTCATTGTCTACAAGCTCTTTGACAT # Right flank : AGATTAAAACTTCAGAGAAATTCAAAGCTTTACATTTCTAATACTTAAATTTTTTAATTTTTCACTAAAAACATCTTAATTTAAAGTGTTGGGATTTCTTACTGAATCTATTTTCATTGGAATAAAAAAAGGGGGGATAAAGTGTTAGAGGTGCAAAAACTTAATCTTCTTCTCTTCTGTCTTAAGGAATTTTTGTAAAA # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:1, 7:0.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAATTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 551-65 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_105009_length_563_cov_2.428899- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 551 36 94.4 35 ....................C..............G ATTTTATATGGTACCCAAGTCTGTGGACACAATGC 479 36 97.2 39 ....................C............... GAGAATATTTTCATTATCTTATCCATCGCAAGTATCGAA 403 36 100.0 38 .................................... GTTAGTCCACTGCCAATTGAATATCCTTGAGACTATCA 328 36 100.0 41 .................................... TCATAATATTCCTTTTTTACATCAAGAATAATAACTAAATT 250 36 100.0 39 .................................... CTTAACCAATCAATCGGAATTTCTTTTAGGTGTATTTGC 174 36 100.0 36 .................................... GAATTATATCGGGATTATCATCTTCCAGAAAGTTAA 102 36 94.4 0 ...........A........T............... | G [89] ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 98.0 38 GTAGCACAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CCGATCTATTAT # Right flank : TTATAATAATTTTCTCAAATAAATTCATAAATTCAACAGTCGCACAAAAAGTAGCTTCATAAAGA # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 15-273 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_105351_length_304_cov_4.576271- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 40 .................................... CCATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAAT 91 36 100.0 37 .................................... CAAAAAATTAGATGATATAAAAAGTGGGGATTATCCA 164 36 100.0 37 .................................... CAGAATAAAGTATCTCCCAAGGTATAATTAGCATATG 237 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Left flank : ATATTTTCATTACTG # Right flank : AGTTCAAATACTTCTCGAAACTTAGATAATT # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.89, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 363-24 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_133592_length_407_cov_1.771429- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 363 37 100.0 37 ..................................... TTTTAGTTTAGCTCCTAAATATTCTTAGGAAATAGAA 289 37 100.0 36 ..................................... GTTATATCTACGATTTGTTTCCCGTTAAACCTAATC 216 37 100.0 42 ..................................... TCCAACGCTTTCATGCCTTTTATATCCATCTCATTAGAAATA 137 37 100.0 39 ..................................... TATTTAAATGTTTACTTCGGAATTTTTGCCTTAAATGAT 61 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 39 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TAATAAAGGGGTATCGTCTAGTGGCCAAGGACTTCGGGCCTTGA # Right flank : TATATACACATTTAGTCCAAGGCA # Questionable array : NO Score: 7.53 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.73, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 55-390 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_184493_length_461_cov_2.227545- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 55 38 97.4 37 T..................................... TCACCAATAGTATAACCAGTGGTTTCCTCCAAATGTA 130 38 100.0 38 ...................................... CTAACCAAAAAAAGAAAAGGTGAGAATGTAGATATTTT 206 38 100.0 36 ...................................... TTAAGTTGGGAATGGACATCTATTAACCCATCTGCC 280 38 100.0 34 ...................................... ACTGGTACATATTCCCATCCCTCAATTGTAATAT 352 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 99.5 36 AGTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TACTAGAGAATTGAAATCTGTAAGAATTGTCATAGAGGTAGATAGACAAAATCTT # Right flank : ATAGATCCCATTGGAACATCAAAATATCCTCCAGCCTTGTTGCATAAAGGATCTCAACTACTAGAGAATTG # Questionable array : NO Score: 6.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:0.90, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 411-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_191644_length_423_cov_2.206081- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 411 38 100.0 38 ...................................... CATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAA 335 38 100.0 36 ...................................... CCAAATGTTTTTTAAACTTCTCTAATTCGGATATAA 261 38 100.0 35 ...................................... AGACCACGACATCTCGGACAACGAATTTTCTTTTT 188 38 97.4 35 A..................................... GGTAATCCGCATGCACCCGAGAATATTTTCATTAC 115 38 100.0 38 ...................................... CATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAA 39 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 99.6 37 TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAAC # Left flank : ATATTTTCATTA # Right flank : C # Questionable array : NO Score: 6.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.29, 7:0.83, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 520-36 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_249346_length_554_cov_3.079625- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 520 37 100.0 37 ..................................... GACCATTCTCCATCATCATCCTTAACTCTAAAATAGA 446 36 94.6 37 ......-..............T............... TTAATCGAAGCTTCAATATATTTATCCATAACTATTA C [438] 372 37 100.0 38 ..................................... TTCACTAAATTTTCAAATAATGTTTTAAACTGCAAATA 297 37 97.3 39 ........T............................ TCTGCTATAAGAAGCCCTGCGGGATCAAAATCCCCATAA 221 37 100.0 36 ..................................... ATTTTTTGAATTGAAAAAATAAAATTATCTTTACAG 148 37 97.3 38 ...A................................. ATGACTAAAGTACTCCAAGTGGTATCCATGTCATATTC 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.5 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CCATCTTTCATTATTGCATAGCATTCAATAACTT # Right flank : TTTTATTGCCGTATCTAATACTGTAAAAATAAGTTC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 75-338 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_251801_length_405_cov_1.262590- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 75 37 100.0 37 ..................................... TTAATTGAATTATGGGGTATACATATAACCACTCATA 149 37 100.0 38 ..................................... TAACTATTCCTGAAAATCCTAAAATCATTACGGTTAGC 224 37 100.0 39 ..................................... TTATCTTTATTTGGAGCAATATTTTTTGGAACGCATTTA 300 37 91.9 0 ............................A...TC... | T [327] ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.0 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : TTCCAAAAAATATTGCTCCAAATAAAGAAGATTGAAATTTAAATATCTGGTAATATTCTTTATATCTATACCTGG # Right flank : TTCTTTATGAAGCTATTGTTTGTGCTACGCTAACCGTACTGAATTTAGGCTTTTATGGATTAGATAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 630-76 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_27920_length_672_cov_2.875229- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 630 37 78.9 35 TCTT.-.G.T.T.......................... GGAATAGAACAGTGGGAAGAGGAAGGAGACTTAGC G [593] 557 38 100.0 36 ...................................... TTCCGACGGTAAGCATGTTAATTACTTGCGTATCTA 483 38 100.0 35 ...................................... TTTTTGATTAAAAATAAATGTAGCATAACAATTAC 410 38 100.0 35 ...................................... AAATAGAGGCACTTCGGGATATTTTTCTCTAATCT 337 38 100.0 37 ...................................... AGTCTACAAAAGGTTTCGGAATAGCATTTAAACCGTG 262 38 100.0 35 ...................................... GTAATTCCAGATATTGTAACACATATTAATCCAAT 189 38 97.4 37 .....................................G GAACTAAGTGATGAGGGTTGTGGTGTGCTTATAGCGA 114 38 97.4 0 A..................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 8 38 96.7 36 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAATT # Left flank : GGCATACGAGATTCCGAAACGTGACTGGAGTTCAGACGTGTG # Right flank : TAGGAATTAATATAAATATAAAGGAATTACAATTTCAATCTTCTTTATGAAGCTATTGAGATCGGAAGAGCACACG # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.29, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 638-381 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_58149_length_741_cov_5.967427- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 638 37 86.5 36 ......CA..C.A.A...................... AATAAGCAGCCTCGGTAATGGCAAGACCCTCACCAC 565 37 100.0 36 ..................................... TTTTAAACTGTAAAAGTTTCGTGAGGTTCACTTAGA 492 37 94.6 37 ....T.........A...................... CCAACGGTCTAGGTTGCGTCCCAAGATTCTCCATAAG 418 37 94.6 0 ...A..........A...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 93.9 37 GTAGCAACAAAATTGGCTTCATAAAGAAGATTGAAAG # Left flank : ACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTAGCTTCATAAAGAAGATTGAAATTTTTTACAATGATCTAAAATGTCTTTTTTAATTTCT # Right flank : GTAAAAGGAACATCATGATTAAAATATATTGAAAGTCAAAAAATGTCTCAGAATTCTTAATTAATACAATTATTTTCATTAAAAATTTAGGCAATATTGCAATAATTTTTAAAAATGTTGATGATTTAACTCAAAAATAATAAAATTTGATCTTTTTATTTACGATTGGGAAATTTGAAAATACTATAATTTTAAATATA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:-1.5, 6:1, 7:1.40, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTGGCTTCATAAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 45-607 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_69148_length_645_cov_1.729730- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 45 38 94.7 35 T.....................T............... TCTAATCAGATTAGATTGATAATATTTTTTCATTA 118 37 92.1 35 ....T........-........T............... ATTATGACAGCAATATAGTTCCTCTTTCGATTTAG C [129] 191 37 89.5 39 C...T........-........T............... TAACCTTCACCAATTCTTTCATAAGTTAATGTATCTTTA C [201] 268 38 92.1 36 ....T......C.A........................ ACCCAAGCATAATTTACATCCCTTAGATCGAGACTC 342 38 100.0 38 ...................................... TTACTTTATTGCATACACCATAAAAAGGACCTATTCTC 418 38 100.0 37 ...................................... ACAAATTCAGGTGTAGTGGTGCAATCGGTTGCTATAA 493 38 100.0 38 ...................................... TTACTTTATTGCATACACCATAAAAAGGACCTATTCTC 569 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 8 38 96.0 37 AGTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CATTAACTTATGAAAGAATTGCAGTTGATCGGTATTCTACTAACT # Right flank : AGAAAGGTTGTATAGGATGTTTAAGGCAATAGACTTTG # Questionable array : NO Score: 6.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.29, 7:0.73, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 592-40 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_75296_length_733_cov_2.851485- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 592 36 100.0 37 .................................... CATTGTATTCGGGTTTTTCTGTGCTCATCGTAATTTC 519 36 100.0 39 .................................... CGGCATCTCTAGATACTTACTTGTATCATATTCGCCCCA 444 36 100.0 38 .................................... CATGGAATACCACATTCACATTTTGGAGGCAAGTTTAT 370 36 100.0 39 .................................... GTTTCTAAAGTATGCGCATGGGGTTTCAATTATATCTTT 295 36 97.2 36 .....................T.............. GAAATGAATCGCATCTTTATTATTCACTCTAATTAA 223 36 97.2 37 .....................T.............. GCTATATTTTTGAGAAAAATAGGCAAATTATAAATAA 150 36 100.0 38 .................................... CGTTGAAGACATATGATAAACATAAATCGTATAATCAT 76 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.0 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : GTTTTTTTTTTTTTTTTTTTTTTTCAAGCAGAAGACGGCATACGAGATTCCGAAACGTGACTGGAGTTCAGACGTGTGCTATTCCGATCTCAAAGAAGATTGAAACTCATAACCTTTATTCTCCAATGAAAAACAAACATT # Right flank : ACGTTGAAGACATATGATAAACATAAATCGTATAATCATG # Questionable array : NO Score: 7.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.68, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 2949-6699 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_88689_length_7921_cov_5.513985- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2949 29 96.6 31 ............................A GCATGTTTTGGATTTTGAACTTGCGTGTTTC 3009 29 100.0 32 ............................. ACATCGTTTGTCCCCGAAAATGTGAATTTATC 3070 29 100.0 32 ............................. CATTGAAGTTCCCCCGAGTTCAATTTGTGAAA 3131 29 100.0 32 ............................. GGAAATTTAATAGAGATTGAGAGAGTGAAATT 3192 29 100.0 32 ............................. GGTTATCCCCTCATTTTCTACGGATTTAATAG 3253 29 100.0 32 ............................. TTATCTGCAGTGATTTGTAATTGAGCAACAAC 3314 29 100.0 32 ............................. GTGGTAAAATTTCAATATTTCCAAGCGTTTTA 3375 29 100.0 32 ............................. AAATTATATAAAGAAGTGAGGTTTCCTTAATG 3436 29 100.0 32 ............................. TAAGTCAATGAGATTTGTGGATACGTCTGATT 3497 29 100.0 32 ............................. AAAATTTAATTATCATTCTATACCTCGATGGC 3558 29 100.0 32 ............................. ATAAGAAGTGATAAATTATAGCAGAAAGGAAG 3619 29 100.0 32 ............................. GATAGATCGGTAAATGTATATTCGTCCAAGAC 3680 29 100.0 32 ............................. GGACAAGTCTATTATGTTGGGGAAGCAACCGA 3741 29 100.0 32 ............................. TATTTATGTGGTTTTCATACAGATTCAGTAAT 3802 29 100.0 32 ............................. TTTAAATTTGAGTAAATTATTGGGTAAAACTT 3863 29 100.0 32 ............................. TTAATAGTGGATTTCCAAAATGGAAGTGAATA 3924 29 100.0 32 ............................. TCTATTATATCGTTATCTGTTATTAAAATCAA 3985 29 100.0 32 ............................. GTGGTGGCGATGATTTTATCTCAAGCGCCAAG 4046 29 100.0 32 ............................. CAGACGGAAATCCATTACATCACGATAAATAT 4107 29 100.0 32 ............................. ACTATATGGAGATAAGTCTATCGAAATATCAA 4168 29 100.0 32 ............................. ATAATATCAAAAAAGAGAAATTCATTCTTAAA 4229 29 100.0 32 ............................. AATTTTCATTGTTTTGTATCTCACGACTTAGA 4290 29 100.0 32 ............................. AAAAACAAACATTATTCAATTTCGATGATTTA 4351 29 100.0 32 ............................. TAGACTGAGGTCTCTATAATCACAATTACCAC 4412 29 100.0 32 ............................. GGAAATGATAAAATTAAAGAATATTTACTGAG 4473 29 100.0 32 ............................. ATATTTTAATTCGAGTAGCAGGAAATGATGCT 4534 29 100.0 32 ............................. TAGATTATAAGACATATTCAAAATTAATTCAC 4595 29 96.6 32 ............................T ACTATATAGGATTGTTAGAGGAACTCCTAGAC 4656 29 100.0 32 ............................. TGATTAGTCTCATACTGAATAGCGTTATTCAC 4717 29 100.0 32 ............................. GATATAGAAGAGGTTTATGCTTGTGTTTCTTT 4778 29 100.0 32 ............................. TTCTAGCGGCATTTAGGGATCAACCTCTTCAA 4839 29 100.0 32 ............................. ATATTAATTTAATTGGTTTTAAAATAGGTGTA 4900 29 100.0 32 ............................. ATATTTTAGAGCATTATTTAGGAATATATTTA 4961 29 100.0 32 ............................. TATCAAGAGATTCTACTGTAATATCATGAGAA 5022 29 100.0 32 ............................. AGATCAAGAAACATTTATAGAACAATGGATCG 5083 29 100.0 32 ............................. GAGTTTTATCTTTTTTATATCGGTATAATCAA 5144 29 100.0 32 ............................. GATGTTATTATTCTTCCGAACTTTAAAAAACA 5205 29 100.0 32 ............................. TTCTATACTTTTTTTATCGTATATTTTCTTTA 5266 29 100.0 32 ............................. GATTTACAGAGATTCTTTAACATTGCAGATAC 5327 29 100.0 32 ............................. CAGCAATTGAAATGATGCTTACTCCAATACCT 5388 29 100.0 32 ............................. AATTCAATAAAACTTGGAGTGATTCTTAAAAT 5449 29 100.0 32 ............................. TTATGCTTTAGATTATTTACGTCGATTAGATT 5510 29 100.0 32 ............................. GAAACGTAAGGCAAAAGAGCCTAAGGATAAGG 5571 29 100.0 32 ............................. CATCCATTTCTATAATTCCAGGATATTTCCAA 5632 29 100.0 32 ............................. GACTTAATTGCGTCCCATGATTCTTTTGGAAC 5693 29 96.6 32 ............................A TACAAGAAATATTTAAACCTGGTCTTGCATAC 5754 29 100.0 32 ............................. GATGATGTAATTTTTGTTTCAGTTAGGGTGAT 5815 29 100.0 32 ............................. GAAGGAGTTGCCCAGTGGTGTAGGGCATTTGC 5876 29 100.0 32 ............................. AATAAAGTCTTCTGAATAAAAGAAACCAAAAT 5937 29 100.0 33 ............................. TAAAGGATTAATTAATCGACATTATCAATCAAA 5999 29 100.0 32 ............................. AGGAACCCTTTAGTTTTTTATCTTTTAAGTAC 6060 29 100.0 32 ............................. AATCATATTCTGAAATGGACTTGATAGTCAAA 6121 29 100.0 32 ............................. CATCTATATTTGGATTTCGACCATGTTATTTA 6182 29 100.0 32 ............................. ACTTTACATATTTACATGGTCCAATTGTAAGA 6243 29 100.0 32 ............................. TTTTATTCTATAAGGAAATAACTAAAGAGCAA 6304 29 100.0 32 ............................. TATCCACAAAAGCCTCCTGCATTAAATAATTC 6365 29 100.0 32 ............................. ATGTAATTTCTTTATTTACCAGACCATGTCGA 6426 29 100.0 32 ............................. AATTTGTTTTTAAAATAAAAAAGAGGTCAAAA 6487 29 100.0 32 ............................. ATTAAAACCGAGTTTTGTTTCTTTATCACATT 6548 29 100.0 32 ............................. GAACTAAAGGTAGAATATTGCGACATTTAGAA 6609 29 100.0 32 ............................. AAATATATTAGTGATAAACGACGTTTTACAGA 6670 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.8 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : TCTAACTCCCTTGTTTATGTATTTGCTACTTAATTCTAAGAAATTAGACTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGG # Right flank : ATAAATTGAGCAAGATTACTTTTACCAGAACCATTTTAAAATGATCTCTTTGAAGAAGCAACATAAAGCAAACCGAAAAATAGGAGAAGAATTAAAAATAAGTAAGGAGTCGGTCGGTTATTGCCTCAAAAAGTTCATGCTCGATTATAATAAATACAAGCATCCAGGTATAGCCCTACAAGAAATTAATGAAATGATAG # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:1, 7:1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428-13 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_458108_length_468_cov_1.313783- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 428 38 94.7 37 .....G................T............... TCCAGGCATATGTGCCCTGTGCCCGGGCATGAATATG 353 38 94.7 37 .....G................T............... TGAATAACCTTCTTGGAAGAACCAACCTGGACGGCAA 278 38 97.4 39 ............T......................... TTTCAACGGCCTCATTGGCAAAGCCCGCATCTACAACAG 201 38 100.0 36 ...................................... ATGACCATGTGGATAATTTGCTTGGCATTCCTTTTG 127 38 100.0 38 ...................................... TCAGGTATTTTTGTCAGATTAGGAATAGAACCGACATG 51 38 97.4 0 ...........A.......................... | ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 97.4 38 GTTTAATTCCCTCATTCCATTAAAACAAGGATTGAAAC # Left flank : TGAAACTTATTTTGTCTAATCCGGTCCGTGCTTTTGTTGT # Right flank : CAGCCCCTTTATA # Questionable array : NO Score: 6.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.29, 7:0.83, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTCCCTCATTCCATTAAAACAAGGATTGAAAC # Alternate repeat : GTTTAGTTCCCTCATTCCATTATAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 365-725 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_554345_length_782_cov_1.844275- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 365 31 100.0 35 ............................... AGTGACTTCTTAGTAGGCAAACATAGACATACAGT 431 31 100.0 34 ............................... AGGGAACCCTTCAGGAATTACGTGCATACGTATG 496 31 100.0 34 ............................... TAATAAGTTACATGAAGGAATGAGAAGGCTGACT 561 31 100.0 36 ............................... TTTAATTTGGTGTTCTCTATCTACTCTTTATATATA 628 31 96.8 35 A.............................. TACTTTAGCGATCCTAACACAGAGCAAGGTATACC 694 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 99.5 35 TGTTTCAATAGGACTAGTGTAGAATTGAAAT # Left flank : TAAGGGAACTTGAAACGACGAATATCGTCTCTGAGGTGAGACTGTTGAAGGGAAGCTATGGGCGTTGAGAAGAGCAAGGTTTCAAGCATCATCTAGTCAACCTTTATAAATGGGGTGCAACACCGGGGGTTGACTTTTACACCCCCATAAAAAAGGTTAAATTCATCCTCCACTAATAAAAATAAGGTAAACAAGGGGTC # Right flank : GTTACGGAACTTGAGAGAGAAGAAAGCGAAGCTCCGTTTCAATAGGACTAGTGTAGA # Questionable array : NO Score: 7.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.34, 7:0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCAATAGGACTAGTGTAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 33-367 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_122628_length_391_cov_1.409091- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 100.0 37 ..................................... AATTTATCAGCACATTTTAACTTGTCCAGTATAATAT 107 37 100.0 38 ..................................... AATAGAAGGATATGCAACACCCTTAAACACTGTCCAAG 182 37 100.0 37 ..................................... GAATATCTATCGCTTTTAATAAAGAGCTTAGCTAATA 256 37 100.0 37 ..................................... TTAATTCTCGTTTCGGCTACCTCGCCATTAAATATTT 330 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 38 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TCTTTGGAATGATTCCAGCTTTTTCCCAAGCTG # Right flank : GAAATTAGCCCAAGCCATTAAAAT # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.93, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 490-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_149153_length_524_cov_3.423174- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 490 37 100.0 38 ..................................... TAGTTATCAGCTGGCCTTTGGAACTCTTAAGGTTAATT 415 37 100.0 40 ..................................... TTCTTCATGAAACCCCAAGCGTGTCATATATTCGGTAAGT 338 37 100.0 37 ..................................... TCATTACAACCATAATCCTTCACTTATGCCTAAAGAA 264 37 100.0 37 ..................................... CTATGGTAATTATTACTGTATCAATTACATAATTACC 190 37 100.0 40 ..................................... AAGTTAATGTAGTAGATCCATATTTATTTATGTTTTCAAG 113 37 100.0 38 ..................................... TTTTAAATCTCTAAAATAATAACTATTTAGTGAAAAAA 38 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 38 GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Left flank : GATCTCAAAAGGGAAAAACGGGAGAAATTGGCTC # Right flank : T # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 52-279 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_154648_length_413_cov_0.842657- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 52 28 96.4 38 ...T........................ CGCTTCCAGCAAGGCCAATTCAGGCGTTCATATCTTGT 118 28 100.0 39 ............................ TCATCAACTAAATCGTAGTAAGGTGCAATAGTTCTAAGT 185 28 100.0 38 ............................ ACGCAAAAGCTCACTGTATTAAAATCTATTAAACCGGT 251 27 78.6 0 ...............TC.T.-G.....A | C [266] ========== ====== ====== ====== ============================ ======================================= ================== 4 28 93.8 39 TTTATTTTAACTAGAAATAGATTGAAAC # Left flank : GTGACGGTAAAAAACGAATAAAAACGCAATTTTTGAGGACTACAGTACCTGT # Right flank : AAGAATGGAAACGTTTAAATAGGTAGACTTCACATTTTTAAATGAGTTAAGTTTCGACCGTGATCGATAGAGGTGACGGTAAAAAACGAATAAAAACGCAATTTTTGAGGACTACAGTACCTGTTTTATTTTAA # Questionable array : NO Score: 6.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:1, 7:0.61, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 59-625 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_158971_length_923_cov_3.115578- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 59 37 100.0 38 ..................................... ACAAGAAAAGAATTAAATGTGTCTGCGGACATGAATGG 134 37 100.0 37 ..................................... TCTTTTTCTTCTGCAGTGTCAGCTTTCTTATAGTTGA 208 37 100.0 39 ..................................... TCTCTATTATCTATTTAGGGCACGATAGTCAAAGTTATG 284 37 100.0 40 ..................................... AGTCAAATTGTCGATTGGACAGGCGGAGAAAATAACGCTG 361 37 100.0 39 ..................................... TTGTATTCGCTTGGTTTGGATTCTGTCCATTGAATGATT 437 37 100.0 38 ..................................... TTCAAGAGTTTAGTCTTTAAACTTGCGTTTACGGTTGA 512 37 100.0 39 ..................................... GCGTGGTAAGTTCAGTTTTGAATTCTTCTTCGGTTGTAA 588 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TACTAGAGAATTGAAATACAAGATTTAAGCGTTCTGCTCAACTATATTGGCTTAATAAG # Right flank : TAATAATCGATTAATTTCATAAACTATATAAGAAATGAGAAGTTGGATAATTCTATGATTCTCATTTATCAAATAACTCTTATTATCTAAAATTCTATCTCACAATTTTCTTGAAAAAATGAATTTATCTTCCATTAGTAGAAGATACTTATTTTCTTTTTATAAGGCTTAAAATCAAACTATTCTCTATATTAAGCTAA # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 37-401 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_171353_length_402_cov_3.065455- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 35 ............................... CCTTCAAAAATCTAGCTACCGCACGAAGCTTCAAT C [38] 104 31 100.0 37 ............................... GTGTTAATGTTTCCTGAACTATCTTTAGCTATAATAG 172 31 100.0 35 ............................... ATTTTTTTCCTTGTCTTATTTAATCTTGTTTAAAC 238 31 100.0 36 ............................... TTGTTTCTAAAGCCCCACTTTTCCCATTCATTTTTT 305 31 100.0 34 ............................... CCTCTTCCATCGTCATAAAAGACAGAAGAAAACC 370 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 100.0 36 TGTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : GAAACAAGTTTCAATCTATTTCTACAGAAATATCCCT # Right flank : C # Questionable array : NO Score: 7.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.34, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 300-35 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_175902_length_968_cov_1.701546- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 300 37 100.0 38 ..................................... ATGCCTAGAATATTCTTTGATAGCGACGGAAACCGACA 225 37 100.0 40 ..................................... ATCATGTGCAAGATTGCTTTTTCAAATACTTTAATTAATA 148 37 100.0 39 ..................................... CATTGATAATTCTGATACAACCAGCTATAAATCCTTCTT 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : AAGCAAATTCTAGAAACAGAAATGTTGCCAGAAGAAACTGATCAAGAAAGAAAATGTGTTGACTGCGAATATAAGAATATATGTCAACCAAGCAACTATTAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAGGAGAAAATAAGAACGAGTCTAATAGTGAAATATGCAAGAATTTAGCTCGG # Right flank : TTCTAAGCACTATATTTATTATGCTCTATACACAA # Questionable array : NO Score: 7.09 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 628-451 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_49890_length_833_cov_3.339943- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 628 29 100.0 45 ............................. AATGTAACGAAATAACACCAGAAATCGGCTTGAAACTTTTAGAAG 554 29 100.0 45 ............................. TTTGTAACTCAGAAAAAGACGAATGACTAAAGAACAAATACTTTT 480 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ============================================= ================== 3 29 98.9 46 GTTACCACCTCCTCTTTTGACGGAACTAG # Left flank : TTCAAGCCCAAGAAAGAAGATTAGAATCTCTCTTGGGAAATGGGTGAAGAAGAACCTGCCTGATAGATCCTGATAGAATATTCTTTCAAAAGTCTAAAAGAATATGAGATGCTGATAGCAATATTATAGCTTAAACCTAAGAATTCGCAAATAAAAATCGTTTTTGTTATATAATTCTGATTCCTTGATTAATCGTATTG # Right flank : TTTGTAACCGCAAAGAAATTCCTTCTAGTCTTTGTTTTTTCCATTTTTCTTTTTCTTATCCTTTTTTTTTCTTCTTTCTTCTTTTTTTTCTTTATTAACCTTTTCTTTTTTTCTTCTCTTTGCTTATCTAAAACTTGATATATTTCTTTTCTTTTTCCATTTTATGTCTCCTTCTTCTTCCTCTTCTTCGTTTTTTTCTC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.10, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCACCTCCTCTTTTGACGGAACTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16-581 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_67692_length_705_cov_2.314879- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 39 ..................................... CTTTTTAGGATATTCTTCTGCTAAATTAGGGGTTTCATG 92 37 97.3 38 .......G............................. TAATTGACCTCATTAAGGGTATATAAGTCTTCTAAAAG 167 37 100.0 39 ..................................... GTTGCATAATTATTTCAGAGATAAGAAAAGCAACACTAA 243 37 100.0 39 ..................................... TAAACGCTCTTTTTCTATTGTAGTATAATCTATCATTAA 319 37 100.0 39 ..................................... ACCGTCTATAACTTCATACTCTACTTTTGAATACCTATC 395 37 100.0 38 ..................................... ATTGCCCCTTTCTTCGCTAAAAAGGTTCAACACTATGC 470 37 100.0 37 ..................................... ATTCGCGGGCCAGCCACTGCAGCACTTGCAGCTGCAG 544 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.7 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : ATAGAGAGACTTTTGG # Right flank : ATATGCACCAAGAGGCGAAACGTTCTGCTCTGGTGACGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAACAAAAATAAGAA # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 275-2 **** Predicted by CRISPRDetect 2.3 *** >lcl|1H_NODE_272570_length_418_cov_0.852234- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275 29 100.0 32 ............................. GATGCTAACGGAGATGTGGTTTCGGGGATTGC 214 29 100.0 32 ............................. GTGATGGGGCGGCTGAATATAATTATGAAGAC 153 29 100.0 32 ............................. TTGTCGGTCGCGGCATCGCCGAGGAAGCCGGA 92 29 100.0 32 ............................. GAATCTGCACGAGTAAAAATCTGGAGAATCCG 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ATTGTCCCCACACGCGTGGGGGTGAACCG # Left flank : AAAAGAAGGCGGTTGTGTGATGATCTATTCGAGCGATGGAGAACAAGGATTTCGGATACGCAGTTGGGGCCGAACCGCTCGCTCCATCAAGGAATTCGAAGGACTATTCCTCGTCCAAGTGTCATAAGTCTATAAAAAAGCAG # Right flank : GA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 337-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_31071_length_350_cov_7.461883- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 337 38 100.0 37 ...................................... GAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 262 38 100.0 36 ...................................... TGTAAAAGTTGATGTAATTTAGTATGTCGATGAATT 188 38 100.0 36 ...................................... GAGCTCCTACTAATTTAGCAGTGCCGAGGTCGGTAC 114 38 100.0 37 ...................................... GAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 39 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 100.0 37 GTAACAATAAAATATCCAACAAAATAAGGATTGAAATT # Left flank : GCCGAGGTCGGTA # Right flank : T # Questionable array : NO Score: 4.08 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.29, 7:1.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.95%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 357-105 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_54737_length_370_cov_2.411523- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 357 36 100.0 39 .................................... TTGAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 282 36 100.0 38 .................................... TTAACATCCACGACCAGCTAAATATAATAAATCTATGT 208 36 97.2 29 ........................C........... CTACATGATAAGTTTTTTAGTAGGTTTTT 143 36 80.6 0 ...G...........T...T.......CT.C.C... | AC [117] ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 94.4 36 GTAACAATAAAATATCCAACAAAATAAGGATTGAAA # Left flank : GCCGAGGTCGGTA # Right flank : ATAAGCACTTTTGTTGGATATTTTATTGTTACACATAGATTTATTATATTTAGCTGGTCGTGGATGTTAATTTCAATCCTTATTTTGTTGGATATTTTATTGTTA # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:1, 7:0.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 389-54 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_56702_length_407_cov_0.885714- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 389 38 100.0 36 ...................................... CCGTTAATTTTGCTAAATAATTATTCTCGGTTTTAG 315 38 100.0 36 ...................................... AATTTTCGTTTCCAAATCAGTTATTTTTTTGTTTTG 241 38 97.4 37 ....................................A. GTTTTAGCTAACGACGCTGCAATTGACGAGTTAGTAG 166 38 100.0 36 ...................................... AATGCAGGGTCTTTAAATTCTGAAATCATTCCGTTG 92 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 99.5 36 TAACAATAAAATATCCAACAAAATAAGGATTGAAATTT # Left flank : CATATTACAGCGTTTTTT # Right flank : TGCTACCACCAAATTTCGGTATCGGACCGATGTTAACGTAACAATAAAATATCC # Questionable array : NO Score: 4.33 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.29, 7:1.27, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACAATAAAATATCCAACAAAATAAGGATTGAAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.49%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 73-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_58826_length_474_cov_2.161383- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 73 37 100.0 38 ..................................... TTCTATAGGTCTCTATTATGGATCCAAATTCCCCTGTA 148 37 100.0 39 ..................................... CATTCTTCCACGACACGATATATTACTTCCATTTTTGTA 224 37 100.0 38 ..................................... AAGAAATTATTTTAAATCACCATTTTTATCATTTTTCT 299 37 100.0 36 ..................................... AGAGCTTTTTGTTATTTATCGCTATTAAAATGCGTT 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTAGCAATAAAATATCCAATAAAATAAGGATTGAAAT # Left flank : CAACGAATAAATAATCGCATCTTAACAAAATTTAAATAGGGCTTTAGTGTATTATATTATTAAAAAATTAAGG # Right flank : ACACAAGTTTGGAAACTTTCAATCCTTATTTTATTGGATATTTTATTGCTACCTTAATTTTTTAA # Questionable array : NO Score: 7.54 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.74, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCAATAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 15-581 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_69204_length_665_cov_5.630112- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 100.0 39 .................................... TTCAAATTGTCTTTTACCACTCGAACAAATTCTTGTTTT T [39] 91 36 100.0 39 .................................... TTAGTGTAAGAGTCTGGTCTATAATCTCCCCCATATCTG C [115] 167 36 100.0 40 .................................... TTTTCCTTATTGTATTCAGCTTTATGTTTGGCAAATTGTT T [191] 244 35 91.7 40 ..................AC............-... TGAACGATTAACAGCATGCAACTCAGCATAGCCAACCGAA C [268] 320 36 94.4 38 ...A..............A................. GTTTTTAAGTTAGCAACTCTAAATTTATACCAATTTAA C [344] 395 36 91.7 37 ...A............T.A................. TACTTCTGGTCTAACACGAACGCTTCGAACTGCTTCC 468 36 100.0 41 .................................... TTAAATCTTGGCTTTTTTGATATGGTTTTGTACCTTCTAAA T [492] 546 35 69.4 0 ...A...........T..A...G.TC...-A..GCA | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 93.4 39 GTAGCAATAAAATATCCACTAAAAAAGGATTGAAAT # Left flank : TTAAAAAATTAAGGG # Right flank : ACGTCTGAACTCCAGTCACACTGATATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAACGAAATTCAGGCACACCGAGAC # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCACTAAAAAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 595-853 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_73850_length_878_cov_4.181092- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 595 37 100.0 37 ..................................... TAAATAAAAGCCCAAGTTTCTCGTCTCAATATATTTC 669 37 100.0 37 ..................................... TCCCATGTTATTCCTGTTGATTCACTTGTTTCTACAT 743 37 100.0 36 ..................................... ACTATAAGAACAATTATTACGATCGTAATTATTATT 816 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 40 GTAACAATAAAATATCCAACAAAATAAGGATTGAAAT # Left flank : TTACATCAACTCACGCGCCAGAAGATACGAAAAAGAATTCTCGAACGATAGACCTCAACTCGAGAAAAAATCGTATAGAATCCTTAGAACTCGCTCAAAAATCAAGAGAATAGAAATAAGGCGCCTACAACGAATTAATAATTGCTCCTCAACAAGATTTAAATAGTGCCTTAGCGTATTATATTACTAAAAAATTAAGG # Right flank : TGAGTAGTTAAATAGATTATTTCAT # Questionable array : NO Score: 7.89 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 291-23 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_84009_length_400_cov_0.908425- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 291 24 100.0 37 ........................ TTTTTTTTCCAGCGCCTCGATCCTTTCTAATACGTAT 230 24 100.0 37 ........................ TTCTGTCCTTGTTTTCTTACAATTGATATGAATGTAT 169 24 95.8 37 .........T.............. GTTACAAGTACAAACATCGTCACAAGTACAAATGTAA 108 24 95.8 37 ......T................. ATTACAAGTACAAACATCGTCACAAGTACAAACGTAT 47 24 91.7 0 ........A...T........... | ========== ====== ====== ====== ======================== ===================================== ================== 5 24 96.7 37 TATCCACGCGAACAAGGATTGAAT # Left flank : ATTATTTTTTAAATTTTTATTCTCTAATCTTTTTAAAGTAGAAATGGTTTCTATAATAAATAGATAAAATTTGCTTGAAGTCCTCAAAAACGAAGAGAAAAGTAGTGTA # Right flank : TTTAAATGTATCCATTAACCATG # Questionable array : NO Score: 6.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:1.04, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCACGCGAACAAGGATTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 305-32 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_145907_length_767_cov_1.381250- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 305 29 100.0 32 ............................. TCCTTATGAACTCTTAACATCTCAATTTCATT 244 29 100.0 32 ............................. TTGATATTGGAAGAAAAAATCAGAATTAAATC 183 29 100.0 32 ............................. TAAGTGGGAGTCCCTGAAACTATAATCTTTAA 122 29 100.0 32 ............................. TAAAAATAAGTTCTTAGAACATTAATTTAATC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CTAACTCCCTTGTTTATGTATTTGCTACTTAATTCTAAGAAATTAGTCTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGGT # Right flank : GGATGTATGCAGGGGAATGTCTTAACTGTGGA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 608-419 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_452507_length_668_cov_0.905730- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 608 37 100.0 39 ..................................... GAAGACCCGCCAGTTCCATATAATCTGATAAAAATCGCA 532 37 97.3 39 ...........................T......... TTTTGTTCGATGCAGAACGAATGTTTGCTATAAGTTCAA 456 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 99.1 40 GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Left flank : CTCACTTATTAGAGAATTGAAATTTTTGAATTGTTGATTATATGAACGTTGAAGCAAACT # Right flank : CATATGTTTGTGAATCTAATCAAATTTGTATATTTGTATGGAATTTGTTTAAACAGAAACTAATAAATGCAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCAATTAATTATTATCAGCTCCTGTTTTAATCTTAATATAGAATTAAATAATGG # Questionable array : NO Score: 6.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.60, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 441-698 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_513586_length_724_cov_1.453936- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 441 37 100.0 37 ..................................... TCGATTTATTTTGCTATTCAATTCTGACCATCGTTTC 515 37 100.0 35 ..................................... GACCATAAGACGCCAATATTAACGTTAAACTGCAT 587 37 100.0 37 ..................................... TAATAAAGTCCAGCTCCCGTATTAGTCAAATTATAAA 661 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 40 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAAAATTCAAAAGCGTTAAGATTCAAGTTCATGTCTAAAATACTAAAAATTAATATTATCTTCCTAAAATATTCTATTAAATTGTTACTTTCTATTTTTTAAATAAAAATAAATCTTAATTTAATCGATTAAAATATTTACTAAAAGATTGAAAAAAAATATATATTTGTTCCTACATTATTATAATATAATATATAAAA # Right flank : ATCTGTTCCCATTCTTTAAAATAACC # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.13, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 357-22 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_553004_length_412_cov_1.305263- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 357 29 96.6 33 .........................T... GAATGAAAAAATGGATGAAATCAGCATTTTATA 295 29 100.0 32 ............................. AAAATCCCTAAAATTCCGCTTTTACATACGGG 234 29 100.0 32 ............................. GTAGTGAATGGGTTAAAGGCGTTGCTCAATTA 173 29 100.0 32 ............................. TAGAATTTAATGCTGATCCGAAAGCTTCTGCC 112 29 100.0 32 ............................. TACAATAACAGATTTACCTAAGAATATTGTCG 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 ATTATCCCCACACACGTGGGGGTGAACCG # Left flank : CCCCACACACGTGGGGGTGAACCGGTGGTTTACGTGGTCTTGCGTTGGCTGAGTT # Right flank : GTATAAAGAAGATGTTTTTAAA # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:1, 7:1.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCCCCACACACGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 613-53 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_560555_length_672_cov_1.339450- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 613 37 100.0 39 ..................................... ATTTTTTTATCCAATTCACTGTCTATACTCTGTTCTTTT 537 37 100.0 37 ..................................... GGTTCATGAGAGCCTGAAATACCGCCCTCTTCCGAAG 463 37 97.3 39 ...........T......................... AAATCCTTTCTGGATTCATTGATATAAAATTTAACTAAA 387 37 100.0 36 ..................................... AACTGGATATCGCATTTTCCACATTTAAAGTCTAAT 314 37 100.0 36 ..................................... TAGTATGTTTGAAAGGCAATATCTAATATTCTCGTT 241 37 100.0 39 ..................................... TCACCCATGCTAACATCAGCACCAGCACCCATAAAAAAA 165 37 100.0 38 ..................................... CGGGTATATTTAGGCTGTTAAAACAAGAATTATTCAAG 90 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.7 38 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AGCTTCAAAAAGAAGATTGAAACGCTTTCATCGCTGTTTTCTTAACGCCTATAATACAA # Right flank : CTGAATCAGCTTATCAATCATGTCAATATCGTCATGTGTCACAGAATAAATAG # Questionable array : NO Score: 7.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 983-1212 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_562115_length_1228_cov_0.883742- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 983 30 96.7 36 ........A..................... GAGGATAACCAGCACTGAATTCATCTTTACCTACTG 1049 30 100.0 37 .............................. ATTTTAATACCTCGTACATTTATTATCTTTGTTGCTT 1116 30 100.0 36 .............................. TAAAATAAGTGCATTTGTTTATTTCATCTAAAACAA 1182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : AATCAATACAATAAAAATTATTGTGGGGTATGTTCTTTTGAAGAATATTGTTGGTTTGAATAAGCTAACGATGAAAAGAAGAATAGAAACGTTTAAATAGGTAGACTTCACATTTATAAATGAGTTAAATTTCGACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAAGACTACAGTACCT # Right flank : AATCAACATTATCATG # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 335-68 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_603715_length_586_cov_2.374728- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 335 37 100.0 41 ..................................... CATGGACTGTTTGGTCTATTTTCTCCAGGTCTTGGAGCATG 257 37 100.0 40 ..................................... ATACATAAGAAAGGTAACTCATCTAACTTGTTACTTATTT 180 37 100.0 38 ..................................... TCGTAGAATTCATAATTTCCGGCGTTATCTTTTTCGAC 105 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 40 GTTACAAAAGCTAAAGCTCAATTAAGAGTATTGAAAT # Left flank : CTTTGCTGATCCTGACACCCACCAAAATCACTCTAAAAAGCAGTAAGGAGAAGCCTTCTTTTTGTTCTTTTTCTTTCTAAAACTGTTGGGTCTTTTTAAAGTCTGTACCACTTTGGTCACCCGCCAACTTCACCCTTAGAAAAATCCTTCTAGACACATTAGGGTAACATTTTTAGCATCTAGGCGTCTAAGAGTTGTCA # Right flank : TTTTTTTGATTAATTTATTGACAGCCAATATAGTGATGTTACAAAAGCTAAAGCTCAATTAAGAGTAT # Questionable array : NO Score: 7.02 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.42, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTAAGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 51-388 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_611793_length_395_cov_0.813433- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 51 37 100.0 37 ..................................... ATTGCTACTTTTTGAGGTTTCCACTCTGAATATAAGT 125 37 94.6 40 ..........C....A..................... TTTGTTATATTTTTAAATAAATGAGTTGGTAGATAAAATT 202 37 100.0 38 ..................................... TAATAAAGTTGTGCTTGAATCCAATCTATCACTTTATC 277 37 94.6 37 ...........C.......G................. ATTGTTAGCCAGGGAATTGTATTGTTATGAGTAATTG 351 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 97.3 38 GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Left flank : AGGGATTGAAACTTCGCTGTCTTCATCCCAAAGTGATATTCTCCATACCAG # Right flank : TATTTTT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:1, 7:0.75, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 456-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_646524_length_509_cov_2.782723- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456 29 100.0 32 ............................. TCTATTACATCGTTATGAGATGCAAAATTAAA 395 29 100.0 32 ............................. CTGGTATTATCGGAATCATCTTGAATGTGGAG 334 29 100.0 32 ............................. GTAAGTTAAATGGGAAGAGATGCAAAATTAAA 273 29 100.0 32 ............................. TATGGATCTAATCCTGTCATATTAAAACCTTC 212 29 100.0 32 ............................. GAGATATTCAGCAAAACCATTCTCATAATATA 151 29 100.0 32 ............................. GAACTAATAAACTATATAAAACAGTTGATTTC 90 29 100.0 32 ............................. ACATCCAATAAAATTCAATTGTTCCGAATGTT 29 28 93.1 0 ....................T.......- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CCACACACGTGGGGGTGTACCGGGAAACTTGGATATTATAGAGTTTAATATTA # Right flank : C # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 291-27 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_736698_length_591_cov_2.137931- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 291 37 100.0 38 ..................................... TATATTGATCCATAATTATGTGAAAGATGATCAAACAA 216 37 100.0 39 ..................................... AAGTATATGATACCTATACTATATGGTGAGTCATTATGA 140 37 100.0 39 ..................................... TTCAAATTTTTGTAATTTTATATCATTAATAAATCTAGT 64 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 100.0 39 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : CTTTGCTGATCATGACACCCGCCAAGATTGCTCTGAAAAGCAGTTAGGAGAAACCTTCTTTTTGTTCTTTTTCTTTCTGAAACTGTCGAGTCTTTTTAAAGTCTGTACCACTTTGGTTACCCACCAACTTCACCCTTAGAAAAATCCTTCTAGGCGCGTGAGGGCAACATTTTTAGCATCTAGATGTCTAAGAGCTGTCA # Right flank : TAGAGGGTGATAACAAACGATGGTATT # Questionable array : NO Score: 7.13 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.53, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 391-134 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_792075_length_426_cov_0.414716- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 391 38 100.0 35 ...................................... TTTCATCCGATTCTGTATGTATCCTGTCCTGCAAG 318 38 100.0 35 ...................................... CCCGGATAAGCACTTCTGAGTAGACCGTCTGGTAA 245 38 100.0 35 ...................................... ATGCCATATCGCACTAAATAGAGAGAGATTGTAAT 172 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 35 CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAACT # Left flank : ATATCAACGGTGAAGCAGCGGGAGCGGAAAGAGAA # Right flank : CAAAAACGTATCACTTCATGGGATTTTGGGGAGACGTTGCAATGATGACCCGCCTAAACGGCTTGTCAGGCGTTTCGACCTTGATTATATCGCTTTTCCAGTACATCATATCTTATCCGAAAGACAAGCTCCTG # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.29, 7:1.05, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 17-892 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_806801_length_905_cov_1.539846- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 39 ..................................... TCGAGTAGTCGCATTTCTAATAAAGAATATTTATCAATT 93 37 97.3 40 ..................................G.. TAATAAGATTATTATTATAATAATAGATAATAATGTTTTA 170 37 100.0 39 ..................................... AGTGCCATATTGTATATTGCTAGAAATATTCATGTTAAA 246 37 100.0 40 ..................................... CTTAAGGAAATTTCAAGAATATCTTGATGAGTGTCAATTG 323 37 100.0 39 ..................................... TTGGACAATTTGCAAAATTGGGAGATAAGGCAAAATCAA 399 37 100.0 40 ..................................... CTTGCGAAAAACAGTTTTATGTATTTAAATATCATTCTTA 476 37 100.0 38 ..................................... TATCTTCTGGATTGACTGTTTGAGTCATAGTATTTTTT 551 37 100.0 41 ..................................... ATCATCTTCTTTATCACCTTCTGTTAGTTTTTCTATTAGTA 629 37 100.0 39 ..................................... TGAATCAAAGGTATTGGTGCTTCTGAATAATCTTCAAGT 705 37 100.0 39 ..................................... GTGTCTGCTGTAACATCGTGGTCATGTGCTGCTAAAGCA 781 37 100.0 37 ..................................... TGACTTCTTGCAAGTTCTAACATTTGTTCTTTTGTAA 855 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.8 39 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : TTTCCAAATCACTTAAG # Right flank : CAGTTGCTGCACG # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 14-730 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_106264_length_743_cov_3.146104- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 100.0 39 ..................................... TTATTCACAATAACTTTTGCAAGAACTGCTTTCTGAGTC 90 37 100.0 37 ..................................... TACAAAATATTTTTATTAATTCATTTAATTGTCTAAA 164 37 100.0 36 ..................................... ATCACTTGTCTTTCAATATATTCTTTATCATCAATT 237 37 100.0 40 ..................................... TTTCTTAATCCTTTATTTTTAATATTAAAATTATCAATTA 314 37 97.3 37 .....................G............... AAATAACTGAATATTGTTAGGCAAATATCAAACATTA 388 37 100.0 37 ..................................... TTTATAAAATCATACATAACCAACTCTCCTGGAGTTA 462 37 100.0 41 ..................................... TTTATAAGTCCATCTGCTGCTATAAGCATTACATCTAAATG 540 37 100.0 38 ..................................... AAAGGAAAATCAATTATACCACTTGGATTAATAGATTC 615 37 100.0 41 ..................................... TTTATAAGTCCATCTGCTGCTATAAGCATTACATCTAAATG 693 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.7 39 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : AGTGGAGCTTCACG # Right flank : AAGATCGGAAGAG # Questionable array : NO Score: 7.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 8-468 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_151952_length_484_cov_1.089636- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 32 ............................. GGAATCGCACGACCTGTTGGAGTCATCGAAGA 69 29 96.6 32 ..........T.................. TGGGATATCCACTTTGTCGAAACCAAACAGAA 130 29 100.0 32 ............................. TGTAACTTGGATCTATGAAGAATGTCAAAGGC 191 29 100.0 32 ............................. AAAGATGGCAAGGTCTACAACGCCAAGTTGCA 252 29 100.0 32 ............................. TTGTAAAACAATTTGAAGAAGTGGAGGACAAC 313 29 100.0 31 ............................. CAAATCTGCAAAACACTTTTGAATCAGTTTC 373 29 100.0 37 ............................. GTATATATAAAATGCACTATAAATGTCATTTTTATTT 439 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.6 33 ATTGTCCCCACGCGAGTGGGGGTGAACCG # Left flank : TTACCCCA # Right flank : CCGAGTATATTTCATT # Questionable array : NO Score: 7.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCGAGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-400 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_159417_length_1498_cov_2.052516- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 ................T........... TTTACATATGACGATAGACAAATATTAATTATT 68 28 100.0 33 ............................ ATGTCAATATTCGGAAAAAACGGAAATGGTCAA 129 28 100.0 33 ............................ GATATGTATTGGATAAGACATATAGATATCCCA 190 28 100.0 33 ............................ ATGGTATTAGCAAATATATGGTTTCCCGATGAA 251 28 92.9 33 ................GA.......... GGCTATCATCCGTTCAAACTACCGAGTATTTAC 312 28 96.4 32 ................G........... TTACTTATTTTGACTGGAAGAAACCTGATGGA 372 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 33 ATTCAATCCTTGTTCGCGTGGATAATAC # Left flank : AACAAAA # Right flank : ACTACTTTTTTCTTCGTTTTTGAGGACTTCAAGCAAATTTTATCTCTATAGTATAGAAACCGTTTCTACTATAAATAGGTTAGAGAGTAAAATATAAAAATCTTACCTTTACTGACACTTTTTTTCCCTATTTATTGGATTCTTTCAAAGAAAGTATTTCGTTCGAATCCATTCAATCCTTGTTCGCGTGGATAATACAT # Questionable array : NO Score: 4.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:1, 7:0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATCCTTGTTCGCGTGGATAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 380-206 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_182134_length_379_cov_4.214286- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 380 26 70.3 37 -----------.......................... CATCGTAATGCCGAGAAGTCGATAGAAACCCTTCGAG 317 37 100.0 37 ..................................... TGTAATACTTGTAAGTTTTTATATCCACTATTGGATA 243 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 90.1 38 GTCACAGAGTAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : | # Right flank : CCCTTCCAGCAGTCTCGTAAAGAACTCTCGTCGATTAAGCTATAAAATTTCAATTTTAAAAGACTGTTGATAAAATATTTTTAAGTGGAAAGATAAAAATATTTAAAGTCTGAACCTATGTTATCATTAAACTAATTTCCAATCAAATATTTTTTCATTATTCAGCTGAATTTTTAAATGGTGAAATTTACAAATAATTA # Questionable array : NO Score: 7.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.50, 5:0, 6:1, 7:1.56, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAGTAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 354-61 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_198644_length_381_cov_2.929134- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 354 30 100.0 34 .............................. ATCTTAAATAGCGCCTTTAGAAGCTCATCTTCGA 290 30 100.0 36 .............................. TCGTAGGAGACTATCATAACAGGTTTTTCGTTACAT 224 30 96.7 36 .....A........................ TATATTGGAGCGTGGGTAAATGTGATTCTTGCTTGG 158 30 100.0 37 .............................. GGGAAGTACCGATATCATCTTTTTCAGCTTTTTTCTT 91 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTTTTGTTTTAACTAGAAATAGATTGAAAC # Left flank : ACCCCTTCTCGTGGGGAAAACGCTACC # Right flank : CTCTAGCCCCCACGGTAATGCAAAATCAACAATATTATGTTTTGTTTTAACTAGAAATAGA # Questionable array : NO Score: 7.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.08, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 388-57 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_264978_length_520_cov_2.208651- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 388 37 97.3 36 ...A................................. ATAAAAAGTAGCAATTAGCATTAACGCCATATCGAA 315 37 97.3 38 ...A................................. TTTGTTTTTTTGTGTTTATTATACATTTTAAGGTTAAA 240 37 100.0 36 ..................................... CACATACTTCGCATTCACTCATATTTTTTTACCACC 167 37 100.0 36 ..................................... AAAATCTTTCAATATTCTCAAGATATAGGTTGTATA 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 GTAGCAATAAAATATCCAACAAAACAAGGATTGAAAT # Left flank : AAATCGTATAGAATCCTTAGAACTCGCTCAAAAATCAAGAGAATAGAAATAAGGCACCTACAACGAATTAATAATTGCTCCTCAACAAAATTTAAATAGTGCCTTAGCGTATTATATTATTAAAAAATTAAG # Right flank : TTTAATTTGGTACATATGTCACGATTGTGGTGCACATTGTAGCAATAAAATATCCAA # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:1.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCAACAAAACAAGGATTGAAAT # Alternate repeat : GTAACAATAAAATATCCAACAAAACAAGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_282907_length_450_cov_2.303406- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1 36 97.3 37 -.................................... AATACAGTTTGAACATTGGCACTACTTAAATTTTCTA 74 37 100.0 37 ..................................... TTCTAGGAAATTTTGGATTAACACTATCTAAAAAAAA 148 37 100.0 39 ..................................... AAAAAATATTCCTTCTGTTTTGTATGTCATGAGTATATC 224 37 100.0 38 ..................................... TTATTAAATCTTAATTTTTCTTTTCTAATTTTTTAAAA 299 37 100.0 36 ..................................... TCTAACATATTGATTACAATTAGGACATTTAGAACG 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 99.5 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : | # Right flank : TTTTCTGTAATGCTTGATATGGAGTTATATTTGTAGTGTCG # Questionable array : NO Score: 7.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 412-14 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_291490_length_414_cov_2.592334- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 412 29 100.0 44 ............................. TTGAATATCCCACTTTTTATCTGTAATTGTTCTACTGTAGCAAC 339 29 100.0 45 ............................. TATTTTTCACCTTATTTTTTCCAAATTAGGAAGTCTAGTAGCAAC 265 29 100.0 44 ............................. TGTTAATAAAATATTGCAAATTCTATTTACTTCAATGTAGCAAC 192 29 100.0 44 ............................. ACAATAACATCAACATTAAAGGCATCTCATCCACACGTAGCAAT 119 29 96.6 47 ...............G............. TCGTAAATTAATAAGTGAAAGTGAATTAGTTAATATCTGGTAGCAAC 43 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================================== ================== 6 29 98.9 45 AAAATTAGCTTCACAAAGAAGATTGAAAC # Left flank : AA # Right flank : GATTAACATTAGTA # Questionable array : NO Score: 7.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAATTAGCTTCACAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 389-55 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_310072_length_468_cov_1.090909- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389 29 100.0 32 ............................. AATGGAAAGCTGGGACATTTAGGGATGAGGGT 328 29 100.0 32 ............................. AAGAATTTAAGGTTAGAATACAATCAACAATT 267 29 100.0 32 ............................. GACTGTATTCCATTATGAAACCAATATAAGAC 206 29 100.0 32 ............................. TTAAAATATTAAAATGAGGTTAAAATCATGCC 145 29 100.0 32 ............................. GTAACATTATTTCAACAATTTACGATTACATA 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ATGATTAAGATTGGATTATACCAAAATTTTACATCATTAAGAAGAATAACCAATTCGCCACTTTGGAAGAAAAAAGAAG # Right flank : GGCATCAATTCCATATCTTCCTCACTATACCCCATTGTCCCCACGCATGTGGGGG # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 443-38 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_314102_length_467_cov_2.188235- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 443 38 94.7 36 A.........A........................... AACAAACTTAAAAACACAAAACCTATTAATTCTGTT 369 38 97.4 35 A..................................... TTGTGATGATTGTATGAACAATCCTATTCCTAAAC 296 38 100.0 36 ...................................... AGATATTGCCGTTTTATTGTATTAGCTAAATGTTCC 222 38 100.0 36 ...................................... TTCTTTAGTTAATCGCGGTACTTTAAGCAAGACTAA 148 38 100.0 34 ...................................... AAGAGTATTATACGAGTAATAAAGAGTTATTGAG 76 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 98.7 36 TGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CATTACCCAAACTAAAAATCATCT # Right flank : CGAACCGTTTAAGGCAGGTATTGTGGTGTCTGTGCCCC # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.29, 7:1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 14-531 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_327122_length_567_cov_1.059091- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CATTGCAGAAATATCGAAATCGATATTCCAAA 75 29 100.0 32 ............................. ACCTAATCGAACTAATAAATCAATTGAAAGCA 136 29 100.0 32 ............................. GGAATAGAAAAGTTCGAATTTGACATTCAAAA 197 29 96.6 32 ..................T.......... TAGTAAATAAAATCATAAAGAGGTATAAACTA 258 29 100.0 32 ............................. GTTATACAAGAATAGTTGCCGAGTTTAATGGG 319 29 100.0 32 ............................. TTGTTGAGTGTTATTGTATAATGGAAAATGGG 380 29 100.0 32 ............................. GATATGGAGTTAATATTATTTGAGAAAGAGAG 441 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CCTCCTATATATAA # Right flank : TTTCAGAAAATTAAGAAGTAAAGCAATAAAAATTGT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22-502 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_32896_length_564_cov_1.615561- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 100.0 39 .................................... TGAATATTGAGTAAGATATAAGAAAAGACCGTTTATCTC 97 36 100.0 39 .................................... TGTAAAATCCAAATCTGATAAAATAATATATTAGAGCAT 172 36 100.0 41 .................................... CAATCTTTTATTTATACTCTGTAATGTTGAATGTGAAATAT 249 35 94.4 37 .......-.............T.............. CTTCAATACCCCAATACGCATAACTTTTTGATCCTTG A [254] 322 36 94.4 36 .......C.............T.............. CAAGAAGCCTTGAGCTCTACTAACTGCATCAATATG 394 35 94.4 36 .......-.............T.............. GATTTTATATGGTACCCAAGTCTGTGGACACAATGC A [399] 466 35 91.7 0 A......-.............C.............. | A [470] ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 96.4 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAA # Left flank : ACTAAATTTTCAAATAATGATG # Right flank : GCATAATTGTTTTCTATTCATCGGACCGTTTTTTAATGTAGCACAAAAATTAGCTTCAGAAA # Questionable array : NO Score: 7.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.71, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 171-857 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_389891_length_910_cov_2.187739- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 171 29 100.0 37 ............................. AAGAAAGTGGAAGAACTCCTTGTGATACATGTTGAGA 237 29 100.0 37 ............................. ACGACATCGTTTGATGTAACAGAATCTAAAGAAGGAG 303 29 100.0 37 ............................. TAGTAAAAGTATCTATATAATCACCAGTAATTATATC 369 29 100.0 36 ............................. TTTCCTTTACCTCGAATGATTAGTTCTTTGGTCTCA 434 29 100.0 36 ............................. GTAATATAGTAGACTTGTATACTATAGGTAAAGTAG 499 29 100.0 37 ............................. ATAGTTGCTCCAATTAGCTCGTGTTCAAATACAATTT 565 29 100.0 38 ............................. TTGAAAGACTTGAAAAATGATCTACCTGCTAAATTCAA 632 29 100.0 36 ............................. CTCATTACAATCAATCCTTCCTAAAGTTATTATTAT 697 29 100.0 37 ............................. TGTTTTGATATGATATAGATAACACAGGATAAAAGGC 763 29 100.0 36 ............................. GATAATATACACTTCTTTCAAACATCAACAACCATA 828 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTAAGTTATACTTAGTAGTGTGAAAAT # Left flank : ATCAATTAAAAGATAAACGTAAAGATTTCAGCGACAAAATTATAAAGTAAAAATTAGTAATAATATTAAGAAGGGTCAACCTTTATAAAGTTAATACAGAATCGGAGGTTGACCTGAAAGGTATCTCTTGAGATATGTAACAAAGGCAATTAGATGAGATTTCGAGCATGG # Right flank : TATCACTGTTGATCCTGATACAGTCTATATTATAAGGTTTAAGTTATACTTAG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.93, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGTTATACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11-639 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_394354_length_680_cov_1.099458- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 37 ..................................... TTAATAGGACAATCCATAATATTACAATCATTATAAA 85 37 100.0 37 ..................................... AAATAGTCTCCTGAACTTAACGTATAATGAGATCCAT 159 37 100.0 35 ..................................... GAGAAACCCTCTGCTTGTTGCTCTGCGTTATAATC 231 37 100.0 36 ..................................... TAATGTTATTGCTCTTCCTTGTATATTGAGAATCTC 304 37 97.3 38 ....................................G TACATCACACGTTCGGACTCTACAATCCCGACCTTTTC 379 37 100.0 36 ..................................... TCATAACACCATTCACAAAATTTTACATCCTTATTA 452 37 100.0 36 ..................................... TTTAGATACAGAAGTAATTCCTTCCCAATCAATTGT 525 37 100.0 40 ..................................... TCCGTAATACGGGCTCCCATACAAAGTGCACCCTATCTTC 602 37 89.2 0 ......................C..A....A.....C | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 98.5 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CCTCATATCCG # Right flank : ATTACCCAGAAGGTATCTGTATTATAACTTATTACAGTGTC # Questionable array : NO Score: 7.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 41-375 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_396585_length_379_cov_0.984127- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. CTAAACTGAATGTTCTGGCCCTTGTAGATTCA 102 29 100.0 32 ............................. GGATTTAATATTCCAAAAGTTATAACTACATA 163 29 100.0 32 ............................. AGATTTCAAAACTCTTGCAACTCTGTATAATA 224 29 100.0 32 ............................. TAGATTAGATTCTTGAATGTTTTCCCAAACGA 285 29 100.0 32 ............................. ACAAAACAGTGAAAACTATTCCAAAATATAAA 346 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : GTGTACCGAAATGCAGAGGTATATTTTTATGATAATTGGTG # Right flank : TTAT # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_405088_length_432_cov_0.813115- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 173 37 100.0 37 ..................................... AAGGAGCACTATCAGGATTCAGAACTTTAGGAGAAAA 99 37 100.0 36 ..................................... TTACTCAAAATAGATATTGGGGATTTAAGTTGACTT 26 25 67.6 0 .........................------------ | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 89.2 37 CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAAC # Left flank : ATCTGTACTTAATTTATTGAATCGATCTTTGACATATTTTATAATTTATTATTATACAATAAATTAAGGTGAAAAATATATGCGGAATCTGGCTGAAAGGAGTGTGTTTACGGAGGTGAATGGCTTCAAAAAAGAACATTTCGAATATCAAATTTCTTGTTCTAATTACTTCTGGTATCGTGAGTTAGTAAGATTAACGT # Right flank : C # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:1, 7:1.79, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 351-14 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_411218_length_503_cov_0.989362- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 351 37 100.0 38 ..................................... AATGAGAAACATATTCGATACATTAAATTAACTGGAAA 276 37 100.0 38 ..................................... ATGATGGTGGAAAAAATTGATGTCTTGAATCTATTTAA 201 37 91.9 38 ..............TT..........T.......... AATAATGCTTATTGTTGTGATTGCGGAAAAAAAATGTT 126 37 100.0 38 ..................................... TGACCAAAACACGCCTTTTCTCAATTAGCAAATTATTT 51 37 94.6 0 ........................T.T.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 38 ATTTCAAAACTCTAAATGAGTATTACCTTATTTCTAC # Left flank : ATACTGATTTAGGGTTTTGAAATTTTCCAGTTAATTTAATTTATCGAAGATGTTTCTCATTGTAGAAATAATGTATAACTCATTTAGAGTTTTGAAATCTGTATCTTTTTCTACAGAGTATAGAGTAAATCAATGGGTAATCAAAACTCAGA # Right flank : CGTAAAGTAAAATG # Questionable array : NO Score: 4.27 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:1, 7:0.61, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACTCTAAATGAGTATTACCTTATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 400-42 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_417509_length_435_cov_1.207792- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 400 29 100.0 36 ............................. ACACACCTTGCCGGTATGCTTCGGTTGAACGTTTAG 335 29 100.0 37 ............................. TCTAAACTTCCTTTGTTCAAAGACATTTCATCAACTC 269 29 100.0 37 ............................. ATGTTGATGACATCTTTTCAACTGCAATAGCGGAAAA 203 29 100.0 37 ............................. CAGAAGAATATAGAGATTGGAATAAATCTGTTATTGA 137 29 100.0 37 ............................. TGATAATAAAGAAGCTCGCAAAATGGGTATAACTTTC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTAAGTTATACTTAGTAGTGTGAAAAT # Left flank : CGATAAAACGATAGAGACTAGTCTTACCTGAACCC # Right flank : TATGTTATAATATCGAATGCGACTCTTCTTTTAATAGTCCAA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGTTATACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 44-379 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_439141_length_388_cov_3.241379- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 44 37 100.0 37 ..................................... ATGAGAGTTTGACCGTATCCCGAAACAAATATATCCT 118 37 100.0 37 ..................................... ACATAGGTTGTTCCTCCGAATGAGCACTCCTTAAACT 192 37 97.3 38 .....................T............... AAAAATCCTTTTCTTTTTATTAAATCTATGATTTCTAA 267 37 100.0 38 ..................................... CCCACATATCTCATGTGTTCAGTAATTCCAATCCACGC 342 37 97.3 0 .........................T........... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : GAAATATCATAAAGTTAAAAGATATCGTGTGTTTTAATTTATCG # Right flank : TAGGTAATT # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.83, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 1-213 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_473095_length_249_cov_1.778689- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 62 29 100.0 32 ............................. GTTTCAGAAAATTAAGAAGTAAAGCAATAAAA 123 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : | # Right flank : TTTCAGAAAATTAAGAAGTAAAGCAATAAAAATTGT # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.51, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 511-27 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_48544_length_534_cov_1.140049- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 511 37 100.0 39 ..................................... ATACTTTCAAATGCATTACCGATTCTACAATATAATCTA 435 37 100.0 37 ..................................... CTCTGAAGGCAACAATTACCAATTCCCAATATGCCTT 361 37 100.0 37 ..................................... TTCCTAATGGAATCGAATGGTCTGAGTCTTTGCTCTC 287 37 97.3 38 ....................................G GATAAATCTCGATAAGGATATCCTGCACTAAAAATTAC 212 36 94.6 35 ..........-.T........................ TACTCTCATCAAAGTAAAAGTTTAAAACTTTATTT G,G [175,207] 139 36 91.9 38 ..........-.T............A........... ATTTTGATGCATTTCACCAAATCGTCCCTATACTTAAT A [133] 64 36 91.9 0 .........G-..........G............... | T [50] ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 96.5 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : GATCCAAAATCATCAAAATAGCA # Right flank : TACAAAATCTAATCCTACTTTAATGTC # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.70, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 356-25 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_503139_length_417_cov_1.427586- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 356 37 100.0 37 ..................................... AATTCATGTGTTTTCGGAGTATCTCTTTTGCCATCTT 282 37 100.0 37 ..................................... GATAATACTCTTTTAGATAATTTTATATCAAAAAAAA 208 37 100.0 36 ..................................... CCTAAACAAATATAGGTTATAATTGAGTGGTTAAGC 135 37 100.0 36 ..................................... ATAACTCAAATTTACTAAAAAAATCAAATTAAAAAA 62 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : AATAGCTTCCAATAGAAGATTGAAATTAAGGCTTTTATTAATTAATCGTATTTTGCCTGAA # Right flank : TGGAAAGGTTGATTATTATGTAAAG # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 32-760 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_515299_length_945_cov_2.880196- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================================== ================== 32 35 91.4 39 ................A....A...A......... TTAACTCTCTTATAATATTTTTTTGGAGATGATATGGAC 106 35 91.4 39 ................A....A...A......... ATAAAGTCTCCTCAAGAGGGTGGTGTTATTTACTTGAAC 180 35 91.4 38 ................A....A.....G....... AGAACCAAAACTGGAATATAATCCACCAATTTCTAAAC 253 35 94.3 40 ................A....A............. ATGAATGATAAAGAAAAATTCGAAAAAATGCTTGAAATGC 328 35 94.3 54 .....................A.........A... GGTTGATGTAAATGAAAAAAGGTACCAAAGAAGCCTTAGTTGATCTCTGGCTAT 417 35 88.6 38 ................A...GA...C......... TATAATCGAATTACCCAACGCTTTACCCAAAAATGCAT 490 35 91.4 38 ................A....A...C......... ATCCGTTTCTTCTTTGATGTATATTCAAAAATGCGTAT 563 35 100.0 38 ................................... TTATAAAGATTGTATGACCGAATTCAAGGGATTATTAT 636 35 100.0 54 ................................... GCACAGTTCATAAAACATCTCGAATGGGTAAGAGATACATTCCCGAAAGAAAAT 725 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================================== ================== 10 35 94.3 42 TTCAATCCTTATTTTAGTGGATATTGTTTTGCTAC # Left flank : CATATCTCTACATTACCGTTTCCATGTCAATT # Right flank : TATATTATATTCTTATGAAATATTATTTATTTTTATTTTTTAAAGTATCACCCTTTTTTATTTTTATGATATTTGATAAATTGGACGTTTAGATATAAAAAGGTTAAGTCCTTTCATAAAATAAAAATCAATTTCAGTTTAATAATTTAATTAAAATTTTATTTTTTATTGTAATTATAAGAGAA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.39, 7:0.18, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCTTATTTTAGTGGATATTGTTTTGCTAC # Alternate repeat : TTCAATCCTTATTTTAATGGAAATTATTTTGCTAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 145-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_547313_length_460_cov_0.741742- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 145 38 94.7 37 G...T................................. AAAGGAAAGTCTATAATACCACTAGGATTAATTGATG 220 38 100.0 38 ...................................... ATAATCTCTATTCTCTTCAATGATATATTTCTCTTCCA 296 38 100.0 37 ...................................... TAAGACAATTCGGACAAATGAATTTACCATATTCCAT 371 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 98.7 38 TGTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : AATATAAAAAAGGCTTAATCTTTTTAAAGATTACATAAAAATGCAATTTTAATAAACGCAATAATATCTGCAATATTCCAAAATTCAATTAAAAATACAAAAAATTAAGTATCTAAAAATCTAATTTTATTATATAATAATATAG # Right flank : TGAATCGCTATATTTTCTCAGAGATTTATTAAACCGTAGCACAAACAATAG # Questionable array : NO Score: 6.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.29, 7:1.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1000-738 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_58963_length_1004_cov_1.036488- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1000 38 100.0 38 ...................................... ATAATATATATCTCCTCCATATAATTTAGCTATCTCTG 924 38 100.0 35 ...................................... CTTAGTATTCCATTGTCTAAACTATTTAAAATTGT 851 38 100.0 36 ...................................... GCGACCAGTATTCCATATTAGTTCATACCAATCTAA 777 38 89.5 0 ..............................C..CTC.. | C [739] ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 97.4 37 AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : ATAA # Right flank : GAAGAAGTAAAAGCAAGGATGGAAGAGAAATTTAGCTTCGAAGAAGAACAAATGAGCGTAGAGCAAACGCTTAACGAATGCTGCCAACGTCTTTTTCCTCTTCTTCGTAAATCTGTTTGTAAGCTTCGTATATGTTTTTAAAGACATCCATCCTCGTAAAACCTCCTTTCTTCTCCAAAGGAAGGCGAACTTCTACCGAC # Questionable array : NO Score: 6.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.29, 7:1.08, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 394-33 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_600085_length_453_cov_1.141104- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 394 30 100.0 37 .............................. CAACAGTTTTTGATAACTGTTCGGTAAACATAGTTCC 327 30 100.0 35 .............................. TGTTTACGAGATTTATGTTTAATAATTCCACCTAA 262 30 100.0 38 .............................. TTAATTAATTTTGGAGACATAAGCTCCTTATATTGTCC 194 30 100.0 35 .............................. TCAAAAGCCTCTCCCGAAAGTACACGATCAGTCAT 129 30 100.0 36 .............................. TTTTATGGCGACTATATTTGGATATAAGGGGATAAC 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTTTTAATCTATTTCTAGTTAATAAATAAG # Left flank : ATCTATTTATAGTTAATAAATAAGTAGATCATCTTGATTTTAATAATAAAAAACATATA # Right flank : GCCTTAATTGAAGGTTATAATATAATTTTAGAC # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.99, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATTTCTAGTTAATAAATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 356-23 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_65933_length_403_cov_4.492754- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 356 38 97.4 35 .....................................A AGAATACATTGAAAACTTAATTAGAGAAGGATTAG 283 38 100.0 36 ...................................... AAAACACACCAATTAGAATATTCTTTTATTGTTTTA 209 38 100.0 36 ...................................... CTGTCGTATTCGTATGTGTAATTATAAGGATTTCGT 135 38 100.0 36 ...................................... CAATACTGTGGAAGCTCCGCAAAAAGCCCCATTGAC 61 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.5 36 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAACT # Left flank : AAGATTGAAACTAATTGGCATCGCCGTATTAGCGTTGCCCCAAGTAG # Right flank : TATTGGTAATAGAACTATTAAGT # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.29, 7:1.24, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 38-455 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_79836_length_501_cov_1.989305- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 38 37 100.0 40 ..................................... TATTATAAAAACTAAATAATAGAATAAGAAAGTTAGTTTA 115 37 100.0 39 ..................................... ATATCATCATATAAGGGATCGAATTCGTCCCATTTTCCC 191 37 100.0 39 ..................................... CTAATTTGCTCTGTTGCACAAATATAATCTTTACATTCT 267 37 100.0 38 ..................................... AAAAACTTCTTTCTTTGGTTATTAGAATAGCCTATAAA 342 37 97.3 39 ............A........................ GTTTTATTTTTTGTTAAGTATTCAGGTATCCAAATAGGC 418 37 94.6 0 .....T..........................T.... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.6 39 GTAGAAATAATTGACCTGAAGAAAAAGGGATTGAAAC # Left flank : ATCTCTAAAACTATTTCTGCTGTTTCTTCCCCTTCTCG # Right flank : AGATTAAATAGAACAACATAAATCAACGTTAAAGACTTTAGAGACT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATAATTGACCTGAAGAAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1726-1575 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_111565_length_1740_cov_1.649101- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1726 29 100.0 32 ............................. TAATGTTCTTAATAAATATTTTGAAGAATTAG 1665 29 100.0 32 ............................. TCTGTATTTCTAAAATCATCAATAATTAATGT 1604 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : AATTAAGGGTTGAT # Right flank : TAATGGGAATATATTATTAACAATTGAAATACAGTTCCTAAATTCTTTTACTGCATACGGAGAGGAAAATTACCGGGGTTTGGCTACCGTCAAGGCAGGTGACAAAGTAGAGATCGACAACTCTGTATATCTCGCTTATCAAACCTATCATCGCCACCAGGTACCGTCACCTGAATACCATGTCTGGGACCAATTTCGAG # Questionable array : NO Score: 8.42 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:2.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-239 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_188703_length_382_cov_0.972549- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 .............................. TTTTTCTAATAATGAAATCTCTCTTGTTCGTTCTGC 76 30 100.0 37 .............................. CTCTTCCTCTGTAGAGCTTGTTTGCCTGCATTATTTG 143 30 100.0 36 .............................. TCATTAAAGGAACAGCAATATTTGCGTCCATTTTTA 209 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 CTTTTGAATTAACTAGAAATAGATTGAAAC # Left flank : TATCTTCGTC # Right flank : TAAAATCGTTTTCTTTCGTTGGTGCCAGGGGGTTTCCAGAAAAAACCCAATGAAAAAAAAACACCCAAACACGTGGTTTTTTTATTCCAGTTGTGACTCTTGAAAAGATAATGCTCGTTTTTTCGTGTTACAATGAATTTTAC # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGAATTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 31-487 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_363306_length_540_cov_1.200969- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. TAATAACAGCAGATATGAAAGAGGCTATTGAG 92 29 100.0 32 ............................. TATATCCCGACCAATATATTGGATATAGCATA 153 29 100.0 32 ............................. GATGTATTGAGTAGAAATTATAGTTCAAAAAC 214 29 100.0 32 ............................. TAATAACTTGGTTTTCTTAAAATAAATGTTTC 275 29 100.0 32 ............................. AATTCCAAGCTTAAAGTATATCCCGAGCAATA 336 29 100.0 32 ............................. ACCACATAAAACTAATGAAAGAAATTAAAGAA 397 29 100.0 32 ............................. CATAAATGATATAGGTATTGGTTGTATTGCTG 458 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 ATTATCCCCACACACGTGGGGGTGAACCG # Left flank : TGATTTGAGATTTAGTATTTATAATAAGCAA # Right flank : GTGCAGGGCGTAAAAATGACGGAAATAATTCATTATCCCCACACACGTGGGGG # Questionable array : NO Score: 8.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCCCCACACACGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-344 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_388665_length_423_cov_1.645270- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. CAATAATTACAGATATAGCTAATATTGAAACT 71 29 96.6 32 ...................T......... TATAGGTGAGATGAGAAAAAGATGAGTGAGGA 132 29 100.0 32 ............................. AAAATAATTGCTATGTTTCCAGCAAAACCAGA 193 29 93.1 32 ...CC........................ AAACCATCAAAAATAATCTTGAAACCTTCCTC 254 29 100.0 32 ............................. TCTATATTTAATTAAAAATAATCAAAAGTCAT 315 29 86.2 0 ...A.......A.......A...A..... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : CCGATCTATA # Right flank : AAACATTTTCTTATCAAAATTTAAAATGTTCACTTGATTTGGGAAGGTAATAATCCTTCAATGTAATGTTGTCTTTCCC # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 442-47 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_439519_length_446_cov_0.746082- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442 29 93.1 32 ..........A......T........... GTGATTATTTGAACGCAAATACTAAAAAAAAC 381 29 96.6 32 ............................T GTAGGTTATGCTGAGCTTCATGCTGTTAATCG 320 29 100.0 32 ............................. AAGAGAAAAAATATCTGAATTGACAAAAATAG 259 29 100.0 32 ............................. GATCATTCTTGAAAGTTTAGAAAATAAAACTC 198 29 100.0 32 ............................. GATGATTGGAAAGGAAAAAGTCCTAAAATAAT 137 29 100.0 32 ............................. AGAAAACAGAAAAGGACAAAAGACAGAAGGAA 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ATCT # Right flank : GGCCAAATATAGCGCTAACAAGCAGCATAAGAGGTTGTCCCCACGCA # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 581-854 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_626754_length_1078_cov_2.086225- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 581 28 100.0 36 ............................ TGAGTGTACGAAATTTTTTCGTACACGGAAGGATGC 645 28 100.0 33 ............................ GCAATTTCGTACTTTAATATAAAGTACGAAATA 706 28 100.0 32 ............................ ATTCCCACCGTGAAAAAAATTCACGGTGGAGA 766 28 89.3 33 .....................T.A...G GCATTTTCAAATTGGTGGACACCCACCAATTTT 827 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ==================================== ================== 5 28 97.1 34 AAATCACCCTTGCAGGTAGGGATTAAAA # Left flank : TCCATGCCAAGGGGGTTCTTTATTAACTTCCATTATAATTAAGATTATCTTTATTCTTATTTAATTATTAATTTTTTAGATAAATTCAATCGAAACTTTCAATAAATAAAATTTCTAATATTTATTATTGCTTTTTGAAAAATCGTTCTAAAAAGGGGGTTTAATTGCCTAAAAATGTATGAATATTGCAATTAATTTAC # Right flank : GTAAGAAAGTAAGAAAATAAGAAAAATTACATCTATTAATATTACTTTTTAAAAAAAAGCTCTAAAAATAGGATTAAATTGCCTAAAAAACACAGAAAAAATGGATTAAATATGGATAGAAAATGGAGATTTTAATAATTTTGTTGTTTTGTCATATCGAATTTCCTTTCTAAATCTATTCTATTGGTGATTTGTCATAT # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:1, 7:0.95, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCACCCTTGCAGGTAGGGATTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 17-352 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_716788_length_382_cov_0.952941- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 89.2 39 ......AC..A.T........................ GATAATGTGCCTCCTGCTTCAATAGATTTAGGTATTTCA 93 37 100.0 35 ..................................... ATTCTCACCTTAGTAATACAATCCGAAGCATTCCA 165 37 91.9 39 ..........A.T........G............... TGTAATAATAAATCAATCGGATATAATTCTGCATTTTTT 241 37 100.0 37 ..................................... TAATGTATATCTCCAATAGGAGTAGCCCAAAACTGGA 315 37 97.3 0 ....G................................ | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 95.7 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : TAATCTGATCAATTGCG # Right flank : AATTCTTCTCTAACTCTAATTGATACTTGT # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:1, 7:0.69, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 38-433 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_154382_length_465_cov_0.733728- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 96.6 31 .......................A..... TTAATACCGTGCCATTTAGGCGTGTTTGTAG A [66] 99 29 100.0 32 ............................. AAAGGTAACATCAAACGCCCTACAATGTTTAC 160 29 100.0 32 ............................. TTAATAATGTATTTATAATTCTATTTAATTGA 221 29 96.6 32 ...............A............. ATGATAGTTCTATTGTTTTTTGATATACATCT 282 29 96.6 32 ..........................A.. CCCTTAAGAATTACTTCGACAACTACGAATAC 343 29 96.6 32 .......................A..... TATAAGTTCAGTAAATCCAGCTTTTATTAAAC 404 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.1 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TACCGAATATAAACACGTCTAAATAATACCATATTCCG # Right flank : ATTCTGTTTGTAGATAAGCGTCAGTGTAAATG # Questionable array : NO Score: 7.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:1, 7:1.02, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : GTTGTCCCCACGCATGTGGGGGTATACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23-383 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_213996_length_404_cov_0.895307- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 37 .............................. TATATCCTGTACATCCATATAATCAACTTAGAATTAA 90 30 100.0 36 .............................. TTTGCTCATAATACCTATTAATTTCTTGTATGGTTA 156 30 100.0 36 .............................. GTGATTGTAAACTTGAAAATTTCCAATACAATTCTC 222 30 100.0 36 .............................. TACATAATGGCTTGCTTAATTCTATTTTGATAATAG 288 30 100.0 35 .............................. ATGATGTTTATAATGTGTTCCACATGGCTTATCAC 353 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 38 GTTTGTAATTAACTAGAGATAGATTGAAAC # Left flank : TCATATGACATTTTCATTTTCCG # Right flank : GAAAATGAAAATGTCATATGA # Questionable array : NO Score: 8.12 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAATTAACTAGAGATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 585-15 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_21730_length_584_cov_2.457330- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 585 37 100.0 39 ..................................... GAAAAAATTCTTTTCAGATCTAAGAGAAGACGAAAGTAA 509 37 100.0 40 ..................................... ATTGAATTCATGCTCTCTGCTAATTCAGCAGTAGCCTCGC 432 37 100.0 39 ..................................... TTTTTAATTGATTTAATGATAAAAAATAATCATATTTAG 356 37 100.0 38 ..................................... TAGTTATTAATTGCCCTCTTGAACTATTAAGAACTATT 281 37 100.0 40 ..................................... TTAATATCTTCACACGGAGTATTAATAATAAAAAATGAGG 204 37 100.0 39 ..................................... TCTCTTTTGTTGCTCTAACTGACATTCCCCTTTTCTCAA 128 37 100.0 39 ..................................... GAAAAAATTCTTTTCAGATCTAAGAGAAGACGAAAGTAA 52 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 39 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : | # Right flank : TATTGAATTCATGCT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 280-13 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_235316_length_402_cov_1.727273- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 280 37 100.0 42 ..................................... GAGTTTATTTCTACAGCTCCATCCATTTTCCTACTCATCAAC 201 37 100.0 37 ..................................... GTATCTGGTAATCTTTAATAATGTTAATGTGCTTCAT 127 37 100.0 40 ..................................... TTCATAGCGGTCTGAGCTTGTGCGGTTAAACCATCAGCTT 50 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 100.0 40 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : AGCGCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAAGAGCGTACGCTACAACTAGTACACGAGGTGAAAGTGAAAACTGGCAAAAACGCTTACTAGAAGCAGAATCCCCGC # Right flank : CTTCATAGCGGTC # Questionable array : NO Score: 4.16 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.56, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 895-30 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_23947_length_909_cov_3.375959- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 895 37 100.0 37 ..................................... TATTAGAATATTTTAATTTTGTTTCCCAAAGTTCTTT 821 37 100.0 38 ..................................... TTGCGCTTGGATCTCCAATACGGTACACTTTTTGTTTA 746 37 100.0 38 ..................................... TATCCGATTGATGTCATGGCTAATAACGGTCTTGCAAG 671 37 100.0 39 ..................................... TGATGTTATATGTGATGCAGAATTCCATATAGACAGAGT 595 37 100.0 39 ..................................... TTGTCCTTATCCATCCTTTTTATTGTCTTGGTGTCAATC 519 37 100.0 37 ..................................... TATTAGAATATTTTAATTTTGTTTCCCAAAGTTCTTT 445 37 100.0 38 ..................................... ACTAAAGTTGGGTTAATTGTAATAACAAATTCATCATA 370 37 100.0 38 ..................................... GAAGCTCTACAAAACTTTGTACAACAATTCAAACAATC 295 37 100.0 39 ..................................... TGTATAGGAAAGTATAGGGGTTATTTGTTGACAGCTGTC 219 37 100.0 39 ..................................... TTCTGGAAATTTTGGTATATCAAGAACTGGTGTTTTTTC 143 37 100.0 39 ..................................... AGTCTTTTGACTCCTAACAACACAGCTAACGGTAGTAAA 67 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 38 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : GTCTTGGTGTCAAT # Right flank : TTATTAGAATATTTTAATTTTGTTTCCCAA # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 518-680 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_269067_length_1062_cov_1.620321- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 518 31 100.0 36 ............................... TTATTATATATTCCAGCAAACAATCCTATTGTTGGT 585 31 100.0 33 ............................... GTCCAATAACCGTCAGTTGCTTCGTCAGGATTG 649 31 93.5 0 C.............................G | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 97.8 35 TGTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : ACATATTTTAATAATAACTAAAAGACTTAATGTAAAATGGATTAGAATGTGTTGGTGTAAATTGACTCTTAGTGAAAAGAAGAATGGAAATGTTTAAATAGGTAGACATCACATTTATAAATGAGTTAAGCTTCGACCGTGATCGATAGAGGTGACGGTAACAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACC # Right flank : TTTAATTATAGAAGGTACTACTTGAAACTTTATTTAAACGTAGTATTTGACTTAATTTTTTTTTCAGCTATCATTTTTAACAGCCAAGTTCATTACTTAGTTATGAGAGAAAAAATCTTTATCACATCTATAGGAAATTCTCGCAATTACATGTATACTGATTATATATTTGCTTCATCCGATGTAAATTCATCTATTCC # Questionable array : NO Score: 6.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.34, 7:1.43, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 1109-12 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_290977_length_1153_cov_1.311891- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1109 37 100.0 41 ..................................... TGTTAATCTAACACTAACAGAACCATCACTATGAAAGACTA 1031 37 100.0 38 ..................................... TTATTTCACCTTTTCCTTTTGTTTTTAAGAGGTTGCAA 956 37 100.0 38 ..................................... AGTAAAACGGAAGGATATTAATGTGGAGAAACAAGAAA 881 37 100.0 38 ..................................... ATTCCTGAGACCGAGAATATTATTTACAAAAATTGTCA 806 37 100.0 40 ..................................... GAGTGGGCTGATCAACTAGTCAAATTATCTTATAAACGTC 729 37 100.0 37 ..................................... GTAGATTACATCAAAATGGAAGGTAAAAATTTAATGG 655 37 100.0 42 ..................................... GAAGGAAATTCTTACGACACAATATGTGCACTCTTTTCTGCA 576 37 100.0 38 ..................................... ATCACGTTTTTTTATCTGTCTCATCTTTGTAGAAGTAA 501 37 100.0 38 ..................................... TTTGAGCCGAATTATGTTACAAAAAAAGCATTTGAGTT 426 37 100.0 38 ..................................... ACATTACTGATGAAACTTACAAAGCTGAATTAATCAAA 351 37 100.0 38 ..................................... TTGGAGATATCTATTTATGTCTAAGCCGCCAAACATGG 276 37 100.0 37 ..................................... TTGTTTTTCTCTTCAGCAAAGCGATGAAAGGAGTATT 202 37 100.0 39 ..................................... AATAAACATGAGGAACTATGCGCAGAAATAACGGAATTT 126 37 100.0 40 ..................................... TATGAAAGAATATGAACTCTACAAGGCTGAAAAGACATCT 49 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TTGAAATATCTTCTGGAGTTTGACGGGTATAAGAGCGTAACTAT # Right flank : TTCTGAAACTTA # Questionable array : NO Score: 7.44 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 41-619 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_303438_length_654_cov_0.831120- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. AATTTATTTGCTCTCATTTTACCGAGAACTTC 102 29 100.0 32 ............................. ATACTGTTCCTGTTTTTGATGATGGAGATGAA 163 29 100.0 32 ............................. AAGCATTCACATGATAAAACCCAACAGTATAA 224 29 96.6 32 ............T................ GGATAATTAGCAGAACCCCATCCAGATTGATA 285 29 96.6 32 ...............A............. CAACCATTGCTAAAAATAATATACCAATAAGA 346 29 100.0 32 ............................. CGAACAGATATTACATTAATAGACGAAGGTAC 407 29 100.0 32 ............................. CTGAATACGAGTCATATGTAGGAGCAGTATAC 468 29 100.0 32 ............................. AGAATATGAAAACTCAAATTTGAGTAGATTAA 529 29 100.0 32 ............................. GTCCAATCTGGTTTTGAGTTACAAGGTGAAAC 590 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 ATTGTCCCCACACATGTGGGGGTGAACCG # Left flank : GTGAACCGAAACTTGAGAATCTATTAAAAGTATATCAATAA # Right flank : ACTGGAGATCGTATAGATAACGATAATAAGAATTG # Questionable array : NO Score: 8.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:1.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-446 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_336259_length_847_cov_1.722222- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 32 37 100.0 41 ..................................... CATTACTATCCATATCTGTAGAAACAAAGAAATTATTGACG 110 37 100.0 38 ..................................... GGTGTCCCTTCGTCGACCATGAATAAAAGCTTCATGAA 185 37 100.0 38 ..................................... TTTCGTGAGGATGGAAATAGTTGGAAAATCATTGCTTT 260 37 100.0 38 ..................................... AACCTTATCATATCAAATAAACTTCCAAGACCAGCAAG 335 37 97.3 38 .................................C... ATCCAATAGTGTTGTCCTTTAATATTAACTCTTTGAGT 410 36 83.8 0 ......A..A.T......AC............-.... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 96.9 39 GTTGCATATTGAATCTCATTTACTAGAGAATTGAAAT # Left flank : CTTTGATAGGCCGTTTTAACATAAACCCTAGG # Right flank : TTCAATAACTCGCTTTGTTACTATAATTAATCATATGATTGAGGATCTAATCAAAACTGTAAATATCTAGAATTTGTTTAAATAGAAACTAATAAATGTAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCAATTAACTATTATCAGCTCTTGT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:1, 7:0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCATTTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 427-33 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_342450_length_480_cov_0.702550- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427 29 96.6 32 .G........................... GGCTACGATGTCATACTTCGCTGCGCAGTTTC 366 29 100.0 32 ............................. AAGAATCGAATCATTGTGGTTTGTGGCAGTGC 305 29 100.0 32 ............................. GTCGTAATGATGATTTTAGTTTCGCTCTTACT 244 29 96.6 32 ..............T.............. GGATGAAGATATTCCCGAGTACAAATGAGTGA 183 29 100.0 32 ............................. GGAATCGCACGACCTATTGGAGTCATCGAGGA 122 29 96.6 31 ..................A.......... TCTGTTCCAACAAATCTTGATGCCACGAATA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 ATTGTCCCCACGCGAGTGGGGGTGAACCG # Left flank : CCACGCGAGTGGGGGTGAACCGGAGGTTATCAAGTAATGCTTAAAGCTAATCC # Right flank : GAAGGATATCAAATAAGACTTAAATCTAATCCA # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCGAGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 220-405 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_61409_length_794_cov_2.103448- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 220 36 100.0 39 .................................... AAAAGCTAGCTCTCTTCTAGGTCTCTTAACAACTAAAGT 295 36 100.0 38 .................................... GCAGAAGCCAACCAATGAGAACCTGCGCTATATCATGT 369 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 99.1 39 TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Left flank : ACCACCTATAAGTAAGTGGATAACAATAAAGCTATTTAAGGATTAAGAAATCAAAGAAAAAGAAAAAAAAGCAAATAACAAATTAATAACTGAAATAAAGTAATTCAAGCGTAAATAAATATCAACAAAATCACTGATTATTGACGAAACTAGTTTGTATCAGTTTAAAAAAAATTTCAACGAGGGGTAGCAAAAAAAGC # Right flank : GCGGGGATTCTGCTTCTAGTAAGCGTTTTTGCCAGTTTTCACTTTCACCTCGTGTACTAGTTGTAGCGTACACTTTTTCTCTTTCTCCCTCATTCTTAAAGTTTTTGCTGTTTCTCGCGCTCTAGCATTTTTTCTCTTTTTACGTTACTTCGCTTAAGGCTCCAAGAAAGCGTTTTTTATTGTTCATATTATTGTTATTC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.76, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1025-80 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_105645_length_1137_cov_3.941584- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1025 29 100.0 32 ............................. AAACCTTTACCAAAAGTAAAATCGACGAGAGC 964 29 100.0 32 ............................. ATTATAATTAGTAAAGAAGATTATAATATGAC 903 29 100.0 32 ............................. CTATTTTTGGAACAAATTTATAATAATAAAAA 842 29 100.0 32 ............................. GATTTCTATAATTTAGGATATAACGTTGAAGT 781 29 100.0 32 ............................. AATACACTTTTATCAGCTTTAAAATACCTAAA 720 29 100.0 32 ............................. GCTAAATTAGCGGCTGAAGCTAAAACTAAAGC 659 29 100.0 32 ............................. GATTTGATAGTTAGTTTTATAAAGGAGGTCGT 598 29 100.0 32 ............................. AGCCTTAAGAAAGAGGTTAGGGCGATTATGAT 537 29 96.6 33 ...............A............. GAGACTTTACAATCTTACATGGACCCATTACAC 475 29 100.0 32 ............................. GCATGTAAAAGAGTTAAAAAATCCTTTCTTCC 414 29 100.0 32 ............................. TAAAACCTGAACAAGATTTTGCTTTTGAAAAT 353 29 100.0 32 ............................. GAATTAGTTCAAAAATATCTCGAAATGAATAA 292 29 100.0 32 ............................. ATATGAAAGAAGAAGGAATAATTGAAGAAGTT 231 29 100.0 32 ............................. ACAAACAGTTTTATTCGGGACTTAAGATTACC 170 29 100.0 32 ............................. GAATTAGAAATAAATCTATTAAAATAAAGAAA 109 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TGTAATCAGCTTGAGCGCGCTGTTTTGTCTTCACTTTTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAAAA # Right flank : GATGTAGTTGAAAAGAGAAAAACATCTACAAGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCT # Questionable array : NO Score: 8.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 417-62 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_111220_length_1931_cov_5.305432- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 417 29 96.7 36 .....-........................ GCTGTAGGGTCAACGAAAGAAAACATCATGTTCGTG 352 30 100.0 36 .............................. AATATCTACCCCAGACATTATTCTTTCTACTATTAT 286 30 100.0 35 .............................. ATTACTATACAATTTCTTTTCCTCTTTACTATAAT 221 30 100.0 35 .............................. AGACCAATCTTGATCCTCTGTACATCTGTTAATTT 156 30 100.0 34 .............................. TCTTGTCCAGAACCTTTTGACACATAAACGACTA 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : CTTCAAAGCAACAAAACTTGTTGTGCAAGATGCTCTTTTGAAGAGTTTTGTTGGTGTAAATAGACCCTTGGTGAAAAGAAGAATGGAAACTTTTAAATAGGTAGACTTCACATTTATAAATGAGTTCAGTTTCGACCGTGATCGATAGAGGTGATGGTAAAAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACCT # Right flank : CCCTTCAAAATTCTCGTATCCTAAGTAAAAGTTGTCATGTTTAGATCGGAAGAGCGTCGTGT # Questionable array : NO Score: 7.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.97, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 57-270 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_114019_length_10660_cov_9.347384- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 57 30 100.0 36 .............................. CGGATTTTCCAATAACCAGTATCCAGTCTCTGACAT 123 30 100.0 36 .............................. CAATTAAGATTTATTACGACATTCGCGAGTCTCTCA 189 30 100.0 19 .............................. TTGCTTGAGTATTTTTAAT Deletion [238] 238 29 76.7 0 .T..........TT...G..-..T..A... | C,TT [247,255] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 31 TGTTTTATTTTAACTAGAAATAGATTGAAA # Left flank : AAAAAACTTAATTGTTAAACCCTTCAAAATTCTCGTATCCTAAGTAAAAGTTGTCAT # Right flank : TCCCCATTAAGAAATCACTATAGCTTTCGCGTATGTATGATTTTTGGGTTTAACAATTAAGTTTTTTCCGGATTGATTTATTGAATATCCTAAAAAAGAAAATCCCTGTTCTTTTGTTAATATTTTTGTTTTTTCGTTATTAAGGGACAGACCCCTTTTATCAAGGAATTGTTCGAGTTTAGGTATTACCCATGTAGTAA # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.99, 7:0.56, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 5097-4230 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_114201_length_5778_cov_8.137321- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5097 37 100.0 38 ..................................... TTCTTTAGAGTGAATCCTAATTGGTTTGGTTCTTTCAA 5022 37 100.0 39 ..................................... TTCAAATTGTCTTTTACCACTCGAACAAATTCTTGTTTT 4946 37 97.3 39 ........................C............ TTAGTGTAAGAGTCTGGTCTATAATCTCCCCCATATCTG 4870 37 100.0 40 ..................................... TTTTCCTTATTGTATTCAGCTTTATGTTTGGCAAATTGTT 4793 37 91.9 38 ..................AC....C............ GGTTTGCGAATTTCTTTGATGTATTTTAGAGCTTCTTT 4718 37 89.2 39 ..................AC....C..........T. GAACGATTAACAGCATGCAACTCAGCATAGCCAACCGAA 4642 37 91.9 38 ...A..............A.....C............ GTTTTTAAGTTAGCAACTCTAAATTTATACCAATTTAA 4567 36 89.2 37 ...A............T.A.....-............ TACTTCTGGTCTAACACGAACGCTTCGAACTGCTTCC 4494 37 97.3 37 ..................A.................. GATTCAGGGTACATTGCAGATTTTTTACACGATCCTC 4420 37 94.6 40 ..................A.....C............ TATGTAGTCCGTAGACATCTTAATAAGAGAGGCGTTTTCA 4343 36 91.9 39 ...A...............-....C............ CAACAGCTTCAGTAAGAGAAATGTTAAGGTTTCCATTTT A [4325] 4267 37 91.9 0 ...A....T.........A.................. | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 94.6 39 GTAGCAATAAAATATCCACTAAAATAAGGATTGAAAT # Left flank : AAGAGAAAAAAGCGATGTTCCCATTGGCCACAAAAAAAAACTCGCAACGCTTTCAGGATTTTTAATGGAGCTCAACCACATTTTAGAACAAATGGAAAAAATCAAAAATATAGATATAGAATGCCTACAACGAATAAATAATCGCATCTTAACAAAATTTAAATAGGGCTTTAGTGTATTATATTATTAAAAAATTAAGG # Right flank : GAACAGTCGATTTTACTAAATATGGAAAAATTCAAGGGTTTTATTATGCAATAGTAATCGAAAACACTGAGTATGTAGCCATTATTGAAGATCATAAAATTCATTTTAAATCCGAAAAAGAGTTGGTCTTTACTAAAAATTCTACCTTAAAAATTTTATAGGTTACTATCCCTAAATCCTAAGCAAAATTCGCCTTTTGT # Questionable array : NO Score: 6.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:1, 7:0.46, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCACTAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 88-346 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_119584_length_399_cov_1.687500- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 88 36 100.0 39 .................................... CGTAGAAATTAGATATCGAGTTATTTCGTCCTTAATCTT 163 36 100.0 37 .................................... TTAAAGAAACTACATTCCCAATTATTTGAGAGATATT 236 36 100.0 38 .................................... CTTGTATCTACTTTTTATTCCGTTTCTGCGTGCAAACA 310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Left flank : TTCAGACGTGTGCTCTTCCTATCTCTATATTTATTGCAACAATATCTCTCAAATAAAGTTCAAAGTTTCGTCAAATGCAGCGTCTTCG # Right flank : GTGATAAGCATTAACTCGTCTATTTCGATGTTCTTAAGTTGCAATAAATATAG # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 432-26 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_163400_length_431_cov_0.815789- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 432 33 89.2 38 ----................................. GTTGCCTCTAATATTATAAACCTTTTATTACATGTTGT 361 37 100.0 38 ..................................... GGAGAGAGATTAAGAATTTTTCGGGCTTTTTCGACCTG 286 37 100.0 36 ..................................... TAGAGCTAAAAAATAGATTTAAAAAAATTGGAATTA 213 37 100.0 38 ..................................... TTTATTTCACCTTAGTAAATTGGTAATACGTTTTAAGT 138 37 100.0 38 ..................................... GAAGTTATGGATAAATTCAAAAGAATCTATCAAATCAT 63 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.8 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : | # Right flank : TACATCATCTGGATAAATTCCATGAA # Questionable array : NO Score: 7.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 38-372 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_166072_length_411_cov_0.866197- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. TGCTGTGGATTTAAAAAAATACATTTACACAC 99 29 100.0 32 ............................. AATATTGTAGATGGTTAACGAGACAATTTCCA 160 29 100.0 32 ............................. AAAAACCTAATAATTGTGAAAGATGTAATAAA 221 29 100.0 32 ............................. GCTAAAGATTTAAATTTAGATTCTTGTTTTGT 282 29 100.0 32 ............................. AATTCTTGAGACATTAATTCTAACGACTCCAT 343 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TACCGTAATCGTATTCAAACCAGAGTTCGTAAGAGAAA # Right flank : GTCAATCTTACATCGAAGCGAATACAAAATAATTGTCCC # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62-358 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_169281_length_384_cov_0.957198- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 62 30 96.7 38 ............T................. TTGACTCTGACCTCTTCTATATTATTTATATTGATATC 130 30 96.7 37 .....T........................ GCTCGGAGACCTTTCTTATCTCTTTCATTCGCTTGAG 197 30 100.0 36 .............................. TATATTTACTATTTGAAACTTACTCTTAGGGGGAAG 263 30 100.0 35 .............................. TTGCTACCCATATTTTAAAGACCTCCAACTAAAAA 328 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTTTGCAACTAACTAGAAATAGATTGAAAC # Left flank : CAACTAACTAGAAATAGATTGAAACCTGCTTTATGAGGAGACATCCACTAGCATTTATAACG # Right flank : TTTTTAATGAACTTCAATAAGGTTCT # Questionable array : NO Score: 7.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.99, 7:0.98, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAACTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 183-441 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_220371_length_456_cov_0.753799- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 183 35 100.0 40 ................................... TGTTAATAACTCCAAGCGTATCATATCATCAAAAGTTAAA 258 35 91.4 40 ...T...A.....................C..... TCTCTGAGACAATAAGCTAGTATGAATGTCTTGAGTTCGA 333 35 100.0 38 ................................... TAATTCAATTTCTACGACGCCAGCAATCTGATACATTA 406 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 97.8 40 TAGCAAAGTAGTGTCCATTAAAATAAGGATTGAAA # Left flank : TTTGGACGGAAAACTTGAAGTTTAACTTTTCTTTTAGAACTCGAACTTGGAATTAACTAAATATTTCTTCACTTAAGAAATGAAAGCGACGCCAGTTAAAATCGAGTAGAATTGACTCGTTCGATGAAAAAATCGACATAAAACTCGTGAGCCCAATATTTCATGGTTGGAAGCTCCGCCCGT # Right flank : ATAGACGATCTTTAT # Questionable array : NO Score: 6.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.39, 7:0.45, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGCAAAGTAGTGTCCATTAAAATAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 90-363 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_25359_length_385_cov_1.724806- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90 29 100.0 32 ............................. GTTGCATTAGGATACATATAAAAATCCTCGGC 151 29 100.0 32 ............................. AATATAGGCGGTCTTGTGGAATCTTCACGTTT 212 29 100.0 32 ............................. GATAATGGTAGCTCTAAGGATTATCTATATTT 273 29 96.6 32 ....................A........ CTCCATCTGCAATTTATAATGTTTTACGAGGT 334 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 ATTGTCCCCACGCATGTGGGGGTGAACCG # Left flank : ATACGAGATCGTTTCACGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGAACCGATTAGGTTAATAGCATTTTTAGTTATTAGTATA # Right flank : ATTATATTCCTCAACAATGGGA # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428-579 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_260104_length_583_cov_2.370614- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428 29 100.0 32 ............................. AAGTTAATGATATTATTAGAAAATTAGAAATG 489 29 96.6 32 ............................T TTTTGATAGAACGCTTCGTTATCTACATATCC 550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 ATTGTCCCCACGCATGTGGGGGTGAACCG # Left flank : ATATTAACGCCTTTATATGCGTATTTATTATTAAATCCAATATTAAAAAATAACAAAGGTGATAAATTGTATAGAAAAATTTGAAAACTAATTATTTATTGTTAAAGTGAATAAAATGTATGCTTGAGACTACAAAATACCAAAATTGGCTATCATCGTGGAGAATAACCATTTCACTTATTTTGGAAGAAAAAAGAAAT # Right flank : ATAA # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:2.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 398-64 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_291199_length_424_cov_1.124579- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 398 29 96.6 32 ...........................A. CTAATTGCTGATTAAATATTTTCAAACTATAC 337 29 100.0 32 ............................. GCAATAGGGCTTCAAGATTATTGGACGGAAGC 276 29 100.0 32 ............................. GAAAATCAGAAATCTATTCCGCGCGATGATTT 215 29 100.0 32 ............................. ACACATATATAAATTAACAATATAGTGAAACA 154 29 96.6 32 ...............A............. GTTATTTCAATAAAAAGAGATCTTTTAGGAGG 93 29 89.7 0 ......T...A....A............. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : AGGGCATTTAAAAAGTGGGCTAGAGA # Right flank : GAACAATTATTACGAACGTAATTATTATTCCCAATTGTCACCACGAGATCGGAAGAGCACACGT # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4-828 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_41559_length_1073_cov_2.375264- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. GAATTAGAAATAAATCTATTAAAATAAAGAAA 65 29 96.6 32 A............................ ATGTAGTTGAAAAGAGAAAAACATCTACAAGA 126 29 100.0 32 ............................. TTAGATAAGAGTATAAATAATAAAACTCCTAT 187 29 100.0 32 ............................. GGAAGGGGTTTTCAATAGTAGTAGTAATAGAA 248 29 96.6 32 ...................A......... GCGGTACATAATTCCAAACAATACATCATATT 309 29 100.0 32 ............................. TTAGATAGAAAGATTACGGATAGCGAAATAAC 370 29 100.0 32 ............................. AATAGAAGCGTTATCCAAAGACGGAAGAGCAA 431 29 96.6 32 .....................A....... ATGACGCCACCAAGCCACATAGTAAAGAATAT 492 29 96.6 32 .......................A..... AAAAACCTCGAGGATTTAGGGTACGAGGTCGT 553 29 100.0 32 ............................. CGTTTTGTTGCCTTTCTTAACCCTTAAACTTT 614 29 96.6 32 ....C........................ ATTCCATTTTTTCATAGATTAAAAATAATAGC 675 29 100.0 32 ............................. GAAGTACCAGAAGCCTTATCGTCATCCATGTA 736 29 96.6 30 .............T............... GTTTAAAGAAGTTAGGTTGTATATAGCAGG GG [753] 797 28 82.8 0 ...........A.-.A......C...T.. | A,A,C [799,801,814] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ACCG # Right flank : ATTTAGTACCGATGTTGGTGAAGGCTTACTACTAGATAGATTTTTAGATTGAGAGGATTTTGAATTTTATCATTAAACACATGCTAAAATACTGATCTGAGCTATTGCCATAACTTAAGGCAGGTTTTCCTGTAATATCATCTAAGCCGTTGCGATCCTGATCCATACATCGTTCAAGCCAAATATAGCTACTTTCATAG # Questionable array : NO Score: 7.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:1, 7:1.10, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-363 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_59846_length_392_cov_0.932075- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 47 23 87.0 7 ..................C.CT. GTAAAAG Deletion [77] 77 22 82.6 40 .....T......G.-...A.... AATAAAAGCATAAGAAGGATCATAGTAATCTGTGAGGATT T [98] 140 23 100.0 44 ....................... AATGATTGGATTCTTTTGATTTCTCCGTTTTTATCTGGTTTGTG 207 23 95.7 44 C...................... CTTGTCATTATATACCCAAAAGCCAGAAAGATTCCAAGTTTATA 274 23 95.7 43 .....A................. GTTTTAAATTGTATAGACATTTTTTTTACCCTTTTCGTTTGTA 340 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================ ================== 6 23 93.5 36 ACTAACTAGAAATAGATTGAAAC # Left flank : TCAATGTCAGTTTTGAATTAGCAGCTAAATATACACACGGTTTGCAA # Right flank : AGTATCTGCCAATTCAAAACTGACATTGA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:-0.41, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1031-1511 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_68964_length_1559_cov_1.738827- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1031 36 91.7 39 ........G..C..........C............. CTTTTACAACGACATTGTTTCTCAATGTTGGGTCTTCTT 1106 36 100.0 39 .................................... CATTTGGTTTTTTTCCAAACTTAGATTGTCAAAAATCAT 1181 36 97.2 38 ...........................G........ CTTTTTGCACCTCTTTGTTATGTATTTCAGAGGCCCAA 1255 36 100.0 38 .................................... TAATTTAATTCCAATTAGACAAGTACTGCCATTTTTGC 1329 36 100.0 38 .................................... CCGTCAAATCCAGTCATTATTATATTACACATTTATTT 1403 36 100.0 36 .................................... CTTTTGATGTGCTTCTTTTGCTAGTTTGTTAATTAT 1475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 98.4 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Left flank : TTAAGAATTAACTTATAAGTCCGCCCACCAAAACTTACCATGGTTTCAAAAAACAATTGTCAAAGTTAAAATTTAAGTCGTTAATAAAAGAAAACTTAGGTGAAGGAATCAATTTCTCAAGAAAGTAAGGGTTCCCTATTTTTCCTTCTAATTAGAGTAAAGATTAAATACTCGATAATTCTTATTATATAATAATAAGA # Right flank : TTTTACATGATAAAACTTATGCAATACGTTTCTCTTGTTGCAATAAAT # Questionable array : NO Score: 7.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:1, 7:0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 737-417 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_69066_length_2331_cov_2.579401- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 737 25 84.0 51 .....................TTTC GCTCTTGGCTTCCAATGGCGACTATTTACCCATCGTTGCGGTTGCAAAGAA 661 25 100.0 51 ......................... CGGATGCTCGAGCAGATAGAGGAAATGGCAGCTAAAAAGGGTTGCAAAGAA 585 25 100.0 51 ......................... TTTAAGCTCTCCTCCCATTTGTCTCATACACTACAAAAGAGTTGCAAAAAC 509 25 100.0 42 ......................... ATTTGAATTCCCTTATCGGTTATTCGGATATTTGAAATGTTG 442 24 80.0 0 C....A...A...T......-.... | G [418] ========== ====== ====== ====== ========================= =================================================== ================== 5 25 92.8 49 TAAAGCTCATTTACGAGTATTGAAA # Left flank : CCCGCCAATTTGAGGATTAGAAGGTGCTCTCTCCTGCCTTCTTTTACTGTAAAAAAGAGTAAAATCTGGCGGGTCTTTATAAACCCCGTTCCACTTTGGTCACCCGCCAAGCTGATCCTTAGAAAATTCTCTTTAGGTTCCTAAGGATAACATTTTTAGTGCCTAGACGTCTAAGAGTTGTCAGTTGCGGTTGCAAAGAA # Right flank : AATGACTTCAATTACTTTTTTTCTTGAAGGAATACTTTATGTTTCCAAAACCTGAAGAGCGATTCTCTCCAACATTGCTAAATTTAGCAAATTGTGCTAGTGTATGAGCCCAAATTTTCCATTTATCTTTCCCGGTGAGTTTGTATTGCACCCATCCTTTGAAGCCTACTTTGAGCTTATTCTTTTCGATATAGGCTTTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.34, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAGCTCATTTACGAGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 28-383 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_77293_length_399_cov_0.911765- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28 30 100.0 35 .............................. ATAAGCTTGAGAAAGAGCCGAAACTTTCCAATCCA 93 30 100.0 36 .............................. ACAATTTGAGTCTCATTGACAGACAAAATCTGTAAA 159 30 100.0 35 .............................. ATAAAACCATGCCAGGTTTGGATTGCCTCAAATAA 224 30 96.7 34 ...........C.................. TTTTTGTTGGTAATAAGACCCATGAATCTCTCGG 288 30 100.0 35 .............................. ACAGTTAGCAGCGCAATCATTCCTATGGATCCAAA 353 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 CTTTTTTAGCAACTAGAAATAGATTGAAAC # Left flank : TGTCCATAATTAATCGCTTCTTTTTTTC # Right flank : CGTTGTTTTTAGTTAC # Questionable array : NO Score: 7.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTTAGCAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 26-367 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_85276_length_423_cov_1.719595- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 26 38 100.0 39 ...................................... TTCAACATGACAGATTCGCTTATAGCTGATTCCAATTGG 103 38 100.0 37 ...................................... ACTACTAATAATATGCTGATAGTAGCAAGTATGAGGT 178 38 97.4 39 C..................................... TAAAAGCAGAAGGTAAGAAACTTATCATTCATGCAGAAT 255 38 100.0 36 ...................................... AACATTAATCCTCTGATAGATCTAATTTGTATTTTC 329 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 5 38 99.5 38 AGTTGCAAATCGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CCTGTGTTTCCAATGACCAAATTTAA # Right flank : TTAGTTTCTTGACCTTCTCTCTAAGGTCTATCAATTGTTGCAAATCGTATCTCAAC # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:0.80, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAAATCGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 316-6 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_97734_length_2953_cov_6.241331- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 316 30 100.0 36 .............................. ACCAATTGTTTGATGTAGTTAGCCCATAAAGTTAGC 250 30 100.0 49 .............................. TTCATTATAACGAACAGAACAATTGTAGCCTCCTTGAAGTAAAGCCCAA 171 30 100.0 39 .............................. CCTCTATTACAGAGAATTCCTAATCCAACAATTTTACCT 102 30 100.0 36 .............................. TTATCCCTTAGTACCCAAAAATAAAATTAAAAAAAA 36 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ================================================= ================== 5 30 99.3 40 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : TATCAATATAATAAAAATTTTTGTGGAGTATGTTCTTTTGAAGAGTTTTGTTGGTTTAAATAAGCTAACGATGAAAAGAAGAATAGAAACATTTAAATAGGTAGACTTCACATTTATAAATGAGTTAAGTTTCGACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAAGACTACAGTACCT # Right flank : CAACTA # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:0.74, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 2572-2985 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_103448_length_4966_cov_5.616036- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2572 37 100.0 39 ..................................... TTAATAAAAGTACAAGCACCATCAAGGGAAACAACTACA 2648 37 100.0 36 ..................................... GTAGTAAAGTAATTGTGCTACTTTTGTCCAGTTCAT 2721 37 100.0 38 ..................................... ACCAATAAAGTCCTTTATAGATTTATCTTTAATTACTC 2796 37 100.0 40 ..................................... CATTTTATACACGTAAAAGTATATAACGATTGTTCAAGTT 2873 37 100.0 38 ..................................... TCTGGAGAACTATTAGGTGCTGTACCAGTTCCCGAAAG 2948 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 100.0 38 GTTGCAAATCGTATCTCATCTACTAGAGAATTGAAAT # Left flank : GTAATAGAGAGAATTTCAGTATTGTTAGAAAGAATAATAATACCTAAAACGATAAAAATAAAAAACGAATGAGGACGAAAATTGTTTTGATTTGACATAAAAAAATGCATATCTTTATAAATAAAAGTCAAATCAGAGATATGCAACAAAAAAGAAAATTAGAAAGCGTAAAAGAGAGAAAAACGCGAGAAAATCGAAAG # Right flank : ATATTGTGAGAAAATAAGTGCAATTAGAAGAAAAATAGGTGTATAAGATTCTAGGAGTATTTTATCGATAATTCCTATTCTCTAAAGTTCTACTACACAATATTCTTGTAAAAACTGAATGTGTCTTCCATTAATAGAAGATACTTTTTTTCTTTTAAAAAGGCTTGAAATCATAACATTTTTCATATTTAGTAATTTTC # Questionable array : NO Score: 7.61 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATCGTATCTCATCTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-329 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_110833_length_2384_cov_4.625609- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 1 24 96.0 52 -........................ TTAGAAAACGCTAAAGCTTGGGACATTATTCCCCTAACAAATTTCAATTCTC 77 25 100.0 50 ......................... CTATGTCTCATCGTTATGGTAGGTGTCAAAGACATTTAATTTCAATTCTC 152 25 100.0 50 ......................... TGGCATATGTATCCCGAACTCGATAATTGGGATGGTCAATTTCAATTCTC 227 25 100.0 52 ......................... CATCAAGATTCAAAGAGAGATAACTGCTGATGCAAATGAAATTTCAATTCTC 304 25 96.0 0 .............C........... | ========== ====== ====== ====== ========================= ==================================================== ================== 5 25 98.4 51 TAGTAGCTGAGATACTTTATGCAAC # Left flank : | # Right flank : CGTTCGATTTTCTCACGTTCTTACATGTTTCGCGCTTTCTAATTTCTCTTTTGTTGCATATCTCAGATTTGGAATTTATTTATAAAGATATGCGTTTTTTCACAGGTTGGGTTTACAAATATTTCTGCACTCGCAGTCTACACATTTCTTTTTTTTTCTATCTCTTCTGGTATAATCTCTGTTTCTATTATTTCTATTGT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.34, 7:-0.40, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTAGCTGAGATACTTTATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 5-635 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_116350_length_690_cov_2.415631- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 37 .....................C............... ACTTAAAGCTATTATTAAGAATTTATGATGTGGACGT 79 37 100.0 38 ..................................... GTGGTATTACATTTAGAACAACATTTTGGACAAATTCT 154 37 100.0 38 ..................................... GTGGTATTACATTTAGAACAACATTTTGGACAAATTCT 229 37 100.0 36 ..................................... GAATTGTCGATTAGATGTGTTAATTCATGAAATAAA 302 37 100.0 37 ..................................... TGGTTAGATTTGAATGTTAAAGCTTGTACTAATCCGT 376 37 100.0 36 ..................................... ATATGTAATGGAACACGCAAATCTCTGCAGATTGTT 449 37 100.0 38 ..................................... GCTGTGGTTGCAGTTATATCCCCATCGCAAATAACACC 524 37 100.0 37 ..................................... CAGCATAGTAAGGTTCATTTCCAGATAAATTAACAAT 598 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.7 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : AATCG # Right flank : AAAAAGAGGCTAAAAAGAATGGAAAAAGAACTTAGAGTCGCATTGAAAATAGCTT # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 4481-4818 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_119189_length_13962_cov_4.924033- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4481 37 100.0 42 ..................................... GAGTTTATTTCTACAGCTCCATCCATTTTCCTACTCATCAAC 4560 37 100.0 37 ..................................... GTATCTGGTAATCTTTAATAATGTTAATGTGCTTCAT 4634 37 100.0 38 ..................................... GTAGTAAGTTACGATCGCAGTTATTACTGCAGTATCTA 4709 37 100.0 35 ..................................... CTCAAGATATCTAGCTTTCTATGTAATTCTTCATC 4781 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 38 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : ATAACAATAATATGAACAATAAAAAACGCTTTCTTAGCGCCTTAAACGAAGTAACGTAAAAAGAGAAAAAATGCTAGAGCGCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAAGAGCGTACGCTACAACTAGTACACGAGGTAAAAGTGTAAACTGGCAAAAACGCTTACTAGAAGCAGAATCCCCGCG # Right flank : GGAGGTGAAACAATATGGGTACTTGTAGTAATTGTAATGGAACGGGCACAATATCATGCAAAACATGTAACGGAAGTGGAGAACTAGCATGCAAAACATGCAGGGGATCTGGAAGAAGTTCTTCTGGCAAATATGAATGTAATATTTGTGGAGGATACGGAAACCATACATGCAACCTTTGCGACGGTAGTGGTGACCAC # Questionable array : NO Score: 4.48 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.68, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 10347-10083 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_119189_length_13962_cov_4.924033- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 10347 37 97.3 37 ............................A........ TTATTTCTCCTTTTTCTCTTACATAAGACAGCCTAAC 10273 37 100.0 40 ..................................... AGAACCTCGTGGCGGTGGCGCTTATGAAGCATCCTCTGAG 10196 37 100.0 39 ..................................... GTATAGACATTTTGAGTTAAATAGACAGAATCAGCTCTA 10120 36 81.1 0 ........T......AA.-..........A.AA.... | G [10099] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 94.6 39 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : AAAGAGAAGGAGAAAAAAACGAAGAAGAGGAAGAAGGAGACATAAAATGGAAAAAAAAAAGAAATATATCAAGTTTTAGATAGGCAAAGAGAAGAAAAAAAGAAAAGGTTAATAAAGAAAAAAAAGAAGAAGAAAGAAGAAAAAAAAGAAGAAGAAAAAGAAAAATGGAAAAAACAAAGACTAGAAGGAAGTTCTTTGCA # Right flank : TTATGATAACACTTCGGATTCATTCTCCTTCTATCCCATAACTATTCTCTAACTATAGTAGAAGAAGAGGAGATAACTGATAATTGACAAATTTAATCATAACTCTTTGAAATGTGCAAATTGTATAGTTTTTTATAAAATAGGATCTAGTCATTTTCATGATCACACTATACTTTTTTCATTAAATTATGATTTTTCTT # Questionable array : NO Score: 3.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:1, 7:0.65, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3-262 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_131659_length_498_cov_2.770889- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 36 .................................... CAAAGTGCCCAGAGAATAAAGCCGTATTGCCAATGG 75 36 100.0 39 .................................... CGTAAACGATTGTATCATGTTCATGATCATTGGGAGCAT 150 36 97.2 40 A................................... GTCAAGCACAGTTTTACCTGTTCCATCAAGGTTTATAACA 226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 99.3 39 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : ATG # Right flank : GCTGATTGATAACTTTGTGTTTTAATGAATTTACACAAAGAAAGTTTAATAAAAAGCTTATTTAATTTGCTTGTATAGGTTAAAGTATAATTTTTAGAAGAAAAACCATATATAAATTAGAAATTGAGTACAAAACTCTTAATTGAAACATTGAATTAAAACCAAATTAAACATTAAATTATCCATCTACTCAATCTGAT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 2-341 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_150582_length_342_cov_4.353488- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2 37 100.0 38 ..................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTT 77 37 97.3 39 .A................................... AACGAGCTCTTTCATTAGAAGGGATTGTGATTCTATATT 153 37 100.0 38 ..................................... TTTGGTAATGGAATATCTGTCCAGCCTGTTCCTGTCAC 228 37 100.0 39 ..................................... GTACCATTGTTTCCCATTCAAACATCTCTCTTCTTTGAA 304 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 39 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : AG # Right flank : T # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.51, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 46-563 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_165652_length_610_cov_2.567288- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 96.6 32 ...........................T. GATTACCAATTAAATTTGTAATTAATACCATA 107 29 100.0 32 ............................. TAAATCGTTGTGAAAAGGAACGTCGTTAACAA 168 29 100.0 32 ............................. TTTTTAAACATCTTAATTTACTCCTTTTTCTT 229 29 100.0 32 ............................. TAATTTAGGAATTAAAATAAAGTTTAAAGTCG 290 29 100.0 32 ............................. ATTTAACTTTAGGAGCAGATTTTAACAAAACC 351 29 100.0 32 ............................. CACGAAGAGCTCGACGAAAAGGACGTTAAGAA 412 29 100.0 32 ............................. TATATTAAATAAAATAGAAAAGGAGGAAAAAT 473 29 100.0 32 ............................. AACGCAATATACAACGCAAGTTTAGAAGAGGT 534 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TGGGGGTGTACCGAATATTGTCCAAATTGTAAGAAGGCTATAGTTG # Right flank : CATCTGATAAACACCAGCCTTTCAATCCGATGTTGTCCCCACGCATG # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:1, 7:1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-201 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_170542_length_214_cov_2.804598- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 15 35 100.0 41 ................................... GTACCATTGTTTCCCATTCAAACATCTCTCTTCTTTGAAGT 91 35 100.0 40 ................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTTGA 166 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 41 TGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : TGTTCCTGTCACGTT # Right flank : ACGAGCTCTTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.39, 7:0.37, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 351-19 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_172747_length_385_cov_0.961240- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 351 37 100.0 36 ..................................... ATGGATTACCTCCAATTGTCCATGTTCATCTTCTAT 278 37 100.0 38 ..................................... CTTCATAATCCCATTGTTCTTCGCCACCAGACATCTCA 203 37 100.0 37 ..................................... ATAAATCCGCCATTATTATTTTTATTGTCTGACATAA 129 37 100.0 36 ..................................... ATGGATTACCTCCAATTGTCCATGTTCATCTTCTAT 56 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATATATTTGGTTTTCTATTTTATTTTCCATTTTT # Right flank : TTATAGAAGCAAATGCCAC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 15-350 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_176092_length_404_cov_0.895307- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 100.0 36 ..................................... TCTAAATCATAAATAAATGAACTTAATATGAAATTA 88 37 100.0 39 ..................................... TAAACTGAATCATCATCAGGATCAATCTCTAACCAATAA 164 37 100.0 38 ..................................... ATCACAGAAAGGACAATTAATCTTGAACATTTTCATTT 239 37 100.0 37 ..................................... ATCATTTGTCACGATTGTATCAGTTCCAGCTACCAGC 313 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CCATCAGAGTCCCAG # Right flank : CCTGAATCATTTTAAAATTAGATTCTAAATCCTTAGTCGCATTGAAAATAGCTT # Questionable array : NO Score: 7.65 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.85, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 457-48 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_180266_length_458_cov_2.996979- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 457 37 100.0 39 ..................................... TTTGGAACTTCCTTTTCAAAACAACCATTAACACATTTT 381 37 100.0 38 ..................................... AAGAGTAATCATGAGTACAGAAATGACCTTCGTTGTTT 306 37 100.0 36 ..................................... TCATAACCTTTATTCTCCAATGAAAAACAAACATTA 233 37 100.0 36 ..................................... ATTGTATTCGGGTTTTTCTGTGCTCATCGTAATTTC 160 37 100.0 38 ..................................... GGCATCTCTAGATACTTACTTGTATCATATTCGCCCCA 85 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAC # Left flank : A # Right flank : CATGGAATACCACATTCACATTTTGGAGGCAAGTTTATGTAGCAACAA # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 58-400 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_228466_length_428_cov_0.823920- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 58 37 100.0 36 ..................................... ATCATGAAGATAACACATTCAACATCTTTCATTTCA 131 37 100.0 43 ..................................... TAGAAAGGTAAGGGAGTTGTGTGATAAGCTTGGTTAAGTTTGA 211 37 100.0 39 ..................................... CATCATGTTATCTGCTTGAAATGGTTCAAACTGTTTAAT 287 37 100.0 39 ..................................... TCAAATTATAGATAGACCAAGACTCCACGATGAGGTTGT 363 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 100.0 40 GATACAATGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CTTCAAATAGAAGATTGAAATTTCCATTGATAATGATATTCACCCACTTTCCATTTTG # Right flank : TTTAATTCAACAATCCTCTCTCTTGCCT # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.57, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAATGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 219-7 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_260869_length_406_cov_1.974910- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219 29 100.0 32 ............................. AAGTTATAACATATCCCCCAATTCATTTAAAA 158 29 100.0 32 ............................. AGTATATAGTAAAACAAAAAGTCTTTATAAAA 97 29 100.0 32 ............................. AATAGATATAAACTCAAGAAGTAGGGCGACTG 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : TTTATGTATTTGCTACTTAATTCTAAGAAATTAGACTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGG # Right flank : GGAGTAT # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.51, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 470-59 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_275723_length_531_cov_2.309406- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 470 37 97.3 39 ...............T..................... TAGCTAATTTGCGTAATTCCCTTATTTCCATTAATAAAT 394 37 100.0 39 ..................................... CACAAATCCTTCAATAATCATACCAAAAATCGGCAAAAG 318 37 97.3 37 .......A............................. TAAAAAAGAGTATTGTAGAAAGTACTGGAAAAACCGC 244 37 97.3 36 .......A............................. AAGTTGTGTAAGACTTCTATGGATATTTTTATAAGC 171 37 100.0 38 ..................................... TATATATCATTTTTATCTTAACCTCTCAAACCTTAATC 96 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.7 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATAGCTTCAAATACAAGATTGAAATAAGAAAGAAGGAGAGTCATTCCAAGTGGTTATAAAT # Right flank : TGATAATACCCAACCTTTCATATGAGCTTTATACAATACTCTTTTTTAATTTCAATCTT # Questionable array : NO Score: 7.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 38-669 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_27664_length_678_cov_3.045372- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 83.8 37 T..T...G.T..T..T..................... TGTATTAATCCATTCCGTATTTTGTGTTTTGGTATCC A,TCA [42,52] 116 37 97.3 38 .......A............................. GTAAAATTTCCACTGGTTGTATGACCAAGAATCGTTAT 191 37 97.3 37 .......A............................. ATGATAGACTTGTACTCCGTAACGAGATAATCCAATT 265 37 100.0 38 ..................................... TCTATAATATTGTGTCCAGTCCCTGCTAATCGAAATCT 340 37 100.0 36 ..................................... TACCATTGAGAAGCACATTCTTCATAAAATTCAAAT 413 37 100.0 37 ..................................... GTAAACATTTGACCAGGCATCTTAGTTCTTCACCCAC 487 37 100.0 35 ..................................... AATATAATTTGAACTTCACTATTCTTAGGTAAAGG 559 37 100.0 36 ..................................... TTAACATCTTCTGCATACTATCGATTTTTGTGTCTT 632 37 97.3 0 ....T................................ | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.3 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TTTTCAATGCGACATTTGAATTTTATGAAGAATGTGCT # Right flank : TTATATCCG # Questionable array : NO Score: 7.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 361-25 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_28143_length_679_cov_2.172101- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 361 31 90.3 30 .A..................A........G. AATGTGGATTACTGGAAATTTTAGCAATTA 300 31 96.8 30 ..............................T AGAAGGGCTGTAAACCTAATCCATCGAGAG 239 31 100.0 30 ............................... TTTTGACAATGTCTTAACGGACAAACAGGT 178 31 100.0 30 ............................... AATAGTTAACATTTATTATTATTATTAACA 117 31 96.8 30 A.............................. TTTTCATTACCCTGTGTTAGATTTCAAAAC 56 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== ============================== ================== 6 31 96.8 30 CGGTACACCCCCACATGCGTGGGGACAACTA # Left flank : TGCAACACACTTATCAGCACTTCTCTGGAATCGAAACGGGAAATATTCTTGATTTATTAAATCTTTTTTAAAAATTTCTGCTCTAACTTATGGAAATAGTACAGATCAGTATTTTAACATGTGTTTAATAATAAATTTCAAAATCCTCTCAATCTAAAAATCGATCTAGTAATAAGCATTCACCAACATCGGTACTAAAT # Right flank : ATAACTGTTCAGTAAACATTTGTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.34, 7:0.34, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTACACCCCCACATGCGTGGGGACAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 10-349 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_294921_length_391_cov_0.939394- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 40 ..................................... ATAAACATTTTAATTGTAGGAAAATGAATATCTGGATAAT 87 37 97.3 39 ................T.................... TGGGTGATTCAGATAACTTTCATAGTATTCTGCGTATGC 163 37 100.0 37 ..................................... ATTTCTTCCCACGTATATAACTCAGGAACCCATAATA 237 37 100.0 38 ..................................... TAATATTTATGCTCTTAAGTAGAGCTATTACTTCTTTC 312 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 39 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATCCAAATCG # Right flank : TCTTTAAAATTACATCTAAAATTTATTTTTGCTGTTGTCGCA # Questionable array : NO Score: 7.36 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.59, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 422-16 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_315964_length_486_cov_4.821727- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 422 37 100.0 36 ..................................... CAAAGATTTTAGCAAATTGATTTGGGTCATTTTTGA 349 37 100.0 35 ..................................... AAAAATGATCTTCAAGATATCACCTCAATCAATCA 277 37 100.0 39 ..................................... TCGTGAAACCAGAAAGCATCACAGAGATTAAACCAGTGA 201 36 94.6 37 .....................-.A............. ATCAATAAGAAAAGAAGAACAAAGATTCCAATCGTCT A [176] 127 36 94.6 37 .....................-.A............. GTTGAAGACATATGATAAACATAAATCGTATAATCAT A [102] 53 36 91.9 0 .....................-.A............G | A [27] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.9 37 GTAGCAACAAAATTAGCTTCAGTTAGAAGATTGAAAC # Left flank : TAAATCAAAGAAATAGATAAAAAATTAAATACTTTTAAATATAAATATATTATAAAATAATATA # Right flank : GTTAGCAACAGCGTCA # Questionable array : NO Score: 7.74 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:1, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCAGTTAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 365-32 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_323031_length_387_cov_1.846154- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 365 37 100.0 37 ..................................... TATCTTAATTTTAAATAATCATTTAATACATAAACAT 291 37 100.0 38 ..................................... CTACTAATCAAGTTAAAATTAATATTCACATCTTCAGT 216 37 97.3 36 ..............G...................... AAGTAATGAGATAAATCGCTATCTGCCCAATCGACA 143 37 100.0 37 ..................................... TGTATTAATCCATTCCGTATTTTGTGTTTTGGTATCC 69 37 97.3 0 .......A............................. | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CACATTCTTCATAAAATTCAAA # Right flank : TGTAAAATTTCCACTGGTTGTATGACCAAGAA # Questionable array : NO Score: 7.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:1.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 322-56 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_359600_length_1499_cov_3.986880- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 322 37 100.0 39 ..................................... TTTTTTTCAATTCCTGTGGTCAATGTGGAGAGAATAAAA 246 37 100.0 41 ..................................... ATTCGCGGACCAGCTACTGCAGCACTTGCCGCTGCAGATAA 168 37 100.0 38 ..................................... CTGTTATTTCAAAATCTTCTGGAAAAATATTACTTTCT 93 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 40 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CAACTAATCATAGAAACAGAATTATTACCAGAGGAAACAGAACAAGAAAGAAAATGCGTTGACTGTGAATATAGGAATATATGTCAACCAAGCAGCTATTAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGAACGCTCCTAATAGAGAAAAACACGAGAAATTGGCTCGG # Right flank : TGCTTTCGACCGTTGGACAATTCGACATATGATAGGAAGGTTGCAAATAGTATCTC # Questionable array : NO Score: 7.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.46, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 416-8 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_50765_length_429_cov_0.821192- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 416 36 86.1 36 ..T.......GC..TT.................... TTTATATCCGCATCTGGAATTTCTGTCATAGATCTG T,T,T [406,410,412] 341 36 100.0 39 .................................... GAATTTGGCACCCATATATCCATCGTTGCAAAGTTAGAG 266 36 97.2 38 ..A................................. ATAAACATTTTAGCTGTAGGAAAATGAATATCTGGATG 192 36 100.0 39 .................................... ATGTTATCTAACATTGATTGATAATCACTAAATAAATCG 117 36 100.0 37 .................................... GCTTTCTCCAAGAGATAAATATATATAAAATAACCAA 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 97.2 38 TCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CTACTAAATTTCA # Right flank : TTTAGTAG # Questionable array : NO Score: 7.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.61, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 21-354 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_52445_length_435_cov_2.720779- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 37 ..................................... AATCTTAATGGCCCAAAATAAGGTACTGCTACTACAT 95 37 100.0 37 ..................................... TTTAGTATGTTATTAGCTGCTTGGTATGCAATTTTCC 169 37 100.0 38 ..................................... GGAGGTTTGAGTCTCGCTCTTAGTGTCGCCCTTTGACC 244 37 100.0 36 ..................................... TCTAAGTCCAAATCAAGCAAATTTAAAGTTCTTTCT 317 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TTCTTTCCAAAAACTCATTTG # Right flank : CAAATAAACCTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAA # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 1-335 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_57811_length_411_cov_1.404930- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TAAAGATATGGTCGATAGATTTAGATTATTAA 62 29 100.0 32 ............................. GACAGAAACTATATTGAGGACTACCTTATTAA 123 29 100.0 32 ............................. CACATAGCATCAATATCTCCGGCTGCAGTTAA 184 29 100.0 32 ............................. TTGTATTTGGAAAATCTAATTCTGGAATTGAT 245 29 96.6 32 .......................A..... TAGGAATAAAAGTGTGAGTAGAAAATGAAGAA 306 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : | # Right flank : TGTATTTGGAAAATCTAATTCTGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT # Questionable array : NO Score: 8.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1339-1911 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_60024_length_5008_cov_4.870928- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1339 37 100.0 40 ..................................... ACCGCTCCTATCTACGGTTTTAAACAGTCTGCTAACACTT 1416 37 100.0 42 ..................................... TTATACACATAATCAATAATATTAGAATTACAAGCATTACAA 1495 37 100.0 40 ..................................... TCTTGGTAGTTTGACATTGTTTTATCACTTTCCATAATAG 1572 37 100.0 38 ..................................... AGACTATCTATTACTTTACCTAAAAATCCTAAACCAGC 1647 37 100.0 40 ..................................... ATCAAAAGACAATATTTCTTCCAAAGTGAAATGATTAACA 1724 37 100.0 38 ..................................... CTCTGCATCGTAGATAAATGCAATTACATTAATTGATA 1799 37 100.0 38 ..................................... TCGAAGTGTTAAGAATTAATGACAAAGAAGTGCAAAGT 1874 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 100.0 40 GTTGCATATTGTATCTCACTTACTAGAGAATTGAAAT # Left flank : TATGACATTTAAAGATTTTCAGTAAAAGTAATGACTAGCTTGAATATTTTAATTTAAAACATAAACATAAACAGGTTGAATTAATAGGTTGATGAGTAGAAAAATGCATATCTTTTTAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGAACGCTCCTAATTAAGAATGACGAGAGAAATTGGCTCGG # Right flank : CATCTGTTTGTGAATCTAATCAAATCTGTATATTTGTGTGGAATTTGTTTAAACAGAAACTAATAAATGTAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCACTTAACTGTCGTAAGCTCCTGTTTAAATCTTGATATAGAATTAAATTGGTC # Questionable array : NO Score: 7.36 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGTATCTCACTTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 1483-15 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_61703_length_1547_cov_3.699296- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1483 37 94.6 37 ..................C........A......... CTGTATTTCAAAATCTTCTGGAAAAATATTACTTTCT 1409 37 100.0 38 ..................................... GCTTTCGACCGTTGGACAATTCGACATATGATAGGAAG 1334 37 100.0 38 ..................................... AATACTCTTCTTCCTCTTCTCCAAACATTTCGTTAATT 1259 37 100.0 39 ..................................... TGGTATCATTTTCATTGTGCTGCATAAGTTCCCTTTGAA 1183 37 100.0 40 ..................................... CAATTTCTACAAACAGTTAAACCTTGAGAAGTTACAAGTT 1106 37 100.0 39 ..................................... CATAATTACCTCTTGTAACAATATTATCAGTTATTGTCT 1030 37 100.0 39 ..................................... TGAACTTACAAATAACTGTTACTGGTGCTTGCACTGTTA 954 37 100.0 36 ..................................... TCTTCTAATGATTGTTGTTCAAACATTTTAATCATC 881 37 100.0 39 ..................................... TATAATATTCTTTTTCTAAGCCAATCTATGAATTTTCCC 805 37 100.0 39 ..................................... TATAGGAAATCCTCCTTAAGTTTATGTAATGATATAAGT 729 37 100.0 38 ..................................... TAAGCCATTTTGATAATTTTAAGATCGGCATAACGAGT 654 37 100.0 39 ..................................... ATTGTTTGATTAGCTCTTGAACTACAAATAGTTTTAACC 578 37 100.0 37 ..................................... AACAAATATTCTTCTGTTTTAAGTTCATTAACTAGTA 504 37 100.0 40 ..................................... CTCATAAAAATAGATCCGATTAATCTCCCTGCTGGTGGAA 427 37 100.0 39 ..................................... TTCAAATAATAACCGAGTGTCGCTTGAATAACCATATCT 351 37 100.0 37 ..................................... TTAACTAATTTCTTACGACCACAAGGAAATAGAGATG 277 37 100.0 40 ..................................... TATGAATATATTGTACTACTGAACCTTTTTTAAAGAGTAA 200 37 100.0 36 ..................................... AAGTAAAGTATGACAGCTTCATCAGCCCCACGATGA 127 37 100.0 38 ..................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTT 52 37 97.3 0 .A................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.6 38 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CACGTGACTGGAGTTCAGACTTGGGCTCTTCCGATCCCTACGGCAGCACTTGCCGCGGCGATTA # Right flank : TAACGAGCTCTTTCA # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 452-34 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_74568_length_1117_cov_2.819192- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 452 36 100.0 41 .................................... TTAAGGTCGGCAAACCGTTCGATATACGGGAGTAAAGGCGT 375 36 100.0 41 .................................... TTCTGGTGTATAATCCCAAGAAACATTTGTTCTTAAATAGA 298 36 100.0 41 .................................... GTATAAGCAATAAAGCACAATTCACTAAAACACAATTTCTT 221 35 91.7 40 ..........-.T........C.............. GATTCTCTTGAGTCGCACCCAATCATAGAATTTTCTTAGG A [215] 145 35 91.7 39 .G........-.T....................... GATCGGATATACCGCTTGTTGCATTAAAAAGATTTCTTA A [139] 70 35 94.4 0 ..........-.T....................... | A [64] ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 96.3 41 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAA # Left flank : TTCATCATATAAGTAAAATATATATTGTTCTAAAAAAAATTAAATTCAATAAAATAATATAAAAAAGACTTAATATTTTTAAAGATTATATGAGAATGCAATTTTATTGAGCGAAATAATAACTGCAATTTTCCAAAATTCAATCAAAAATACAAAGAATTAAGTATCTAAAAATCTAATTATATTAAATAATAATATAG # Right flank : AGATTTTAGTAAAAGACTCAAAATGATCAGCTAT # Questionable array : NO Score: 7.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:1, 7:0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 1298-1483 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_94570_length_2413_cov_7.003062- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1298 36 100.0 39 .................................... AAAAGCTAGCTCTCTTCTAGGTCTCTTAACAACTAAAGT 1373 36 100.0 38 .................................... GCAGAAGCCAACCAATGAGAACCTGCGCTATATCATGT 1447 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 99.1 39 TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Left flank : ACCACCTATAAGTAAGTGGATAACAATAAAGCTATTTAAGGATTAAGAAATCAAAGAAAAAGAAAAAAAAGCAAATAACAAATTAATAACTGAAATAAAGTAATTCAAGCGTAAATAAATATCAACAAAATCACTGATTATTGACGAAACTAGTTTGTATCAGTTTAAAAAAAATTTCAACGAGGGGTAGCAAAAAAAGC # Right flank : GCGGGGATTCTGCTTCTAGTAAGCGTTTTTGCCAGTTTTCACTTTCACCTCGTGTACTAGTTGTAGCGTACACTTTTTCTCTTTCTCCCTCATTCTTAAAGTTTTTGCTGTTTCTCGCGCTCTAGCATTTTTTCTCTTTTTACGTTACTTCGCTTAAGGCTCCAAGAAAGCGTTTTTTATTGTTCATATTATTGTTATTC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.76, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1068-2395 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_96782_length_4481_cov_4.416169- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1068 36 100.0 40 .................................... TTAAGATAATGCAAAAACAGTTCAAGATAACTGTCTTAAA 1145 36 100.0 38 .................................... TACAGTAATATTTTCATTGGGGAAAGTATATTCTCTAT 1220 36 100.0 38 .................................... TGCTTTGCGTCTATCTCCACAAGGTAATCAACAATGTC 1295 36 100.0 38 .................................... TTTTCACGTACTTGACAGCCTAGGACGACTACACGACT 1370 36 100.0 39 .................................... TAACATCATCATAATTTCTTCAATAAAATGTGAAACTCT 1446 36 100.0 41 .................................... TTGATATATTCCTTGGTTGCTGGTGGGACAGAAGATCCCTT 1524 36 100.0 42 .................................... TATTATTTATCGTCTAACTTGGTTTGTTTGGTCTTTTTAGCC 1603 36 100.0 38 .................................... TCATTATGCACAAAAGCCATATTACTAAACATGTTATA 1678 36 100.0 36 .................................... TGCTCGAATAATCTCTTTTACAGCTTGTTCCTTAGA 1751 36 100.0 39 .................................... TTGTAATATCATCGGTTGTGCTTCCAAGCTCAATGGTAT 1827 36 100.0 39 .................................... TATGGTCCATTTAAAGGATATGGTTTTGTTTCTCGTAAG 1903 36 100.0 37 .................................... TGCTCATTTAGATGAATTTCTATTTTGTCTTTAGACA 1977 36 100.0 39 .................................... TTCTTTGTATCGGGCTTGTGCCTCAGTTGCAGAAGCGAT 2053 36 100.0 38 .................................... CTCATTGGTTGGCTTCTGCTTAAGAAGTTTCTGCCCAG 2128 36 88.9 40 ........AA.G.........T.............. TTCCCTTTTACAATATGGACAGGCAAAATTGCATCTCCCA 2205 36 88.9 40 ........AA.G......T................. TCTCGAACATAGGTTCGGTAGGTCTTTATCCTATGCCACT 2282 36 88.9 40 ........AA.G....T................... TCTTGAGGGTGCTGACACTTCTTGTTAGTATTTCAACCTC 2359 36 88.9 0 .......TAA.G........................ | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 97.5 39 GTTGCATACTGAATCTCACTACTAGAGAATTGAAAT # Left flank : GTAAAAAAAGAGCAGAAACTATTGGAATTGGGCATAAAAAGAAATTTATTGAGTTCAGAAAATGTCTTGACTGAAAAAAGTATGTCAACCTTCAACCAATGAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAATAAAAGAGAAAATAAGAACGAGTCTAATAGAGAAAAACGCAAGAAATTGGCTCG # Right flank : TTAATAATCGATTAATTTCATAAATTATATACAAAATGAGATGTTGGATAATTCTATGATTCTCATTTATCAAATGACTCCTATTATCTAAAATTCTATCTCACAATTTTCTTGAAAAAATGAATTTATCTTCCATTAGTAGAAGATACTTATTTTCTTTTTATAAGGCTTAAAATCAAACTATTCTCTATATTTAGCTA # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:1, 7:0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATACTGAATCTCACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 762-36 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_57336_length_928_cov_1.380774- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 762 36 83.3 41 ..AAT................G..........C.G. TTAGGTCTCCAACTCATCTTTTACCTCCTTTGATTTCCATC G [752] 684 36 91.7 36 ..AA.................A.............. TTTTACTCCTTTGTCTCGCCTGGTAGTGGTGTTACT G [676] 611 36 80.6 40 TGG......GC..........G...........G.. TCAATCAACTTCTCAATAGCCTTACAGAGTGCTAGGGCTG G,A [598,606] 533 36 86.1 40 ..AA.................A..........C..T TCCACTCCACCACTTCCCTTATCCCTGCCCTGAAAGAGAG A [523] 456 36 91.7 36 ..A....G.............A.............. CCTATTCAGTTTTTAATGTTCTGCTACACTTACTAA 379 36 100.0 38 .................................... TTGCCTAGCAGTTCAGGTATTGGATGTTTGGCTATCGT C [367] 303 36 100.0 42 .................................... ATTGTTTCCTCCTTTATTCAGGGTGAGGGCTGGTAGTTTAGC 224 36 100.0 38 .................................... TTCTTGATTGGATGCCAAACCACATACTCGCTCCCACT 149 36 100.0 40 .................................... ATTTAGTTACACCTCAAAGGATTTGCTCCTTAACTTTCAT 72 36 97.2 0 .....................C.............. | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 93.1 39 GTCGGAAAGAACTAATCCTCGTAAGGGGATTGAAAC # Left flank : AGCAACTGAAAACTATTAATGCCCTCGCTGATTTTGCTTTTTACTCTGGAATTGGTGCTAAAACTACTATGGGAATGGGACAGGCAAGGAGGACAAGATTTGGGAGTGCTATATCTAACAGAGCAAGGGGCAACTCTGAGGAAGGAGGGTGACCTCTTTATCATAG # Right flank : CGTTGACAAGTAGTGGTCTATGTCCTGTAAAATAGA # Questionable array : NO Score: 6.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:1, 7:0.48, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGAACTAATCCTCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 370-31 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_73095_length_434_cov_1.394137- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 370 37 86.5 38 TGAAC................................ AGCTTTTAAGTTAGTCGCTTCAGCTTCAGCCTTGACCT 295 37 100.0 42 ..................................... TAAGAACAGAAGATATGTCCATGACTATGTGAAGTAGCATAG 216 37 100.0 36 ..................................... CATATAGCAGGATTGCGTATTTAATTTTCTCTCTTA 143 37 97.3 38 .........G........................... TGCTCTGTCAGCCCTGTGCCTTGGAAGTCGCCCCTAGT 68 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.2 39 GTCGGAAAGAAACTAATCCTCGAAAGGGGATTGAAAC # Left flank : GGGGTAGTGAAAATTGAGGTAACACCTTTGTGAGCCAAAAGGCTTAAAAGAAGCACCTTAACAA # Right flank : CTCAATCCTCATACTAACCTGCTGGCGTGGC # Questionable array : NO Score: 7.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:1, 7:0.68, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGAAACTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : GTCGGAAAGGAACTAATCCTCGAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 1-360 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_196971_length_497_cov_1.337838- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 1 27 100.0 39 ........................... GAAAGAGAACTAGAAAGAGATGAGAAAGAACGGGAAGTA 67 27 100.0 40 ........................... GGTATGTCTGTACATAATGTACTTGTCTTGAGATCCGGTA 134 27 100.0 39 ........................... AGACTAGAAACAATCAAAATTAATAAAAGTACTAAAGTA 200 27 100.0 40 ........................... AGATTCATTTGGTCAAAATTAACAACTGTTGAAGTGTGTA 267 27 100.0 39 ........................... GAAGTCAATATAAACTGTTTCAAAAGGCATTGAAGGGTA 333 27 85.2 0 ...C........C.C.........T.. | ========== ====== ====== ====== =========================== ======================================== ================== 6 27 97.5 40 TAAATCAGACCATTATGGGATTGAAAT # Left flank : | # Right flank : ATACTCATATTGATAATAAAGGACATGTCCTAATTACTTAATCTCTCTGAAAATGTAACTTCATAACTACAAATAAGTGTGAATCTGTAATATCTTGGAAATTACTATTTCTAAAATTATATCTCTTCCAGATATGT # Questionable array : NO Score: 9.50 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.28, 7:0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 896-2 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_27208_length_952_cov_3.261818- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 896 30 100.0 36 .............................. TATCCAAACCATAAATCACATCTTTTACAGTATAAC 830 30 100.0 36 .............................. GAAGATTTCGTAACTGCAATGGGGAAACAAGGATGG 764 30 100.0 37 .............................. GAGAAATGAAAGGGAAAGAAAAGATGATCTCAAAGAT 697 30 100.0 36 .............................. GGAGATTCTTACATAGCAGAATTTATGCAGAGAGAC G [695] 630 30 100.0 36 .............................. ACATAATGAATTTTCATTTCTTCAAGAACTTTTACT 564 30 100.0 36 .............................. TCAAATCTCAGTTCTAATCCAGTCCACCCTGGTTCA 498 30 100.0 38 .............................. GATTTAAGTGGTTTTGACAATATCGACAACGCAGGAAT 430 30 100.0 35 .............................. GATAAGAATTGACTTGGGTACTAGCAGAAATGCGG 364 30 100.0 36 .............................. ACTAAAGTATTCGATTATGCAGCTAGTAATACTCAT 298 30 100.0 36 .............................. TATTAACTGTAAAGACTTGGTGAACGTCTATTATCT G [295] 231 30 100.0 37 .............................. TCAGACGATTACTTCAATCTCTATTGTACTAGTAATT 164 30 100.0 36 .............................. GCTGTAGCTAGTTGTTCTTCAGTAGGGATAAAGAGT 98 30 100.0 36 .............................. GTGTATTTATGTATGCATAGGTATTTTCAATTGCTT 32 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CGTTTTTTAATTGTAGAAACAAGAAAATAATAGAAAAAAACACATGAAAATCGCCG # Right flank : TG # Questionable array : NO Score: 10.97 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 60-489 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_32633_length_503_cov_3.010638- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60 30 100.0 36 .............................. GTGTATTTATGTATGCATAGGTATTTTCAATTGCTT 126 30 100.0 36 .............................. GTAAAACTCCAAATTGGTGTATAAGCTGATATTATA 192 30 100.0 37 .............................. CAAAGAGTTCCTTAACTGAAGGAGGGATATTAGATGA 259 30 100.0 37 .............................. CTACCAGAACCATCAGGAATAGTAGAATTTGTATAGG 326 30 100.0 36 .............................. ATGAAAAAACTATGTTATGATCTTGAAGGTAAACGT 392 30 100.0 37 .............................. TCAGTTACTGCTTCCGTATCATAATATTGTCTAAACT 459 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CTCTTTCCCTACACGACGCTCTTCCGATCTCTAGTTGTTCTTCAGTAGGGATAAAGAGTG # Right flank : CTGTAGATTATGAT # Questionable array : NO Score: 11.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 50-465 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_159305_length_515_cov_2.237113- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 50 36 91.9 38 ...........-G.........C.............. ACCTTCTTCCAGTTCTGTTTGAGCATGTCCTGTTGAGT C [59] 125 37 100.0 39 ..................................... GTAGCGAATCGTCTTATCCATGATGACAGACTCCCACTC 201 37 91.9 39 .........CAG......................... TTTTATCCTCCCTCTTACTATAGTTTGCTCTAGTAATCA 277 37 100.0 38 ..................................... CTTATCTCTTCTTGTTTAGTCATAAACACCTCCTTCTC 352 37 100.0 39 ..................................... TTCAGGTACTATGGCTTTAGTCCATTTGCCCACAAACTT 428 37 94.6 0 ...C......A.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.4 39 GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Left flank : GACTGGGAATCACCCCCTCGAAAAACCTGTTTATCTTCAGATAGGCGGTG # Right flank : CATAGCCCCAGATATGAACGAAGCCTATCTCGTAGATGTCAGAAAGAACC # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 365-34 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_207353_length_415_cov_0.861111- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 365 37 100.0 36 ..................................... AAGAGATTTGGATGTTCTTTCTCTTCGACATATAAT 292 37 100.0 37 ..................................... TCTTTTTTAGAACTTTTTAGATCACTAATGCTTCTGA 218 37 100.0 37 ..................................... CTATGCTTAGAGAGGGCAAAAGATTTATTGCTTATAC 144 37 100.0 36 ..................................... ATTTATTAGAGCAATTACACAGGGCAAGCTCTTTAT 71 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAGAAGATTGAAACTATTTTACTTGCTTTTTGGCTTCAGTAGACCATTGT # Right flank : CTAAATATATCTGGCCATTTTAATTCGGCTAATC # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 393-61 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_291050_length_394_cov_1.857678- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 393 37 100.0 39 ..................................... AGGAAAAAAAGAGTAATTAATTAATTTTTATTTTTTTTA 317 37 100.0 37 ..................................... TATAATTCATCTTTTGCGTCGTAAATTTCTTCTAACT 243 37 100.0 35 ..................................... TAAGTTCATCAGACCTCGTTTCTTAGGCTGTTCAC 171 37 100.0 36 ..................................... TCAGGCTCTATTATCTCAATATCCTTTAACACATCA 98 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 37 GTTGCAATAAACATAGCTTCAAAAAGAAGATTGAAAC # Left flank : C # Right flank : CAGGAAAAAAAGAGTAATTAATTAATTTTTATTTTTTTTAGTTGCAATAAACATAGCTTCA # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.93, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAACATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 333-69 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_339160_length_379_cov_0.984127- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 333 41 100.0 33 ......................................... TCATAAAATTCTTTCGGTGGACTTTTATAGGGT 259 41 100.0 34 ......................................... TAATACTATTAATACCAATTCTCCGACGATCATT 184 41 100.0 33 ......................................... ATTTTACTTCCCTTAAGCTCTAGTTTCAATTGA 110 41 95.1 0 ..TT..................................... | ========== ====== ====== ====== ========================================= ================================== ================== 4 41 98.8 34 TTAAGTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAGAAGATTGAAACTTCATTTTCTGGGGTGAGTTCCCTTTTTTTTT # Right flank : CTTATTAATTTCAAATGGTATCGTTCCGAGTAGATCAGGTTGCATTAAATATAGCTTCAAAAAGAAGAT # Questionable array : NO Score: 6.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.65, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAGTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 8-345 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_377297_length_413_cov_0.867133- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 37 ..................................... AGACAGTGATTTACGACGATTGTGTTTCCATTTTCTT 82 37 100.0 36 ..................................... TTCTATTAAACCCTGGTTTAAATTAGATTTGTAACC 155 37 100.0 39 ..................................... TTCTTTGTCTTCGTTGATTCTTCCGTTCACGCTTCTTTC 231 37 100.0 40 ..................................... ATGATATCGTCCGCCATTTTTTCGACTTCAGAAATTTCTT 308 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : ATAACTAG # Right flank : CCTCTGCTAAGTCCATTGTTTTGTTATTTATGATATGTTGCAATAAATATAGCTTCAAAAAGAAGATT # Questionable array : NO Score: 7.57 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.77, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 53-388 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_388704_length_422_cov_0.840678- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 53 38 100.0 37 ...................................... AATAAGAAAGAGCTTCATCAAAAGAACAGGGATCATC 128 38 97.4 35 C..................................... GAGGATTATATCTTTTCATTTCTATCATATATAAA 201 38 100.0 36 ...................................... AAATAGTAAGTTTTCTTTCTCTTTATTTCTCTTTTC 275 38 100.0 37 ...................................... CTGGCGTAAAATCTTTATTATTTCTTCTTTAATTTCC 350 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 99.5 36 AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TCAGTAAATATTAAATAGTCGTTCTTTTTAATATATAATATAAAATAATAAGA # Right flank : CTCCCTTACCGGAAGCTGACCAGTAACTGCCTTG # Questionable array : NO Score: 7.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:1.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 54-399 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_100534_length_1597_cov_2.487075- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 54 38 100.0 39 ...................................... CTCTTTCATGTGGCCTCTACCTGTCTGAGTGATCACTAC 131 38 100.0 40 ...................................... GTATAGAAAACAAGAAATATAATAAAAATGCATTGAATGC 209 38 97.4 38 .....................................T AAAGGCATTGAATTTGTAACCAATTCAAATAAATCTTT 285 38 94.7 38 ......T..G............................ ACTTCAACAATTGTTTTTTCATTACCATCTGTTGGTAA 361 38 94.7 0 ......T..G............................ | Deletion [398] ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 97.4 39 GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAACA # Left flank : CTAGTAAATGCAACTCAAAACGTTGTTGCATTATTTCTGATCCTGTTAATTCCG # Right flank : GGAATATACTAAAATTGCATTAAATGCAACCCTGTGCTGTCGTTTGCTGTCGTTCAGCTTTTAAACCTTTGTTACTTTACGTCTTAACCCCCCATCTTTTTTCTATTATTGGTTAAGTAATTTCAGTGATTTTTTCTTCGAGGGAAAGAGACTTGAGACGAGAGTTTTTTATTGTTGGGTAATTATTGGCAGGGGAAGAG # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.29, 7:0.48, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAACA # Alternate repeat : GTTACATTTGATGAATCAGTAAGCTAGTAAATGCAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 49-377 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_105501_length_393_cov_0.928571- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 49 37 100.0 36 ..................................... TTTGTAAGCCTCCTTTTCCATTCTTGCTACCTTCTG 122 37 100.0 36 ..................................... AGTTGCCTGTAATAAGACGTTTCAATTCTTTGTCTG 195 37 100.0 35 ..................................... GAATAGAAGAAAACATAAATAAATTAACTTAAAAA 267 37 100.0 36 ..................................... TTATCGAATTCGTTTTCAATCGCTGTTACCACTTTT 340 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : GATTGAAACCTAGAATCGCCATTTTCCCAAGCGTTTGCTGATATTTATG # Right flank : TTGATGACATTTTTTT # Questionable array : NO Score: 8.04 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.24, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 12-420 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_234101_length_474_cov_2.144092- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 37 ..................................... TTGATTTAGTGTACACAATGCTGGTACGTACCTTTTG 86 37 100.0 37 ..................................... AATTTTCTGTTTCTGTTCTGGTTTCCGATAATATTAC 160 37 100.0 36 ..................................... TCCATCGTCCGAGTATTTATAATGTCCAAAATTCCA 233 37 100.0 37 ..................................... AAATAAAAAATTTTTTGTTTGATGAAGAATTATATAG 307 37 100.0 39 ..................................... TTATTTCTATTACTTCTTTATCTTTCATTTATTATTTCA 383 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TCCCTTTATTTG # Right flank : CTGATTTAATGCTTGCTCCTCCTGAGCTTTTTTTTTGTTGCATTAAATATAGCT # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 29-438 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_261805_length_465_cov_0.733728- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 29 37 100.0 36 ..................................... GTAAATAATCCATAGGATCGGAGACTCCACGTTCTT 102 37 100.0 38 ..................................... TGAGAATACCCACTCGTAAATGGATGGAATTGATTCCT 177 37 100.0 37 ..................................... TAATCGGTTTAATACTGTTTGCTATAATAATAACTCC 251 37 100.0 38 ..................................... TTGCCTTTCCAAACGATTTGCTGAACCACTTTCCAATT 326 37 100.0 38 ..................................... GATGCCAGTTTCACCATTCCAATCTAACAAAAGAATAC 401 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TAGATCGTCGTCCCTCTTTTTAATAAAAG # Right flank : TAGGATTTTTTGCCTTTAAGTCATCAT # Questionable array : NO Score: 7.79 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 63-395 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_324541_length_399_cov_0.911765- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 63 37 100.0 37 ..................................... TGCTAAATCTCCGAACTCAGCAATAAGTGGACCTAAC 137 37 100.0 37 ..................................... GTGTTAATTTCTCACTCCCGCCAGGAGAAACACTTTT 211 37 100.0 37 ..................................... GCATATAAATGCTTCCTTCTTCATATCCGATGGCTTT 285 37 100.0 36 ..................................... TTTTTCATGTTTACATTTTCTTTGCACATTTATCTC 358 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TATAGCTTCAAAAAGAAGATTGAAACTTCCTTATGGTATAGGTCGTGATATAGATTGAGACCG # Right flank : CTAT # Questionable array : NO Score: 7.92 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 437-206 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_400735_length_449_cov_1.105590- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 437 30 100.0 36 .............................. TGGGAAACTCTTACGACACAATCTGCGCATTGTTTT 371 30 100.0 36 .............................. GGTATAAGTTTTCTAACTCTTCCTTTACTTTTTCTT 305 30 100.0 36 .............................. ATTTCTTGCATAGATTTAGCAAGTTCTGCTATAGCA 239 30 90.0 0 .........................T.T.C | TCT [214] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CGATCTAATAAC # Right flank : CGTTATTAGAGTTGTGCACATGGTTTTGAAATAGGGATTTCAATCCCATAATGGTCTGATTTATACACCTCTGGAGAAGTTTATTCGATTGTTGCGTCTTTGGCTTTCACTCCTGCAATTGTCTGATTTGTAGTTTTCTGCACTCATTCTGTATCGCAAACTCTATTTTGTTGCTGTCCCATAATGGTCTGATTTATACA # Questionable array : NO Score: 10.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.99, 7:1.51, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 258-74 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_538138_length_422_cov_1.681356- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 258 37 100.0 37 ..................................... TAATTGCTAAATGCTGATATACAAAATAGTCATTTTG 184 37 100.0 36 ..................................... GATCGACGTTGAATGAGTGACGAGAAAAGTTTTTAA 111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TACATCAAAAAATGCTATGATCTTATTATGTGCGGAAGAATTTTACGGGTAAAATTATACATTTGGATAATTAGATAGAGAATTTACTATTATTGGACAAAATCAAGTGAAATCAGTAAATATTAAATAGTCGTTCTTTTTAATATATAATATAAAATAATAAG # Right flank : CATTTTAATTTTTTTAGGATGAAGCTTAATCTATCCACTTCAGTTGCAATAAATATAGCTTCAAAAAGAAGATT # Questionable array : NO Score: 8.19 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.79, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 39-765 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_92933_length_821_cov_1.749280- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 39 37 100.0 39 ..................................... ATAACAATCTCTCCTTCCCTAACACTGACATTTTCTTTT 115 37 100.0 40 ..................................... TCATCATGTCTTTATGTAATTCTAAACGTGCTAAAGCAGT 192 37 100.0 39 ..................................... ATTGAAAAGAAGCCAACAAGAGCAAAACGAGAAGTTCGA 268 37 100.0 38 ..................................... AAACGGAATATATGAAGGGTTAGAAGAGTTTAAAGCCT 343 37 100.0 42 ..................................... TACAAGCGAATAAAAATCGAAGCTATAAATGCTGATCTTGGA 422 37 100.0 40 ..................................... CAAACTAAACAACATTCTTCTTTTAATCCTCTATCGATTT 499 37 100.0 39 ..................................... TTATTATCTATATACATTGGTAAGATGTGTTCATAACAA 575 37 100.0 39 ..................................... TGCTCTGCACTTAATAGTTGCGGGAATATATCTAATCCA 651 37 100.0 40 ..................................... TGTCAAACATTTTCTTTCACCAGGTATAAGTTTTCTAACT 728 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : CCAATATATGCTTTTTCTAACGCTACTGAACAATTAGAG # Right flank : TCTTTATTACGCCCATAATTCTCAACATGTTACACCTGTTACAACTAGTATCTCAA # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 15-356 **** Predicted by CRISPRDetect 2.3 *** >lcl|40H_NODE_127092_length_394_cov_0.835206- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 100.0 36 ..................................... GCAAACTCTGGTCAGGGTCTAACTGGACATAGCCGA 88 36 94.6 44 ..........A..........-............... TGAATTTCGCCTGCCAGCCGTTTCACCAGTGCCATATCCTTTGC G [113] 169 37 97.3 38 ..........A.......................... CCATAGCCCCAGATATGAACGAAGCCTATCTCGTAGAT 244 37 100.0 38 ..................................... TTGATTGCTTCGTCTATGGTCATCTTCCCCTCCTTCCG 319 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 98.4 39 GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Left flank : ATACTTCACCTCCCG # Right flank : CTTTACCTGTCCTAGTTATCTAGGAGACGGCGATAATG # Questionable array : NO Score: 7.39 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:1, 7:0.67, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 121-376 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_266008_length_398_cov_2.129151- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================================== ================== 121 27 96.3 48 .......................G... TCACCGTCCTTACTTTCCTTTATGTTTTTCATCTTCATGTCGGAAAGA 196 27 96.3 48 .......................G... ATTACCGTGTCTTTCGCTTCCATATTGCCCTCCTTTTTGTCGGGAAGC 271 27 100.0 51 ........................... CTTAGGTACCGCCCGTAGGCTTCATCGAATTCTGGAGTTGCGTCGGAAAAA 349 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =================================================== ================== 4 27 98.2 49 ACCTAATCCTCGAAAGGGGATTGAAAC # Left flank : CTGTGTAACCCCCTCGCTATCTGCACCTTAACAATAGAATAGTTATCAGCCCGATAGAGGACACAAACGAAAACCCGCTCGGAAAATATATTCAGAAAACAAAGCTGGTTGTCGGAAAGAA # Right flank : CTTGCCCCCAAATCCAGGCGAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.28, 7:-0.13, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : ACCTAATCCTCGAAAGGGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 3627-2910 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_76352_length_3687_cov_3.598315- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================== ================== 3627 31 96.8 43 ................G.............. TTTCTTCTCCTCTGGCATCTCGCCCCGCTTTAAGGCTTGTCGG C [3619] 3552 31 96.8 45 ................G.............. CCTCTCCAATTCACTCTAATTCCTCTAGAGTCAGCGGAATGTCGG C [3544] 3475 31 100.0 43 ............................... TTTCTCTAACCTCTCTTTGAGGAAGGCTTGCCATACCCGTCGG C [3467] 3400 31 96.8 42 .......C....................... TCGGTAAATCGAATATCATTGGGGAAGTCAGTGCATGTAAGA C [3391] 3326 31 90.3 45 ..G..G..........G.............. AGTATCTCAATGGCTTTGTCTATGGTCATTTTTCACCTCGTCGGA 3250 31 100.0 45 ............................... AAGTCTGTCCAGTTCAGCCCATAGTCTGTTGAGCGAAAAAGTAGG 3174 31 100.0 44 ............................... GTGTTGCCGTTGGTTGTGTAAAATATACCTACCTTACAAGTCGG A [3167] 3098 31 100.0 43 ............................... CAGCCACACTTGTCGGCTATTATGGAGAGGATTTCTTGTAGGA A [3091] 3023 31 90.3 51 ..G..G...........G............. TTTAGTAATTCTGGATTCTCGTAGATGTTGCCTATGACTTCGCTCGTTGGA 2941 31 96.8 0 .....G......................... | ========== ====== ====== ====== =============================== =================================================== ================== 10 31 96.8 45 AAAGAACTAATCCTCGAAAGGGGATTGAAAC # Left flank : AGGGGATTGAAACCCTTGCCCCCCAATCCAGGCGACTGCACCCAACAAGATCACTTGTCG # Right flank : CTCGCCCGAGGTCGTTGCTGTAGCTCGCCAAGCGTGCGCATAGTTAGGAAGGTCGTTGGTTCCTGAAAGAGACAAGAGCGAACACAACAAACCGACGAATTGTGCAGTTTTCTAGCTACCTTCAAGCAACAACTAATAACCCCTATTTACAACAATTAGCAAGGCGAGTGGATAAGAATCAACAAAACGCTATAATATCT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.34, 7:0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGAACTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : AAAGAACTAATCCTCGGAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 1220-501 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_103292_length_1276_cov_3.725849- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1220 37 100.0 39 ..................................... TTGATACCGAAACTTATAGAGGGCAAGCCTATTTAATGA 1144 37 100.0 39 ..................................... TCCTTAAAATCTCATCAGACAAGATTGAGTCAAAGTTGA 1068 37 100.0 40 ..................................... TCTCCTTTCCTTAGCGCCTATTCCATTTTCATTATTAGGT 991 37 97.3 38 .....................T............... AATAGGTATAAGGTTTTAAACCAAATTTGGTATTGAAT 916 37 100.0 37 ..................................... ACGATCTATCTGCTAGAACCACTTCATAGTCGTACCA 842 37 100.0 41 ..................................... TGCTCTTTTGTCTGCAGCTGCAAGTGCAGCCGTCGCAGGGC 763 37 100.0 37 ..................................... TTTTTTAAGACTAGTATAATTAAAAAGTTTTGAAAAA 689 37 100.0 38 ..................................... TATTTTATCGTCCAAAGAACGACGAACAGCCTCTGCTC 614 37 97.3 39 ..........A.......................... TTGACAGATTCATCAAAAGAGACAGAAACAGTAATAGTA 538 37 94.6 0 ....................GT............... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 98.9 39 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : GATCTGTGAGAATTGAAATTAGACAGCCAAATATTAATATTCCAAATATCGAACAG # Right flank : GAAACAATTCCATCAACTACGATTAGATGGTATTCCTAAAGGACTGGGAAATACACTTGCATCACTTACAAACAAATTAGTTATTTTAGTCTCCTGATTATCATCTACTACTTTTCCTATTGGAGCTGTACAACAAGGATGACCTGATTCATACACTCCCCTAGTTATTGTCTCTGGTTTTGCTCCTGAAGCTAGCAGTA # Questionable array : NO Score: 7.42 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 672-265 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_108869_length_813_cov_1.303207- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 672 37 100.0 35 ..................................... AAATACATTATAGGTTCTTTATTCCGACCAGGAGT 600 37 100.0 37 ..................................... TTCAAACAAAGAGACATCACTGCTATTGATGTACAAA 526 37 100.0 35 ..................................... TCAACCTTTTGATTTTTTTATTTTTTTTCTATTAA 454 37 100.0 40 ..................................... TTTTCCAAGATTTTGGTTCCTTCAACGTTCAAAAATACAA 377 37 100.0 38 ..................................... TTATTTTTCGCATTTTGTCACCTAATATCGTTTTATTA 302 36 94.6 0 ......-.A............................ | A [291] ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.1 37 GTTGCAATGAACATAGCTTCAGAAAGAAGATTGAAAC # Left flank : TTAAAGACTTGATTCAAGATTAATTTAAATTAAAGATTCGTCTAACGACTCTTTTTCTAAAGAAAACTTGACCCTACATATTTTTCCTAAAAAAAAGAATAAAGATTATATACTCGAAGTTTCTTATTATATAAATATAAG # Right flank : TAATCAATTAACTAAATCAACGTTTCTTTTCAAAAAGGAATTATAAAATTATGTCATAAATTATCTAAAATTAGGAAGGAGTAAATCTTCATAATTAATTTCTATTCCACAATACTCACATTTATTTTGCCCTATCTTTAAAATCTGATTATTACAGAATTGGCATTCAGAGAATTGTGTTAATAGATGATTAATTTTTC # Questionable array : NO Score: 7.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAGAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 4338-4758 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_120241_length_15392_cov_5.856993- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4338 37 100.0 39 ..................................... TCAAAACATTGTTGCATTATTTCTGATCCTGTTAATTCC 4414 37 100.0 40 ..................................... ACTCTTTCATGTGGCCTCTACCTGTCTGAGTGATCACTAC 4491 37 100.0 41 ..................................... AGTATAGAAAACAAGAAATATAATAAAAATGCATTGAATGC 4569 37 100.0 39 ..................................... TAAAGGCATTGAATTTGTAACCAATTCAAATAAATCTTT 4645 37 94.6 39 ......T..G........................... AACTTCAACAATTGTTTTTTCATTACCATCTGTTGGTAA 4721 37 94.6 0 ......T..G........................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 98.2 40 GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAAC # Left flank : TCTGATCCTTACCAGGTTGTTGGAAATTTCTAATAATGAAAATCTTAAATTTCTTTACAGGGATATATCTATTTCTAAATTAGAGCCAATTTAATCTTTCGTTAATCTTTCGTTTCAGATGTATTTTTTTGTATGTTGGTTATCATAAACTTATCAAAATGCACTTTTTCTTCCGTTAGTACCACTGTGCGTACAACGGT # Right flank : AGGAATATACTAAAATTGCATTAAATGCAACCCTGTGCTGTCGTTTGCTGTCGTTCAGCTTTTAAACCTTTGTTACTTTACGTCTTAACCCCCCATCTTTTTTCTATTATTGGTTAAGTAATTTCAGTGATTTTTTCTTCGAGGGAAAGAGACTTGAGACGAGAGTTTTTTATTGTTGGGTAATTATTGGCAGGGGAAGA # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:1, 7:0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAAC # Alternate repeat : GTTACATTTGATGAATCAGTAAGCTAGTAAATGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 53-389 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_134667_length_427_cov_0.823333- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 53 37 100.0 37 ..................................... TTTCAAAGCTTCTTTGTCCAGATAGACACATAGTCTT 127 37 100.0 38 ..................................... AAAAATTATTTATATTTATAATTTTTTGTTTTCTCCAC 202 37 100.0 40 ..................................... TGTGAAGATATTTTTTAGTTAGGGAGAATAAATATGACAA 279 37 100.0 36 ..................................... AAAAAAAAGAAGAGTTTAAATAAATTCTGATTTTAA 352 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GTTGCAATGAACATAGCTTCAACAAGAAGATTGAAAC # Left flank : CAAGAAGATTGAAACTTTAAATCCTTTTTTTCCTTCTGTCCATAGATTTAATG # Right flank : ACAACAAGGTTCTTCAATGTTCATATTAATATTCACAG # Questionable array : NO Score: 7.62 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.82, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAACAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 23-356 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_137676_length_416_cov_0.858131- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 100.0 36 ..................................... ATGCTATGAATAACGCTAAGCCTATAAAGAAGAATG 96 37 100.0 39 ..................................... TTTTGGACCCCTCATTACTTATTTTTTATAAAATGAATT 172 37 100.0 36 ..................................... GAAATTTAGGTGATCGTTGTAGATATCAAAAATTTT 245 37 100.0 37 ..................................... TTTTTCGGTTAAATTAATTTATTAAAAATACTCATCA 319 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TGGTTCGTAAAAATCCATATTAG # Right flank : TCTTTTAATCTGACCAAAAATTCATCTAAATCTTTTGTCAGCTCTCTGAGACTCTGAATT # Questionable array : NO Score: 7.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:1.03, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 7-197 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_155080_length_407_cov_0.885714- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 38 ..................................... GTTGGTTATGTCAAAATAATAAATGTTTGCATTTTATT 82 37 100.0 41 ..................................... TAGCATCAATTTGTGTTCCGAGCGATCCGTTTGCTCCTGCA 160 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 99.1 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : ATCAACG # Right flank : TTATCTATGAAAAAAACAGCTGTGTAGCTCAAAAATAGAAATAATCCAAATTTTCTTCTATCAGAAAAGTTCAAAATCTCTAGAAATCAATTTATTTGTTAATTCTTGTTAGATTCCTAAAATCTTGATATTTTCTGTTTTTCTTATAGTAATTATAGTTTTTTCTAGTAGAAGAAACTCTTCTTATACTTCTGAGAAAT # Questionable array : NO Score: 6.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.61, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 37-369 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_156822_length_379_cov_0.984127- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 37 38 100.0 36 ...................................... AAAAACAAACTGGCTTTGAGTGCGTAATTGCATCTG 111 38 100.0 36 ...................................... GTTATTAATTCATATATAATTATGTATACCATTCCA 185 38 100.0 35 ...................................... TCTTTAAAGGAACGAATCAGACTTGCGTCCTTAAC 258 38 100.0 35 ...................................... TTTTTTTTTCTTTTTTATTCATTTTCTTTCCTCTT 331 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.5 36 AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TATATTCATTAAGACTTTCTATGTAACATACCTTTAA # Right flank : TTGACAAGAT # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:1.14, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 404-65 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_182821_length_445_cov_1.559748- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 404 37 100.0 38 ..................................... ATAAACTATTTCAAACTCTTTCTTTTTTGGTATTGTTT 329 37 100.0 39 ..................................... ATATCATATAGAAGTCTGAAAGAAAATCTATCATTTTCT 253 37 100.0 38 ..................................... TTGGATGGTAGACTAAGATATATTTATCGTTGTTTATA 178 37 100.0 39 ..................................... TGCTGTTTTGTGGAGCTTCTCTCAAGCTCATCTTTTTTA 102 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 39 GTTACAATTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : ATGAAAAAGAAGGAAAAAGGGTATTTATTGTAAGCCCTCTG # Right flank : TTATCATAGTTTTTGTTGTTGATATTATCGAGCATATCATAAGTTACAACTAGTATCTCAATGTA # Questionable array : NO Score: 7.31 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.51, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 65-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_208511_length_434_cov_2.785016- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 65 37 100.0 38 ..................................... AGCCTTTATCTCTCTCTCGTATATACTCTCTTTTCTTA 140 37 100.0 42 ..................................... GATGATATAACAGTTCCAGGTTGGGTGGAAGAGATTATCGCA 219 37 100.0 39 ..................................... TATCTACGTTGTTAGAACAGGAGAATTTACTGTTGCAGA 295 37 100.0 40 ..................................... CAGTAGTACTTGGTTCTATATTAGAATTAATTCTCATATC 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TCTCAATGTAGTGAGAATTGAAATCAGTAGTACTTGGTTCTATATTAGAATTAATTCTCATATCG # Right flank : GCCTTTATCTCTCTCTCGTATATAC # Questionable array : NO Score: 7.16 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.36, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 550-45 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_209214_length_572_cov_1.950562- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 550 30 100.0 37 .............................. TGCAAATTGCTACAACTGTGATATACATGTAATCTGA 483 30 100.0 36 .............................. TTGTTTATCTTTCCAAATGTCATACCAAGACATGAT 417 30 100.0 43 .............................. ATATAAAGTTGATCACAAAGAGAGGTAACCGGGTTATATTATC 344 30 100.0 37 .............................. GTAACTGTAGAAATTGAACTGTCGTGAGCATTACCGT 277 30 100.0 38 .............................. TCTTCAGTTGATAAGGCACTTGTTGTTGCACTAAAACA 209 30 100.0 37 .............................. CACTATGAAAAGAATATACCTTTTCTCCTACAAAAAA 142 30 100.0 37 .............................. GAAGCTAATACATCAAAGAGTTCAAGAACAAAGTCTT 75 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 8 30 100.0 38 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CATATTCTGTTTCTCTTATCTG # Right flank : TAAGATTACAATATTGTTATAATAGATGATGCTATAGAGTATAAA # Questionable array : NO Score: 10.77 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 17-514 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_237278_length_534_cov_1.186732- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 40 ..................................... CACATACACTACCGCACGCAAAACGCTGATGCAGTAGGTG 94 37 100.0 41 ..................................... GGTTATCAAACAGAATATTGGGTTTGTAATCGCACTTTTTA 172 37 100.0 39 ..................................... TGATACGTTATTCTTAACATCTCTATTCCCGTTAACACT 248 37 97.3 39 ................................A.... GATGGCGCTACAGGAGTTAAATTTTCAATAGCAGATTTT 324 37 100.0 40 ..................................... CTTATTGCTATTTTCCTCCCGTTATACAATGTAAGACAAT 401 37 100.0 39 ..................................... TTCTTTAAATCTAATCCAACTCTAGTTCGTGCTTTTCCA 477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 99.6 40 GTTACAATTAGTATCTCAACATAGTGAGAATTGAAAT # Left flank : TCATAAACGATAGGTGG # Right flank : AACCAGCAAAAGATATACCA # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAGTATCTCAACATAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 627-54 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_24002_length_859_cov_2.021858- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 627 37 100.0 41 ..................................... TGAATAATTGGTATTCTTTTTATCAACAAGGTTTTTGTTAA 549 37 100.0 40 ..................................... GATATCAAAGAAGTGCTAGTAAGTGCATCAGCTGCATCTA 472 37 100.0 40 ..................................... TGTAAGTCAAAAGTCACAACAGCATAAGCATTGTGCCTGT 395 37 100.0 39 ..................................... AATATAGCGGCTTCGCCCGCGTCATCTGCTGCTACGCTC 319 37 100.0 39 ..................................... TTAAGAGTTGAAGTATCAATTTCTATTAACGCTTCTGGT 243 37 100.0 39 ..................................... GAAAGATAAGGTCGGAGAGCTAATTTGTGGCTTTCATCA 167 37 100.0 39 ..................................... CGATATTTTCACTGCAACAGCCACTTACGACTATTATGT 91 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TGAAGAAAAAGGAAAATGTGCAGATTGTGAGTATAAAAGAATATGTAAACCATTATAAGAAACATAGAGAGAAAACTAATAAAGGAAAAGAAAAACTGTATTTTTGAATGAGTATATAAAGAACTCAACAACTTTGTGTGATTCAAGAAAAAAGAAAATTAAAAAGCGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : TTCTTGTAAATTCCAATCGTTTTGATAAGTTCCTCCTTCAGTTACAACTAGTAT # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 343-11 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_258063_length_400_cov_1.695971- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 343 37 100.0 37 ..................................... ACTTAGGCTCCAGTTTTTTCCAGAATTCTTTCTTCAA 269 37 100.0 35 ..................................... TCTCCTGGTATTTCTTGCATTTTTTTTCACATCTT 197 37 100.0 38 ..................................... ATTATAATCCTCCAGTAATATGCTGATGCCAGCGTCAG 122 37 100.0 37 ..................................... ATCATCCTCATAATTAAACCCGCCGCTCCCTTTATAG 48 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CTTCAAAAAGAAGATTGAAACCATTATTTCCATTTTTTTTTCCTCTAATTAATATTT # Right flank : CTTAATTTGTT # Questionable array : NO Score: 7.71 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.91, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 308-38 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_26987_length_895_cov_4.761719- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 308 37 100.0 40 ..................................... ATACTAATTTGATAATCTACGTCAAATATCATTTTAAGAT 231 37 100.0 41 ..................................... ATTTCTATTGTAGATTCTAAATCTTTCATTCGTTATCAAGA 153 37 100.0 41 ..................................... CATTTACAGCAGATATCTTTAGAAACTAGACAATCAGCTAT 75 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 41 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : AAGAACAAAGAAAGTGTACTGATTGCGAGTACAAAAGAATATGCCAACCATTGTAAGAACTATGATTGCGAATAATTTTTAAATTAAAAAAACTTATGTGATCTTGAATGAGTTTATAAATGACTTGACAACTTTAAGTGATTCAAGGAAAGAGAAAATTAGAAGACTTAAAACAACCGTTTGCTGGAGAATATCGAACG # Right flank : TTTTCTCCATATTTTTTCATTCCATTGTTCTTCCGTTT # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.26, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 464-56 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_275882_length_487_cov_1.227778- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 464 37 100.0 37 ..................................... TCATTATCAATGAAAAACAGGTTTATCTGTATTGTAA 390 37 100.0 37 ..................................... AATTTCAGATTCACTAAAGTTCATTGATTTCCCTGCA 316 37 100.0 36 ..................................... ATCGAACTTTTTTCACCACAACAAAGGAGGTGCCAA 243 37 100.0 40 ..................................... TTATTGGATGATAAAATACTTTGTACATTTTCTTTTCTAT 166 37 100.0 36 ..................................... ATCTATGATTTTAACAGGAATCTCCATGATATTCTT 93 37 97.3 0 .......................C............. | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.5 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CTCTATAGGGACTTCAATTATGT # Right flank : CAATTCTTCTAATTCTTTAATTATTTCAAAATACTGATTTAGTTGCAATAAATTAT # Questionable array : NO Score: 7.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 364-20 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_376257_length_460_cov_1.480480- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 364 38 97.4 41 ....................................A. GATTTGATGATCAATTTCCTCAAAAGATTCTATATTTGTAG 285 38 100.0 37 ...................................... GCAAGAGATATTTCACATACACATAGAAATACTAAAG 210 38 100.0 38 ...................................... TATAATGCTCCCTTGGCCATCGCATAAAAGTAGCGTTG 134 38 97.4 38 .....................................C TGCTTCAAACAATAACGTTACAGAATGCGTTCCGACAG 58 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================= ================== 5 38 99.0 39 TTACAACTAGTATCTCAATGTAGTGAGAATTGAAATTA # Left flank : TGAATGAGTTTATAAATAACTTAACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACCTAAAACAACCGTTTGCTGGAGAATATCGAAGG # Right flank : AGCAAGAGATATTTCACATA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.29, 7:0.62, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACAACTAGTATCTCAATGTAGTGAGAATTGAAATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 1780-434 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_37832_length_1798_cov_3.405745- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1780 37 100.0 41 ..................................... TTACCCTTACTCAAAACCCTATTAAGAAAGGTTAAATCAAA 1702 37 100.0 42 ..................................... ATCGAAAATGAAACTCGAACCATAGAATCTCGTGGTAACGAA 1623 37 100.0 40 ..................................... ATGAAATACAAAGGATATGGAATTCCAGATCCAATTAAAT 1546 37 100.0 42 ..................................... AAGGTATTAGAAAAAGTGAGAGATATGAATTTATACACCACA 1467 37 100.0 39 ..................................... TACTGTATCACCGGCTTTAAGGTTGTTATCTTTGTAGTA 1391 37 100.0 40 ..................................... AAAAGATTGCTCCAGAGGCTGGTTTTCATTTCTATGCAAG 1314 37 100.0 40 ..................................... GAAGTTACTAATAGATTCTCCTGTTTCAATTTCTACTCCT 1237 37 100.0 39 ..................................... AAAAATTAAAGGTGGGAGACATCTCCCCAGTAAGTAGAA 1161 37 100.0 39 ..................................... TACTTGTGGTTGGTCAGCAACATCAACTTTCAAACCATT 1085 37 100.0 42 ..................................... ACACTTAGACCATTACCACTACCAGAGAGAGAATTATTCGTG 1006 37 100.0 39 ..................................... TATTGTAACATCATAAGTACTAACACCAACATCTTCAAC 930 37 100.0 39 ..................................... ATACAAATGATATGTACGTATAGAGGAAAGGCTACACCA 854 37 100.0 39 ..................................... CAAAACCCGAAGGAGACTTATGAGATGGTAGAGTTCACT 778 37 100.0 41 ..................................... GGAGTAAATTTGTAACTCATAATAGTACTCGAACTAAACTG 700 37 100.0 39 ..................................... AGAGAATCAAGCATTGTTGAAGTAACAGCGAAAGTTCCA 624 37 100.0 39 ..................................... TGACAACAAGATTATGAGTAGGCATATTGTTTCTTATTC 548 37 100.0 40 ..................................... CTCAAACGGGTAAGACAACTACCACTCTCCGCCTTCTAAG 471 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GGAACAGAAGGAGATTGA # Right flank : AAACTTTCCAGAAACCTTTCCTTGAGATTTACATATTTTTTTGAATAAACGTTAAATATATCTAGATTTGTTTATTTAATAATGTTTGATGAAAATGATGATGAAAATCCAGAAGTAACTATTCATGCTTCTGAAGAAGGAAAAAAAGCTTACAGAGAATTTCTGAAAGTTGATACTCATATTAAGAAGTTAAAAGATAT # Questionable array : NO Score: 7.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 533-35 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_43397_length_563_cov_0.853211- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 533 30 100.0 37 .............................. GAGCTAGAAAAAGCGGGTTTGATTATTAGACAAAATA 466 30 100.0 37 .............................. AAGGTAACATTATCATCTATCATAGTATGTCCAGAAA 399 30 100.0 36 .............................. GTGCTTGATACAGGGGTGGTTATCTGATCCTCTGCT 333 30 100.0 37 .............................. GCAGAATCGACTCCTATCCCTTCTTCAGTGGATAAGG 266 30 100.0 37 .............................. GTAATTGGACCAGAGAGTACATCGTCATCGTCATCAG 199 30 100.0 37 .............................. ATAGTAATTGTTCTTGTGTGGACCAAGATTGGGGCTA 132 30 100.0 37 .............................. GATTGTTCAGCTTATCTTGAAATTCTAGAAACTGATA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : ACAATATTGTTATAATAGATGATGCTATAG # Right flank : TTAATTAAAGATAACAAGCGACCAAGCCCTCGAAG # Questionable array : NO Score: 10.94 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 394-53 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_53374_length_409_cov_2.804965- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 394 37 100.0 40 ..................................... TAGAAATCTTTACGTTTGAAATTGTGAAGTGATCAAAGTG 317 37 100.0 39 ..................................... CAGGTGTAAAAAGAATTAATTAGCGTTATGGAACGGAAC 241 37 100.0 39 ..................................... CTTAGACAAAGAAGTCGTGATCACTCAGACAGGGAAAGG 165 37 100.0 38 ..................................... TCCGAATACGTCGGTTGTGTGAAAGCTATGCACTGGAC 90 37 97.3 0 ..........A.......................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 39 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : ACTTATATTTTTCTA # Right flank : TACAGTTTTCTCAGTCTCCAAAAAAGGATATGTTTATTATATGTCACAACTAG # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.43, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 184-480 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_82731_length_502_cov_0.858667- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 184 30 100.0 37 .............................. ACAACTAGGAGGAAAACCTAATGCCTTATAGAGACTA 251 30 100.0 36 .............................. GAGGAAGAACTAGCTCTCAGAAAAGCATTGGGGATT 317 30 100.0 37 .............................. TAGAGTGAGAACTAATAAAGTTAAAGGCATCATCATC 384 30 100.0 36 .............................. GAAGCAGAAGCATTAAGAAAGTGGAAGTCTTTTTAT 450 30 96.7 0 ......................T....... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : GGGGATAGAAAAAGGGGATATAGAAGTCATAATATGAGCGTATAGAAATGTAAATCGTCGATCTTTATAAATGAAATACAAAAAGAAACATTGACGAAATTATGAAAAAATAAAAAAAAAGAAAAATGTTTTTAAATTGTAGAAACAACAAAATAATAGACAAAAACGCATGAAAATCGCCGGG # Right flank : TGTCTATTACAGTATCATACCC # Questionable array : NO Score: 10.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1812-2069 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_89366_length_2611_cov_2.302738- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1812 37 97.3 36 ......................C.............. TCTACATTTTCACCATTTTAGCTGAAGTTTTAAACC 1885 37 100.0 35 ..................................... ACCTGTTTTTCGGTTATTTGGTTTCCTTGTCCAAA 1957 37 100.0 38 ..................................... GCAGTTTTTCGGGACACTGGTTTTTGATGCTCTACATC 2032 37 94.6 0 ........A..T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.0 37 GTTGCAATGAACATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AATTAACTCATAAAAACATCCACCAAAACTTACCGTGATTTCAAAAATTAGCCGCCAAAGGTAAAATTCAAGCCGCCAAAAAAAGAGAATTTAGATAAAGGAATCAATTTCATAAGAGAGAAGGGGTTCCCTATTTTTCCTTGTAATTAGAGTAAAGATTAAATACTCGATAATTCTTATTATATTATATAATAATAAGA # Right flank : AAACTACTTTTTTCATTTTTTATCACAAATTTAATTTTTTAATAACGATTCTCACATCTGGTTGTGACACTTCAGCAAAGCGAAGCAAGTGCACAGCTTTACCGAAGGCTACATATTTAGGTGCGCACTTAACGTAGCGGCGCGAATTGCGCGCAACCTGGTGATGTATGATAGACTTGTTAATAATATATACGATTTTT # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:1.08, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 498-6 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_93598_length_1556_cov_4.508747- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 498 36 100.0 40 .................................... GTAAGTCAAAAGTCACAACAGCATAAGCATTGTGCCTGTG 421 36 100.0 39 .................................... AAACTAAAGGTCTTTTTACTTCTTTAAAAGATATTTGCG 345 36 100.0 39 .................................... TAGTGTTGTTGCTGAAACCCTGTATTTATCTTCTGCAAG 269 36 100.0 40 .................................... AAGAATAAACGGTAATGTTCAATAGAGTGTTTGTTTCATG 192 36 97.2 37 ....................C............... GATTAGTTCCCCCTCCAGCATCGTATAATCTTAATTG 118 36 100.0 39 .................................... AGAGACAATCTATTTCGCTTTCATAATCAAAATGTATTG 42 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 99.6 39 GTTACAACTAGTATCTCAATATGTGAGAATTGAAAT # Left flank : GAACAAAGAAGATGTACTCATTGCGATTACAAAAGAAAATGTAAATCATTGTTAGAACGATGATAGAGAATAACTTACAAAATTAACAAATCTTATATAATATTGAATGAGTTTATAAATGACTTAACAACTTTGAGTGATTCAAGAAAAGAGAAAATTAGAAGACGTAAAACAACAGTTTGCTGGAGAAAATCGAACAG # Right flank : TAATAA # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATATGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 3351-2319 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_94848_length_3363_cov_4.122064- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3351 37 100.0 38 ..................................... TAGCAAGAGATATTTCACATACACATAGAAATACTAAA 3276 37 100.0 39 ..................................... TGTCGGTATGATTCGGTAGATCGCTTTGCGTTTTCTACC 3200 37 100.0 42 ..................................... TCAAAGAGCAGGCTGAAAATATGATGAAGTACTCCGGAAATG 3121 37 100.0 40 ..................................... TAACGTAAGATACAATAACAGAGCTCGCAGTGAAAACCTT 3044 37 100.0 39 ..................................... TTTTTTAGGGGAATATAGATTAGTATGAAAAGTTATTGT 2968 37 100.0 39 ..................................... TTTTACATTTAATAATTATTGAAGGAATAGTTTCCCATT 2892 37 100.0 38 ..................................... TAAGAAATATAATCGGTATTAGTTTCAATCTTATAATA 2817 37 100.0 40 ..................................... TCTTTTAGTATAGGGTTCTTTAATAGATGCTTTTTTAGTC 2740 37 100.0 41 ..................................... AACAAGAGCCATATCGAATAATCTTTTTTTATATTCATAAT 2662 37 100.0 38 ..................................... TCTGGTTATATTTTCAGTGGTGTTTTTGATGAAATAGT 2587 37 100.0 39 ..................................... CTAAAGACGCTACAACTTGGACAAAAGTTGATACTTTAA 2511 37 100.0 40 ..................................... CATCAAATTCATTAGTAGTGTGCATAAACCATGTAAAAAC 2434 37 100.0 41 ..................................... TCAGGAGCTACTTCAACTGTGTAATTTTCCCAGGATGGTAA 2356 37 91.9 0 .......T...........CA................ | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 99.4 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TTCTATATTTGT # Right flank : ACCTGTTCCTGAAATAGTAAATGGAACACCATCTCCGCATTACAATTAGTATCTATTCGTTTAGGAAAAACTTTTTACCCTTAAAATGATAAACACTATGATGATAAAATACTTGCGTGTAAAGAATTTTAAATCAATAGAGAATTTAGAGATTGAACCAACTAAATTCAATATATTGATTGGTTCTCCTAATGTAGGAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 3326-3514 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_96745_length_3842_cov_5.784118- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3326 37 100.0 40 ..................................... TTAACTGGCATCTGGTCGATAAGTACCATATACTCTGCTC 3403 37 100.0 37 ..................................... CTTGAGTTGTCGCCCCTGTTCCGTCCGAGATATGTAA 3477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 39 GTTGCATTTGATGAATCATTGTAAGAAGAGATGAAAC # Left flank : TAGTTCGTTTTTACTGTTAAGCAGGTTCTTTAGAAGACTGCTAATAACAAATCTCTGGAAAGATTAGCTTTTTGACCTAAGTGAGCAAATTGCTCACGCAGGTATAATTGTAAAGATAAAGAGAGTAACTTTTGATATGGTTCTTAAGGGCGATTACATTTTATTTTTTAACCTGCGCGGACAATTTGTCTATGCAGGTA # Right flank : AGTAAAAGTATTTGTCAGAAGACTTGTCAGAAGACTTGTCAGATTTTCTTCTGTTGCATCTGACGAATCTCTTTAGAGGTGTTTGGCAAAAAGGCTTGAAGTCTCTGTTATATTCTAGAATAAATTTTGCTGTGACATATAGTATACAGCTAGTAAGAATAATTCAGTAGCGTGAGATTATCAAACTCTTTTTTTCTAAA # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:1.00, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTTGATGAATCATTGTAAGAAGAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 230-574 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_122765_length_759_cov_1.015823- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 230 37 100.0 39 ..................................... CTTCTTTATCTCGTAAGGGTAAAATAGGATATTCTATAT 306 37 100.0 40 ..................................... CTGTAATTACTCGCGTCTATAATCAAGTTGTTTGGTAAAT 383 37 100.0 41 ..................................... ATTTGAGAGCTTCAATAGAAGATTGTTCTTCTTTGTAAAGA 461 37 100.0 39 ..................................... TATTGTTTGTGAAGATAAGCCAAAGATTCCTTCTCCTTC 537 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GAAGAACAAAGAAAATGTACTGATTGTGAATACAAAAGAATATGCCAACCATTGTAATAACATAATTGAGAAGAATTTTTAAATGAATAAAACATATATAAACTTGAATGAGTTTATAAATGACTTGACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACGTAAAACAACTGTTTGCTGGAGAAAATCGCTCG # Right flank : ATGTTTTAAAAATTAATGACATTACATACATTAAATCAATACGGACACGACTTTCAAATAAAGTGTATTTCATCTTTATTATCTCACAAGGAATTCTTAGTTAACATCCATGATATTATTTCGGATAAATACTTTGAAAACCCCGCACATAAATGGGCTATAAAAGAGATATTAAATTATTATGA # Questionable array : NO Score: 7.12 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.32, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 239-429 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_148249_length_433_cov_1.620915- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 239 37 100.0 39 ..................................... TCAAGAATAGGGCTCATCTCTTCTTTACATTCGGGGCAA 315 37 100.0 40 ..................................... GCGATGCGCTTATAGCGGGCATGGGTACCTGCATAGGATA 392 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AGAAGAAAAAGGAAAATGTACAGACTGTGAGTATAAAAGAATATGTCAACCATTATAAGAAACATAGAGAGAAAACTAATAAAGGAAAAGAAAAACTGTATTTTTGAACGAGTATATAAAGAACTCAACAACTTTGAGTGATTCAAGAAAAGAGAAAATTAGAAGGCGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : ATGT # Questionable array : NO Score: 6.92 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.52, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 479-60 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_263308_length_519_cov_2.076531- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 479 38 100.0 38 ...................................... TTTCCAACGATAGCTGTTTTTATTAAGTGGTTTTTTAC 403 38 97.4 38 C..................................... CAGTCTTGACTCTATATATACCCTTTTGGTCTCTAACC 327 38 100.0 38 ...................................... CATATATAGTTGCTTTTGTTTGTGAGTGTGATCGTTCC 251 38 100.0 39 ...................................... ACTGCACAGTTTCTCATCGATACCAGTCGTTTTGTACCG 174 38 100.0 38 ...................................... GATAAGTCACACTGAATTTATAAGCTGGTATATACAGT 98 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 99.6 38 TGTTACAACTAGTATCTCAACATAGTGAGAATTGAAAT # Left flank : AAATTCATTTGAGGTCGGAGTGATCTCTTTACTTAACCCG # Right flank : TGTATCATTATGAAGATAATAGCAACTATATATGATTTCAATTCTCACTATGTTGAGATA # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.29, 7:0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTACAACTAGTATCTCAACATAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 402-55 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_265157_length_443_cov_1.443038- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 402 38 100.0 39 ...................................... CTTGTTCACTTGTACCGATAAATCTCGCTATAAAAGGCA 325 38 100.0 40 ...................................... ATCGCTTGTAAAATTACCGCTATGGCGCGGTTAGAATATC 247 38 100.0 40 ...................................... TCTTTCTTGGCTTTAGTAACTTCTTTCAAAGAAGTGTTAT 169 38 100.0 38 ...................................... CCGTTTCCCCGGCTATCACCGCGGTGGGGACGTACACA 93 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 100.0 40 AGTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GGCCACGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTG # Right flank : TCTTGTTCACTTGTACCGATAAATCTCGCTATAAAAGGCAAGTTACAACTAGTAT # Questionable array : NO Score: 6.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.29, 7:0.40, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 626-49 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_286241_length_634_cov_2.455621- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 626 37 100.0 43 ..................................... GAATACTTGTGAAAGATTATAATCCACAATTCTATCAGCACTT 546 37 100.0 40 ..................................... ATCTAACAAGTACTAATGGTTTCTTTGAATTAGAATACAA 469 37 100.0 39 ..................................... ATACTTCTATGCCTTTCAAAGTATGCGACTCTACCTATA 393 37 100.0 38 ..................................... TGAAAAAGATAGGTCCTATTTGTCTCGTGGAATCTTAT 318 37 100.0 39 ..................................... AATGGTCGGCGACTACCAAGAAACCGGAACTCTTGAACC 242 37 100.0 41 ..................................... TGAGTTTGAGCATATCTACAGTAGATAAACTCATGTCGTAA 164 37 100.0 41 ..................................... GTCTCTAAAGAAATGGTTTGAGCTCCAACACTTTCTTGACA 86 37 97.3 0 ............................T........ | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 99.7 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AGCAACAG # Right flank : TTCTCACTACATTGAGTTACTAGTTGTAACGGTTCAAGAGAGATCGGAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 66-489 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_39408_length_536_cov_3.000000- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 66 37 100.0 40 ..................................... CTACCAACAGATAACGTGACCATTTATGCTATGGTTGGTG 143 37 100.0 42 ..................................... ATAATAAGAGATCTTGGTGTAACCTTTGTAGTTTGCAAAGGA 222 37 100.0 39 ..................................... ACTTGAGAATTGAGTGAAACTGTAGCCATGAATACTATA 298 37 100.0 40 ..................................... CTAAGTTCGATGAAACCTGGCATCAAGAAAGAACTACTCA 375 37 100.0 40 ..................................... GCTAAAATAATCCAACCATAATGCGATAGAAGTTTTAGAT 452 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGAAGAAG # Right flank : AGGTAGAAGCAATACTTAACGAATTGTTTGATGAATTGTGTTACAAC # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 264-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_41117_length_533_cov_3.500000- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 264 36 100.0 39 .................................... TTCCCAATCTTGATATTGGATAGGACTTGCTACATTAAA 189 36 100.0 40 .................................... TTTTATATTTTCTTTGATTGTTCTTGTCATTTTTCATACA 113 36 100.0 40 .................................... TCTTTTTATATCCAATTTATAGGCTTTATTAAAAGTTCCT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 40 GTTACAACTAGTATCTCAACATAGTGAGAATTGAAA # Left flank : GAGAACAAAGAAAATGTACTGATTGCGATTACAAAAGAATATGCTAACCATTGTAAGAACGATGATTGCGAATAAATTATAAATGAACAAATCTTATATAATATTGAATGAGTTTATAAATAACTTAACAACTTTGAGTGATTCAAGGAAAGAAAAAATTAGAAGACGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : A # Questionable array : NO Score: 6.97 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.37, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAACATAGTGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1779-82 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_4426_length_4926_cov_4.789748- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1779 30 100.0 37 .............................. GGAGTCGACGCAGCTTGATAATTGACTTTAAGATATT 1712 30 100.0 37 .............................. ACTCTAAGACTGTATCGGAAATACGTGTAAGTTTAGG 1645 30 100.0 37 .............................. ATGGTACACATTTACTAGATATTCAACCTTACAAAAA 1578 30 100.0 36 .............................. AAAGATAAAGAATAACCAGCAAGAAAACCAAGAATT 1512 30 100.0 36 .............................. ACAATTACGAATACTCTTTGGAACAGTTAGATAAGA 1446 30 100.0 37 .............................. CATATTTAGAATAGTTTCTTTCTTTCTTCAATTTATC 1379 30 100.0 36 .............................. TTGGCAATTTGTCCGGTTCATGCCACAATTAAATTT 1313 30 100.0 36 .............................. TCGTAAACAAGAAGAGGGCTATGATAAGGACCTTCT 1247 30 100.0 37 .............................. TTGTCACCAAGAATAGCACAAGTTAAAGTTTTAGGAG 1180 30 100.0 37 .............................. TATGTTTGTATTGGTGATAATCCACAACATATAGGTA 1113 30 100.0 36 .............................. AGACTTGGTAACTTAGCTTCTAATCCTGCCCAACTA 1047 30 100.0 37 .............................. ACGTTAGTTTTTGATCAGCAGAATCACAACGAATTGT 980 30 100.0 37 .............................. TTAATATAAACAGCTGCTGTAATAAAATCTAAACCTA 913 30 96.7 36 .................C............ TTGCTTAAACCTTCTTATTTCCATGTCTAAATGGTC 847 30 96.7 37 .................C............ TAGGTCTATAAAATCAATATCTATTGCGGGAAAAATA 780 30 100.0 37 .............................. GACATTTATATCGTTTATAGAAACGATTCAGACGTGC 713 30 100.0 36 .............................. ACGTAAAGATGCTCTCAGCAGAGATGCTCAAAATTT 647 30 100.0 37 .............................. TTATGGTCATAAGATAGTTTCTGCTTAACCTTTAATT 580 30 100.0 37 .............................. GCATTTGACACCTTCCGCTTTAATTTGTTTAATACTC 513 30 100.0 38 .............................. AATAATAGAGAGGATCAGCTATTTCATCAACTTTGATT 445 30 100.0 36 .............................. CTGATTTTCTTTAAAGTAACGAATAGCAGAACCACC 379 30 100.0 37 .............................. ATGAAGCTATTACTTTACTTTTCCAAGATCGTAAAAA 312 30 100.0 37 .............................. CCTAATTTATTGCCCAACCAAGCAAAAATCCAAATAG 245 30 100.0 36 .............................. GTGTTTGAAGAGGCTGATAAAGCATTTCGGTTGCAT 179 30 96.7 37 .................C............ TTGACAATGAATTGGTATTGGTCTATTACAGGTTCGG 112 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.5 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : ATTGAAAGAGAATTGATGGGGATAGAAAAAGGGGATATAGATGTCATAATATGAGCGTATAGAAATGTAAATCGTCGATCTTTATAAATGAAATACAAAAAGAAACATTGACAAAATTATGAAAAAATAAAAAAAAAGAAAAACGTTTTTTAATTGTAGAAACAAGAAAATAATAGACAAAAACACATGAAAATCGCCGG # Right flank : TCCTAATTTATTGCCCAACCAAGCAAAAATCCCATAATGGTCTGATTTATACCTATTTGAGATCGGAAGAGCACACGTCTGA # Questionable array : NO Score: 10.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 310-45 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_62631_length_441_cov_1.331210- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 310 37 100.0 40 ..................................... GCAGGTTGAAAGGAGAATGCAGAGTGAGTATGTCGCTGAA 233 37 100.0 38 ..................................... GATCTAGATAAGTTTCGCTTGGAGCACTGGATTTGATA 158 37 100.0 39 ..................................... CTTAGCAATAAAGCTTTTGAAGAATTAGCTAGTAAAATA 82 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 39 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : CGAATAATTTTTAAATTAAAAAAACCTATATAATCTTGAATGAGTTTATAAATGACTTGACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACGTAAAACAACCGTTTGCTGGAGAAAATCGAAC # Right flank : TTCCAGAACGAACTTTGAATGAGTAAACCTCACTTTCATAGGTTA # Questionable array : NO Score: 7.09 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2111-1489 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_69801_length_2130_cov_4.610085- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2111 30 86.7 37 .A.G..C.A..................... CCTAATTTATTGCCCAACCAAGCAAAAATCCAAATAG 2044 30 96.7 37 .................A............ TTGGGTAGACGGTCATTAAGGAGCTTACTGAGAATTT 1977 30 96.7 35 .................A............ TTGACAGACTCTTAACTTTTGAAGATGAACTGAAA 1912 30 96.7 34 .................A............ GGAGTCTTAGTTTACAATGAGGACAAAAAGTAGG 1848 30 100.0 36 .............................. GATTATTCCTCAAGATACTGAGGTAATTAAAGATTA 1782 30 100.0 34 .............................. TTTTTCTCGTTTGTGGTTTGGAATTCTTAGCACC 1718 30 100.0 37 .............................. TACTAAAATAAGCATGAATAAAACCATCATCAATATT 1651 30 100.0 36 .............................. AATGATCATTAGTCTATTTCTTGTTTCTACAAGTGT 1585 30 100.0 36 .............................. ATATAATTATCCACATCTATGTTCTCATAACTGAAC 1519 30 86.7 0 A.....C........C...........T.. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.3 36 GTATAAATCAGACCATTCTGGGATTGAAAT # Left flank : TTGCTCTATTACAGGTTCG # Right flank : CATACTCACATTGATAATAAAGGACATGTCCTAATTACTTAATCTCTCTGAAAATGTAACTTCATAACTACAAATAAGTGTGAATCTGTAATATCTTGGAAATTACTATTTCTAAAATTATATCTCTTCCAGATATGTTTCTTTTTCTGCTTTATCAAAATGTTCATCCAATAAAACAATGGTTTTTTTTAGGACTTCTT # Questionable array : NO Score: 10.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.99, 7:0.87, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTCTGGGATTGAAAT # Alternate repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 672-862 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_72719_length_897_cov_3.619481- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 672 38 100.0 38 ...................................... TTACCAACAGATGGTAATGAAAAAACAATTGTTGAAGT 748 38 100.0 37 ...................................... AAAGATTTATTTGAATTGGTTACAAATTCAATGCCTT 823 38 94.7 0 ............................T..T...... | A [824] ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 98.2 38 TGTTGCATTTACTAGCTTACTGATTCATCAAATGTAAC # Left flank : CTCTTCCCCTGCCAATAATTACCCAACAATAAAAAACTCTCGTCTCAAGTCTCTTTCCCTCGAAGAAAAAATCACTGAAATTACTTAACCAATAATAGAAAAAAGATGGGGGGTTAAGACGTAAAGTAACAAAGGTTTAAAAGCTGAACGACAGCAAACGACAGCACAGGGTTGCATTTAATGCAATTTTAGTATATTCC # Right flank : GAATTAAAGATCAGAAGAGCCTCATGTCGGGAAAG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.29, 7:1.24, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCATTTACTAGCTTACTGATTCATCAAATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 57-420 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_101857_length_1566_cov_10.325226- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 57 29 100.0 37 ............................. TTGTAGAGTTCTCTCCGTGAATAATAATCTTCTTGCC 123 29 100.0 38 ............................. GCAGCAGATAGATACCAAGTTAAACCTCGTATGAACAC 190 29 100.0 39 ............................. TCAAGGAAAATTGCAACCACTAACAAAGTGTGAGATGGC 258 29 93.1 37 ...C..........T.............. TCAGGGAAATAGGCGTTGATTAGCGAGAAGAAGAAGC 324 28 89.7 39 ...T.T..................-.... TCGTCATTACCACAGACAATCTCCACTTCTCTTGCCTCC G [351] 392 28 86.2 0 A..C...............G.....-... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 94.8 38 TTTGTAATTAACTAGAAATAGATTGAAAC # Left flank : CAAGAAATAGATTGAAACTTAAGGACGAGACTTCATTGTCTACAAGCTCTTTGACAT # Right flank : AGATTAAAACTTCAGAGAAATTCAAAGCTTTACATTTCTAATACTTAAATTTTTTAATTTTTCACTAAAAACATCTTAATTTAAAGTGTTGGGATTTCTTACTGAATCTATTTTCATTGGAATAAAAAAAGGGGGGATAAAGTGTTAGAGGTGCAAAAACTTAATCTTCTTCTCTTCTGTCTTAAGGAATTTTTGTAAAA # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:1, 7:0.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAATTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 551-65 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_105009_length_563_cov_2.428899- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 551 36 94.4 35 ....................C..............G ATTTTATATGGTACCCAAGTCTGTGGACACAATGC 479 36 97.2 39 ....................C............... GAGAATATTTTCATTATCTTATCCATCGCAAGTATCGAA 403 36 100.0 38 .................................... GTTAGTCCACTGCCAATTGAATATCCTTGAGACTATCA 328 36 100.0 41 .................................... TCATAATATTCCTTTTTTACATCAAGAATAATAACTAAATT 250 36 100.0 39 .................................... CTTAACCAATCAATCGGAATTTCTTTTAGGTGTATTTGC 174 36 100.0 36 .................................... GAATTATATCGGGATTATCATCTTCCAGAAAGTTAA 102 36 94.4 0 ...........A........T............... | G [89] ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 98.0 38 GTAGCACAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CCGATCTATTAT # Right flank : TTATAATAATTTTCTCAAATAAATTCATAAATTCAACAGTCGCACAAAAAGTAGCTTCATAAAGA # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 15-273 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_105351_length_304_cov_4.576271- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 40 .................................... CCATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAAT 91 36 100.0 37 .................................... CAAAAAATTAGATGATATAAAAAGTGGGGATTATCCA 164 36 100.0 37 .................................... CAGAATAAAGTATCTCCCAAGGTATAATTAGCATATG 237 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Left flank : ATATTTTCATTACTG # Right flank : AGTTCAAATACTTCTCGAAACTTAGATAATT # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.89, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 363-24 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_133592_length_407_cov_1.771429- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 363 37 100.0 37 ..................................... TTTTAGTTTAGCTCCTAAATATTCTTAGGAAATAGAA 289 37 100.0 36 ..................................... GTTATATCTACGATTTGTTTCCCGTTAAACCTAATC 216 37 100.0 42 ..................................... TCCAACGCTTTCATGCCTTTTATATCCATCTCATTAGAAATA 137 37 100.0 39 ..................................... TATTTAAATGTTTACTTCGGAATTTTTGCCTTAAATGAT 61 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 39 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TAATAAAGGGGTATCGTCTAGTGGCCAAGGACTTCGGGCCTTGA # Right flank : TATATACACATTTAGTCCAAGGCA # Questionable array : NO Score: 7.53 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.73, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 55-390 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_184493_length_461_cov_2.227545- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 55 38 97.4 37 T..................................... TCACCAATAGTATAACCAGTGGTTTCCTCCAAATGTA 130 38 100.0 38 ...................................... CTAACCAAAAAAAGAAAAGGTGAGAATGTAGATATTTT 206 38 100.0 36 ...................................... TTAAGTTGGGAATGGACATCTATTAACCCATCTGCC 280 38 100.0 34 ...................................... ACTGGTACATATTCCCATCCCTCAATTGTAATAT 352 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 99.5 36 AGTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TACTAGAGAATTGAAATCTGTAAGAATTGTCATAGAGGTAGATAGACAAAATCTT # Right flank : ATAGATCCCATTGGAACATCAAAATATCCTCCAGCCTTGTTGCATAAAGGATCTCAACTACTAGAGAATTG # Questionable array : NO Score: 6.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:0.90, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 411-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_191644_length_423_cov_2.206081- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 411 38 100.0 38 ...................................... CATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAA 335 38 100.0 36 ...................................... CCAAATGTTTTTTAAACTTCTCTAATTCGGATATAA 261 38 100.0 35 ...................................... AGACCACGACATCTCGGACAACGAATTTTCTTTTT 188 38 97.4 35 A..................................... GGTAATCCGCATGCACCCGAGAATATTTTCATTAC 115 38 100.0 38 ...................................... CATTTAGGACATTTGAGATAAGTTCCACCCTCAGTAAA 39 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 99.6 37 TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAAC # Left flank : ATATTTTCATTA # Right flank : C # Questionable array : NO Score: 6.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.29, 7:0.83, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 520-36 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_249346_length_554_cov_3.079625- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 520 37 100.0 37 ..................................... GACCATTCTCCATCATCATCCTTAACTCTAAAATAGA 446 36 94.6 37 ......-..............T............... TTAATCGAAGCTTCAATATATTTATCCATAACTATTA C [438] 372 37 100.0 38 ..................................... TTCACTAAATTTTCAAATAATGTTTTAAACTGCAAATA 297 37 97.3 39 ........T............................ TCTGCTATAAGAAGCCCTGCGGGATCAAAATCCCCATAA 221 37 100.0 36 ..................................... ATTTTTTGAATTGAAAAAATAAAATTATCTTTACAG 148 37 97.3 38 ...A................................. ATGACTAAAGTACTCCAAGTGGTATCCATGTCATATTC 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.5 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CCATCTTTCATTATTGCATAGCATTCAATAACTT # Right flank : TTTTATTGCCGTATCTAATACTGTAAAAATAAGTTC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 75-338 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_251801_length_405_cov_1.262590- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 75 37 100.0 37 ..................................... TTAATTGAATTATGGGGTATACATATAACCACTCATA 149 37 100.0 38 ..................................... TAACTATTCCTGAAAATCCTAAAATCATTACGGTTAGC 224 37 100.0 39 ..................................... TTATCTTTATTTGGAGCAATATTTTTTGGAACGCATTTA 300 37 91.9 0 ............................A...TC... | T [327] ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.0 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : TTCCAAAAAATATTGCTCCAAATAAAGAAGATTGAAATTTAAATATCTGGTAATATTCTTTATATCTATACCTGG # Right flank : TTCTTTATGAAGCTATTGTTTGTGCTACGCTAACCGTACTGAATTTAGGCTTTTATGGATTAGATAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 630-76 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_27920_length_672_cov_2.875229- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 630 37 78.9 35 TCTT.-.G.T.T.......................... GGAATAGAACAGTGGGAAGAGGAAGGAGACTTAGC G [593] 557 38 100.0 36 ...................................... TTCCGACGGTAAGCATGTTAATTACTTGCGTATCTA 483 38 100.0 35 ...................................... TTTTTGATTAAAAATAAATGTAGCATAACAATTAC 410 38 100.0 35 ...................................... AAATAGAGGCACTTCGGGATATTTTTCTCTAATCT 337 38 100.0 37 ...................................... AGTCTACAAAAGGTTTCGGAATAGCATTTAAACCGTG 262 38 100.0 35 ...................................... GTAATTCCAGATATTGTAACACATATTAATCCAAT 189 38 97.4 37 .....................................G GAACTAAGTGATGAGGGTTGTGGTGTGCTTATAGCGA 114 38 97.4 0 A..................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 8 38 96.7 36 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAATT # Left flank : GGCATACGAGATTCCGAAACGTGACTGGAGTTCAGACGTGTG # Right flank : TAGGAATTAATATAAATATAAAGGAATTACAATTTCAATCTTCTTTATGAAGCTATTGAGATCGGAAGAGCACACG # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.29, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 638-381 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_58149_length_741_cov_5.967427- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 638 37 86.5 36 ......CA..C.A.A...................... AATAAGCAGCCTCGGTAATGGCAAGACCCTCACCAC 565 37 100.0 36 ..................................... TTTTAAACTGTAAAAGTTTCGTGAGGTTCACTTAGA 492 37 94.6 37 ....T.........A...................... CCAACGGTCTAGGTTGCGTCCCAAGATTCTCCATAAG 418 37 94.6 0 ...A..........A...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 93.9 37 GTAGCAACAAAATTGGCTTCATAAAGAAGATTGAAAG # Left flank : ACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTAGCTTCATAAAGAAGATTGAAATTTTTTACAATGATCTAAAATGTCTTTTTTAATTTCT # Right flank : GTAAAAGGAACATCATGATTAAAATATATTGAAAGTCAAAAAATGTCTCAGAATTCTTAATTAATACAATTATTTTCATTAAAAATTTAGGCAATATTGCAATAATTTTTAAAAATGTTGATGATTTAACTCAAAAATAATAAAATTTGATCTTTTTATTTACGATTGGGAAATTTGAAAATACTATAATTTTAAATATA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:-1.5, 6:1, 7:1.40, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTGGCTTCATAAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 45-607 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_69148_length_645_cov_1.729730- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 45 38 94.7 35 T.....................T............... TCTAATCAGATTAGATTGATAATATTTTTTCATTA 118 37 92.1 35 ....T........-........T............... ATTATGACAGCAATATAGTTCCTCTTTCGATTTAG C [129] 191 37 89.5 39 C...T........-........T............... TAACCTTCACCAATTCTTTCATAAGTTAATGTATCTTTA C [201] 268 38 92.1 36 ....T......C.A........................ ACCCAAGCATAATTTACATCCCTTAGATCGAGACTC 342 38 100.0 38 ...................................... TTACTTTATTGCATACACCATAAAAAGGACCTATTCTC 418 38 100.0 37 ...................................... ACAAATTCAGGTGTAGTGGTGCAATCGGTTGCTATAA 493 38 100.0 38 ...................................... TTACTTTATTGCATACACCATAAAAAGGACCTATTCTC 569 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 8 38 96.0 37 AGTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : CATTAACTTATGAAAGAATTGCAGTTGATCGGTATTCTACTAACT # Right flank : AGAAAGGTTGTATAGGATGTTTAAGGCAATAGACTTTG # Questionable array : NO Score: 6.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.29, 7:0.73, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 592-40 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_75296_length_733_cov_2.851485- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 592 36 100.0 37 .................................... CATTGTATTCGGGTTTTTCTGTGCTCATCGTAATTTC 519 36 100.0 39 .................................... CGGCATCTCTAGATACTTACTTGTATCATATTCGCCCCA 444 36 100.0 38 .................................... CATGGAATACCACATTCACATTTTGGAGGCAAGTTTAT 370 36 100.0 39 .................................... GTTTCTAAAGTATGCGCATGGGGTTTCAATTATATCTTT 295 36 97.2 36 .....................T.............. GAAATGAATCGCATCTTTATTATTCACTCTAATTAA 223 36 97.2 37 .....................T.............. GCTATATTTTTGAGAAAAATAGGCAAATTATAAATAA 150 36 100.0 38 .................................... CGTTGAAGACATATGATAAACATAAATCGTATAATCAT 76 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.0 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : GTTTTTTTTTTTTTTTTTTTTTTTCAAGCAGAAGACGGCATACGAGATTCCGAAACGTGACTGGAGTTCAGACGTGTGCTATTCCGATCTCAAAGAAGATTGAAACTCATAACCTTTATTCTCCAATGAAAAACAAACATT # Right flank : ACGTTGAAGACATATGATAAACATAAATCGTATAATCATG # Questionable array : NO Score: 7.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.68, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : GTAGCAACAAAATTAGCTTCATAAAGAAGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 2949-6699 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_88689_length_7921_cov_5.513985- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2949 29 96.6 31 ............................A GCATGTTTTGGATTTTGAACTTGCGTGTTTC 3009 29 100.0 32 ............................. ACATCGTTTGTCCCCGAAAATGTGAATTTATC 3070 29 100.0 32 ............................. CATTGAAGTTCCCCCGAGTTCAATTTGTGAAA 3131 29 100.0 32 ............................. GGAAATTTAATAGAGATTGAGAGAGTGAAATT 3192 29 100.0 32 ............................. GGTTATCCCCTCATTTTCTACGGATTTAATAG 3253 29 100.0 32 ............................. TTATCTGCAGTGATTTGTAATTGAGCAACAAC 3314 29 100.0 32 ............................. GTGGTAAAATTTCAATATTTCCAAGCGTTTTA 3375 29 100.0 32 ............................. AAATTATATAAAGAAGTGAGGTTTCCTTAATG 3436 29 100.0 32 ............................. TAAGTCAATGAGATTTGTGGATACGTCTGATT 3497 29 100.0 32 ............................. AAAATTTAATTATCATTCTATACCTCGATGGC 3558 29 100.0 32 ............................. ATAAGAAGTGATAAATTATAGCAGAAAGGAAG 3619 29 100.0 32 ............................. GATAGATCGGTAAATGTATATTCGTCCAAGAC 3680 29 100.0 32 ............................. GGACAAGTCTATTATGTTGGGGAAGCAACCGA 3741 29 100.0 32 ............................. TATTTATGTGGTTTTCATACAGATTCAGTAAT 3802 29 100.0 32 ............................. TTTAAATTTGAGTAAATTATTGGGTAAAACTT 3863 29 100.0 32 ............................. TTAATAGTGGATTTCCAAAATGGAAGTGAATA 3924 29 100.0 32 ............................. TCTATTATATCGTTATCTGTTATTAAAATCAA 3985 29 100.0 32 ............................. GTGGTGGCGATGATTTTATCTCAAGCGCCAAG 4046 29 100.0 32 ............................. CAGACGGAAATCCATTACATCACGATAAATAT 4107 29 100.0 32 ............................. ACTATATGGAGATAAGTCTATCGAAATATCAA 4168 29 100.0 32 ............................. ATAATATCAAAAAAGAGAAATTCATTCTTAAA 4229 29 100.0 32 ............................. AATTTTCATTGTTTTGTATCTCACGACTTAGA 4290 29 100.0 32 ............................. AAAAACAAACATTATTCAATTTCGATGATTTA 4351 29 100.0 32 ............................. TAGACTGAGGTCTCTATAATCACAATTACCAC 4412 29 100.0 32 ............................. GGAAATGATAAAATTAAAGAATATTTACTGAG 4473 29 100.0 32 ............................. ATATTTTAATTCGAGTAGCAGGAAATGATGCT 4534 29 100.0 32 ............................. TAGATTATAAGACATATTCAAAATTAATTCAC 4595 29 96.6 32 ............................T ACTATATAGGATTGTTAGAGGAACTCCTAGAC 4656 29 100.0 32 ............................. TGATTAGTCTCATACTGAATAGCGTTATTCAC 4717 29 100.0 32 ............................. GATATAGAAGAGGTTTATGCTTGTGTTTCTTT 4778 29 100.0 32 ............................. TTCTAGCGGCATTTAGGGATCAACCTCTTCAA 4839 29 100.0 32 ............................. ATATTAATTTAATTGGTTTTAAAATAGGTGTA 4900 29 100.0 32 ............................. ATATTTTAGAGCATTATTTAGGAATATATTTA 4961 29 100.0 32 ............................. TATCAAGAGATTCTACTGTAATATCATGAGAA 5022 29 100.0 32 ............................. AGATCAAGAAACATTTATAGAACAATGGATCG 5083 29 100.0 32 ............................. GAGTTTTATCTTTTTTATATCGGTATAATCAA 5144 29 100.0 32 ............................. GATGTTATTATTCTTCCGAACTTTAAAAAACA 5205 29 100.0 32 ............................. TTCTATACTTTTTTTATCGTATATTTTCTTTA 5266 29 100.0 32 ............................. GATTTACAGAGATTCTTTAACATTGCAGATAC 5327 29 100.0 32 ............................. CAGCAATTGAAATGATGCTTACTCCAATACCT 5388 29 100.0 32 ............................. AATTCAATAAAACTTGGAGTGATTCTTAAAAT 5449 29 100.0 32 ............................. TTATGCTTTAGATTATTTACGTCGATTAGATT 5510 29 100.0 32 ............................. GAAACGTAAGGCAAAAGAGCCTAAGGATAAGG 5571 29 100.0 32 ............................. CATCCATTTCTATAATTCCAGGATATTTCCAA 5632 29 100.0 32 ............................. GACTTAATTGCGTCCCATGATTCTTTTGGAAC 5693 29 96.6 32 ............................A TACAAGAAATATTTAAACCTGGTCTTGCATAC 5754 29 100.0 32 ............................. GATGATGTAATTTTTGTTTCAGTTAGGGTGAT 5815 29 100.0 32 ............................. GAAGGAGTTGCCCAGTGGTGTAGGGCATTTGC 5876 29 100.0 32 ............................. AATAAAGTCTTCTGAATAAAAGAAACCAAAAT 5937 29 100.0 33 ............................. TAAAGGATTAATTAATCGACATTATCAATCAAA 5999 29 100.0 32 ............................. AGGAACCCTTTAGTTTTTTATCTTTTAAGTAC 6060 29 100.0 32 ............................. AATCATATTCTGAAATGGACTTGATAGTCAAA 6121 29 100.0 32 ............................. CATCTATATTTGGATTTCGACCATGTTATTTA 6182 29 100.0 32 ............................. ACTTTACATATTTACATGGTCCAATTGTAAGA 6243 29 100.0 32 ............................. TTTTATTCTATAAGGAAATAACTAAAGAGCAA 6304 29 100.0 32 ............................. TATCCACAAAAGCCTCCTGCATTAAATAATTC 6365 29 100.0 32 ............................. ATGTAATTTCTTTATTTACCAGACCATGTCGA 6426 29 100.0 32 ............................. AATTTGTTTTTAAAATAAAAAAGAGGTCAAAA 6487 29 100.0 32 ............................. ATTAAAACCGAGTTTTGTTTCTTTATCACATT 6548 29 100.0 32 ............................. GAACTAAAGGTAGAATATTGCGACATTTAGAA 6609 29 100.0 32 ............................. AAATATATTAGTGATAAACGACGTTTTACAGA 6670 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.8 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : TCTAACTCCCTTGTTTATGTATTTGCTACTTAATTCTAAGAAATTAGACTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGG # Right flank : ATAAATTGAGCAAGATTACTTTTACCAGAACCATTTTAAAATGATCTCTTTGAAGAAGCAACATAAAGCAAACCGAAAAATAGGAGAAGAATTAAAAATAAGTAAGGAGTCGGTCGGTTATTGCCTCAAAAAGTTCATGCTCGATTATAATAAATACAAGCATCCAGGTATAGCCCTACAAGAAATTAATGAAATGATAG # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:1, 7:1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428-13 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_458108_length_468_cov_1.313783- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 428 38 94.7 37 .....G................T............... TCCAGGCATATGTGCCCTGTGCCCGGGCATGAATATG 353 38 94.7 37 .....G................T............... TGAATAACCTTCTTGGAAGAACCAACCTGGACGGCAA 278 38 97.4 39 ............T......................... TTTCAACGGCCTCATTGGCAAAGCCCGCATCTACAACAG 201 38 100.0 36 ...................................... ATGACCATGTGGATAATTTGCTTGGCATTCCTTTTG 127 38 100.0 38 ...................................... TCAGGTATTTTTGTCAGATTAGGAATAGAACCGACATG 51 38 97.4 0 ...........A.......................... | ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 97.4 38 GTTTAATTCCCTCATTCCATTAAAACAAGGATTGAAAC # Left flank : TGAAACTTATTTTGTCTAATCCGGTCCGTGCTTTTGTTGT # Right flank : CAGCCCCTTTATA # Questionable array : NO Score: 6.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.29, 7:0.83, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTCCCTCATTCCATTAAAACAAGGATTGAAAC # Alternate repeat : GTTTAGTTCCCTCATTCCATTATAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 365-725 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_554345_length_782_cov_1.844275- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 365 31 100.0 35 ............................... AGTGACTTCTTAGTAGGCAAACATAGACATACAGT 431 31 100.0 34 ............................... AGGGAACCCTTCAGGAATTACGTGCATACGTATG 496 31 100.0 34 ............................... TAATAAGTTACATGAAGGAATGAGAAGGCTGACT 561 31 100.0 36 ............................... TTTAATTTGGTGTTCTCTATCTACTCTTTATATATA 628 31 96.8 35 A.............................. TACTTTAGCGATCCTAACACAGAGCAAGGTATACC 694 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 99.5 35 TGTTTCAATAGGACTAGTGTAGAATTGAAAT # Left flank : TAAGGGAACTTGAAACGACGAATATCGTCTCTGAGGTGAGACTGTTGAAGGGAAGCTATGGGCGTTGAGAAGAGCAAGGTTTCAAGCATCATCTAGTCAACCTTTATAAATGGGGTGCAACACCGGGGGTTGACTTTTACACCCCCATAAAAAAGGTTAAATTCATCCTCCACTAATAAAAATAAGGTAAACAAGGGGTC # Right flank : GTTACGGAACTTGAGAGAGAAGAAAGCGAAGCTCCGTTTCAATAGGACTAGTGTAGA # Questionable array : NO Score: 7.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.34, 7:0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCAATAGGACTAGTGTAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 33-367 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_122628_length_391_cov_1.409091- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 100.0 37 ..................................... AATTTATCAGCACATTTTAACTTGTCCAGTATAATAT 107 37 100.0 38 ..................................... AATAGAAGGATATGCAACACCCTTAAACACTGTCCAAG 182 37 100.0 37 ..................................... GAATATCTATCGCTTTTAATAAAGAGCTTAGCTAATA 256 37 100.0 37 ..................................... TTAATTCTCGTTTCGGCTACCTCGCCATTAAATATTT 330 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 38 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TCTTTGGAATGATTCCAGCTTTTTCCCAAGCTG # Right flank : GAAATTAGCCCAAGCCATTAAAAT # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.93, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 490-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_149153_length_524_cov_3.423174- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 490 37 100.0 38 ..................................... TAGTTATCAGCTGGCCTTTGGAACTCTTAAGGTTAATT 415 37 100.0 40 ..................................... TTCTTCATGAAACCCCAAGCGTGTCATATATTCGGTAAGT 338 37 100.0 37 ..................................... TCATTACAACCATAATCCTTCACTTATGCCTAAAGAA 264 37 100.0 37 ..................................... CTATGGTAATTATTACTGTATCAATTACATAATTACC 190 37 100.0 40 ..................................... AAGTTAATGTAGTAGATCCATATTTATTTATGTTTTCAAG 113 37 100.0 38 ..................................... TTTTAAATCTCTAAAATAATAACTATTTAGTGAAAAAA 38 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 38 GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Left flank : GATCTCAAAAGGGAAAAACGGGAGAAATTGGCTC # Right flank : T # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 52-279 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_154648_length_413_cov_0.842657- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 52 28 96.4 38 ...T........................ CGCTTCCAGCAAGGCCAATTCAGGCGTTCATATCTTGT 118 28 100.0 39 ............................ TCATCAACTAAATCGTAGTAAGGTGCAATAGTTCTAAGT 185 28 100.0 38 ............................ ACGCAAAAGCTCACTGTATTAAAATCTATTAAACCGGT 251 27 78.6 0 ...............TC.T.-G.....A | C [266] ========== ====== ====== ====== ============================ ======================================= ================== 4 28 93.8 39 TTTATTTTAACTAGAAATAGATTGAAAC # Left flank : GTGACGGTAAAAAACGAATAAAAACGCAATTTTTGAGGACTACAGTACCTGT # Right flank : AAGAATGGAAACGTTTAAATAGGTAGACTTCACATTTTTAAATGAGTTAAGTTTCGACCGTGATCGATAGAGGTGACGGTAAAAAACGAATAAAAACGCAATTTTTGAGGACTACAGTACCTGTTTTATTTTAA # Questionable array : NO Score: 6.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:1, 7:0.61, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 59-625 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_158971_length_923_cov_3.115578- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 59 37 100.0 38 ..................................... ACAAGAAAAGAATTAAATGTGTCTGCGGACATGAATGG 134 37 100.0 37 ..................................... TCTTTTTCTTCTGCAGTGTCAGCTTTCTTATAGTTGA 208 37 100.0 39 ..................................... TCTCTATTATCTATTTAGGGCACGATAGTCAAAGTTATG 284 37 100.0 40 ..................................... AGTCAAATTGTCGATTGGACAGGCGGAGAAAATAACGCTG 361 37 100.0 39 ..................................... TTGTATTCGCTTGGTTTGGATTCTGTCCATTGAATGATT 437 37 100.0 38 ..................................... TTCAAGAGTTTAGTCTTTAAACTTGCGTTTACGGTTGA 512 37 100.0 39 ..................................... GCGTGGTAAGTTCAGTTTTGAATTCTTCTTCGGTTGTAA 588 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TACTAGAGAATTGAAATACAAGATTTAAGCGTTCTGCTCAACTATATTGGCTTAATAAG # Right flank : TAATAATCGATTAATTTCATAAACTATATAAGAAATGAGAAGTTGGATAATTCTATGATTCTCATTTATCAAATAACTCTTATTATCTAAAATTCTATCTCACAATTTTCTTGAAAAAATGAATTTATCTTCCATTAGTAGAAGATACTTATTTTCTTTTTATAAGGCTTAAAATCAAACTATTCTCTATATTAAGCTAA # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 37-401 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_171353_length_402_cov_3.065455- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 35 ............................... CCTTCAAAAATCTAGCTACCGCACGAAGCTTCAAT C [38] 104 31 100.0 37 ............................... GTGTTAATGTTTCCTGAACTATCTTTAGCTATAATAG 172 31 100.0 35 ............................... ATTTTTTTCCTTGTCTTATTTAATCTTGTTTAAAC 238 31 100.0 36 ............................... TTGTTTCTAAAGCCCCACTTTTCCCATTCATTTTTT 305 31 100.0 34 ............................... CCTCTTCCATCGTCATAAAAGACAGAAGAAAACC 370 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 100.0 36 TGTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : GAAACAAGTTTCAATCTATTTCTACAGAAATATCCCT # Right flank : C # Questionable array : NO Score: 7.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.34, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 300-35 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_175902_length_968_cov_1.701546- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 300 37 100.0 38 ..................................... ATGCCTAGAATATTCTTTGATAGCGACGGAAACCGACA 225 37 100.0 40 ..................................... ATCATGTGCAAGATTGCTTTTTCAAATACTTTAATTAATA 148 37 100.0 39 ..................................... CATTGATAATTCTGATACAACCAGCTATAAATCCTTCTT 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : AAGCAAATTCTAGAAACAGAAATGTTGCCAGAAGAAACTGATCAAGAAAGAAAATGTGTTGACTGCGAATATAAGAATATATGTCAACCAAGCAACTATTAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAGGAGAAAATAAGAACGAGTCTAATAGTGAAATATGCAAGAATTTAGCTCGG # Right flank : TTCTAAGCACTATATTTATTATGCTCTATACACAA # Questionable array : NO Score: 7.09 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 628-451 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_49890_length_833_cov_3.339943- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 628 29 100.0 45 ............................. AATGTAACGAAATAACACCAGAAATCGGCTTGAAACTTTTAGAAG 554 29 100.0 45 ............................. TTTGTAACTCAGAAAAAGACGAATGACTAAAGAACAAATACTTTT 480 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ============================================= ================== 3 29 98.9 46 GTTACCACCTCCTCTTTTGACGGAACTAG # Left flank : TTCAAGCCCAAGAAAGAAGATTAGAATCTCTCTTGGGAAATGGGTGAAGAAGAACCTGCCTGATAGATCCTGATAGAATATTCTTTCAAAAGTCTAAAAGAATATGAGATGCTGATAGCAATATTATAGCTTAAACCTAAGAATTCGCAAATAAAAATCGTTTTTGTTATATAATTCTGATTCCTTGATTAATCGTATTG # Right flank : TTTGTAACCGCAAAGAAATTCCTTCTAGTCTTTGTTTTTTCCATTTTTCTTTTTCTTATCCTTTTTTTTTCTTCTTTCTTCTTTTTTTTCTTTATTAACCTTTTCTTTTTTTCTTCTCTTTGCTTATCTAAAACTTGATATATTTCTTTTCTTTTTCCATTTTATGTCTCCTTCTTCTTCCTCTTCTTCGTTTTTTTCTC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.10, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCACCTCCTCTTTTGACGGAACTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16-581 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_67692_length_705_cov_2.314879- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 39 ..................................... CTTTTTAGGATATTCTTCTGCTAAATTAGGGGTTTCATG 92 37 97.3 38 .......G............................. TAATTGACCTCATTAAGGGTATATAAGTCTTCTAAAAG 167 37 100.0 39 ..................................... GTTGCATAATTATTTCAGAGATAAGAAAAGCAACACTAA 243 37 100.0 39 ..................................... TAAACGCTCTTTTTCTATTGTAGTATAATCTATCATTAA 319 37 100.0 39 ..................................... ACCGTCTATAACTTCATACTCTACTTTTGAATACCTATC 395 37 100.0 38 ..................................... ATTGCCCCTTTCTTCGCTAAAAAGGTTCAACACTATGC 470 37 100.0 37 ..................................... ATTCGCGGGCCAGCCACTGCAGCACTTGCAGCTGCAG 544 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.7 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : ATAGAGAGACTTTTGG # Right flank : ATATGCACCAAGAGGCGAAACGTTCTGCTCTGGTGACGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAACAAAAATAAGAA # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 275-2 **** Predicted by CRISPRDetect 2.3 *** >lcl|1H_NODE_272570_length_418_cov_0.852234- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275 29 100.0 32 ............................. GATGCTAACGGAGATGTGGTTTCGGGGATTGC 214 29 100.0 32 ............................. GTGATGGGGCGGCTGAATATAATTATGAAGAC 153 29 100.0 32 ............................. TTGTCGGTCGCGGCATCGCCGAGGAAGCCGGA 92 29 100.0 32 ............................. GAATCTGCACGAGTAAAAATCTGGAGAATCCG 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ATTGTCCCCACACGCGTGGGGGTGAACCG # Left flank : AAAAGAAGGCGGTTGTGTGATGATCTATTCGAGCGATGGAGAACAAGGATTTCGGATACGCAGTTGGGGCCGAACCGCTCGCTCCATCAAGGAATTCGAAGGACTATTCCTCGTCCAAGTGTCATAAGTCTATAAAAAAGCAG # Right flank : GA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 337-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_31071_length_350_cov_7.461883- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 337 38 100.0 37 ...................................... GAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 262 38 100.0 36 ...................................... TGTAAAAGTTGATGTAATTTAGTATGTCGATGAATT 188 38 100.0 36 ...................................... GAGCTCCTACTAATTTAGCAGTGCCGAGGTCGGTAC 114 38 100.0 37 ...................................... GAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 39 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 100.0 37 GTAACAATAAAATATCCAACAAAATAAGGATTGAAATT # Left flank : GCCGAGGTCGGTA # Right flank : T # Questionable array : NO Score: 4.08 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.29, 7:1.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.95%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 357-105 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_54737_length_370_cov_2.411523- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 357 36 100.0 39 .................................... TTGAGTCGAATCAGAAACGTATATAGCTTCCACAGCGAT 282 36 100.0 38 .................................... TTAACATCCACGACCAGCTAAATATAATAAATCTATGT 208 36 97.2 29 ........................C........... CTACATGATAAGTTTTTTAGTAGGTTTTT 143 36 80.6 0 ...G...........T...T.......CT.C.C... | AC [117] ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 94.4 36 GTAACAATAAAATATCCAACAAAATAAGGATTGAAA # Left flank : GCCGAGGTCGGTA # Right flank : ATAAGCACTTTTGTTGGATATTTTATTGTTACACATAGATTTATTATATTTAGCTGGTCGTGGATGTTAATTTCAATCCTTATTTTGTTGGATATTTTATTGTTA # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:1, 7:0.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 389-54 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_56702_length_407_cov_0.885714- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 389 38 100.0 36 ...................................... CCGTTAATTTTGCTAAATAATTATTCTCGGTTTTAG 315 38 100.0 36 ...................................... AATTTTCGTTTCCAAATCAGTTATTTTTTTGTTTTG 241 38 97.4 37 ....................................A. GTTTTAGCTAACGACGCTGCAATTGACGAGTTAGTAG 166 38 100.0 36 ...................................... AATGCAGGGTCTTTAAATTCTGAAATCATTCCGTTG 92 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 99.5 36 TAACAATAAAATATCCAACAAAATAAGGATTGAAATTT # Left flank : CATATTACAGCGTTTTTT # Right flank : TGCTACCACCAAATTTCGGTATCGGACCGATGTTAACGTAACAATAAAATATCC # Questionable array : NO Score: 4.33 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.29, 7:1.27, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACAATAAAATATCCAACAAAATAAGGATTGAAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.49%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 73-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_58826_length_474_cov_2.161383- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 73 37 100.0 38 ..................................... TTCTATAGGTCTCTATTATGGATCCAAATTCCCCTGTA 148 37 100.0 39 ..................................... CATTCTTCCACGACACGATATATTACTTCCATTTTTGTA 224 37 100.0 38 ..................................... AAGAAATTATTTTAAATCACCATTTTTATCATTTTTCT 299 37 100.0 36 ..................................... AGAGCTTTTTGTTATTTATCGCTATTAAAATGCGTT 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTAGCAATAAAATATCCAATAAAATAAGGATTGAAAT # Left flank : CAACGAATAAATAATCGCATCTTAACAAAATTTAAATAGGGCTTTAGTGTATTATATTATTAAAAAATTAAGG # Right flank : ACACAAGTTTGGAAACTTTCAATCCTTATTTTATTGGATATTTTATTGCTACCTTAATTTTTTAA # Questionable array : NO Score: 7.54 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.74, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCAATAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 15-581 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_69204_length_665_cov_5.630112- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 100.0 39 .................................... TTCAAATTGTCTTTTACCACTCGAACAAATTCTTGTTTT T [39] 91 36 100.0 39 .................................... TTAGTGTAAGAGTCTGGTCTATAATCTCCCCCATATCTG C [115] 167 36 100.0 40 .................................... TTTTCCTTATTGTATTCAGCTTTATGTTTGGCAAATTGTT T [191] 244 35 91.7 40 ..................AC............-... TGAACGATTAACAGCATGCAACTCAGCATAGCCAACCGAA C [268] 320 36 94.4 38 ...A..............A................. GTTTTTAAGTTAGCAACTCTAAATTTATACCAATTTAA C [344] 395 36 91.7 37 ...A............T.A................. TACTTCTGGTCTAACACGAACGCTTCGAACTGCTTCC 468 36 100.0 41 .................................... TTAAATCTTGGCTTTTTTGATATGGTTTTGTACCTTCTAAA T [492] 546 35 69.4 0 ...A...........T..A...G.TC...-A..GCA | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 93.4 39 GTAGCAATAAAATATCCACTAAAAAAGGATTGAAAT # Left flank : TTAAAAAATTAAGGG # Right flank : ACGTCTGAACTCCAGTCACACTGATATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAACGAAATTCAGGCACACCGAGAC # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCACTAAAAAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 595-853 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_73850_length_878_cov_4.181092- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 595 37 100.0 37 ..................................... TAAATAAAAGCCCAAGTTTCTCGTCTCAATATATTTC 669 37 100.0 37 ..................................... TCCCATGTTATTCCTGTTGATTCACTTGTTTCTACAT 743 37 100.0 36 ..................................... ACTATAAGAACAATTATTACGATCGTAATTATTATT 816 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 40 GTAACAATAAAATATCCAACAAAATAAGGATTGAAAT # Left flank : TTACATCAACTCACGCGCCAGAAGATACGAAAAAGAATTCTCGAACGATAGACCTCAACTCGAGAAAAAATCGTATAGAATCCTTAGAACTCGCTCAAAAATCAAGAGAATAGAAATAAGGCGCCTACAACGAATTAATAATTGCTCCTCAACAAGATTTAAATAGTGCCTTAGCGTATTATATTACTAAAAAATTAAGG # Right flank : TGAGTAGTTAAATAGATTATTTCAT # Questionable array : NO Score: 7.89 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAATAAAATATCCAACAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 291-23 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_84009_length_400_cov_0.908425- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 291 24 100.0 37 ........................ TTTTTTTTCCAGCGCCTCGATCCTTTCTAATACGTAT 230 24 100.0 37 ........................ TTCTGTCCTTGTTTTCTTACAATTGATATGAATGTAT 169 24 95.8 37 .........T.............. GTTACAAGTACAAACATCGTCACAAGTACAAATGTAA 108 24 95.8 37 ......T................. ATTACAAGTACAAACATCGTCACAAGTACAAACGTAT 47 24 91.7 0 ........A...T........... | ========== ====== ====== ====== ======================== ===================================== ================== 5 24 96.7 37 TATCCACGCGAACAAGGATTGAAT # Left flank : ATTATTTTTTAAATTTTTATTCTCTAATCTTTTTAAAGTAGAAATGGTTTCTATAATAAATAGATAAAATTTGCTTGAAGTCCTCAAAAACGAAGAGAAAAGTAGTGTA # Right flank : TTTAAATGTATCCATTAACCATG # Questionable array : NO Score: 6.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:1.04, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCACGCGAACAAGGATTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 305-32 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_145907_length_767_cov_1.381250- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 305 29 100.0 32 ............................. TCCTTATGAACTCTTAACATCTCAATTTCATT 244 29 100.0 32 ............................. TTGATATTGGAAGAAAAAATCAGAATTAAATC 183 29 100.0 32 ............................. TAAGTGGGAGTCCCTGAAACTATAATCTTTAA 122 29 100.0 32 ............................. TAAAAATAAGTTCTTAGAACATTAATTTAATC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CTAACTCCCTTGTTTATGTATTTGCTACTTAATTCTAAGAAATTAGTCTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGGT # Right flank : GGATGTATGCAGGGGAATGTCTTAACTGTGGA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 608-419 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_452507_length_668_cov_0.905730- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 608 37 100.0 39 ..................................... GAAGACCCGCCAGTTCCATATAATCTGATAAAAATCGCA 532 37 97.3 39 ...........................T......... TTTTGTTCGATGCAGAACGAATGTTTGCTATAAGTTCAA 456 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 99.1 40 GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Left flank : CTCACTTATTAGAGAATTGAAATTTTTGAATTGTTGATTATATGAACGTTGAAGCAAACT # Right flank : CATATGTTTGTGAATCTAATCAAATTTGTATATTTGTATGGAATTTGTTTAAACAGAAACTAATAAATGCAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCAATTAATTATTATCAGCTCCTGTTTTAATCTTAATATAGAATTAAATAATGG # Questionable array : NO Score: 6.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.60, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCACTTATTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 441-698 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_513586_length_724_cov_1.453936- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 441 37 100.0 37 ..................................... TCGATTTATTTTGCTATTCAATTCTGACCATCGTTTC 515 37 100.0 35 ..................................... GACCATAAGACGCCAATATTAACGTTAAACTGCAT 587 37 100.0 37 ..................................... TAATAAAGTCCAGCTCCCGTATTAGTCAAATTATAAA 661 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 40 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAAAATTCAAAAGCGTTAAGATTCAAGTTCATGTCTAAAATACTAAAAATTAATATTATCTTCCTAAAATATTCTATTAAATTGTTACTTTCTATTTTTTAAATAAAAATAAATCTTAATTTAATCGATTAAAATATTTACTAAAAGATTGAAAAAAAATATATATTTGTTCCTACATTATTATAATATAATATATAAAA # Right flank : ATCTGTTCCCATTCTTTAAAATAACC # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.13, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 357-22 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_553004_length_412_cov_1.305263- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 357 29 96.6 33 .........................T... GAATGAAAAAATGGATGAAATCAGCATTTTATA 295 29 100.0 32 ............................. AAAATCCCTAAAATTCCGCTTTTACATACGGG 234 29 100.0 32 ............................. GTAGTGAATGGGTTAAAGGCGTTGCTCAATTA 173 29 100.0 32 ............................. TAGAATTTAATGCTGATCCGAAAGCTTCTGCC 112 29 100.0 32 ............................. TACAATAACAGATTTACCTAAGAATATTGTCG 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 ATTATCCCCACACACGTGGGGGTGAACCG # Left flank : CCCCACACACGTGGGGGTGAACCGGTGGTTTACGTGGTCTTGCGTTGGCTGAGTT # Right flank : GTATAAAGAAGATGTTTTTAAA # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:1, 7:1.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCCCCACACACGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 613-53 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_560555_length_672_cov_1.339450- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 613 37 100.0 39 ..................................... ATTTTTTTATCCAATTCACTGTCTATACTCTGTTCTTTT 537 37 100.0 37 ..................................... GGTTCATGAGAGCCTGAAATACCGCCCTCTTCCGAAG 463 37 97.3 39 ...........T......................... AAATCCTTTCTGGATTCATTGATATAAAATTTAACTAAA 387 37 100.0 36 ..................................... AACTGGATATCGCATTTTCCACATTTAAAGTCTAAT 314 37 100.0 36 ..................................... TAGTATGTTTGAAAGGCAATATCTAATATTCTCGTT 241 37 100.0 39 ..................................... TCACCCATGCTAACATCAGCACCAGCACCCATAAAAAAA 165 37 100.0 38 ..................................... CGGGTATATTTAGGCTGTTAAAACAAGAATTATTCAAG 90 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.7 38 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AGCTTCAAAAAGAAGATTGAAACGCTTTCATCGCTGTTTTCTTAACGCCTATAATACAA # Right flank : CTGAATCAGCTTATCAATCATGTCAATATCGTCATGTGTCACAGAATAAATAG # Questionable array : NO Score: 7.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 983-1212 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_562115_length_1228_cov_0.883742- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 983 30 96.7 36 ........A..................... GAGGATAACCAGCACTGAATTCATCTTTACCTACTG 1049 30 100.0 37 .............................. ATTTTAATACCTCGTACATTTATTATCTTTGTTGCTT 1116 30 100.0 36 .............................. TAAAATAAGTGCATTTGTTTATTTCATCTAAAACAA 1182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : AATCAATACAATAAAAATTATTGTGGGGTATGTTCTTTTGAAGAATATTGTTGGTTTGAATAAGCTAACGATGAAAAGAAGAATAGAAACGTTTAAATAGGTAGACTTCACATTTATAAATGAGTTAAATTTCGACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAAGACTACAGTACCT # Right flank : AATCAACATTATCATG # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 335-68 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_603715_length_586_cov_2.374728- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 335 37 100.0 41 ..................................... CATGGACTGTTTGGTCTATTTTCTCCAGGTCTTGGAGCATG 257 37 100.0 40 ..................................... ATACATAAGAAAGGTAACTCATCTAACTTGTTACTTATTT 180 37 100.0 38 ..................................... TCGTAGAATTCATAATTTCCGGCGTTATCTTTTTCGAC 105 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 40 GTTACAAAAGCTAAAGCTCAATTAAGAGTATTGAAAT # Left flank : CTTTGCTGATCCTGACACCCACCAAAATCACTCTAAAAAGCAGTAAGGAGAAGCCTTCTTTTTGTTCTTTTTCTTTCTAAAACTGTTGGGTCTTTTTAAAGTCTGTACCACTTTGGTCACCCGCCAACTTCACCCTTAGAAAAATCCTTCTAGACACATTAGGGTAACATTTTTAGCATCTAGGCGTCTAAGAGTTGTCA # Right flank : TTTTTTTGATTAATTTATTGACAGCCAATATAGTGATGTTACAAAAGCTAAAGCTCAATTAAGAGTAT # Questionable array : NO Score: 7.02 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.42, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTAAGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 51-388 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_611793_length_395_cov_0.813433- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 51 37 100.0 37 ..................................... ATTGCTACTTTTTGAGGTTTCCACTCTGAATATAAGT 125 37 94.6 40 ..........C....A..................... TTTGTTATATTTTTAAATAAATGAGTTGGTAGATAAAATT 202 37 100.0 38 ..................................... TAATAAAGTTGTGCTTGAATCCAATCTATCACTTTATC 277 37 94.6 37 ...........C.......G................. ATTGTTAGCCAGGGAATTGTATTGTTATGAGTAATTG 351 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 97.3 38 GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Left flank : AGGGATTGAAACTTCGCTGTCTTCATCCCAAAGTGATATTCTCCATACCAG # Right flank : TATTTTT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:1, 7:0.75, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATATAATTGACCTGAAGAAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 456-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_646524_length_509_cov_2.782723- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456 29 100.0 32 ............................. TCTATTACATCGTTATGAGATGCAAAATTAAA 395 29 100.0 32 ............................. CTGGTATTATCGGAATCATCTTGAATGTGGAG 334 29 100.0 32 ............................. GTAAGTTAAATGGGAAGAGATGCAAAATTAAA 273 29 100.0 32 ............................. TATGGATCTAATCCTGTCATATTAAAACCTTC 212 29 100.0 32 ............................. GAGATATTCAGCAAAACCATTCTCATAATATA 151 29 100.0 32 ............................. GAACTAATAAACTATATAAAACAGTTGATTTC 90 29 100.0 32 ............................. ACATCCAATAAAATTCAATTGTTCCGAATGTT 29 28 93.1 0 ....................T.......- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CCACACACGTGGGGGTGTACCGGGAAACTTGGATATTATAGAGTTTAATATTA # Right flank : C # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 291-27 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_736698_length_591_cov_2.137931- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 291 37 100.0 38 ..................................... TATATTGATCCATAATTATGTGAAAGATGATCAAACAA 216 37 100.0 39 ..................................... AAGTATATGATACCTATACTATATGGTGAGTCATTATGA 140 37 100.0 39 ..................................... TTCAAATTTTTGTAATTTTATATCATTAATAAATCTAGT 64 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 100.0 39 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : CTTTGCTGATCATGACACCCGCCAAGATTGCTCTGAAAAGCAGTTAGGAGAAACCTTCTTTTTGTTCTTTTTCTTTCTGAAACTGTCGAGTCTTTTTAAAGTCTGTACCACTTTGGTTACCCACCAACTTCACCCTTAGAAAAATCCTTCTAGGCGCGTGAGGGCAACATTTTTAGCATCTAGATGTCTAAGAGCTGTCA # Right flank : TAGAGGGTGATAACAAACGATGGTATT # Questionable array : NO Score: 7.13 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.53, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 391-134 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_792075_length_426_cov_0.414716- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 391 38 100.0 35 ...................................... TTTCATCCGATTCTGTATGTATCCTGTCCTGCAAG 318 38 100.0 35 ...................................... CCCGGATAAGCACTTCTGAGTAGACCGTCTGGTAA 245 38 100.0 35 ...................................... ATGCCATATCGCACTAAATAGAGAGAGATTGTAAT 172 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 35 CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAACT # Left flank : ATATCAACGGTGAAGCAGCGGGAGCGGAAAGAGAA # Right flank : CAAAAACGTATCACTTCATGGGATTTTGGGGAGACGTTGCAATGATGACCCGCCTAAACGGCTTGTCAGGCGTTTCGACCTTGATTATATCGCTTTTCCAGTACATCATATCTTATCCGAAAGACAAGCTCCTG # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.29, 7:1.05, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 17-892 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_806801_length_905_cov_1.539846- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 39 ..................................... TCGAGTAGTCGCATTTCTAATAAAGAATATTTATCAATT 93 37 97.3 40 ..................................G.. TAATAAGATTATTATTATAATAATAGATAATAATGTTTTA 170 37 100.0 39 ..................................... AGTGCCATATTGTATATTGCTAGAAATATTCATGTTAAA 246 37 100.0 40 ..................................... CTTAAGGAAATTTCAAGAATATCTTGATGAGTGTCAATTG 323 37 100.0 39 ..................................... TTGGACAATTTGCAAAATTGGGAGATAAGGCAAAATCAA 399 37 100.0 40 ..................................... CTTGCGAAAAACAGTTTTATGTATTTAAATATCATTCTTA 476 37 100.0 38 ..................................... TATCTTCTGGATTGACTGTTTGAGTCATAGTATTTTTT 551 37 100.0 41 ..................................... ATCATCTTCTTTATCACCTTCTGTTAGTTTTTCTATTAGTA 629 37 100.0 39 ..................................... TGAATCAAAGGTATTGGTGCTTCTGAATAATCTTCAAGT 705 37 100.0 39 ..................................... GTGTCTGCTGTAACATCGTGGTCATGTGCTGCTAAAGCA 781 37 100.0 37 ..................................... TGACTTCTTGCAAGTTCTAACATTTGTTCTTTTGTAA 855 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.8 39 GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Left flank : TTTCCAAATCACTTAAG # Right flank : CAGTTGCTGCACG # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAAGCTAAAGCTCAATTATGAGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 14-730 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_106264_length_743_cov_3.146104- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 100.0 39 ..................................... TTATTCACAATAACTTTTGCAAGAACTGCTTTCTGAGTC 90 37 100.0 37 ..................................... TACAAAATATTTTTATTAATTCATTTAATTGTCTAAA 164 37 100.0 36 ..................................... ATCACTTGTCTTTCAATATATTCTTTATCATCAATT 237 37 100.0 40 ..................................... TTTCTTAATCCTTTATTTTTAATATTAAAATTATCAATTA 314 37 97.3 37 .....................G............... AAATAACTGAATATTGTTAGGCAAATATCAAACATTA 388 37 100.0 37 ..................................... TTTATAAAATCATACATAACCAACTCTCCTGGAGTTA 462 37 100.0 41 ..................................... TTTATAAGTCCATCTGCTGCTATAAGCATTACATCTAAATG 540 37 100.0 38 ..................................... AAAGGAAAATCAATTATACCACTTGGATTAATAGATTC 615 37 100.0 41 ..................................... TTTATAAGTCCATCTGCTGCTATAAGCATTACATCTAAATG 693 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.7 39 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : AGTGGAGCTTCACG # Right flank : AAGATCGGAAGAG # Questionable array : NO Score: 7.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 8-468 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_151952_length_484_cov_1.089636- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 32 ............................. GGAATCGCACGACCTGTTGGAGTCATCGAAGA 69 29 96.6 32 ..........T.................. TGGGATATCCACTTTGTCGAAACCAAACAGAA 130 29 100.0 32 ............................. TGTAACTTGGATCTATGAAGAATGTCAAAGGC 191 29 100.0 32 ............................. AAAGATGGCAAGGTCTACAACGCCAAGTTGCA 252 29 100.0 32 ............................. TTGTAAAACAATTTGAAGAAGTGGAGGACAAC 313 29 100.0 31 ............................. CAAATCTGCAAAACACTTTTGAATCAGTTTC 373 29 100.0 37 ............................. GTATATATAAAATGCACTATAAATGTCATTTTTATTT 439 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.6 33 ATTGTCCCCACGCGAGTGGGGGTGAACCG # Left flank : TTACCCCA # Right flank : CCGAGTATATTTCATT # Questionable array : NO Score: 7.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCGAGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-400 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_159417_length_1498_cov_2.052516- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 ................T........... TTTACATATGACGATAGACAAATATTAATTATT 68 28 100.0 33 ............................ ATGTCAATATTCGGAAAAAACGGAAATGGTCAA 129 28 100.0 33 ............................ GATATGTATTGGATAAGACATATAGATATCCCA 190 28 100.0 33 ............................ ATGGTATTAGCAAATATATGGTTTCCCGATGAA 251 28 92.9 33 ................GA.......... GGCTATCATCCGTTCAAACTACCGAGTATTTAC 312 28 96.4 32 ................G........... TTACTTATTTTGACTGGAAGAAACCTGATGGA 372 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 33 ATTCAATCCTTGTTCGCGTGGATAATAC # Left flank : AACAAAA # Right flank : ACTACTTTTTTCTTCGTTTTTGAGGACTTCAAGCAAATTTTATCTCTATAGTATAGAAACCGTTTCTACTATAAATAGGTTAGAGAGTAAAATATAAAAATCTTACCTTTACTGACACTTTTTTTCCCTATTTATTGGATTCTTTCAAAGAAAGTATTTCGTTCGAATCCATTCAATCCTTGTTCGCGTGGATAATACAT # Questionable array : NO Score: 4.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:1, 7:0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATCCTTGTTCGCGTGGATAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 380-206 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_182134_length_379_cov_4.214286- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 380 26 70.3 37 -----------.......................... CATCGTAATGCCGAGAAGTCGATAGAAACCCTTCGAG 317 37 100.0 37 ..................................... TGTAATACTTGTAAGTTTTTATATCCACTATTGGATA 243 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 90.1 38 GTCACAGAGTAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : | # Right flank : CCCTTCCAGCAGTCTCGTAAAGAACTCTCGTCGATTAAGCTATAAAATTTCAATTTTAAAAGACTGTTGATAAAATATTTTTAAGTGGAAAGATAAAAATATTTAAAGTCTGAACCTATGTTATCATTAAACTAATTTCCAATCAAATATTTTTTCATTATTCAGCTGAATTTTTAAATGGTGAAATTTACAAATAATTA # Questionable array : NO Score: 7.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.50, 5:0, 6:1, 7:1.56, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAGTAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 354-61 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_198644_length_381_cov_2.929134- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 354 30 100.0 34 .............................. ATCTTAAATAGCGCCTTTAGAAGCTCATCTTCGA 290 30 100.0 36 .............................. TCGTAGGAGACTATCATAACAGGTTTTTCGTTACAT 224 30 96.7 36 .....A........................ TATATTGGAGCGTGGGTAAATGTGATTCTTGCTTGG 158 30 100.0 37 .............................. GGGAAGTACCGATATCATCTTTTTCAGCTTTTTTCTT 91 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTTTTGTTTTAACTAGAAATAGATTGAAAC # Left flank : ACCCCTTCTCGTGGGGAAAACGCTACC # Right flank : CTCTAGCCCCCACGGTAATGCAAAATCAACAATATTATGTTTTGTTTTAACTAGAAATAGA # Questionable array : NO Score: 7.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.08, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 388-57 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_264978_length_520_cov_2.208651- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 388 37 97.3 36 ...A................................. ATAAAAAGTAGCAATTAGCATTAACGCCATATCGAA 315 37 97.3 38 ...A................................. TTTGTTTTTTTGTGTTTATTATACATTTTAAGGTTAAA 240 37 100.0 36 ..................................... CACATACTTCGCATTCACTCATATTTTTTTACCACC 167 37 100.0 36 ..................................... AAAATCTTTCAATATTCTCAAGATATAGGTTGTATA 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 GTAGCAATAAAATATCCAACAAAACAAGGATTGAAAT # Left flank : AAATCGTATAGAATCCTTAGAACTCGCTCAAAAATCAAGAGAATAGAAATAAGGCACCTACAACGAATTAATAATTGCTCCTCAACAAAATTTAAATAGTGCCTTAGCGTATTATATTATTAAAAAATTAAG # Right flank : TTTAATTTGGTACATATGTCACGATTGTGGTGCACATTGTAGCAATAAAATATCCAA # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:1.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCAACAAAACAAGGATTGAAAT # Alternate repeat : GTAACAATAAAATATCCAACAAAACAAGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_282907_length_450_cov_2.303406- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1 36 97.3 37 -.................................... AATACAGTTTGAACATTGGCACTACTTAAATTTTCTA 74 37 100.0 37 ..................................... TTCTAGGAAATTTTGGATTAACACTATCTAAAAAAAA 148 37 100.0 39 ..................................... AAAAAATATTCCTTCTGTTTTGTATGTCATGAGTATATC 224 37 100.0 38 ..................................... TTATTAAATCTTAATTTTTCTTTTCTAATTTTTTAAAA 299 37 100.0 36 ..................................... TCTAACATATTGATTACAATTAGGACATTTAGAACG 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 99.5 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : | # Right flank : TTTTCTGTAATGCTTGATATGGAGTTATATTTGTAGTGTCG # Questionable array : NO Score: 7.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 412-14 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_291490_length_414_cov_2.592334- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 412 29 100.0 44 ............................. TTGAATATCCCACTTTTTATCTGTAATTGTTCTACTGTAGCAAC 339 29 100.0 45 ............................. TATTTTTCACCTTATTTTTTCCAAATTAGGAAGTCTAGTAGCAAC 265 29 100.0 44 ............................. TGTTAATAAAATATTGCAAATTCTATTTACTTCAATGTAGCAAC 192 29 100.0 44 ............................. ACAATAACATCAACATTAAAGGCATCTCATCCACACGTAGCAAT 119 29 96.6 47 ...............G............. TCGTAAATTAATAAGTGAAAGTGAATTAGTTAATATCTGGTAGCAAC 43 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================================== ================== 6 29 98.9 45 AAAATTAGCTTCACAAAGAAGATTGAAAC # Left flank : AA # Right flank : GATTAACATTAGTA # Questionable array : NO Score: 7.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAATTAGCTTCACAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 389-55 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_310072_length_468_cov_1.090909- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389 29 100.0 32 ............................. AATGGAAAGCTGGGACATTTAGGGATGAGGGT 328 29 100.0 32 ............................. AAGAATTTAAGGTTAGAATACAATCAACAATT 267 29 100.0 32 ............................. GACTGTATTCCATTATGAAACCAATATAAGAC 206 29 100.0 32 ............................. TTAAAATATTAAAATGAGGTTAAAATCATGCC 145 29 100.0 32 ............................. GTAACATTATTTCAACAATTTACGATTACATA 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ATGATTAAGATTGGATTATACCAAAATTTTACATCATTAAGAAGAATAACCAATTCGCCACTTTGGAAGAAAAAAGAAG # Right flank : GGCATCAATTCCATATCTTCCTCACTATACCCCATTGTCCCCACGCATGTGGGGG # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 443-38 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_314102_length_467_cov_2.188235- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 443 38 94.7 36 A.........A........................... AACAAACTTAAAAACACAAAACCTATTAATTCTGTT 369 38 97.4 35 A..................................... TTGTGATGATTGTATGAACAATCCTATTCCTAAAC 296 38 100.0 36 ...................................... AGATATTGCCGTTTTATTGTATTAGCTAAATGTTCC 222 38 100.0 36 ...................................... TTCTTTAGTTAATCGCGGTACTTTAAGCAAGACTAA 148 38 100.0 34 ...................................... AAGAGTATTATACGAGTAATAAAGAGTTATTGAG 76 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 98.7 36 TGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CATTACCCAAACTAAAAATCATCT # Right flank : CGAACCGTTTAAGGCAGGTATTGTGGTGTCTGTGCCCC # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.29, 7:1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 14-531 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_327122_length_567_cov_1.059091- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CATTGCAGAAATATCGAAATCGATATTCCAAA 75 29 100.0 32 ............................. ACCTAATCGAACTAATAAATCAATTGAAAGCA 136 29 100.0 32 ............................. GGAATAGAAAAGTTCGAATTTGACATTCAAAA 197 29 96.6 32 ..................T.......... TAGTAAATAAAATCATAAAGAGGTATAAACTA 258 29 100.0 32 ............................. GTTATACAAGAATAGTTGCCGAGTTTAATGGG 319 29 100.0 32 ............................. TTGTTGAGTGTTATTGTATAATGGAAAATGGG 380 29 100.0 32 ............................. GATATGGAGTTAATATTATTTGAGAAAGAGAG 441 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : CCTCCTATATATAA # Right flank : TTTCAGAAAATTAAGAAGTAAAGCAATAAAAATTGT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22-502 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_32896_length_564_cov_1.615561- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 100.0 39 .................................... TGAATATTGAGTAAGATATAAGAAAAGACCGTTTATCTC 97 36 100.0 39 .................................... TGTAAAATCCAAATCTGATAAAATAATATATTAGAGCAT 172 36 100.0 41 .................................... CAATCTTTTATTTATACTCTGTAATGTTGAATGTGAAATAT 249 35 94.4 37 .......-.............T.............. CTTCAATACCCCAATACGCATAACTTTTTGATCCTTG A [254] 322 36 94.4 36 .......C.............T.............. CAAGAAGCCTTGAGCTCTACTAACTGCATCAATATG 394 35 94.4 36 .......-.............T.............. GATTTTATATGGTACCCAAGTCTGTGGACACAATGC A [399] 466 35 91.7 0 A......-.............C.............. | A [470] ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 96.4 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAA # Left flank : ACTAAATTTTCAAATAATGATG # Right flank : GCATAATTGTTTTCTATTCATCGGACCGTTTTTTAATGTAGCACAAAAATTAGCTTCAGAAA # Questionable array : NO Score: 7.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.71, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 171-857 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_389891_length_910_cov_2.187739- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 171 29 100.0 37 ............................. AAGAAAGTGGAAGAACTCCTTGTGATACATGTTGAGA 237 29 100.0 37 ............................. ACGACATCGTTTGATGTAACAGAATCTAAAGAAGGAG 303 29 100.0 37 ............................. TAGTAAAAGTATCTATATAATCACCAGTAATTATATC 369 29 100.0 36 ............................. TTTCCTTTACCTCGAATGATTAGTTCTTTGGTCTCA 434 29 100.0 36 ............................. GTAATATAGTAGACTTGTATACTATAGGTAAAGTAG 499 29 100.0 37 ............................. ATAGTTGCTCCAATTAGCTCGTGTTCAAATACAATTT 565 29 100.0 38 ............................. TTGAAAGACTTGAAAAATGATCTACCTGCTAAATTCAA 632 29 100.0 36 ............................. CTCATTACAATCAATCCTTCCTAAAGTTATTATTAT 697 29 100.0 37 ............................. TGTTTTGATATGATATAGATAACACAGGATAAAAGGC 763 29 100.0 36 ............................. GATAATATACACTTCTTTCAAACATCAACAACCATA 828 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTAAGTTATACTTAGTAGTGTGAAAAT # Left flank : ATCAATTAAAAGATAAACGTAAAGATTTCAGCGACAAAATTATAAAGTAAAAATTAGTAATAATATTAAGAAGGGTCAACCTTTATAAAGTTAATACAGAATCGGAGGTTGACCTGAAAGGTATCTCTTGAGATATGTAACAAAGGCAATTAGATGAGATTTCGAGCATGG # Right flank : TATCACTGTTGATCCTGATACAGTCTATATTATAAGGTTTAAGTTATACTTAG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.93, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGTTATACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11-639 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_394354_length_680_cov_1.099458- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 37 ..................................... TTAATAGGACAATCCATAATATTACAATCATTATAAA 85 37 100.0 37 ..................................... AAATAGTCTCCTGAACTTAACGTATAATGAGATCCAT 159 37 100.0 35 ..................................... GAGAAACCCTCTGCTTGTTGCTCTGCGTTATAATC 231 37 100.0 36 ..................................... TAATGTTATTGCTCTTCCTTGTATATTGAGAATCTC 304 37 97.3 38 ....................................G TACATCACACGTTCGGACTCTACAATCCCGACCTTTTC 379 37 100.0 36 ..................................... TCATAACACCATTCACAAAATTTTACATCCTTATTA 452 37 100.0 36 ..................................... TTTAGATACAGAAGTAATTCCTTCCCAATCAATTGT 525 37 100.0 40 ..................................... TCCGTAATACGGGCTCCCATACAAAGTGCACCCTATCTTC 602 37 89.2 0 ......................C..A....A.....C | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 98.5 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CCTCATATCCG # Right flank : ATTACCCAGAAGGTATCTGTATTATAACTTATTACAGTGTC # Questionable array : NO Score: 7.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 41-375 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_396585_length_379_cov_0.984127- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. CTAAACTGAATGTTCTGGCCCTTGTAGATTCA 102 29 100.0 32 ............................. GGATTTAATATTCCAAAAGTTATAACTACATA 163 29 100.0 32 ............................. AGATTTCAAAACTCTTGCAACTCTGTATAATA 224 29 100.0 32 ............................. TAGATTAGATTCTTGAATGTTTTCCCAAACGA 285 29 100.0 32 ............................. ACAAAACAGTGAAAACTATTCCAAAATATAAA 346 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : GTGTACCGAAATGCAGAGGTATATTTTTATGATAATTGGTG # Right flank : TTAT # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_405088_length_432_cov_0.813115- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 173 37 100.0 37 ..................................... AAGGAGCACTATCAGGATTCAGAACTTTAGGAGAAAA 99 37 100.0 36 ..................................... TTACTCAAAATAGATATTGGGGATTTAAGTTGACTT 26 25 67.6 0 .........................------------ | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 89.2 37 CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAAC # Left flank : ATCTGTACTTAATTTATTGAATCGATCTTTGACATATTTTATAATTTATTATTATACAATAAATTAAGGTGAAAAATATATGCGGAATCTGGCTGAAAGGAGTGTGTTTACGGAGGTGAATGGCTTCAAAAAAGAACATTTCGAATATCAAATTTCTTGTTCTAATTACTTCTGGTATCGTGAGTTAGTAAGATTAACGT # Right flank : C # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:1, 7:1.79, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAGAAATAATTCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 351-14 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_411218_length_503_cov_0.989362- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 351 37 100.0 38 ..................................... AATGAGAAACATATTCGATACATTAAATTAACTGGAAA 276 37 100.0 38 ..................................... ATGATGGTGGAAAAAATTGATGTCTTGAATCTATTTAA 201 37 91.9 38 ..............TT..........T.......... AATAATGCTTATTGTTGTGATTGCGGAAAAAAAATGTT 126 37 100.0 38 ..................................... TGACCAAAACACGCCTTTTCTCAATTAGCAAATTATTT 51 37 94.6 0 ........................T.T.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 38 ATTTCAAAACTCTAAATGAGTATTACCTTATTTCTAC # Left flank : ATACTGATTTAGGGTTTTGAAATTTTCCAGTTAATTTAATTTATCGAAGATGTTTCTCATTGTAGAAATAATGTATAACTCATTTAGAGTTTTGAAATCTGTATCTTTTTCTACAGAGTATAGAGTAAATCAATGGGTAATCAAAACTCAGA # Right flank : CGTAAAGTAAAATG # Questionable array : NO Score: 4.27 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:1, 7:0.61, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACTCTAAATGAGTATTACCTTATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 400-42 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_417509_length_435_cov_1.207792- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 400 29 100.0 36 ............................. ACACACCTTGCCGGTATGCTTCGGTTGAACGTTTAG 335 29 100.0 37 ............................. TCTAAACTTCCTTTGTTCAAAGACATTTCATCAACTC 269 29 100.0 37 ............................. ATGTTGATGACATCTTTTCAACTGCAATAGCGGAAAA 203 29 100.0 37 ............................. CAGAAGAATATAGAGATTGGAATAAATCTGTTATTGA 137 29 100.0 37 ............................. TGATAATAAAGAAGCTCGCAAAATGGGTATAACTTTC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTAAGTTATACTTAGTAGTGTGAAAAT # Left flank : CGATAAAACGATAGAGACTAGTCTTACCTGAACCC # Right flank : TATGTTATAATATCGAATGCGACTCTTCTTTTAATAGTCCAA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGTTATACTTAGTAGTGTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 44-379 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_439141_length_388_cov_3.241379- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 44 37 100.0 37 ..................................... ATGAGAGTTTGACCGTATCCCGAAACAAATATATCCT 118 37 100.0 37 ..................................... ACATAGGTTGTTCCTCCGAATGAGCACTCCTTAAACT 192 37 97.3 38 .....................T............... AAAAATCCTTTTCTTTTTATTAAATCTATGATTTCTAA 267 37 100.0 38 ..................................... CCCACATATCTCATGTGTTCAGTAATTCCAATCCACGC 342 37 97.3 0 .........................T........... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 38 GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Left flank : GAAATATCATAAAGTTAAAAGATATCGTGTGTTTTAATTTATCG # Right flank : TAGGTAATT # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.83, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAAAATTAGCTTCAGAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 1-213 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_473095_length_249_cov_1.778689- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 62 29 100.0 32 ............................. GTTTCAGAAAATTAAGAAGTAAAGCAATAAAA 123 29 100.0 32 ............................. TCAATAGTGGAGACTCTCTCGTCAATAATTGA 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : | # Right flank : TTTCAGAAAATTAAGAAGTAAAGCAATAAAAATTGT # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.51, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 511-27 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_48544_length_534_cov_1.140049- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 511 37 100.0 39 ..................................... ATACTTTCAAATGCATTACCGATTCTACAATATAATCTA 435 37 100.0 37 ..................................... CTCTGAAGGCAACAATTACCAATTCCCAATATGCCTT 361 37 100.0 37 ..................................... TTCCTAATGGAATCGAATGGTCTGAGTCTTTGCTCTC 287 37 97.3 38 ....................................G GATAAATCTCGATAAGGATATCCTGCACTAAAAATTAC 212 36 94.6 35 ..........-.T........................ TACTCTCATCAAAGTAAAAGTTTAAAACTTTATTT G,G [175,207] 139 36 91.9 38 ..........-.T............A........... ATTTTGATGCATTTCACCAAATCGTCCCTATACTTAAT A [133] 64 36 91.9 0 .........G-..........G............... | T [50] ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 96.5 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : GATCCAAAATCATCAAAATAGCA # Right flank : TACAAAATCTAATCCTACTTTAATGTC # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.70, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 356-25 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_503139_length_417_cov_1.427586- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 356 37 100.0 37 ..................................... AATTCATGTGTTTTCGGAGTATCTCTTTTGCCATCTT 282 37 100.0 37 ..................................... GATAATACTCTTTTAGATAATTTTATATCAAAAAAAA 208 37 100.0 36 ..................................... CCTAAACAAATATAGGTTATAATTGAGTGGTTAAGC 135 37 100.0 36 ..................................... ATAACTCAAATTTACTAAAAAAATCAAATTAAAAAA 62 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : AATAGCTTCCAATAGAAGATTGAAATTAAGGCTTTTATTAATTAATCGTATTTTGCCTGAA # Right flank : TGGAAAGGTTGATTATTATGTAAAG # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 32-760 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_515299_length_945_cov_2.880196- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================================== ================== 32 35 91.4 39 ................A....A...A......... TTAACTCTCTTATAATATTTTTTTGGAGATGATATGGAC 106 35 91.4 39 ................A....A...A......... ATAAAGTCTCCTCAAGAGGGTGGTGTTATTTACTTGAAC 180 35 91.4 38 ................A....A.....G....... AGAACCAAAACTGGAATATAATCCACCAATTTCTAAAC 253 35 94.3 40 ................A....A............. ATGAATGATAAAGAAAAATTCGAAAAAATGCTTGAAATGC 328 35 94.3 54 .....................A.........A... GGTTGATGTAAATGAAAAAAGGTACCAAAGAAGCCTTAGTTGATCTCTGGCTAT 417 35 88.6 38 ................A...GA...C......... TATAATCGAATTACCCAACGCTTTACCCAAAAATGCAT 490 35 91.4 38 ................A....A...C......... ATCCGTTTCTTCTTTGATGTATATTCAAAAATGCGTAT 563 35 100.0 38 ................................... TTATAAAGATTGTATGACCGAATTCAAGGGATTATTAT 636 35 100.0 54 ................................... GCACAGTTCATAAAACATCTCGAATGGGTAAGAGATACATTCCCGAAAGAAAAT 725 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================================== ================== 10 35 94.3 42 TTCAATCCTTATTTTAGTGGATATTGTTTTGCTAC # Left flank : CATATCTCTACATTACCGTTTCCATGTCAATT # Right flank : TATATTATATTCTTATGAAATATTATTTATTTTTATTTTTTAAAGTATCACCCTTTTTTATTTTTATGATATTTGATAAATTGGACGTTTAGATATAAAAAGGTTAAGTCCTTTCATAAAATAAAAATCAATTTCAGTTTAATAATTTAATTAAAATTTTATTTTTTATTGTAATTATAAGAGAA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.39, 7:0.18, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCTTATTTTAGTGGATATTGTTTTGCTAC # Alternate repeat : TTCAATCCTTATTTTAATGGAAATTATTTTGCTAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 145-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_547313_length_460_cov_0.741742- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 145 38 94.7 37 G...T................................. AAAGGAAAGTCTATAATACCACTAGGATTAATTGATG 220 38 100.0 38 ...................................... ATAATCTCTATTCTCTTCAATGATATATTTCTCTTCCA 296 38 100.0 37 ...................................... TAAGACAATTCGGACAAATGAATTTACCATATTCCAT 371 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 98.7 38 TGTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : AATATAAAAAAGGCTTAATCTTTTTAAAGATTACATAAAAATGCAATTTTAATAAACGCAATAATATCTGCAATATTCCAAAATTCAATTAAAAATACAAAAAATTAAGTATCTAAAAATCTAATTTTATTATATAATAATATAG # Right flank : TGAATCGCTATATTTTCTCAGAGATTTATTAAACCGTAGCACAAACAATAG # Questionable array : NO Score: 6.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.29, 7:1.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1000-738 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_58963_length_1004_cov_1.036488- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1000 38 100.0 38 ...................................... ATAATATATATCTCCTCCATATAATTTAGCTATCTCTG 924 38 100.0 35 ...................................... CTTAGTATTCCATTGTCTAAACTATTTAAAATTGT 851 38 100.0 36 ...................................... GCGACCAGTATTCCATATTAGTTCATACCAATCTAA 777 38 89.5 0 ..............................C..CTC.. | C [739] ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 97.4 37 AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Left flank : ATAA # Right flank : GAAGAAGTAAAAGCAAGGATGGAAGAGAAATTTAGCTTCGAAGAAGAACAAATGAGCGTAGAGCAAACGCTTAACGAATGCTGCCAACGTCTTTTTCCTCTTCTTCGTAAATCTGTTTGTAAGCTTCGTATATGTTTTTAAAGACATCCATCCTCGTAAAACCTCCTTTCTTCTCCAAAGGAAGGCGAACTTCTACCGAC # Questionable array : NO Score: 6.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.29, 7:1.08, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 394-33 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_600085_length_453_cov_1.141104- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 394 30 100.0 37 .............................. CAACAGTTTTTGATAACTGTTCGGTAAACATAGTTCC 327 30 100.0 35 .............................. TGTTTACGAGATTTATGTTTAATAATTCCACCTAA 262 30 100.0 38 .............................. TTAATTAATTTTGGAGACATAAGCTCCTTATATTGTCC 194 30 100.0 35 .............................. TCAAAAGCCTCTCCCGAAAGTACACGATCAGTCAT 129 30 100.0 36 .............................. TTTTATGGCGACTATATTTGGATATAAGGGGATAAC 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTTTTAATCTATTTCTAGTTAATAAATAAG # Left flank : ATCTATTTATAGTTAATAAATAAGTAGATCATCTTGATTTTAATAATAAAAAACATATA # Right flank : GCCTTAATTGAAGGTTATAATATAATTTTAGAC # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.99, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATTTCTAGTTAATAAATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 356-23 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_65933_length_403_cov_4.492754- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 356 38 97.4 35 .....................................A AGAATACATTGAAAACTTAATTAGAGAAGGATTAG 283 38 100.0 36 ...................................... AAAACACACCAATTAGAATATTCTTTTATTGTTTTA 209 38 100.0 36 ...................................... CTGTCGTATTCGTATGTGTAATTATAAGGATTTCGT 135 38 100.0 36 ...................................... CAATACTGTGGAAGCTCCGCAAAAAGCCCCATTGAC 61 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.5 36 GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAACT # Left flank : AAGATTGAAACTAATTGGCATCGCCGTATTAGCGTTGCCCCAAGTAG # Right flank : TATTGGTAATAGAACTATTAAGT # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.29, 7:1.24, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATAAATAGCTTCAAAAAGAAGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 38-455 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_79836_length_501_cov_1.989305- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 38 37 100.0 40 ..................................... TATTATAAAAACTAAATAATAGAATAAGAAAGTTAGTTTA 115 37 100.0 39 ..................................... ATATCATCATATAAGGGATCGAATTCGTCCCATTTTCCC 191 37 100.0 39 ..................................... CTAATTTGCTCTGTTGCACAAATATAATCTTTACATTCT 267 37 100.0 38 ..................................... AAAAACTTCTTTCTTTGGTTATTAGAATAGCCTATAAA 342 37 97.3 39 ............A........................ GTTTTATTTTTTGTTAAGTATTCAGGTATCCAAATAGGC 418 37 94.6 0 .....T..........................T.... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.6 39 GTAGAAATAATTGACCTGAAGAAAAAGGGATTGAAAC # Left flank : ATCTCTAAAACTATTTCTGCTGTTTCTTCCCCTTCTCG # Right flank : AGATTAAATAGAACAACATAAATCAACGTTAAAGACTTTAGAGACT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATAATTGACCTGAAGAAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1726-1575 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_111565_length_1740_cov_1.649101- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1726 29 100.0 32 ............................. TAATGTTCTTAATAAATATTTTGAAGAATTAG 1665 29 100.0 32 ............................. TCTGTATTTCTAAAATCATCAATAATTAATGT 1604 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : AATTAAGGGTTGAT # Right flank : TAATGGGAATATATTATTAACAATTGAAATACAGTTCCTAAATTCTTTTACTGCATACGGAGAGGAAAATTACCGGGGTTTGGCTACCGTCAAGGCAGGTGACAAAGTAGAGATCGACAACTCTGTATATCTCGCTTATCAAACCTATCATCGCCACCAGGTACCGTCACCTGAATACCATGTCTGGGACCAATTTCGAG # Questionable array : NO Score: 8.42 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:2.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-239 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_188703_length_382_cov_0.972549- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 .............................. TTTTTCTAATAATGAAATCTCTCTTGTTCGTTCTGC 76 30 100.0 37 .............................. CTCTTCCTCTGTAGAGCTTGTTTGCCTGCATTATTTG 143 30 100.0 36 .............................. TCATTAAAGGAACAGCAATATTTGCGTCCATTTTTA 209 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 CTTTTGAATTAACTAGAAATAGATTGAAAC # Left flank : TATCTTCGTC # Right flank : TAAAATCGTTTTCTTTCGTTGGTGCCAGGGGGTTTCCAGAAAAAACCCAATGAAAAAAAAACACCCAAACACGTGGTTTTTTTATTCCAGTTGTGACTCTTGAAAAGATAATGCTCGTTTTTTCGTGTTACAATGAATTTTAC # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGAATTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 31-487 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_363306_length_540_cov_1.200969- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. TAATAACAGCAGATATGAAAGAGGCTATTGAG 92 29 100.0 32 ............................. TATATCCCGACCAATATATTGGATATAGCATA 153 29 100.0 32 ............................. GATGTATTGAGTAGAAATTATAGTTCAAAAAC 214 29 100.0 32 ............................. TAATAACTTGGTTTTCTTAAAATAAATGTTTC 275 29 100.0 32 ............................. AATTCCAAGCTTAAAGTATATCCCGAGCAATA 336 29 100.0 32 ............................. ACCACATAAAACTAATGAAAGAAATTAAAGAA 397 29 100.0 32 ............................. CATAAATGATATAGGTATTGGTTGTATTGCTG 458 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 ATTATCCCCACACACGTGGGGGTGAACCG # Left flank : TGATTTGAGATTTAGTATTTATAATAAGCAA # Right flank : GTGCAGGGCGTAAAAATGACGGAAATAATTCATTATCCCCACACACGTGGGGG # Questionable array : NO Score: 8.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCCCCACACACGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-344 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_388665_length_423_cov_1.645270- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. CAATAATTACAGATATAGCTAATATTGAAACT 71 29 96.6 32 ...................T......... TATAGGTGAGATGAGAAAAAGATGAGTGAGGA 132 29 100.0 32 ............................. AAAATAATTGCTATGTTTCCAGCAAAACCAGA 193 29 93.1 32 ...CC........................ AAACCATCAAAAATAATCTTGAAACCTTCCTC 254 29 100.0 32 ............................. TCTATATTTAATTAAAAATAATCAAAAGTCAT 315 29 86.2 0 ...A.......A.......A...A..... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : CCGATCTATA # Right flank : AAACATTTTCTTATCAAAATTTAAAATGTTCACTTGATTTGGGAAGGTAATAATCCTTCAATGTAATGTTGTCTTTCCC # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 442-47 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_439519_length_446_cov_0.746082- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442 29 93.1 32 ..........A......T........... GTGATTATTTGAACGCAAATACTAAAAAAAAC 381 29 96.6 32 ............................T GTAGGTTATGCTGAGCTTCATGCTGTTAATCG 320 29 100.0 32 ............................. AAGAGAAAAAATATCTGAATTGACAAAAATAG 259 29 100.0 32 ............................. GATCATTCTTGAAAGTTTAGAAAATAAAACTC 198 29 100.0 32 ............................. GATGATTGGAAAGGAAAAAGTCCTAAAATAAT 137 29 100.0 32 ............................. AGAAAACAGAAAAGGACAAAAGACAGAAGGAA 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ATCT # Right flank : GGCCAAATATAGCGCTAACAAGCAGCATAAGAGGTTGTCCCCACGCA # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 581-854 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_626754_length_1078_cov_2.086225- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 581 28 100.0 36 ............................ TGAGTGTACGAAATTTTTTCGTACACGGAAGGATGC 645 28 100.0 33 ............................ GCAATTTCGTACTTTAATATAAAGTACGAAATA 706 28 100.0 32 ............................ ATTCCCACCGTGAAAAAAATTCACGGTGGAGA 766 28 89.3 33 .....................T.A...G GCATTTTCAAATTGGTGGACACCCACCAATTTT 827 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ==================================== ================== 5 28 97.1 34 AAATCACCCTTGCAGGTAGGGATTAAAA # Left flank : TCCATGCCAAGGGGGTTCTTTATTAACTTCCATTATAATTAAGATTATCTTTATTCTTATTTAATTATTAATTTTTTAGATAAATTCAATCGAAACTTTCAATAAATAAAATTTCTAATATTTATTATTGCTTTTTGAAAAATCGTTCTAAAAAGGGGGTTTAATTGCCTAAAAATGTATGAATATTGCAATTAATTTAC # Right flank : GTAAGAAAGTAAGAAAATAAGAAAAATTACATCTATTAATATTACTTTTTAAAAAAAAGCTCTAAAAATAGGATTAAATTGCCTAAAAAACACAGAAAAAATGGATTAAATATGGATAGAAAATGGAGATTTTAATAATTTTGTTGTTTTGTCATATCGAATTTCCTTTCTAAATCTATTCTATTGGTGATTTGTCATAT # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:1, 7:0.95, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCACCCTTGCAGGTAGGGATTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 17-352 **** Predicted by CRISPRDetect 2.3 *** >lcl|4H_NODE_716788_length_382_cov_0.952941- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 89.2 39 ......AC..A.T........................ GATAATGTGCCTCCTGCTTCAATAGATTTAGGTATTTCA 93 37 100.0 35 ..................................... ATTCTCACCTTAGTAATACAATCCGAAGCATTCCA 165 37 91.9 39 ..........A.T........G............... TGTAATAATAAATCAATCGGATATAATTCTGCATTTTTT 241 37 100.0 37 ..................................... TAATGTATATCTCCAATAGGAGTAGCCCAAAACTGGA 315 37 97.3 0 ....G................................ | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 95.7 38 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Left flank : TAATCTGATCAATTGCG # Right flank : AATTCTTCTCTAACTCTAATTGATACTTGT # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:1, 7:0.69, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 38-433 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_154382_length_465_cov_0.733728- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 96.6 31 .......................A..... TTAATACCGTGCCATTTAGGCGTGTTTGTAG A [66] 99 29 100.0 32 ............................. AAAGGTAACATCAAACGCCCTACAATGTTTAC 160 29 100.0 32 ............................. TTAATAATGTATTTATAATTCTATTTAATTGA 221 29 96.6 32 ...............A............. ATGATAGTTCTATTGTTTTTTGATATACATCT 282 29 96.6 32 ..........................A.. CCCTTAAGAATTACTTCGACAACTACGAATAC 343 29 96.6 32 .......................A..... TATAAGTTCAGTAAATCCAGCTTTTATTAAAC 404 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.1 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TACCGAATATAAACACGTCTAAATAATACCATATTCCG # Right flank : ATTCTGTTTGTAGATAAGCGTCAGTGTAAATG # Questionable array : NO Score: 7.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:1, 7:1.02, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : GTTGTCCCCACGCATGTGGGGGTATACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23-383 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_213996_length_404_cov_0.895307- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 37 .............................. TATATCCTGTACATCCATATAATCAACTTAGAATTAA 90 30 100.0 36 .............................. TTTGCTCATAATACCTATTAATTTCTTGTATGGTTA 156 30 100.0 36 .............................. GTGATTGTAAACTTGAAAATTTCCAATACAATTCTC 222 30 100.0 36 .............................. TACATAATGGCTTGCTTAATTCTATTTTGATAATAG 288 30 100.0 35 .............................. ATGATGTTTATAATGTGTTCCACATGGCTTATCAC 353 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 38 GTTTGTAATTAACTAGAGATAGATTGAAAC # Left flank : TCATATGACATTTTCATTTTCCG # Right flank : GAAAATGAAAATGTCATATGA # Questionable array : NO Score: 8.12 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAATTAACTAGAGATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 585-15 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_21730_length_584_cov_2.457330- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 585 37 100.0 39 ..................................... GAAAAAATTCTTTTCAGATCTAAGAGAAGACGAAAGTAA 509 37 100.0 40 ..................................... ATTGAATTCATGCTCTCTGCTAATTCAGCAGTAGCCTCGC 432 37 100.0 39 ..................................... TTTTTAATTGATTTAATGATAAAAAATAATCATATTTAG 356 37 100.0 38 ..................................... TAGTTATTAATTGCCCTCTTGAACTATTAAGAACTATT 281 37 100.0 40 ..................................... TTAATATCTTCACACGGAGTATTAATAATAAAAAATGAGG 204 37 100.0 39 ..................................... TCTCTTTTGTTGCTCTAACTGACATTCCCCTTTTCTCAA 128 37 100.0 39 ..................................... GAAAAAATTCTTTTCAGATCTAAGAGAAGACGAAAGTAA 52 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 39 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : | # Right flank : TATTGAATTCATGCT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 280-13 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_235316_length_402_cov_1.727273- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 280 37 100.0 42 ..................................... GAGTTTATTTCTACAGCTCCATCCATTTTCCTACTCATCAAC 201 37 100.0 37 ..................................... GTATCTGGTAATCTTTAATAATGTTAATGTGCTTCAT 127 37 100.0 40 ..................................... TTCATAGCGGTCTGAGCTTGTGCGGTTAAACCATCAGCTT 50 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 100.0 40 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : AGCGCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAAGAGCGTACGCTACAACTAGTACACGAGGTGAAAGTGAAAACTGGCAAAAACGCTTACTAGAAGCAGAATCCCCGC # Right flank : CTTCATAGCGGTC # Questionable array : NO Score: 4.16 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.56, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 895-30 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_23947_length_909_cov_3.375959- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 895 37 100.0 37 ..................................... TATTAGAATATTTTAATTTTGTTTCCCAAAGTTCTTT 821 37 100.0 38 ..................................... TTGCGCTTGGATCTCCAATACGGTACACTTTTTGTTTA 746 37 100.0 38 ..................................... TATCCGATTGATGTCATGGCTAATAACGGTCTTGCAAG 671 37 100.0 39 ..................................... TGATGTTATATGTGATGCAGAATTCCATATAGACAGAGT 595 37 100.0 39 ..................................... TTGTCCTTATCCATCCTTTTTATTGTCTTGGTGTCAATC 519 37 100.0 37 ..................................... TATTAGAATATTTTAATTTTGTTTCCCAAAGTTCTTT 445 37 100.0 38 ..................................... ACTAAAGTTGGGTTAATTGTAATAACAAATTCATCATA 370 37 100.0 38 ..................................... GAAGCTCTACAAAACTTTGTACAACAATTCAAACAATC 295 37 100.0 39 ..................................... TGTATAGGAAAGTATAGGGGTTATTTGTTGACAGCTGTC 219 37 100.0 39 ..................................... TTCTGGAAATTTTGGTATATCAAGAACTGGTGTTTTTTC 143 37 100.0 39 ..................................... AGTCTTTTGACTCCTAACAACACAGCTAACGGTAGTAAA 67 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 38 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : GTCTTGGTGTCAAT # Right flank : TTATTAGAATATTTTAATTTTGTTTCCCAA # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 518-680 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_269067_length_1062_cov_1.620321- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 518 31 100.0 36 ............................... TTATTATATATTCCAGCAAACAATCCTATTGTTGGT 585 31 100.0 33 ............................... GTCCAATAACCGTCAGTTGCTTCGTCAGGATTG 649 31 93.5 0 C.............................G | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 97.8 35 TGTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : ACATATTTTAATAATAACTAAAAGACTTAATGTAAAATGGATTAGAATGTGTTGGTGTAAATTGACTCTTAGTGAAAAGAAGAATGGAAATGTTTAAATAGGTAGACATCACATTTATAAATGAGTTAAGCTTCGACCGTGATCGATAGAGGTGACGGTAACAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACC # Right flank : TTTAATTATAGAAGGTACTACTTGAAACTTTATTTAAACGTAGTATTTGACTTAATTTTTTTTTCAGCTATCATTTTTAACAGCCAAGTTCATTACTTAGTTATGAGAGAAAAAATCTTTATCACATCTATAGGAAATTCTCGCAATTACATGTATACTGATTATATATTTGCTTCATCCGATGTAAATTCATCTATTCC # Questionable array : NO Score: 6.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.34, 7:1.43, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 1109-12 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_290977_length_1153_cov_1.311891- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1109 37 100.0 41 ..................................... TGTTAATCTAACACTAACAGAACCATCACTATGAAAGACTA 1031 37 100.0 38 ..................................... TTATTTCACCTTTTCCTTTTGTTTTTAAGAGGTTGCAA 956 37 100.0 38 ..................................... AGTAAAACGGAAGGATATTAATGTGGAGAAACAAGAAA 881 37 100.0 38 ..................................... ATTCCTGAGACCGAGAATATTATTTACAAAAATTGTCA 806 37 100.0 40 ..................................... GAGTGGGCTGATCAACTAGTCAAATTATCTTATAAACGTC 729 37 100.0 37 ..................................... GTAGATTACATCAAAATGGAAGGTAAAAATTTAATGG 655 37 100.0 42 ..................................... GAAGGAAATTCTTACGACACAATATGTGCACTCTTTTCTGCA 576 37 100.0 38 ..................................... ATCACGTTTTTTTATCTGTCTCATCTTTGTAGAAGTAA 501 37 100.0 38 ..................................... TTTGAGCCGAATTATGTTACAAAAAAAGCATTTGAGTT 426 37 100.0 38 ..................................... ACATTACTGATGAAACTTACAAAGCTGAATTAATCAAA 351 37 100.0 38 ..................................... TTGGAGATATCTATTTATGTCTAAGCCGCCAAACATGG 276 37 100.0 37 ..................................... TTGTTTTTCTCTTCAGCAAAGCGATGAAAGGAGTATT 202 37 100.0 39 ..................................... AATAAACATGAGGAACTATGCGCAGAAATAACGGAATTT 126 37 100.0 40 ..................................... TATGAAAGAATATGAACTCTACAAGGCTGAAAAGACATCT 49 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 39 GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Left flank : TTGAAATATCTTCTGGAGTTTGACGGGTATAAGAGCGTAACTAT # Right flank : TTCTGAAACTTA # Questionable array : NO Score: 7.44 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAAAGGATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 41-619 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_303438_length_654_cov_0.831120- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. AATTTATTTGCTCTCATTTTACCGAGAACTTC 102 29 100.0 32 ............................. ATACTGTTCCTGTTTTTGATGATGGAGATGAA 163 29 100.0 32 ............................. AAGCATTCACATGATAAAACCCAACAGTATAA 224 29 96.6 32 ............T................ GGATAATTAGCAGAACCCCATCCAGATTGATA 285 29 96.6 32 ...............A............. CAACCATTGCTAAAAATAATATACCAATAAGA 346 29 100.0 32 ............................. CGAACAGATATTACATTAATAGACGAAGGTAC 407 29 100.0 32 ............................. CTGAATACGAGTCATATGTAGGAGCAGTATAC 468 29 100.0 32 ............................. AGAATATGAAAACTCAAATTTGAGTAGATTAA 529 29 100.0 32 ............................. GTCCAATCTGGTTTTGAGTTACAAGGTGAAAC 590 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 ATTGTCCCCACACATGTGGGGGTGAACCG # Left flank : GTGAACCGAAACTTGAGAATCTATTAAAAGTATATCAATAA # Right flank : ACTGGAGATCGTATAGATAACGATAATAAGAATTG # Questionable array : NO Score: 8.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:1.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-446 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_336259_length_847_cov_1.722222- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 32 37 100.0 41 ..................................... CATTACTATCCATATCTGTAGAAACAAAGAAATTATTGACG 110 37 100.0 38 ..................................... GGTGTCCCTTCGTCGACCATGAATAAAAGCTTCATGAA 185 37 100.0 38 ..................................... TTTCGTGAGGATGGAAATAGTTGGAAAATCATTGCTTT 260 37 100.0 38 ..................................... AACCTTATCATATCAAATAAACTTCCAAGACCAGCAAG 335 37 97.3 38 .................................C... ATCCAATAGTGTTGTCCTTTAATATTAACTCTTTGAGT 410 36 83.8 0 ......A..A.T......AC............-.... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 96.9 39 GTTGCATATTGAATCTCATTTACTAGAGAATTGAAAT # Left flank : CTTTGATAGGCCGTTTTAACATAAACCCTAGG # Right flank : TTCAATAACTCGCTTTGTTACTATAATTAATCATATGATTGAGGATCTAATCAAAACTGTAAATATCTAGAATTTGTTTAAATAGAAACTAATAAATGTAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCAATTAACTATTATCAGCTCTTGT # Questionable array : NO Score: 7.35 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:1, 7:0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGAATCTCATTTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 427-33 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_342450_length_480_cov_0.702550- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427 29 96.6 32 .G........................... GGCTACGATGTCATACTTCGCTGCGCAGTTTC 366 29 100.0 32 ............................. AAGAATCGAATCATTGTGGTTTGTGGCAGTGC 305 29 100.0 32 ............................. GTCGTAATGATGATTTTAGTTTCGCTCTTACT 244 29 96.6 32 ..............T.............. GGATGAAGATATTCCCGAGTACAAATGAGTGA 183 29 100.0 32 ............................. GGAATCGCACGACCTATTGGAGTCATCGAGGA 122 29 96.6 31 ..................A.......... TCTGTTCCAACAAATCTTGATGCCACGAATA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 ATTGTCCCCACGCGAGTGGGGGTGAACCG # Left flank : CCACGCGAGTGGGGGTGAACCGGAGGTTATCAAGTAATGCTTAAAGCTAATCC # Right flank : GAAGGATATCAAATAAGACTTAAATCTAATCCA # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCGAGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 220-405 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_61409_length_794_cov_2.103448- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 220 36 100.0 39 .................................... AAAAGCTAGCTCTCTTCTAGGTCTCTTAACAACTAAAGT 295 36 100.0 38 .................................... GCAGAAGCCAACCAATGAGAACCTGCGCTATATCATGT 369 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 99.1 39 TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Left flank : ACCACCTATAAGTAAGTGGATAACAATAAAGCTATTTAAGGATTAAGAAATCAAAGAAAAAGAAAAAAAAGCAAATAACAAATTAATAACTGAAATAAAGTAATTCAAGCGTAAATAAATATCAACAAAATCACTGATTATTGACGAAACTAGTTTGTATCAGTTTAAAAAAAATTTCAACGAGGGGTAGCAAAAAAAGC # Right flank : GCGGGGATTCTGCTTCTAGTAAGCGTTTTTGCCAGTTTTCACTTTCACCTCGTGTACTAGTTGTAGCGTACACTTTTTCTCTTTCTCCCTCATTCTTAAAGTTTTTGCTGTTTCTCGCGCTCTAGCATTTTTTCTCTTTTTACGTTACTTCGCTTAAGGCTCCAAGAAAGCGTTTTTTATTGTTCATATTATTGTTATTC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.76, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1025-80 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_105645_length_1137_cov_3.941584- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1025 29 100.0 32 ............................. AAACCTTTACCAAAAGTAAAATCGACGAGAGC 964 29 100.0 32 ............................. ATTATAATTAGTAAAGAAGATTATAATATGAC 903 29 100.0 32 ............................. CTATTTTTGGAACAAATTTATAATAATAAAAA 842 29 100.0 32 ............................. GATTTCTATAATTTAGGATATAACGTTGAAGT 781 29 100.0 32 ............................. AATACACTTTTATCAGCTTTAAAATACCTAAA 720 29 100.0 32 ............................. GCTAAATTAGCGGCTGAAGCTAAAACTAAAGC 659 29 100.0 32 ............................. GATTTGATAGTTAGTTTTATAAAGGAGGTCGT 598 29 100.0 32 ............................. AGCCTTAAGAAAGAGGTTAGGGCGATTATGAT 537 29 96.6 33 ...............A............. GAGACTTTACAATCTTACATGGACCCATTACAC 475 29 100.0 32 ............................. GCATGTAAAAGAGTTAAAAAATCCTTTCTTCC 414 29 100.0 32 ............................. TAAAACCTGAACAAGATTTTGCTTTTGAAAAT 353 29 100.0 32 ............................. GAATTAGTTCAAAAATATCTCGAAATGAATAA 292 29 100.0 32 ............................. ATATGAAAGAAGAAGGAATAATTGAAGAAGTT 231 29 100.0 32 ............................. ACAAACAGTTTTATTCGGGACTTAAGATTACC 170 29 100.0 32 ............................. GAATTAGAAATAAATCTATTAAAATAAAGAAA 109 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TGTAATCAGCTTGAGCGCGCTGTTTTGTCTTCACTTTTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAAAA # Right flank : GATGTAGTTGAAAAGAGAAAAACATCTACAAGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCT # Questionable array : NO Score: 8.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:1, 7:1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 417-62 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_111220_length_1931_cov_5.305432- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 417 29 96.7 36 .....-........................ GCTGTAGGGTCAACGAAAGAAAACATCATGTTCGTG 352 30 100.0 36 .............................. AATATCTACCCCAGACATTATTCTTTCTACTATTAT 286 30 100.0 35 .............................. ATTACTATACAATTTCTTTTCCTCTTTACTATAAT 221 30 100.0 35 .............................. AGACCAATCTTGATCCTCTGTACATCTGTTAATTT 156 30 100.0 34 .............................. TCTTGTCCAGAACCTTTTGACACATAAACGACTA 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : CTTCAAAGCAACAAAACTTGTTGTGCAAGATGCTCTTTTGAAGAGTTTTGTTGGTGTAAATAGACCCTTGGTGAAAAGAAGAATGGAAACTTTTAAATAGGTAGACTTCACATTTATAAATGAGTTCAGTTTCGACCGTGATCGATAGAGGTGATGGTAAAAACCGAATAAAAACGCAATTTTTGAGGACTACAGTACCT # Right flank : CCCTTCAAAATTCTCGTATCCTAAGTAAAAGTTGTCATGTTTAGATCGGAAGAGCGTCGTGT # Questionable array : NO Score: 7.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.97, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 57-270 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_114019_length_10660_cov_9.347384- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 57 30 100.0 36 .............................. CGGATTTTCCAATAACCAGTATCCAGTCTCTGACAT 123 30 100.0 36 .............................. CAATTAAGATTTATTACGACATTCGCGAGTCTCTCA 189 30 100.0 19 .............................. TTGCTTGAGTATTTTTAAT Deletion [238] 238 29 76.7 0 .T..........TT...G..-..T..A... | C,TT [247,255] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 31 TGTTTTATTTTAACTAGAAATAGATTGAAA # Left flank : AAAAAACTTAATTGTTAAACCCTTCAAAATTCTCGTATCCTAAGTAAAAGTTGTCAT # Right flank : TCCCCATTAAGAAATCACTATAGCTTTCGCGTATGTATGATTTTTGGGTTTAACAATTAAGTTTTTTCCGGATTGATTTATTGAATATCCTAAAAAAGAAAATCCCTGTTCTTTTGTTAATATTTTTGTTTTTTCGTTATTAAGGGACAGACCCCTTTTATCAAGGAATTGTTCGAGTTTAGGTATTACCCATGTAGTAA # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.99, 7:0.56, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTATTTTAACTAGAAATAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 5097-4230 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_114201_length_5778_cov_8.137321- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5097 37 100.0 38 ..................................... TTCTTTAGAGTGAATCCTAATTGGTTTGGTTCTTTCAA 5022 37 100.0 39 ..................................... TTCAAATTGTCTTTTACCACTCGAACAAATTCTTGTTTT 4946 37 97.3 39 ........................C............ TTAGTGTAAGAGTCTGGTCTATAATCTCCCCCATATCTG 4870 37 100.0 40 ..................................... TTTTCCTTATTGTATTCAGCTTTATGTTTGGCAAATTGTT 4793 37 91.9 38 ..................AC....C............ GGTTTGCGAATTTCTTTGATGTATTTTAGAGCTTCTTT 4718 37 89.2 39 ..................AC....C..........T. GAACGATTAACAGCATGCAACTCAGCATAGCCAACCGAA 4642 37 91.9 38 ...A..............A.....C............ GTTTTTAAGTTAGCAACTCTAAATTTATACCAATTTAA 4567 36 89.2 37 ...A............T.A.....-............ TACTTCTGGTCTAACACGAACGCTTCGAACTGCTTCC 4494 37 97.3 37 ..................A.................. GATTCAGGGTACATTGCAGATTTTTTACACGATCCTC 4420 37 94.6 40 ..................A.....C............ TATGTAGTCCGTAGACATCTTAATAAGAGAGGCGTTTTCA 4343 36 91.9 39 ...A...............-....C............ CAACAGCTTCAGTAAGAGAAATGTTAAGGTTTCCATTTT A [4325] 4267 37 91.9 0 ...A....T.........A.................. | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 94.6 39 GTAGCAATAAAATATCCACTAAAATAAGGATTGAAAT # Left flank : AAGAGAAAAAAGCGATGTTCCCATTGGCCACAAAAAAAAACTCGCAACGCTTTCAGGATTTTTAATGGAGCTCAACCACATTTTAGAACAAATGGAAAAAATCAAAAATATAGATATAGAATGCCTACAACGAATAAATAATCGCATCTTAACAAAATTTAAATAGGGCTTTAGTGTATTATATTATTAAAAAATTAAGG # Right flank : GAACAGTCGATTTTACTAAATATGGAAAAATTCAAGGGTTTTATTATGCAATAGTAATCGAAAACACTGAGTATGTAGCCATTATTGAAGATCATAAAATTCATTTTAAATCCGAAAAAGAGTTGGTCTTTACTAAAAATTCTACCTTAAAAATTTTATAGGTTACTATCCCTAAATCCTAAGCAAAATTCGCCTTTTGT # Questionable array : NO Score: 6.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:1, 7:0.46, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATAAAATATCCACTAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 88-346 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_119584_length_399_cov_1.687500- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 88 36 100.0 39 .................................... CGTAGAAATTAGATATCGAGTTATTTCGTCCTTAATCTT 163 36 100.0 37 .................................... TTAAAGAAACTACATTCCCAATTATTTGAGAGATATT 236 36 100.0 38 .................................... CTTGTATCTACTTTTTATTCCGTTTCTGCGTGCAAACA 310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Left flank : TTCAGACGTGTGCTCTTCCTATCTCTATATTTATTGCAACAATATCTCTCAAATAAAGTTCAAAGTTTCGTCAAATGCAGCGTCTTCG # Right flank : GTGATAAGCATTAACTCGTCTATTTCGATGTTCTTAAGTTGCAATAAATATAG # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 432-26 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_163400_length_431_cov_0.815789- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 432 33 89.2 38 ----................................. GTTGCCTCTAATATTATAAACCTTTTATTACATGTTGT 361 37 100.0 38 ..................................... GGAGAGAGATTAAGAATTTTTCGGGCTTTTTCGACCTG 286 37 100.0 36 ..................................... TAGAGCTAAAAAATAGATTTAAAAAAATTGGAATTA 213 37 100.0 38 ..................................... TTTATTTCACCTTAGTAAATTGGTAATACGTTTTAAGT 138 37 100.0 38 ..................................... GAAGTTATGGATAAATTCAAAAGAATCTATCAAATCAT 63 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.8 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : | # Right flank : TACATCATCTGGATAAATTCCATGAA # Questionable array : NO Score: 7.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 38-372 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_166072_length_411_cov_0.866197- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. TGCTGTGGATTTAAAAAAATACATTTACACAC 99 29 100.0 32 ............................. AATATTGTAGATGGTTAACGAGACAATTTCCA 160 29 100.0 32 ............................. AAAAACCTAATAATTGTGAAAGATGTAATAAA 221 29 100.0 32 ............................. GCTAAAGATTTAAATTTAGATTCTTGTTTTGT 282 29 100.0 32 ............................. AATTCTTGAGACATTAATTCTAACGACTCCAT 343 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TACCGTAATCGTATTCAAACCAGAGTTCGTAAGAGAAA # Right flank : GTCAATCTTACATCGAAGCGAATACAAAATAATTGTCCC # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62-358 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_169281_length_384_cov_0.957198- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 62 30 96.7 38 ............T................. TTGACTCTGACCTCTTCTATATTATTTATATTGATATC 130 30 96.7 37 .....T........................ GCTCGGAGACCTTTCTTATCTCTTTCATTCGCTTGAG 197 30 100.0 36 .............................. TATATTTACTATTTGAAACTTACTCTTAGGGGGAAG 263 30 100.0 35 .............................. TTGCTACCCATATTTTAAAGACCTCCAACTAAAAA 328 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTTTGCAACTAACTAGAAATAGATTGAAAC # Left flank : CAACTAACTAGAAATAGATTGAAACCTGCTTTATGAGGAGACATCCACTAGCATTTATAACG # Right flank : TTTTTAATGAACTTCAATAAGGTTCT # Questionable array : NO Score: 7.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.99, 7:0.98, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAACTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 183-441 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_220371_length_456_cov_0.753799- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 183 35 100.0 40 ................................... TGTTAATAACTCCAAGCGTATCATATCATCAAAAGTTAAA 258 35 91.4 40 ...T...A.....................C..... TCTCTGAGACAATAAGCTAGTATGAATGTCTTGAGTTCGA 333 35 100.0 38 ................................... TAATTCAATTTCTACGACGCCAGCAATCTGATACATTA 406 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 97.8 40 TAGCAAAGTAGTGTCCATTAAAATAAGGATTGAAA # Left flank : TTTGGACGGAAAACTTGAAGTTTAACTTTTCTTTTAGAACTCGAACTTGGAATTAACTAAATATTTCTTCACTTAAGAAATGAAAGCGACGCCAGTTAAAATCGAGTAGAATTGACTCGTTCGATGAAAAAATCGACATAAAACTCGTGAGCCCAATATTTCATGGTTGGAAGCTCCGCCCGT # Right flank : ATAGACGATCTTTAT # Questionable array : NO Score: 6.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.39, 7:0.45, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGCAAAGTAGTGTCCATTAAAATAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 90-363 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_25359_length_385_cov_1.724806- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90 29 100.0 32 ............................. GTTGCATTAGGATACATATAAAAATCCTCGGC 151 29 100.0 32 ............................. AATATAGGCGGTCTTGTGGAATCTTCACGTTT 212 29 100.0 32 ............................. GATAATGGTAGCTCTAAGGATTATCTATATTT 273 29 96.6 32 ....................A........ CTCCATCTGCAATTTATAATGTTTTACGAGGT 334 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 ATTGTCCCCACGCATGTGGGGGTGAACCG # Left flank : ATACGAGATCGTTTCACGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGAACCGATTAGGTTAATAGCATTTTTAGTTATTAGTATA # Right flank : ATTATATTCCTCAACAATGGGA # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:1, 7:1.35, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428-579 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_260104_length_583_cov_2.370614- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428 29 100.0 32 ............................. AAGTTAATGATATTATTAGAAAATTAGAAATG 489 29 96.6 32 ............................T TTTTGATAGAACGCTTCGTTATCTACATATCC 550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 ATTGTCCCCACGCATGTGGGGGTGAACCG # Left flank : ATATTAACGCCTTTATATGCGTATTTATTATTAAATCCAATATTAAAAAATAACAAAGGTGATAAATTGTATAGAAAAATTTGAAAACTAATTATTTATTGTTAAAGTGAATAAAATGTATGCTTGAGACTACAAAATACCAAAATTGGCTATCATCGTGGAGAATAACCATTTCACTTATTTTGGAAGAAAAAAGAAAT # Right flank : ATAA # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:1, 7:2.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 398-64 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_291199_length_424_cov_1.124579- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 398 29 96.6 32 ...........................A. CTAATTGCTGATTAAATATTTTCAAACTATAC 337 29 100.0 32 ............................. GCAATAGGGCTTCAAGATTATTGGACGGAAGC 276 29 100.0 32 ............................. GAAAATCAGAAATCTATTCCGCGCGATGATTT 215 29 100.0 32 ............................. ACACATATATAAATTAACAATATAGTGAAACA 154 29 96.6 32 ...............A............. GTTATTTCAATAAAAAGAGATCTTTTAGGAGG 93 29 89.7 0 ......T...A....A............. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 ATTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : AGGGCATTTAAAAAGTGGGCTAGAGA # Right flank : GAACAATTATTACGAACGTAATTATTATTCCCAATTGTCACCACGAGATCGGAAGAGCACACGT # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4-828 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_41559_length_1073_cov_2.375264- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. GAATTAGAAATAAATCTATTAAAATAAAGAAA 65 29 96.6 32 A............................ ATGTAGTTGAAAAGAGAAAAACATCTACAAGA 126 29 100.0 32 ............................. TTAGATAAGAGTATAAATAATAAAACTCCTAT 187 29 100.0 32 ............................. GGAAGGGGTTTTCAATAGTAGTAGTAATAGAA 248 29 96.6 32 ...................A......... GCGGTACATAATTCCAAACAATACATCATATT 309 29 100.0 32 ............................. TTAGATAGAAAGATTACGGATAGCGAAATAAC 370 29 100.0 32 ............................. AATAGAAGCGTTATCCAAAGACGGAAGAGCAA 431 29 96.6 32 .....................A....... ATGACGCCACCAAGCCACATAGTAAAGAATAT 492 29 96.6 32 .......................A..... AAAAACCTCGAGGATTTAGGGTACGAGGTCGT 553 29 100.0 32 ............................. CGTTTTGTTGCCTTTCTTAACCCTTAAACTTT 614 29 96.6 32 ....C........................ ATTCCATTTTTTCATAGATTAAAAATAATAGC 675 29 100.0 32 ............................. GAAGTACCAGAAGCCTTATCGTCATCCATGTA 736 29 96.6 30 .............T............... GTTTAAAGAAGTTAGGTTGTATATAGCAGG GG [753] 797 28 82.8 0 ...........A.-.A......C...T.. | A,A,C [799,801,814] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : ACCG # Right flank : ATTTAGTACCGATGTTGGTGAAGGCTTACTACTAGATAGATTTTTAGATTGAGAGGATTTTGAATTTTATCATTAAACACATGCTAAAATACTGATCTGAGCTATTGCCATAACTTAAGGCAGGTTTTCCTGTAATATCATCTAAGCCGTTGCGATCCTGATCCATACATCGTTCAAGCCAAATATAGCTACTTTCATAG # Questionable array : NO Score: 7.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:1, 7:1.10, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-363 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_59846_length_392_cov_0.932075- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 47 23 87.0 7 ..................C.CT. GTAAAAG Deletion [77] 77 22 82.6 40 .....T......G.-...A.... AATAAAAGCATAAGAAGGATCATAGTAATCTGTGAGGATT T [98] 140 23 100.0 44 ....................... AATGATTGGATTCTTTTGATTTCTCCGTTTTTATCTGGTTTGTG 207 23 95.7 44 C...................... CTTGTCATTATATACCCAAAAGCCAGAAAGATTCCAAGTTTATA 274 23 95.7 43 .....A................. GTTTTAAATTGTATAGACATTTTTTTTACCCTTTTCGTTTGTA 340 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================ ================== 6 23 93.5 36 ACTAACTAGAAATAGATTGAAAC # Left flank : TCAATGTCAGTTTTGAATTAGCAGCTAAATATACACACGGTTTGCAA # Right flank : AGTATCTGCCAATTCAAAACTGACATTGA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:-0.41, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1031-1511 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_68964_length_1559_cov_1.738827- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1031 36 91.7 39 ........G..C..........C............. CTTTTACAACGACATTGTTTCTCAATGTTGGGTCTTCTT 1106 36 100.0 39 .................................... CATTTGGTTTTTTTCCAAACTTAGATTGTCAAAAATCAT 1181 36 97.2 38 ...........................G........ CTTTTTGCACCTCTTTGTTATGTATTTCAGAGGCCCAA 1255 36 100.0 38 .................................... TAATTTAATTCCAATTAGACAAGTACTGCCATTTTTGC 1329 36 100.0 38 .................................... CCGTCAAATCCAGTCATTATTATATTACACATTTATTT 1403 36 100.0 36 .................................... CTTTTGATGTGCTTCTTTTGCTAGTTTGTTAATTAT 1475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 98.4 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Left flank : TTAAGAATTAACTTATAAGTCCGCCCACCAAAACTTACCATGGTTTCAAAAAACAATTGTCAAAGTTAAAATTTAAGTCGTTAATAAAAGAAAACTTAGGTGAAGGAATCAATTTCTCAAGAAAGTAAGGGTTCCCTATTTTTCCTTCTAATTAGAGTAAAGATTAAATACTCGATAATTCTTATTATATAATAATAAGA # Right flank : TTTTACATGATAAAACTTATGCAATACGTTTCTCTTGTTGCAATAAAT # Questionable array : NO Score: 7.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:1, 7:0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 737-417 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_69066_length_2331_cov_2.579401- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 737 25 84.0 51 .....................TTTC GCTCTTGGCTTCCAATGGCGACTATTTACCCATCGTTGCGGTTGCAAAGAA 661 25 100.0 51 ......................... CGGATGCTCGAGCAGATAGAGGAAATGGCAGCTAAAAAGGGTTGCAAAGAA 585 25 100.0 51 ......................... TTTAAGCTCTCCTCCCATTTGTCTCATACACTACAAAAGAGTTGCAAAAAC 509 25 100.0 42 ......................... ATTTGAATTCCCTTATCGGTTATTCGGATATTTGAAATGTTG 442 24 80.0 0 C....A...A...T......-.... | G [418] ========== ====== ====== ====== ========================= =================================================== ================== 5 25 92.8 49 TAAAGCTCATTTACGAGTATTGAAA # Left flank : CCCGCCAATTTGAGGATTAGAAGGTGCTCTCTCCTGCCTTCTTTTACTGTAAAAAAGAGTAAAATCTGGCGGGTCTTTATAAACCCCGTTCCACTTTGGTCACCCGCCAAGCTGATCCTTAGAAAATTCTCTTTAGGTTCCTAAGGATAACATTTTTAGTGCCTAGACGTCTAAGAGTTGTCAGTTGCGGTTGCAAAGAA # Right flank : AATGACTTCAATTACTTTTTTTCTTGAAGGAATACTTTATGTTTCCAAAACCTGAAGAGCGATTCTCTCCAACATTGCTAAATTTAGCAAATTGTGCTAGTGTATGAGCCCAAATTTTCCATTTATCTTTCCCGGTGAGTTTGTATTGCACCCATCCTTTGAAGCCTACTTTGAGCTTATTCTTTTCGATATAGGCTTTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.34, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAGCTCATTTACGAGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 28-383 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_77293_length_399_cov_0.911765- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28 30 100.0 35 .............................. ATAAGCTTGAGAAAGAGCCGAAACTTTCCAATCCA 93 30 100.0 36 .............................. ACAATTTGAGTCTCATTGACAGACAAAATCTGTAAA 159 30 100.0 35 .............................. ATAAAACCATGCCAGGTTTGGATTGCCTCAAATAA 224 30 96.7 34 ...........C.................. TTTTTGTTGGTAATAAGACCCATGAATCTCTCGG 288 30 100.0 35 .............................. ACAGTTAGCAGCGCAATCATTCCTATGGATCCAAA 353 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 CTTTTTTAGCAACTAGAAATAGATTGAAAC # Left flank : TGTCCATAATTAATCGCTTCTTTTTTTC # Right flank : CGTTGTTTTTAGTTAC # Questionable array : NO Score: 7.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTTAGCAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 26-367 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_85276_length_423_cov_1.719595- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 26 38 100.0 39 ...................................... TTCAACATGACAGATTCGCTTATAGCTGATTCCAATTGG 103 38 100.0 37 ...................................... ACTACTAATAATATGCTGATAGTAGCAAGTATGAGGT 178 38 97.4 39 C..................................... TAAAAGCAGAAGGTAAGAAACTTATCATTCATGCAGAAT 255 38 100.0 36 ...................................... AACATTAATCCTCTGATAGATCTAATTTGTATTTTC 329 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 5 38 99.5 38 AGTTGCAAATCGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CCTGTGTTTCCAATGACCAAATTTAA # Right flank : TTAGTTTCTTGACCTTCTCTCTAAGGTCTATCAATTGTTGCAAATCGTATCTCAAC # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:0.80, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAAATCGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 316-6 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_97734_length_2953_cov_6.241331- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 316 30 100.0 36 .............................. ACCAATTGTTTGATGTAGTTAGCCCATAAAGTTAGC 250 30 100.0 49 .............................. TTCATTATAACGAACAGAACAATTGTAGCCTCCTTGAAGTAAAGCCCAA 171 30 100.0 39 .............................. CCTCTATTACAGAGAATTCCTAATCCAACAATTTTACCT 102 30 100.0 36 .............................. TTATCCCTTAGTACCCAAAAATAAAATTAAAAAAAA 36 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ================================================= ================== 5 30 99.3 40 GTTTTATTTTAACTAGAAATAGATTGAAAC # Left flank : TATCAATATAATAAAAATTTTTGTGGAGTATGTTCTTTTGAAGAGTTTTGTTGGTTTAAATAAGCTAACGATGAAAAGAAGAATAGAAACATTTAAATAGGTAGACTTCACATTTATAAATGAGTTAAGTTTCGACCGTGATCGATAGAGGTGACGGTAAAAACCGAATAAAAACGCAATTTTTGAAGACTACAGTACCT # Right flank : CAACTA # Questionable array : NO Score: 7.49 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.99, 7:0.74, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 2572-2985 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_103448_length_4966_cov_5.616036- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2572 37 100.0 39 ..................................... TTAATAAAAGTACAAGCACCATCAAGGGAAACAACTACA 2648 37 100.0 36 ..................................... GTAGTAAAGTAATTGTGCTACTTTTGTCCAGTTCAT 2721 37 100.0 38 ..................................... ACCAATAAAGTCCTTTATAGATTTATCTTTAATTACTC 2796 37 100.0 40 ..................................... CATTTTATACACGTAAAAGTATATAACGATTGTTCAAGTT 2873 37 100.0 38 ..................................... TCTGGAGAACTATTAGGTGCTGTACCAGTTCCCGAAAG 2948 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 100.0 38 GTTGCAAATCGTATCTCATCTACTAGAGAATTGAAAT # Left flank : GTAATAGAGAGAATTTCAGTATTGTTAGAAAGAATAATAATACCTAAAACGATAAAAATAAAAAACGAATGAGGACGAAAATTGTTTTGATTTGACATAAAAAAATGCATATCTTTATAAATAAAAGTCAAATCAGAGATATGCAACAAAAAAGAAAATTAGAAAGCGTAAAAGAGAGAAAAACGCGAGAAAATCGAAAG # Right flank : ATATTGTGAGAAAATAAGTGCAATTAGAAGAAAAATAGGTGTATAAGATTCTAGGAGTATTTTATCGATAATTCCTATTCTCTAAAGTTCTACTACACAATATTCTTGTAAAAACTGAATGTGTCTTCCATTAATAGAAGATACTTTTTTTCTTTTAAAAAGGCTTGAAATCATAACATTTTTCATATTTAGTAATTTTC # Questionable array : NO Score: 7.61 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATCGTATCTCATCTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-329 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_110833_length_2384_cov_4.625609- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 1 24 96.0 52 -........................ TTAGAAAACGCTAAAGCTTGGGACATTATTCCCCTAACAAATTTCAATTCTC 77 25 100.0 50 ......................... CTATGTCTCATCGTTATGGTAGGTGTCAAAGACATTTAATTTCAATTCTC 152 25 100.0 50 ......................... TGGCATATGTATCCCGAACTCGATAATTGGGATGGTCAATTTCAATTCTC 227 25 100.0 52 ......................... CATCAAGATTCAAAGAGAGATAACTGCTGATGCAAATGAAATTTCAATTCTC 304 25 96.0 0 .............C........... | ========== ====== ====== ====== ========================= ==================================================== ================== 5 25 98.4 51 TAGTAGCTGAGATACTTTATGCAAC # Left flank : | # Right flank : CGTTCGATTTTCTCACGTTCTTACATGTTTCGCGCTTTCTAATTTCTCTTTTGTTGCATATCTCAGATTTGGAATTTATTTATAAAGATATGCGTTTTTTCACAGGTTGGGTTTACAAATATTTCTGCACTCGCAGTCTACACATTTCTTTTTTTTTCTATCTCTTCTGGTATAATCTCTGTTTCTATTATTTCTATTGT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.34, 7:-0.40, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTAGCTGAGATACTTTATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 5-635 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_116350_length_690_cov_2.415631- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 37 .....................C............... ACTTAAAGCTATTATTAAGAATTTATGATGTGGACGT 79 37 100.0 38 ..................................... GTGGTATTACATTTAGAACAACATTTTGGACAAATTCT 154 37 100.0 38 ..................................... GTGGTATTACATTTAGAACAACATTTTGGACAAATTCT 229 37 100.0 36 ..................................... GAATTGTCGATTAGATGTGTTAATTCATGAAATAAA 302 37 100.0 37 ..................................... TGGTTAGATTTGAATGTTAAAGCTTGTACTAATCCGT 376 37 100.0 36 ..................................... ATATGTAATGGAACACGCAAATCTCTGCAGATTGTT 449 37 100.0 38 ..................................... GCTGTGGTTGCAGTTATATCCCCATCGCAAATAACACC 524 37 100.0 37 ..................................... CAGCATAGTAAGGTTCATTTCCAGATAAATTAACAAT 598 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.7 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : AATCG # Right flank : AAAAAGAGGCTAAAAAGAATGGAAAAAGAACTTAGAGTCGCATTGAAAATAGCTT # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 4481-4818 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_119189_length_13962_cov_4.924033- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4481 37 100.0 42 ..................................... GAGTTTATTTCTACAGCTCCATCCATTTTCCTACTCATCAAC 4560 37 100.0 37 ..................................... GTATCTGGTAATCTTTAATAATGTTAATGTGCTTCAT 4634 37 100.0 38 ..................................... GTAGTAAGTTACGATCGCAGTTATTACTGCAGTATCTA 4709 37 100.0 35 ..................................... CTCAAGATATCTAGCTTTCTATGTAATTCTTCATC 4781 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 38 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : ATAACAATAATATGAACAATAAAAAACGCTTTCTTAGCGCCTTAAACGAAGTAACGTAAAAAGAGAAAAAATGCTAGAGCGCGAGAAACAGCAAAAACTTTAAGAATGAGGGAGAAAGAGAAAAGAGCGTACGCTACAACTAGTACACGAGGTAAAAGTGTAAACTGGCAAAAACGCTTACTAGAAGCAGAATCCCCGCG # Right flank : GGAGGTGAAACAATATGGGTACTTGTAGTAATTGTAATGGAACGGGCACAATATCATGCAAAACATGTAACGGAAGTGGAGAACTAGCATGCAAAACATGCAGGGGATCTGGAAGAAGTTCTTCTGGCAAATATGAATGTAATATTTGTGGAGGATACGGAAACCATACATGCAACCTTTGCGACGGTAGTGGTGACCAC # Questionable array : NO Score: 4.48 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.68, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 10347-10083 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_119189_length_13962_cov_4.924033- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 10347 37 97.3 37 ............................A........ TTATTTCTCCTTTTTCTCTTACATAAGACAGCCTAAC 10273 37 100.0 40 ..................................... AGAACCTCGTGGCGGTGGCGCTTATGAAGCATCCTCTGAG 10196 37 100.0 39 ..................................... GTATAGACATTTTGAGTTAAATAGACAGAATCAGCTCTA 10120 36 81.1 0 ........T......AA.-..........A.AA.... | G [10099] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 94.6 39 GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Left flank : AAAGAGAAGGAGAAAAAAACGAAGAAGAGGAAGAAGGAGACATAAAATGGAAAAAAAAAAGAAATATATCAAGTTTTAGATAGGCAAAGAGAAGAAAAAAAGAAAAGGTTAATAAAGAAAAAAAAGAAGAAGAAAGAAGAAAAAAAAGAAGAAGAAAAAGAAAAATGGAAAAAACAAAGACTAGAAGGAAGTTCTTTGCA # Right flank : TTATGATAACACTTCGGATTCATTCTCCTTCTATCCCATAACTATTCTCTAACTATAGTAGAAGAAGAGGAGATAACTGATAATTGACAAATTTAATCATAACTCTTTGAAATGTGCAAATTGTATAGTTTTTTATAAAATAGGATCTAGTCATTTTCATGATCACACTATACTTTTTTCATTAAATTATGATTTTTCTT # Questionable array : NO Score: 3.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:1, 7:0.65, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTCTAGCTCCGTCAAAAGAGGAGGTGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3-262 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_131659_length_498_cov_2.770889- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 36 .................................... CAAAGTGCCCAGAGAATAAAGCCGTATTGCCAATGG 75 36 100.0 39 .................................... CGTAAACGATTGTATCATGTTCATGATCATTGGGAGCAT 150 36 97.2 40 A................................... GTCAAGCACAGTTTTACCTGTTCCATCAAGGTTTATAACA 226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 99.3 39 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Left flank : ATG # Right flank : GCTGATTGATAACTTTGTGTTTTAATGAATTTACACAAAGAAAGTTTAATAAAAAGCTTATTTAATTTGCTTGTATAGGTTAAAGTATAATTTTTAGAAGAAAAACCATATATAAATTAGAAATTGAGTACAAAACTCTTAATTGAAACATTGAATTAAAACCAAATTAAACATTAAATTATCCATCTACTCAATCTGAT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:1, 7:0.77, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 2-341 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_150582_length_342_cov_4.353488- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2 37 100.0 38 ..................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTT 77 37 97.3 39 .A................................... AACGAGCTCTTTCATTAGAAGGGATTGTGATTCTATATT 153 37 100.0 38 ..................................... TTTGGTAATGGAATATCTGTCCAGCCTGTTCCTGTCAC 228 37 100.0 39 ..................................... GTACCATTGTTTCCCATTCAAACATCTCTCTTCTTTGAA 304 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 39 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : AG # Right flank : T # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.51, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 46-563 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_165652_length_610_cov_2.567288- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 96.6 32 ...........................T. GATTACCAATTAAATTTGTAATTAATACCATA 107 29 100.0 32 ............................. TAAATCGTTGTGAAAAGGAACGTCGTTAACAA 168 29 100.0 32 ............................. TTTTTAAACATCTTAATTTACTCCTTTTTCTT 229 29 100.0 32 ............................. TAATTTAGGAATTAAAATAAAGTTTAAAGTCG 290 29 100.0 32 ............................. ATTTAACTTTAGGAGCAGATTTTAACAAAACC 351 29 100.0 32 ............................. CACGAAGAGCTCGACGAAAAGGACGTTAAGAA 412 29 100.0 32 ............................. TATATTAAATAAAATAGAAAAGGAGGAAAAAT 473 29 100.0 32 ............................. AACGCAATATACAACGCAAGTTTAGAAGAGGT 534 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTTGTCCCCACGCATGTGGGGGTGTACCG # Left flank : TGGGGGTGTACCGAATATTGTCCAAATTGTAAGAAGGCTATAGTTG # Right flank : CATCTGATAAACACCAGCCTTTCAATCCGATGTTGTCCCCACGCATG # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:1, 7:1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCATGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-201 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_170542_length_214_cov_2.804598- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 15 35 100.0 41 ................................... GTACCATTGTTTCCCATTCAAACATCTCTCTTCTTTGAAGT 91 35 100.0 40 ................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTTGA 166 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 41 TGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : TGTTCCTGTCACGTT # Right flank : ACGAGCTCTTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.39, 7:0.37, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 351-19 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_172747_length_385_cov_0.961240- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 351 37 100.0 36 ..................................... ATGGATTACCTCCAATTGTCCATGTTCATCTTCTAT 278 37 100.0 38 ..................................... CTTCATAATCCCATTGTTCTTCGCCACCAGACATCTCA 203 37 100.0 37 ..................................... ATAAATCCGCCATTATTATTTTTATTGTCTGACATAA 129 37 100.0 36 ..................................... ATGGATTACCTCCAATTGTCCATGTTCATCTTCTAT 56 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATATATTTGGTTTTCTATTTTATTTTCCATTTTT # Right flank : TTATAGAAGCAAATGCCAC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 15-350 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_176092_length_404_cov_0.895307- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 100.0 36 ..................................... TCTAAATCATAAATAAATGAACTTAATATGAAATTA 88 37 100.0 39 ..................................... TAAACTGAATCATCATCAGGATCAATCTCTAACCAATAA 164 37 100.0 38 ..................................... ATCACAGAAAGGACAATTAATCTTGAACATTTTCATTT 239 37 100.0 37 ..................................... ATCATTTGTCACGATTGTATCAGTTCCAGCTACCAGC 313 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CCATCAGAGTCCCAG # Right flank : CCTGAATCATTTTAAAATTAGATTCTAAATCCTTAGTCGCATTGAAAATAGCTT # Questionable array : NO Score: 7.65 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.85, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 457-48 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_180266_length_458_cov_2.996979- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 457 37 100.0 39 ..................................... TTTGGAACTTCCTTTTCAAAACAACCATTAACACATTTT 381 37 100.0 38 ..................................... AAGAGTAATCATGAGTACAGAAATGACCTTCGTTGTTT 306 37 100.0 36 ..................................... TCATAACCTTTATTCTCCAATGAAAAACAAACATTA 233 37 100.0 36 ..................................... ATTGTATTCGGGTTTTTCTGTGCTCATCGTAATTTC 160 37 100.0 38 ..................................... GGCATCTCTAGATACTTACTTGTATCATATTCGCCCCA 85 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 38 GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAC # Left flank : A # Right flank : CATGGAATACCACATTCACATTTTGGAGGCAAGTTTATGTAGCAACAA # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCACAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 58-400 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_228466_length_428_cov_0.823920- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 58 37 100.0 36 ..................................... ATCATGAAGATAACACATTCAACATCTTTCATTTCA 131 37 100.0 43 ..................................... TAGAAAGGTAAGGGAGTTGTGTGATAAGCTTGGTTAAGTTTGA 211 37 100.0 39 ..................................... CATCATGTTATCTGCTTGAAATGGTTCAAACTGTTTAAT 287 37 100.0 39 ..................................... TCAAATTATAGATAGACCAAGACTCCACGATGAGGTTGT 363 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 100.0 40 GATACAATGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CTTCAAATAGAAGATTGAAATTTCCATTGATAATGATATTCACCCACTTTCCATTTTG # Right flank : TTTAATTCAACAATCCTCTCTCTTGCCT # Questionable array : NO Score: 7.37 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.57, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAATGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 219-7 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_260869_length_406_cov_1.974910- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219 29 100.0 32 ............................. AAGTTATAACATATCCCCCAATTCATTTAAAA 158 29 100.0 32 ............................. AGTATATAGTAAAACAAAAAGTCTTTATAAAA 97 29 100.0 32 ............................. AATAGATATAAACTCAAGAAGTAGGGCGACTG 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : TTTATGTATTTGCTACTTAATTCTAAGAAATTAGACTAAAATTGGTGATAAAAAGAAGTTATAATCAATTGAAACAGGTAATATGTTAAAAAAGCGTGATTAAACATAATGTTTGAGCCATCTCAATACCAAATTTTTCAATCTTTAATGAGAATAGCTTATTTTTTGTTATGGAAGAAAAAGTTGG # Right flank : GGAGTAT # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.51, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 470-59 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_275723_length_531_cov_2.309406- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 470 37 97.3 39 ...............T..................... TAGCTAATTTGCGTAATTCCCTTATTTCCATTAATAAAT 394 37 100.0 39 ..................................... CACAAATCCTTCAATAATCATACCAAAAATCGGCAAAAG 318 37 97.3 37 .......A............................. TAAAAAAGAGTATTGTAGAAAGTACTGGAAAAACCGC 244 37 97.3 36 .......A............................. AAGTTGTGTAAGACTTCTATGGATATTTTTATAAGC 171 37 100.0 38 ..................................... TATATATCATTTTTATCTTAACCTCTCAAACCTTAATC 96 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.7 38 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATAGCTTCAAATACAAGATTGAAATAAGAAAGAAGGAGAGTCATTCCAAGTGGTTATAAAT # Right flank : TGATAATACCCAACCTTTCATATGAGCTTTATACAATACTCTTTTTTAATTTCAATCTT # Questionable array : NO Score: 7.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 38-669 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_27664_length_678_cov_3.045372- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 83.8 37 T..T...G.T..T..T..................... TGTATTAATCCATTCCGTATTTTGTGTTTTGGTATCC A,TCA [42,52] 116 37 97.3 38 .......A............................. GTAAAATTTCCACTGGTTGTATGACCAAGAATCGTTAT 191 37 97.3 37 .......A............................. ATGATAGACTTGTACTCCGTAACGAGATAATCCAATT 265 37 100.0 38 ..................................... TCTATAATATTGTGTCCAGTCCCTGCTAATCGAAATCT 340 37 100.0 36 ..................................... TACCATTGAGAAGCACATTCTTCATAAAATTCAAAT 413 37 100.0 37 ..................................... GTAAACATTTGACCAGGCATCTTAGTTCTTCACCCAC 487 37 100.0 35 ..................................... AATATAATTTGAACTTCACTATTCTTAGGTAAAGG 559 37 100.0 36 ..................................... TTAACATCTTCTGCATACTATCGATTTTTGTGTCTT 632 37 97.3 0 ....T................................ | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.3 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TTTTCAATGCGACATTTGAATTTTATGAAGAATGTGCT # Right flank : TTATATCCG # Questionable array : NO Score: 7.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 361-25 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_28143_length_679_cov_2.172101- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 361 31 90.3 30 .A..................A........G. AATGTGGATTACTGGAAATTTTAGCAATTA 300 31 96.8 30 ..............................T AGAAGGGCTGTAAACCTAATCCATCGAGAG 239 31 100.0 30 ............................... TTTTGACAATGTCTTAACGGACAAACAGGT 178 31 100.0 30 ............................... AATAGTTAACATTTATTATTATTATTAACA 117 31 96.8 30 A.............................. TTTTCATTACCCTGTGTTAGATTTCAAAAC 56 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== ============================== ================== 6 31 96.8 30 CGGTACACCCCCACATGCGTGGGGACAACTA # Left flank : TGCAACACACTTATCAGCACTTCTCTGGAATCGAAACGGGAAATATTCTTGATTTATTAAATCTTTTTTAAAAATTTCTGCTCTAACTTATGGAAATAGTACAGATCAGTATTTTAACATGTGTTTAATAATAAATTTCAAAATCCTCTCAATCTAAAAATCGATCTAGTAATAAGCATTCACCAACATCGGTACTAAAT # Right flank : ATAACTGTTCAGTAAACATTTGTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.34, 7:0.34, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTACACCCCCACATGCGTGGGGACAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 10-349 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_294921_length_391_cov_0.939394- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 40 ..................................... ATAAACATTTTAATTGTAGGAAAATGAATATCTGGATAAT 87 37 97.3 39 ................T.................... TGGGTGATTCAGATAACTTTCATAGTATTCTGCGTATGC 163 37 100.0 37 ..................................... ATTTCTTCCCACGTATATAACTCAGGAACCCATAATA 237 37 100.0 38 ..................................... TAATATTTATGCTCTTAAGTAGAGCTATTACTTCTTTC 312 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 39 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : ATCCAAATCG # Right flank : TCTTTAAAATTACATCTAAAATTTATTTTTGCTGTTGTCGCA # Questionable array : NO Score: 7.36 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.59, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 422-16 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_315964_length_486_cov_4.821727- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 422 37 100.0 36 ..................................... CAAAGATTTTAGCAAATTGATTTGGGTCATTTTTGA 349 37 100.0 35 ..................................... AAAAATGATCTTCAAGATATCACCTCAATCAATCA 277 37 100.0 39 ..................................... TCGTGAAACCAGAAAGCATCACAGAGATTAAACCAGTGA 201 36 94.6 37 .....................-.A............. ATCAATAAGAAAAGAAGAACAAAGATTCCAATCGTCT A [176] 127 36 94.6 37 .....................-.A............. GTTGAAGACATATGATAAACATAAATCGTATAATCAT A [102] 53 36 91.9 0 .....................-.A............G | A [27] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.9 37 GTAGCAACAAAATTAGCTTCAGTTAGAAGATTGAAAC # Left flank : TAAATCAAAGAAATAGATAAAAAATTAAATACTTTTAAATATAAATATATTATAAAATAATATA # Right flank : GTTAGCAACAGCGTCA # Questionable array : NO Score: 7.74 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:1, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAAAATTAGCTTCAGTTAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 365-32 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_323031_length_387_cov_1.846154- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 365 37 100.0 37 ..................................... TATCTTAATTTTAAATAATCATTTAATACATAAACAT 291 37 100.0 38 ..................................... CTACTAATCAAGTTAAAATTAATATTCACATCTTCAGT 216 37 97.3 36 ..............G...................... AAGTAATGAGATAAATCGCTATCTGCCCAATCGACA 143 37 100.0 37 ..................................... TGTATTAATCCATTCCGTATTTTGTGTTTTGGTATCC 69 37 97.3 0 .......A............................. | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CACATTCTTCATAAAATTCAAA # Right flank : TGTAAAATTTCCACTGGTTGTATGACCAAGAA # Questionable array : NO Score: 7.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:1.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 322-56 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_359600_length_1499_cov_3.986880- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 322 37 100.0 39 ..................................... TTTTTTTCAATTCCTGTGGTCAATGTGGAGAGAATAAAA 246 37 100.0 41 ..................................... ATTCGCGGACCAGCTACTGCAGCACTTGCCGCTGCAGATAA 168 37 100.0 38 ..................................... CTGTTATTTCAAAATCTTCTGGAAAAATATTACTTTCT 93 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 40 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CAACTAATCATAGAAACAGAATTATTACCAGAGGAAACAGAACAAGAAAGAAAATGCGTTGACTGTGAATATAGGAATATATGTCAACCAAGCAGCTATTAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGAACGCTCCTAATAGAGAAAAACACGAGAAATTGGCTCGG # Right flank : TGCTTTCGACCGTTGGACAATTCGACATATGATAGGAAGGTTGCAAATAGTATCTC # Questionable array : NO Score: 7.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.46, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 416-8 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_50765_length_429_cov_0.821192- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 416 36 86.1 36 ..T.......GC..TT.................... TTTATATCCGCATCTGGAATTTCTGTCATAGATCTG T,T,T [406,410,412] 341 36 100.0 39 .................................... GAATTTGGCACCCATATATCCATCGTTGCAAAGTTAGAG 266 36 97.2 38 ..A................................. ATAAACATTTTAGCTGTAGGAAAATGAATATCTGGATG 192 36 100.0 39 .................................... ATGTTATCTAACATTGATTGATAATCACTAAATAAATCG 117 36 100.0 37 .................................... GCTTTCTCCAAGAGATAAATATATATAAAATAACCAA 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 97.2 38 TCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : CTACTAAATTTCA # Right flank : TTTAGTAG # Questionable array : NO Score: 7.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.61, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 21-354 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_52445_length_435_cov_2.720779- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 37 ..................................... AATCTTAATGGCCCAAAATAAGGTACTGCTACTACAT 95 37 100.0 37 ..................................... TTTAGTATGTTATTAGCTGCTTGGTATGCAATTTTCC 169 37 100.0 38 ..................................... GGAGGTTTGAGTCTCGCTCTTAGTGTCGCCCTTTGACC 244 37 100.0 36 ..................................... TCTAAGTCCAAATCAAGCAAATTTAAAGTTCTTTCT 317 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : TTCTTTCCAAAAACTCATTTG # Right flank : CAAATAAACCTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAA # Questionable array : NO Score: 7.81 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 1-335 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_57811_length_411_cov_1.404930- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TAAAGATATGGTCGATAGATTTAGATTATTAA 62 29 100.0 32 ............................. GACAGAAACTATATTGAGGACTACCTTATTAA 123 29 100.0 32 ............................. CACATAGCATCAATATCTCCGGCTGCAGTTAA 184 29 100.0 32 ............................. TTGTATTTGGAAAATCTAATTCTGGAATTGAT 245 29 96.6 32 .......................A..... TAGGAATAAAAGTGTGAGTAGAAAATGAAGAA 306 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : | # Right flank : TGTATTTGGAAAATCTAATTCTGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT # Questionable array : NO Score: 8.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1339-1911 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_60024_length_5008_cov_4.870928- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1339 37 100.0 40 ..................................... ACCGCTCCTATCTACGGTTTTAAACAGTCTGCTAACACTT 1416 37 100.0 42 ..................................... TTATACACATAATCAATAATATTAGAATTACAAGCATTACAA 1495 37 100.0 40 ..................................... TCTTGGTAGTTTGACATTGTTTTATCACTTTCCATAATAG 1572 37 100.0 38 ..................................... AGACTATCTATTACTTTACCTAAAAATCCTAAACCAGC 1647 37 100.0 40 ..................................... ATCAAAAGACAATATTTCTTCCAAAGTGAAATGATTAACA 1724 37 100.0 38 ..................................... CTCTGCATCGTAGATAAATGCAATTACATTAATTGATA 1799 37 100.0 38 ..................................... TCGAAGTGTTAAGAATTAATGACAAAGAAGTGCAAAGT 1874 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 100.0 40 GTTGCATATTGTATCTCACTTACTAGAGAATTGAAAT # Left flank : TATGACATTTAAAGATTTTCAGTAAAAGTAATGACTAGCTTGAATATTTTAATTTAAAACATAAACATAAACAGGTTGAATTAATAGGTTGATGAGTAGAAAAATGCATATCTTTTTAAAGGATTTTCAAATCGAAGATATGCAACAAAAGAGAAAATAAGAACGCTCCTAATTAAGAATGACGAGAGAAATTGGCTCGG # Right flank : CATCTGTTTGTGAATCTAATCAAATCTGTATATTTGTGTGGAATTTGTTTAAACAGAAACTAATAAATGTAGATAATGTAATTGTATCTAGGAACATCCGCGTCTGTTTCTGGATGTTAAGGGAACTTTTAAATTCCCTTTTCCCTTCACTTAACTGTCGTAAGCTCCTGTTTAAATCTTGATATAGAATTAAATTGGTC # Questionable array : NO Score: 7.36 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATATTGTATCTCACTTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 1483-15 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_61703_length_1547_cov_3.699296- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1483 37 94.6 37 ..................C........A......... CTGTATTTCAAAATCTTCTGGAAAAATATTACTTTCT 1409 37 100.0 38 ..................................... GCTTTCGACCGTTGGACAATTCGACATATGATAGGAAG 1334 37 100.0 38 ..................................... AATACTCTTCTTCCTCTTCTCCAAACATTTCGTTAATT 1259 37 100.0 39 ..................................... TGGTATCATTTTCATTGTGCTGCATAAGTTCCCTTTGAA 1183 37 100.0 40 ..................................... CAATTTCTACAAACAGTTAAACCTTGAGAAGTTACAAGTT 1106 37 100.0 39 ..................................... CATAATTACCTCTTGTAACAATATTATCAGTTATTGTCT 1030 37 100.0 39 ..................................... TGAACTTACAAATAACTGTTACTGGTGCTTGCACTGTTA 954 37 100.0 36 ..................................... TCTTCTAATGATTGTTGTTCAAACATTTTAATCATC 881 37 100.0 39 ..................................... TATAATATTCTTTTTCTAAGCCAATCTATGAATTTTCCC 805 37 100.0 39 ..................................... TATAGGAAATCCTCCTTAAGTTTATGTAATGATATAAGT 729 37 100.0 38 ..................................... TAAGCCATTTTGATAATTTTAAGATCGGCATAACGAGT 654 37 100.0 39 ..................................... ATTGTTTGATTAGCTCTTGAACTACAAATAGTTTTAACC 578 37 100.0 37 ..................................... AACAAATATTCTTCTGTTTTAAGTTCATTAACTAGTA 504 37 100.0 40 ..................................... CTCATAAAAATAGATCCGATTAATCTCCCTGCTGGTGGAA 427 37 100.0 39 ..................................... TTCAAATAATAACCGAGTGTCGCTTGAATAACCATATCT 351 37 100.0 37 ..................................... TTAACTAATTTCTTACGACCACAAGGAAATAGAGATG 277 37 100.0 40 ..................................... TATGAATATATTGTACTACTGAACCTTTTTTAAAGAGTAA 200 37 100.0 36 ..................................... AAGTAAAGTATGACAGCTTCATCAGCCCCACGATGA 127 37 100.0 38 ..................................... TTAGGTAATGCCAAATATTGAGCATCATTAGCGCTTTT 52 37 97.3 0 .A................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.6 38 GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Left flank : CACGTGACTGGAGTTCAGACTTGGGCTCTTCCGATCCCTACGGCAGCACTTGCCGCGGCGATTA # Right flank : TAACGAGCTCTTTCA # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATAGTATCTCAACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 452-34 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_74568_length_1117_cov_2.819192- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 452 36 100.0 41 .................................... TTAAGGTCGGCAAACCGTTCGATATACGGGAGTAAAGGCGT 375 36 100.0 41 .................................... TTCTGGTGTATAATCCCAAGAAACATTTGTTCTTAAATAGA 298 36 100.0 41 .................................... GTATAAGCAATAAAGCACAATTCACTAAAACACAATTTCTT 221 35 91.7 40 ..........-.T........C.............. GATTCTCTTGAGTCGCACCCAATCATAGAATTTTCTTAGG A [215] 145 35 91.7 39 .G........-.T....................... GATCGGATATACCGCTTGTTGCATTAAAAAGATTTCTTA A [139] 70 35 94.4 0 ..........-.T....................... | A [64] ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 96.3 41 GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAA # Left flank : TTCATCATATAAGTAAAATATATATTGTTCTAAAAAAAATTAAATTCAATAAAATAATATAAAAAAGACTTAATATTTTTAAAGATTATATGAGAATGCAATTTTATTGAGCGAAATAATAACTGCAATTTTCCAAAATTCAATCAAAAATACAAAGAATTAAGTATCTAAAAATCTAATTATATTAAATAATAATATAG # Right flank : AGATTTTAGTAAAAGACTCAAAATGATCAGCTAT # Questionable array : NO Score: 7.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:1, 7:0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCACAAACAATAGCTTCATAAAGAAGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 1298-1483 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_94570_length_2413_cov_7.003062- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1298 36 100.0 39 .................................... AAAAGCTAGCTCTCTTCTAGGTCTCTTAACAACTAAAGT 1373 36 100.0 38 .................................... GCAGAAGCCAACCAATGAGAACCTGCGCTATATCATGT 1447 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 99.1 39 TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Left flank : ACCACCTATAAGTAAGTGGATAACAATAAAGCTATTTAAGGATTAAGAAATCAAAGAAAAAGAAAAAAAAGCAAATAACAAATTAATAACTGAAATAAAGTAATTCAAGCGTAAATAAATATCAACAAAATCACTGATTATTGACGAAACTAGTTTGTATCAGTTTAAAAAAAATTTCAACGAGGGGTAGCAAAAAAAGC # Right flank : GCGGGGATTCTGCTTCTAGTAAGCGTTTTTGCCAGTTTTCACTTTCACCTCGTGTACTAGTTGTAGCGTACACTTTTTCTCTTTCTCCCTCATTCTTAAAGTTTTTGCTGTTTCTCGCGCTCTAGCATTTTTTCTCTTTTTACGTTACTTCGCTTAAGGCTCCAAGAAAGCGTTTTTTATTGTTCATATTATTGTTATTC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:1, 7:0.76, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCACCTCCTCTTTTGACGGAGCTAGAATGTAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1068-2395 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_96782_length_4481_cov_4.416169- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1068 36 100.0 40 .................................... TTAAGATAATGCAAAAACAGTTCAAGATAACTGTCTTAAA 1145 36 100.0 38 .................................... TACAGTAATATTTTCATTGGGGAAAGTATATTCTCTAT 1220 36 100.0 38 .................................... TGCTTTGCGTCTATCTCCACAAGGTAATCAACAATGTC 1295 36 100.0 38 .................................... TTTTCACGTACTTGACAGCCTAGGACGACTACACGACT 1370 36 100.0 39 .................................... TAACATCATCATAATTTCTTCAATAAAATGTGAAACTCT 1446 36 100.0 41 .................................... TTGATATATTCCTTGGTTGCTGGTGGGACAGAAGATCCCTT 1524 36 100.0 42 .................................... TATTATTTATCGTCTAACTTGGTTTGTTTGGTCTTTTTAGCC 1603 36 100.0 38 .................................... TCATTATGCACAAAAGCCATATTACTAAACATGTTATA 1678 36 100.0 36 .................................... TGCTCGAATAATCTCTTTTACAGCTTGTTCCTTAGA 1751 36 100.0 39 .................................... TTGTAATATCATCGGTTGTGCTTCCAAGCTCAATGGTAT 1827 36 100.0 39 .................................... TATGGTCCATTTAAAGGATATGGTTTTGTTTCTCGTAAG 1903 36 100.0 37 .................................... TGCTCATTTAGATGAATTTCTATTTTGTCTTTAGACA 1977 36 100.0 39 .................................... TTCTTTGTATCGGGCTTGTGCCTCAGTTGCAGAAGCGAT 2053 36 100.0 38 .................................... CTCATTGGTTGGCTTCTGCTTAAGAAGTTTCTGCCCAG 2128 36 88.9 40 ........AA.G.........T.............. TTCCCTTTTACAATATGGACAGGCAAAATTGCATCTCCCA 2205 36 88.9 40 ........AA.G......T................. TCTCGAACATAGGTTCGGTAGGTCTTTATCCTATGCCACT 2282 36 88.9 40 ........AA.G....T................... TCTTGAGGGTGCTGACACTTCTTGTTAGTATTTCAACCTC 2359 36 88.9 0 .......TAA.G........................ | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 97.5 39 GTTGCATACTGAATCTCACTACTAGAGAATTGAAAT # Left flank : GTAAAAAAAGAGCAGAAACTATTGGAATTGGGCATAAAAAGAAATTTATTGAGTTCAGAAAATGTCTTGACTGAAAAAAGTATGTCAACCTTCAACCAATGAATTTGCATATCTTTATAAAGGATTTTCAAATCGAAGATATGCAATAAAAGAGAAAATAAGAACGAGTCTAATAGAGAAAAACGCAAGAAATTGGCTCG # Right flank : TTAATAATCGATTAATTTCATAAATTATATACAAAATGAGATGTTGGATAATTCTATGATTCTCATTTATCAAATGACTCCTATTATCTAAAATTCTATCTCACAATTTTCTTGAAAAAATGAATTTATCTTCCATTAGTAGAAGATACTTATTTTCTTTTTATAAGGCTTAAAATCAAACTATTCTCTATATTTAGCTA # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:1, 7:0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATACTGAATCTCACTACTAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 762-36 **** Predicted by CRISPRDetect 2.3 *** >lcl|10H_NODE_57336_length_928_cov_1.380774- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 762 36 83.3 41 ..AAT................G..........C.G. TTAGGTCTCCAACTCATCTTTTACCTCCTTTGATTTCCATC G [752] 684 36 91.7 36 ..AA.................A.............. TTTTACTCCTTTGTCTCGCCTGGTAGTGGTGTTACT G [676] 611 36 80.6 40 TGG......GC..........G...........G.. TCAATCAACTTCTCAATAGCCTTACAGAGTGCTAGGGCTG G,A [598,606] 533 36 86.1 40 ..AA.................A..........C..T TCCACTCCACCACTTCCCTTATCCCTGCCCTGAAAGAGAG A [523] 456 36 91.7 36 ..A....G.............A.............. CCTATTCAGTTTTTAATGTTCTGCTACACTTACTAA 379 36 100.0 38 .................................... TTGCCTAGCAGTTCAGGTATTGGATGTTTGGCTATCGT C [367] 303 36 100.0 42 .................................... ATTGTTTCCTCCTTTATTCAGGGTGAGGGCTGGTAGTTTAGC 224 36 100.0 38 .................................... TTCTTGATTGGATGCCAAACCACATACTCGCTCCCACT 149 36 100.0 40 .................................... ATTTAGTTACACCTCAAAGGATTTGCTCCTTAACTTTCAT 72 36 97.2 0 .....................C.............. | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 93.1 39 GTCGGAAAGAACTAATCCTCGTAAGGGGATTGAAAC # Left flank : AGCAACTGAAAACTATTAATGCCCTCGCTGATTTTGCTTTTTACTCTGGAATTGGTGCTAAAACTACTATGGGAATGGGACAGGCAAGGAGGACAAGATTTGGGAGTGCTATATCTAACAGAGCAAGGGGCAACTCTGAGGAAGGAGGGTGACCTCTTTATCATAG # Right flank : CGTTGACAAGTAGTGGTCTATGTCCTGTAAAATAGA # Questionable array : NO Score: 6.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:1, 7:0.48, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGAACTAATCCTCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 370-31 **** Predicted by CRISPRDetect 2.3 *** >lcl|13H_NODE_73095_length_434_cov_1.394137- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 370 37 86.5 38 TGAAC................................ AGCTTTTAAGTTAGTCGCTTCAGCTTCAGCCTTGACCT 295 37 100.0 42 ..................................... TAAGAACAGAAGATATGTCCATGACTATGTGAAGTAGCATAG 216 37 100.0 36 ..................................... CATATAGCAGGATTGCGTATTTAATTTTCTCTCTTA 143 37 97.3 38 .........G........................... TGCTCTGTCAGCCCTGTGCCTTGGAAGTCGCCCCTAGT 68 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.2 39 GTCGGAAAGAAACTAATCCTCGAAAGGGGATTGAAAC # Left flank : GGGGTAGTGAAAATTGAGGTAACACCTTTGTGAGCCAAAAGGCTTAAAAGAAGCACCTTAACAA # Right flank : CTCAATCCTCATACTAACCTGCTGGCGTGGC # Questionable array : NO Score: 7.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:1, 7:0.68, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGAAACTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : GTCGGAAAGGAACTAATCCTCGAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 1-360 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_196971_length_497_cov_1.337838- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 1 27 100.0 39 ........................... GAAAGAGAACTAGAAAGAGATGAGAAAGAACGGGAAGTA 67 27 100.0 40 ........................... GGTATGTCTGTACATAATGTACTTGTCTTGAGATCCGGTA 134 27 100.0 39 ........................... AGACTAGAAACAATCAAAATTAATAAAAGTACTAAAGTA 200 27 100.0 40 ........................... AGATTCATTTGGTCAAAATTAACAACTGTTGAAGTGTGTA 267 27 100.0 39 ........................... GAAGTCAATATAAACTGTTTCAAAAGGCATTGAAGGGTA 333 27 85.2 0 ...C........C.C.........T.. | ========== ====== ====== ====== =========================== ======================================== ================== 6 27 97.5 40 TAAATCAGACCATTATGGGATTGAAAT # Left flank : | # Right flank : ATACTCATATTGATAATAAAGGACATGTCCTAATTACTTAATCTCTCTGAAAATGTAACTTCATAACTACAAATAAGTGTGAATCTGTAATATCTTGGAAATTACTATTTCTAAAATTATATCTCTTCCAGATATGT # Questionable array : NO Score: 9.50 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.28, 7:0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 896-2 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_27208_length_952_cov_3.261818- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 896 30 100.0 36 .............................. TATCCAAACCATAAATCACATCTTTTACAGTATAAC 830 30 100.0 36 .............................. GAAGATTTCGTAACTGCAATGGGGAAACAAGGATGG 764 30 100.0 37 .............................. GAGAAATGAAAGGGAAAGAAAAGATGATCTCAAAGAT 697 30 100.0 36 .............................. GGAGATTCTTACATAGCAGAATTTATGCAGAGAGAC G [695] 630 30 100.0 36 .............................. ACATAATGAATTTTCATTTCTTCAAGAACTTTTACT 564 30 100.0 36 .............................. TCAAATCTCAGTTCTAATCCAGTCCACCCTGGTTCA 498 30 100.0 38 .............................. GATTTAAGTGGTTTTGACAATATCGACAACGCAGGAAT 430 30 100.0 35 .............................. GATAAGAATTGACTTGGGTACTAGCAGAAATGCGG 364 30 100.0 36 .............................. ACTAAAGTATTCGATTATGCAGCTAGTAATACTCAT 298 30 100.0 36 .............................. TATTAACTGTAAAGACTTGGTGAACGTCTATTATCT G [295] 231 30 100.0 37 .............................. TCAGACGATTACTTCAATCTCTATTGTACTAGTAATT 164 30 100.0 36 .............................. GCTGTAGCTAGTTGTTCTTCAGTAGGGATAAAGAGT 98 30 100.0 36 .............................. GTGTATTTATGTATGCATAGGTATTTTCAATTGCTT 32 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CGTTTTTTAATTGTAGAAACAAGAAAATAATAGAAAAAAACACATGAAAATCGCCG # Right flank : TG # Questionable array : NO Score: 10.97 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.98, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 60-489 **** Predicted by CRISPRDetect 2.3 *** >lcl|17H_NODE_32633_length_503_cov_3.010638- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60 30 100.0 36 .............................. GTGTATTTATGTATGCATAGGTATTTTCAATTGCTT 126 30 100.0 36 .............................. GTAAAACTCCAAATTGGTGTATAAGCTGATATTATA 192 30 100.0 37 .............................. CAAAGAGTTCCTTAACTGAAGGAGGGATATTAGATGA 259 30 100.0 37 .............................. CTACCAGAACCATCAGGAATAGTAGAATTTGTATAGG 326 30 100.0 36 .............................. ATGAAAAAACTATGTTATGATCTTGAAGGTAAACGT 392 30 100.0 37 .............................. TCAGTTACTGCTTCCGTATCATAATATTGTCTAAACT 459 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CTCTTTCCCTACACGACGCTCTTCCGATCTCTAGTTGTTCTTCAGTAGGGATAAAGAGTG # Right flank : CTGTAGATTATGAT # Questionable array : NO Score: 11.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 50-465 **** Predicted by CRISPRDetect 2.3 *** >lcl|28H_NODE_159305_length_515_cov_2.237113- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 50 36 91.9 38 ...........-G.........C.............. ACCTTCTTCCAGTTCTGTTTGAGCATGTCCTGTTGAGT C [59] 125 37 100.0 39 ..................................... GTAGCGAATCGTCTTATCCATGATGACAGACTCCCACTC 201 37 91.9 39 .........CAG......................... TTTTATCCTCCCTCTTACTATAGTTTGCTCTAGTAATCA 277 37 100.0 38 ..................................... CTTATCTCTTCTTGTTTAGTCATAAACACCTCCTTCTC 352 37 100.0 39 ..................................... TTCAGGTACTATGGCTTTAGTCCATTTGCCCACAAACTT 428 37 94.6 0 ...C......A.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.4 39 GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Left flank : GACTGGGAATCACCCCCTCGAAAAACCTGTTTATCTTCAGATAGGCGGTG # Right flank : CATAGCCCCAGATATGAACGAAGCCTATCTCGTAGATGTCAGAAAGAACC # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:1, 7:0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 365-34 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_207353_length_415_cov_0.861111- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 365 37 100.0 36 ..................................... AAGAGATTTGGATGTTCTTTCTCTTCGACATATAAT 292 37 100.0 37 ..................................... TCTTTTTTAGAACTTTTTAGATCACTAATGCTTCTGA 218 37 100.0 37 ..................................... CTATGCTTAGAGAGGGCAAAAGATTTATTGCTTATAC 144 37 100.0 36 ..................................... ATTTATTAGAGCAATTACACAGGGCAAGCTCTTTAT 71 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAGAAGATTGAAACTATTTTACTTGCTTTTTGGCTTCAGTAGACCATTGT # Right flank : CTAAATATATCTGGCCATTTTAATTCGGCTAATC # Questionable array : NO Score: 7.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 393-61 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_291050_length_394_cov_1.857678- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 393 37 100.0 39 ..................................... AGGAAAAAAAGAGTAATTAATTAATTTTTATTTTTTTTA 317 37 100.0 37 ..................................... TATAATTCATCTTTTGCGTCGTAAATTTCTTCTAACT 243 37 100.0 35 ..................................... TAAGTTCATCAGACCTCGTTTCTTAGGCTGTTCAC 171 37 100.0 36 ..................................... TCAGGCTCTATTATCTCAATATCCTTTAACACATCA 98 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 37 GTTGCAATAAACATAGCTTCAAAAAGAAGATTGAAAC # Left flank : C # Right flank : CAGGAAAAAAAGAGTAATTAATTAATTTTTATTTTTTTTAGTTGCAATAAACATAGCTTCA # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.93, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAACATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 333-69 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_339160_length_379_cov_0.984127- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 333 41 100.0 33 ......................................... TCATAAAATTCTTTCGGTGGACTTTTATAGGGT 259 41 100.0 34 ......................................... TAATACTATTAATACCAATTCTCCGACGATCATT 184 41 100.0 33 ......................................... ATTTTACTTCCCTTAAGCTCTAGTTTCAATTGA 110 41 95.1 0 ..TT..................................... | ========== ====== ====== ====== ========================================= ================================== ================== 4 41 98.8 34 TTAAGTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AAGAAGATTGAAACTTCATTTTCTGGGGTGAGTTCCCTTTTTTTTT # Right flank : CTTATTAATTTCAAATGGTATCGTTCCGAGTAGATCAGGTTGCATTAAATATAGCTTCAAAAAGAAGAT # Questionable array : NO Score: 6.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.65, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAGTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 8-345 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_377297_length_413_cov_0.867133- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 37 ..................................... AGACAGTGATTTACGACGATTGTGTTTCCATTTTCTT 82 37 100.0 36 ..................................... TTCTATTAAACCCTGGTTTAAATTAGATTTGTAACC 155 37 100.0 39 ..................................... TTCTTTGTCTTCGTTGATTCTTCCGTTCACGCTTCTTTC 231 37 100.0 40 ..................................... ATGATATCGTCCGCCATTTTTTCGACTTCAGAAATTTCTT 308 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : ATAACTAG # Right flank : CCTCTGCTAAGTCCATTGTTTTGTTATTTATGATATGTTGCAATAAATATAGCTTCAAAAAGAAGATT # Questionable array : NO Score: 7.57 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.77, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 53-388 **** Predicted by CRISPRDetect 2.3 *** >lcl|2H_NODE_388704_length_422_cov_0.840678- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 53 38 100.0 37 ...................................... AATAAGAAAGAGCTTCATCAAAAGAACAGGGATCATC 128 38 97.4 35 C..................................... GAGGATTATATCTTTTCATTTCTATCATATATAAA 201 38 100.0 36 ...................................... AAATAGTAAGTTTTCTTTCTCTTTATTTCTCTTTTC 275 38 100.0 37 ...................................... CTGGCGTAAAATCTTTATTATTTCTTCTTTAATTTCC 350 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 99.5 36 AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TCAGTAAATATTAAATAGTCGTTCTTTTTAATATATAATATAAAATAATAAGA # Right flank : CTCCCTTACCGGAAGCTGACCAGTAACTGCCTTG # Questionable array : NO Score: 7.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:1.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 54-399 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_100534_length_1597_cov_2.487075- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 54 38 100.0 39 ...................................... CTCTTTCATGTGGCCTCTACCTGTCTGAGTGATCACTAC 131 38 100.0 40 ...................................... GTATAGAAAACAAGAAATATAATAAAAATGCATTGAATGC 209 38 97.4 38 .....................................T AAAGGCATTGAATTTGTAACCAATTCAAATAAATCTTT 285 38 94.7 38 ......T..G............................ ACTTCAACAATTGTTTTTTCATTACCATCTGTTGGTAA 361 38 94.7 0 ......T..G............................ | Deletion [398] ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 97.4 39 GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAACA # Left flank : CTAGTAAATGCAACTCAAAACGTTGTTGCATTATTTCTGATCCTGTTAATTCCG # Right flank : GGAATATACTAAAATTGCATTAAATGCAACCCTGTGCTGTCGTTTGCTGTCGTTCAGCTTTTAAACCTTTGTTACTTTACGTCTTAACCCCCCATCTTTTTTCTATTATTGGTTAAGTAATTTCAGTGATTTTTTCTTCGAGGGAAAGAGACTTGAGACGAGAGTTTTTTATTGTTGGGTAATTATTGGCAGGGGAAGAG # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.29, 7:0.48, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAACA # Alternate repeat : GTTACATTTGATGAATCAGTAAGCTAGTAAATGCAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 49-377 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_105501_length_393_cov_0.928571- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 49 37 100.0 36 ..................................... TTTGTAAGCCTCCTTTTCCATTCTTGCTACCTTCTG 122 37 100.0 36 ..................................... AGTTGCCTGTAATAAGACGTTTCAATTCTTTGTCTG 195 37 100.0 35 ..................................... GAATAGAAGAAAACATAAATAAATTAACTTAAAAA 267 37 100.0 36 ..................................... TTATCGAATTCGTTTTCAATCGCTGTTACCACTTTT 340 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : GATTGAAACCTAGAATCGCCATTTTCCCAAGCGTTTGCTGATATTTATG # Right flank : TTGATGACATTTTTTT # Questionable array : NO Score: 8.04 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.24, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 12-420 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_234101_length_474_cov_2.144092- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 37 ..................................... TTGATTTAGTGTACACAATGCTGGTACGTACCTTTTG 86 37 100.0 37 ..................................... AATTTTCTGTTTCTGTTCTGGTTTCCGATAATATTAC 160 37 100.0 36 ..................................... TCCATCGTCCGAGTATTTATAATGTCCAAAATTCCA 233 37 100.0 37 ..................................... AAATAAAAAATTTTTTGTTTGATGAAGAATTATATAG 307 37 100.0 39 ..................................... TTATTTCTATTACTTCTTTATCTTTCATTTATTATTTCA 383 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TCCCTTTATTTG # Right flank : CTGATTTAATGCTTGCTCCTCCTGAGCTTTTTTTTTGTTGCATTAAATATAGCT # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 29-438 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_261805_length_465_cov_0.733728- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 29 37 100.0 36 ..................................... GTAAATAATCCATAGGATCGGAGACTCCACGTTCTT 102 37 100.0 38 ..................................... TGAGAATACCCACTCGTAAATGGATGGAATTGATTCCT 177 37 100.0 37 ..................................... TAATCGGTTTAATACTGTTTGCTATAATAATAACTCC 251 37 100.0 38 ..................................... TTGCCTTTCCAAACGATTTGCTGAACCACTTTCCAATT 326 37 100.0 38 ..................................... GATGCCAGTTTCACCATTCCAATCTAACAAAAGAATAC 401 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 38 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TAGATCGTCGTCCCTCTTTTTAATAAAAG # Right flank : TAGGATTTTTTGCCTTTAAGTCATCAT # Questionable array : NO Score: 7.79 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 63-395 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_324541_length_399_cov_0.911765- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 63 37 100.0 37 ..................................... TGCTAAATCTCCGAACTCAGCAATAAGTGGACCTAAC 137 37 100.0 37 ..................................... GTGTTAATTTCTCACTCCCGCCAGGAGAAACACTTTT 211 37 100.0 37 ..................................... GCATATAAATGCTTCCTTCTTCATATCCGATGGCTTT 285 37 100.0 36 ..................................... TTTTTCATGTTTACATTTTCTTTGCACATTTATCTC 358 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TATAGCTTCAAAAAGAAGATTGAAACTTCCTTATGGTATAGGTCGTGATATAGATTGAGACCG # Right flank : CTAT # Questionable array : NO Score: 7.92 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 437-206 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_400735_length_449_cov_1.105590- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 437 30 100.0 36 .............................. TGGGAAACTCTTACGACACAATCTGCGCATTGTTTT 371 30 100.0 36 .............................. GGTATAAGTTTTCTAACTCTTCCTTTACTTTTTCTT 305 30 100.0 36 .............................. ATTTCTTGCATAGATTTAGCAAGTTCTGCTATAGCA 239 30 90.0 0 .........................T.T.C | TCT [214] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CGATCTAATAAC # Right flank : CGTTATTAGAGTTGTGCACATGGTTTTGAAATAGGGATTTCAATCCCATAATGGTCTGATTTATACACCTCTGGAGAAGTTTATTCGATTGTTGCGTCTTTGGCTTTCACTCCTGCAATTGTCTGATTTGTAGTTTTCTGCACTCATTCTGTATCGCAAACTCTATTTTGTTGCTGTCCCATAATGGTCTGATTTATACA # Questionable array : NO Score: 10.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.99, 7:1.51, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 258-74 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_538138_length_422_cov_1.681356- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 258 37 100.0 37 ..................................... TAATTGCTAAATGCTGATATACAAAATAGTCATTTTG 184 37 100.0 36 ..................................... GATCGACGTTGAATGAGTGACGAGAAAAGTTTTTAA 111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TACATCAAAAAATGCTATGATCTTATTATGTGCGGAAGAATTTTACGGGTAAAATTATACATTTGGATAATTAGATAGAGAATTTACTATTATTGGACAAAATCAAGTGAAATCAGTAAATATTAAATAGTCGTTCTTTTTAATATATAATATAAAATAATAAG # Right flank : CATTTTAATTTTTTTAGGATGAAGCTTAATCTATCCACTTCAGTTGCAATAAATATAGCTTCAAAAAGAAGATT # Questionable array : NO Score: 8.19 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:1.79, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 39-765 **** Predicted by CRISPRDetect 2.3 *** >lcl|3H_NODE_92933_length_821_cov_1.749280- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 39 37 100.0 39 ..................................... ATAACAATCTCTCCTTCCCTAACACTGACATTTTCTTTT 115 37 100.0 40 ..................................... TCATCATGTCTTTATGTAATTCTAAACGTGCTAAAGCAGT 192 37 100.0 39 ..................................... ATTGAAAAGAAGCCAACAAGAGCAAAACGAGAAGTTCGA 268 37 100.0 38 ..................................... AAACGGAATATATGAAGGGTTAGAAGAGTTTAAAGCCT 343 37 100.0 42 ..................................... TACAAGCGAATAAAAATCGAAGCTATAAATGCTGATCTTGGA 422 37 100.0 40 ..................................... CAAACTAAACAACATTCTTCTTTTAATCCTCTATCGATTT 499 37 100.0 39 ..................................... TTATTATCTATATACATTGGTAAGATGTGTTCATAACAA 575 37 100.0 39 ..................................... TGCTCTGCACTTAATAGTTGCGGGAATATATCTAATCCA 651 37 100.0 40 ..................................... TGTCAAACATTTTCTTTCACCAGGTATAAGTTTTCTAACT 728 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : CCAATATATGCTTTTTCTAACGCTACTGAACAATTAGAG # Right flank : TCTTTATTACGCCCATAATTCTCAACATGTTACACCTGTTACAACTAGTATCTCAA # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 15-356 **** Predicted by CRISPRDetect 2.3 *** >lcl|40H_NODE_127092_length_394_cov_0.835206- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 100.0 36 ..................................... GCAAACTCTGGTCAGGGTCTAACTGGACATAGCCGA 88 36 94.6 44 ..........A..........-............... TGAATTTCGCCTGCCAGCCGTTTCACCAGTGCCATATCCTTTGC G [113] 169 37 97.3 38 ..........A.......................... CCATAGCCCCAGATATGAACGAAGCCTATCTCGTAGAT 244 37 100.0 38 ..................................... TTGATTGCTTCGTCTATGGTCATCTTCCCCTCCTTCCG 319 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 98.4 39 GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Left flank : ATACTTCACCTCCCG # Right flank : CTTTACCTGTCCTAGTTATCTAGGAGACGGCGATAATG # Questionable array : NO Score: 7.39 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:1, 7:0.67, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGAGCCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 121-376 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_266008_length_398_cov_2.129151- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================================== ================== 121 27 96.3 48 .......................G... TCACCGTCCTTACTTTCCTTTATGTTTTTCATCTTCATGTCGGAAAGA 196 27 96.3 48 .......................G... ATTACCGTGTCTTTCGCTTCCATATTGCCCTCCTTTTTGTCGGGAAGC 271 27 100.0 51 ........................... CTTAGGTACCGCCCGTAGGCTTCATCGAATTCTGGAGTTGCGTCGGAAAAA 349 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =================================================== ================== 4 27 98.2 49 ACCTAATCCTCGAAAGGGGATTGAAAC # Left flank : CTGTGTAACCCCCTCGCTATCTGCACCTTAACAATAGAATAGTTATCAGCCCGATAGAGGACACAAACGAAAACCCGCTCGGAAAATATATTCAGAAAACAAAGCTGGTTGTCGGAAAGAA # Right flank : CTTGCCCCCAAATCCAGGCGAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.28, 7:-0.13, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : ACCTAATCCTCGAAAGGGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 3627-2910 **** Predicted by CRISPRDetect 2.3 *** >lcl|6H_NODE_76352_length_3687_cov_3.598315- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================== ================== 3627 31 96.8 43 ................G.............. TTTCTTCTCCTCTGGCATCTCGCCCCGCTTTAAGGCTTGTCGG C [3619] 3552 31 96.8 45 ................G.............. CCTCTCCAATTCACTCTAATTCCTCTAGAGTCAGCGGAATGTCGG C [3544] 3475 31 100.0 43 ............................... TTTCTCTAACCTCTCTTTGAGGAAGGCTTGCCATACCCGTCGG C [3467] 3400 31 96.8 42 .......C....................... TCGGTAAATCGAATATCATTGGGGAAGTCAGTGCATGTAAGA C [3391] 3326 31 90.3 45 ..G..G..........G.............. AGTATCTCAATGGCTTTGTCTATGGTCATTTTTCACCTCGTCGGA 3250 31 100.0 45 ............................... AAGTCTGTCCAGTTCAGCCCATAGTCTGTTGAGCGAAAAAGTAGG 3174 31 100.0 44 ............................... GTGTTGCCGTTGGTTGTGTAAAATATACCTACCTTACAAGTCGG A [3167] 3098 31 100.0 43 ............................... CAGCCACACTTGTCGGCTATTATGGAGAGGATTTCTTGTAGGA A [3091] 3023 31 90.3 51 ..G..G...........G............. TTTAGTAATTCTGGATTCTCGTAGATGTTGCCTATGACTTCGCTCGTTGGA 2941 31 96.8 0 .....G......................... | ========== ====== ====== ====== =============================== =================================================== ================== 10 31 96.8 45 AAAGAACTAATCCTCGAAAGGGGATTGAAAC # Left flank : AGGGGATTGAAACCCTTGCCCCCCAATCCAGGCGACTGCACCCAACAAGATCACTTGTCG # Right flank : CTCGCCCGAGGTCGTTGCTGTAGCTCGCCAAGCGTGCGCATAGTTAGGAAGGTCGTTGGTTCCTGAAAGAGACAAGAGCGAACACAACAAACCGACGAATTGTGCAGTTTTCTAGCTACCTTCAAGCAACAACTAATAACCCCTATTTACAACAATTAGCAAGGCGAGTGGATAAGAATCAACAAAACGCTATAATATCT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.34, 7:0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGAACTAATCCTCGAAAGGGGATTGAAAC # Alternate repeat : AAAGAACTAATCCTCGGAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 1220-501 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_103292_length_1276_cov_3.725849- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1220 37 100.0 39 ..................................... TTGATACCGAAACTTATAGAGGGCAAGCCTATTTAATGA 1144 37 100.0 39 ..................................... TCCTTAAAATCTCATCAGACAAGATTGAGTCAAAGTTGA 1068 37 100.0 40 ..................................... TCTCCTTTCCTTAGCGCCTATTCCATTTTCATTATTAGGT 991 37 97.3 38 .....................T............... AATAGGTATAAGGTTTTAAACCAAATTTGGTATTGAAT 916 37 100.0 37 ..................................... ACGATCTATCTGCTAGAACCACTTCATAGTCGTACCA 842 37 100.0 41 ..................................... TGCTCTTTTGTCTGCAGCTGCAAGTGCAGCCGTCGCAGGGC 763 37 100.0 37 ..................................... TTTTTTAAGACTAGTATAATTAAAAAGTTTTGAAAAA 689 37 100.0 38 ..................................... TATTTTATCGTCCAAAGAACGACGAACAGCCTCTGCTC 614 37 97.3 39 ..........A.......................... TTGACAGATTCATCAAAAGAGACAGAAACAGTAATAGTA 538 37 94.6 0 ....................GT............... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 98.9 39 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : GATCTGTGAGAATTGAAATTAGACAGCCAAATATTAATATTCCAAATATCGAACAG # Right flank : GAAACAATTCCATCAACTACGATTAGATGGTATTCCTAAAGGACTGGGAAATACACTTGCATCACTTACAAACAAATTAGTTATTTTAGTCTCCTGATTATCATCTACTACTTTTCCTATTGGAGCTGTACAACAAGGATGACCTGATTCATACACTCCCCTAGTTATTGTCTCTGGTTTTGCTCCTGAAGCTAGCAGTA # Questionable array : NO Score: 7.42 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 672-265 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_108869_length_813_cov_1.303207- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 672 37 100.0 35 ..................................... AAATACATTATAGGTTCTTTATTCCGACCAGGAGT 600 37 100.0 37 ..................................... TTCAAACAAAGAGACATCACTGCTATTGATGTACAAA 526 37 100.0 35 ..................................... TCAACCTTTTGATTTTTTTATTTTTTTTCTATTAA 454 37 100.0 40 ..................................... TTTTCCAAGATTTTGGTTCCTTCAACGTTCAAAAATACAA 377 37 100.0 38 ..................................... TTATTTTTCGCATTTTGTCACCTAATATCGTTTTATTA 302 36 94.6 0 ......-.A............................ | A [291] ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.1 37 GTTGCAATGAACATAGCTTCAGAAAGAAGATTGAAAC # Left flank : TTAAAGACTTGATTCAAGATTAATTTAAATTAAAGATTCGTCTAACGACTCTTTTTCTAAAGAAAACTTGACCCTACATATTTTTCCTAAAAAAAAGAATAAAGATTATATACTCGAAGTTTCTTATTATATAAATATAAG # Right flank : TAATCAATTAACTAAATCAACGTTTCTTTTCAAAAAGGAATTATAAAATTATGTCATAAATTATCTAAAATTAGGAAGGAGTAAATCTTCATAATTAATTTCTATTCCACAATACTCACATTTATTTTGCCCTATCTTTAAAATCTGATTATTACAGAATTGGCATTCAGAGAATTGTGTTAATAGATGATTAATTTTTC # Questionable array : NO Score: 7.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAGAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 4338-4758 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_120241_length_15392_cov_5.856993- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4338 37 100.0 39 ..................................... TCAAAACATTGTTGCATTATTTCTGATCCTGTTAATTCC 4414 37 100.0 40 ..................................... ACTCTTTCATGTGGCCTCTACCTGTCTGAGTGATCACTAC 4491 37 100.0 41 ..................................... AGTATAGAAAACAAGAAATATAATAAAAATGCATTGAATGC 4569 37 100.0 39 ..................................... TAAAGGCATTGAATTTGTAACCAATTCAAATAAATCTTT 4645 37 94.6 39 ......T..G........................... AACTTCAACAATTGTTTTTTCATTACCATCTGTTGGTAA 4721 37 94.6 0 ......T..G........................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 98.2 40 GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAAC # Left flank : TCTGATCCTTACCAGGTTGTTGGAAATTTCTAATAATGAAAATCTTAAATTTCTTTACAGGGATATATCTATTTCTAAATTAGAGCCAATTTAATCTTTCGTTAATCTTTCGTTTCAGATGTATTTTTTTGTATGTTGGTTATCATAAACTTATCAAAATGCACTTTTTCTTCCGTTAGTACCACTGTGCGTACAACGGT # Right flank : AGGAATATACTAAAATTGCATTAAATGCAACCCTGTGCTGTCGTTTGCTGTCGTTCAGCTTTTAAACCTTTGTTACTTTACGTCTTAACCCCCCATCTTTTTTCTATTATTGGTTAAGTAATTTCAGTGATTTTTTCTTCGAGGGAAAGAGACTTGAGACGAGAGTTTTTTATTGTTGGGTAATTATTGGCAGGGGAAGA # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:1, 7:0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAATGAATCAGTAAGCTAGTAAATGCAAC # Alternate repeat : GTTACATTTGATGAATCAGTAAGCTAGTAAATGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 53-389 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_134667_length_427_cov_0.823333- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 53 37 100.0 37 ..................................... TTTCAAAGCTTCTTTGTCCAGATAGACACATAGTCTT 127 37 100.0 38 ..................................... AAAAATTATTTATATTTATAATTTTTTGTTTTCTCCAC 202 37 100.0 40 ..................................... TGTGAAGATATTTTTTAGTTAGGGAGAATAAATATGACAA 279 37 100.0 36 ..................................... AAAAAAAAGAAGAGTTTAAATAAATTCTGATTTTAA 352 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GTTGCAATGAACATAGCTTCAACAAGAAGATTGAAAC # Left flank : CAAGAAGATTGAAACTTTAAATCCTTTTTTTCCTTCTGTCCATAGATTTAATG # Right flank : ACAACAAGGTTCTTCAATGTTCATATTAATATTCACAG # Questionable array : NO Score: 7.62 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.82, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAACAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 23-356 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_137676_length_416_cov_0.858131- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 100.0 36 ..................................... ATGCTATGAATAACGCTAAGCCTATAAAGAAGAATG 96 37 100.0 39 ..................................... TTTTGGACCCCTCATTACTTATTTTTTATAAAATGAATT 172 37 100.0 36 ..................................... GAAATTTAGGTGATCGTTGTAGATATCAAAAATTTT 245 37 100.0 37 ..................................... TTTTTCGGTTAAATTAATTTATTAAAAATACTCATCA 319 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TGGTTCGTAAAAATCCATATTAG # Right flank : TCTTTTAATCTGACCAAAAATTCATCTAAATCTTTTGTCAGCTCTCTGAGACTCTGAATT # Questionable array : NO Score: 7.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:1.03, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 7-197 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_155080_length_407_cov_0.885714- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 38 ..................................... GTTGGTTATGTCAAAATAATAAATGTTTGCATTTTATT 82 37 100.0 41 ..................................... TAGCATCAATTTGTGTTCCGAGCGATCCGTTTGCTCCTGCA 160 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 99.1 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : ATCAACG # Right flank : TTATCTATGAAAAAAACAGCTGTGTAGCTCAAAAATAGAAATAATCCAAATTTTCTTCTATCAGAAAAGTTCAAAATCTCTAGAAATCAATTTATTTGTTAATTCTTGTTAGATTCCTAAAATCTTGATATTTTCTGTTTTTCTTATAGTAATTATAGTTTTTTCTAGTAGAAGAAACTCTTCTTATACTTCTGAGAAAT # Questionable array : NO Score: 6.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:1, 7:0.61, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 37-369 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_156822_length_379_cov_0.984127- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 37 38 100.0 36 ...................................... AAAAACAAACTGGCTTTGAGTGCGTAATTGCATCTG 111 38 100.0 36 ...................................... GTTATTAATTCATATATAATTATGTATACCATTCCA 185 38 100.0 35 ...................................... TCTTTAAAGGAACGAATCAGACTTGCGTCCTTAAC 258 38 100.0 35 ...................................... TTTTTTTTTCTTTTTTATTCATTTTCTTTCCTCTT 331 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.5 36 AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : TATATTCATTAAGACTTTCTATGTAACATACCTTTAA # Right flank : TTGACAAGAT # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.29, 7:1.14, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 404-65 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_182821_length_445_cov_1.559748- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 404 37 100.0 38 ..................................... ATAAACTATTTCAAACTCTTTCTTTTTTGGTATTGTTT 329 37 100.0 39 ..................................... ATATCATATAGAAGTCTGAAAGAAAATCTATCATTTTCT 253 37 100.0 38 ..................................... TTGGATGGTAGACTAAGATATATTTATCGTTGTTTATA 178 37 100.0 39 ..................................... TGCTGTTTTGTGGAGCTTCTCTCAAGCTCATCTTTTTTA 102 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 39 GTTACAATTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : ATGAAAAAGAAGGAAAAAGGGTATTTATTGTAAGCCCTCTG # Right flank : TTATCATAGTTTTTGTTGTTGATATTATCGAGCATATCATAAGTTACAACTAGTATCTCAATGTA # Questionable array : NO Score: 7.31 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.51, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 65-409 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_208511_length_434_cov_2.785016- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 65 37 100.0 38 ..................................... AGCCTTTATCTCTCTCTCGTATATACTCTCTTTTCTTA 140 37 100.0 42 ..................................... GATGATATAACAGTTCCAGGTTGGGTGGAAGAGATTATCGCA 219 37 100.0 39 ..................................... TATCTACGTTGTTAGAACAGGAGAATTTACTGTTGCAGA 295 37 100.0 40 ..................................... CAGTAGTACTTGGTTCTATATTAGAATTAATTCTCATATC 372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TCTCAATGTAGTGAGAATTGAAATCAGTAGTACTTGGTTCTATATTAGAATTAATTCTCATATCG # Right flank : GCCTTTATCTCTCTCTCGTATATAC # Questionable array : NO Score: 7.16 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.36, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 550-45 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_209214_length_572_cov_1.950562- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 550 30 100.0 37 .............................. TGCAAATTGCTACAACTGTGATATACATGTAATCTGA 483 30 100.0 36 .............................. TTGTTTATCTTTCCAAATGTCATACCAAGACATGAT 417 30 100.0 43 .............................. ATATAAAGTTGATCACAAAGAGAGGTAACCGGGTTATATTATC 344 30 100.0 37 .............................. GTAACTGTAGAAATTGAACTGTCGTGAGCATTACCGT 277 30 100.0 38 .............................. TCTTCAGTTGATAAGGCACTTGTTGTTGCACTAAAACA 209 30 100.0 37 .............................. CACTATGAAAAGAATATACCTTTTCTCCTACAAAAAA 142 30 100.0 37 .............................. GAAGCTAATACATCAAAGAGTTCAAGAACAAAGTCTT 75 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 8 30 100.0 38 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : CATATTCTGTTTCTCTTATCTG # Right flank : TAAGATTACAATATTGTTATAATAGATGATGCTATAGAGTATAAA # Questionable array : NO Score: 10.77 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 17-514 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_237278_length_534_cov_1.186732- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 40 ..................................... CACATACACTACCGCACGCAAAACGCTGATGCAGTAGGTG 94 37 100.0 41 ..................................... GGTTATCAAACAGAATATTGGGTTTGTAATCGCACTTTTTA 172 37 100.0 39 ..................................... TGATACGTTATTCTTAACATCTCTATTCCCGTTAACACT 248 37 97.3 39 ................................A.... GATGGCGCTACAGGAGTTAAATTTTCAATAGCAGATTTT 324 37 100.0 40 ..................................... CTTATTGCTATTTTCCTCCCGTTATACAATGTAAGACAAT 401 37 100.0 39 ..................................... TTCTTTAAATCTAATCCAACTCTAGTTCGTGCTTTTCCA 477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 99.6 40 GTTACAATTAGTATCTCAACATAGTGAGAATTGAAAT # Left flank : TCATAAACGATAGGTGG # Right flank : AACCAGCAAAAGATATACCA # Questionable array : NO Score: 7.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAGTATCTCAACATAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 627-54 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_24002_length_859_cov_2.021858- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 627 37 100.0 41 ..................................... TGAATAATTGGTATTCTTTTTATCAACAAGGTTTTTGTTAA 549 37 100.0 40 ..................................... GATATCAAAGAAGTGCTAGTAAGTGCATCAGCTGCATCTA 472 37 100.0 40 ..................................... TGTAAGTCAAAAGTCACAACAGCATAAGCATTGTGCCTGT 395 37 100.0 39 ..................................... AATATAGCGGCTTCGCCCGCGTCATCTGCTGCTACGCTC 319 37 100.0 39 ..................................... TTAAGAGTTGAAGTATCAATTTCTATTAACGCTTCTGGT 243 37 100.0 39 ..................................... GAAAGATAAGGTCGGAGAGCTAATTTGTGGCTTTCATCA 167 37 100.0 39 ..................................... CGATATTTTCACTGCAACAGCCACTTACGACTATTATGT 91 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TGAAGAAAAAGGAAAATGTGCAGATTGTGAGTATAAAAGAATATGTAAACCATTATAAGAAACATAGAGAGAAAACTAATAAAGGAAAAGAAAAACTGTATTTTTGAATGAGTATATAAAGAACTCAACAACTTTGTGTGATTCAAGAAAAAAGAAAATTAAAAAGCGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : TTCTTGTAAATTCCAATCGTTTTGATAAGTTCCTCCTTCAGTTACAACTAGTAT # Questionable array : NO Score: 7.30 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 343-11 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_258063_length_400_cov_1.695971- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 343 37 100.0 37 ..................................... ACTTAGGCTCCAGTTTTTTCCAGAATTCTTTCTTCAA 269 37 100.0 35 ..................................... TCTCCTGGTATTTCTTGCATTTTTTTTCACATCTT 197 37 100.0 38 ..................................... ATTATAATCCTCCAGTAATATGCTGATGCCAGCGTCAG 122 37 100.0 37 ..................................... ATCATCCTCATAATTAAACCCGCCGCTCCCTTTATAG 48 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CTTCAAAAAGAAGATTGAAACCATTATTTCCATTTTTTTTTCCTCTAATTAATATTT # Right flank : CTTAATTTGTT # Questionable array : NO Score: 7.71 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.91, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 308-38 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_26987_length_895_cov_4.761719- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 308 37 100.0 40 ..................................... ATACTAATTTGATAATCTACGTCAAATATCATTTTAAGAT 231 37 100.0 41 ..................................... ATTTCTATTGTAGATTCTAAATCTTTCATTCGTTATCAAGA 153 37 100.0 41 ..................................... CATTTACAGCAGATATCTTTAGAAACTAGACAATCAGCTAT 75 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 41 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : AAGAACAAAGAAAGTGTACTGATTGCGAGTACAAAAGAATATGCCAACCATTGTAAGAACTATGATTGCGAATAATTTTTAAATTAAAAAAACTTATGTGATCTTGAATGAGTTTATAAATGACTTGACAACTTTAAGTGATTCAAGGAAAGAGAAAATTAGAAGACTTAAAACAACCGTTTGCTGGAGAATATCGAACG # Right flank : TTTTCTCCATATTTTTTCATTCCATTGTTCTTCCGTTT # Questionable array : NO Score: 6.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.26, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 464-56 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_275882_length_487_cov_1.227778- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 464 37 100.0 37 ..................................... TCATTATCAATGAAAAACAGGTTTATCTGTATTGTAA 390 37 100.0 37 ..................................... AATTTCAGATTCACTAAAGTTCATTGATTTCCCTGCA 316 37 100.0 36 ..................................... ATCGAACTTTTTTCACCACAACAAAGGAGGTGCCAA 243 37 100.0 40 ..................................... TTATTGGATGATAAAATACTTTGTACATTTTCTTTTCTAT 166 37 100.0 36 ..................................... ATCTATGATTTTAACAGGAATCTCCATGATATTCTT 93 37 97.3 0 .......................C............. | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.5 37 GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Left flank : CTCTATAGGGACTTCAATTATGT # Right flank : CAATTCTTCTAATTCTTTAATTATTTCAAAATACTGATTTAGTTGCAATAAATTAT # Questionable array : NO Score: 7.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAATATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 364-20 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_376257_length_460_cov_1.480480- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 364 38 97.4 41 ....................................A. GATTTGATGATCAATTTCCTCAAAAGATTCTATATTTGTAG 285 38 100.0 37 ...................................... GCAAGAGATATTTCACATACACATAGAAATACTAAAG 210 38 100.0 38 ...................................... TATAATGCTCCCTTGGCCATCGCATAAAAGTAGCGTTG 134 38 97.4 38 .....................................C TGCTTCAAACAATAACGTTACAGAATGCGTTCCGACAG 58 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================= ================== 5 38 99.0 39 TTACAACTAGTATCTCAATGTAGTGAGAATTGAAATTA # Left flank : TGAATGAGTTTATAAATAACTTAACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACCTAAAACAACCGTTTGCTGGAGAATATCGAAGG # Right flank : AGCAAGAGATATTTCACATA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.29, 7:0.62, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACAACTAGTATCTCAATGTAGTGAGAATTGAAATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 1780-434 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_37832_length_1798_cov_3.405745- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1780 37 100.0 41 ..................................... TTACCCTTACTCAAAACCCTATTAAGAAAGGTTAAATCAAA 1702 37 100.0 42 ..................................... ATCGAAAATGAAACTCGAACCATAGAATCTCGTGGTAACGAA 1623 37 100.0 40 ..................................... ATGAAATACAAAGGATATGGAATTCCAGATCCAATTAAAT 1546 37 100.0 42 ..................................... AAGGTATTAGAAAAAGTGAGAGATATGAATTTATACACCACA 1467 37 100.0 39 ..................................... TACTGTATCACCGGCTTTAAGGTTGTTATCTTTGTAGTA 1391 37 100.0 40 ..................................... AAAAGATTGCTCCAGAGGCTGGTTTTCATTTCTATGCAAG 1314 37 100.0 40 ..................................... GAAGTTACTAATAGATTCTCCTGTTTCAATTTCTACTCCT 1237 37 100.0 39 ..................................... AAAAATTAAAGGTGGGAGACATCTCCCCAGTAAGTAGAA 1161 37 100.0 39 ..................................... TACTTGTGGTTGGTCAGCAACATCAACTTTCAAACCATT 1085 37 100.0 42 ..................................... ACACTTAGACCATTACCACTACCAGAGAGAGAATTATTCGTG 1006 37 100.0 39 ..................................... TATTGTAACATCATAAGTACTAACACCAACATCTTCAAC 930 37 100.0 39 ..................................... ATACAAATGATATGTACGTATAGAGGAAAGGCTACACCA 854 37 100.0 39 ..................................... CAAAACCCGAAGGAGACTTATGAGATGGTAGAGTTCACT 778 37 100.0 41 ..................................... GGAGTAAATTTGTAACTCATAATAGTACTCGAACTAAACTG 700 37 100.0 39 ..................................... AGAGAATCAAGCATTGTTGAAGTAACAGCGAAAGTTCCA 624 37 100.0 39 ..................................... TGACAACAAGATTATGAGTAGGCATATTGTTTCTTATTC 548 37 100.0 40 ..................................... CTCAAACGGGTAAGACAACTACCACTCTCCGCCTTCTAAG 471 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GGAACAGAAGGAGATTGA # Right flank : AAACTTTCCAGAAACCTTTCCTTGAGATTTACATATTTTTTTGAATAAACGTTAAATATATCTAGATTTGTTTATTTAATAATGTTTGATGAAAATGATGATGAAAATCCAGAAGTAACTATTCATGCTTCTGAAGAAGGAAAAAAAGCTTACAGAGAATTTCTGAAAGTTGATACTCATATTAAGAAGTTAAAAGATAT # Questionable array : NO Score: 7.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 533-35 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_43397_length_563_cov_0.853211- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 533 30 100.0 37 .............................. GAGCTAGAAAAAGCGGGTTTGATTATTAGACAAAATA 466 30 100.0 37 .............................. AAGGTAACATTATCATCTATCATAGTATGTCCAGAAA 399 30 100.0 36 .............................. GTGCTTGATACAGGGGTGGTTATCTGATCCTCTGCT 333 30 100.0 37 .............................. GCAGAATCGACTCCTATCCCTTCTTCAGTGGATAAGG 266 30 100.0 37 .............................. GTAATTGGACCAGAGAGTACATCGTCATCGTCATCAG 199 30 100.0 37 .............................. ATAGTAATTGTTCTTGTGTGGACCAAGATTGGGGCTA 132 30 100.0 37 .............................. GATTGTTCAGCTTATCTTGAAATTCTAGAAACTGATA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : ACAATATTGTTATAATAGATGATGCTATAG # Right flank : TTAATTAAAGATAACAAGCGACCAAGCCCTCGAAG # Questionable array : NO Score: 10.94 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.99, 7:0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 394-53 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_53374_length_409_cov_2.804965- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 394 37 100.0 40 ..................................... TAGAAATCTTTACGTTTGAAATTGTGAAGTGATCAAAGTG 317 37 100.0 39 ..................................... CAGGTGTAAAAAGAATTAATTAGCGTTATGGAACGGAAC 241 37 100.0 39 ..................................... CTTAGACAAAGAAGTCGTGATCACTCAGACAGGGAAAGG 165 37 100.0 38 ..................................... TCCGAATACGTCGGTTGTGTGAAAGCTATGCACTGGAC 90 37 97.3 0 ..........A.......................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 39 GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Left flank : ACTTATATTTTTCTA # Right flank : TACAGTTTTCTCAGTCTCCAAAAAAGGATATGTTTATTATATGTCACAACTAG # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.43, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATACAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 184-480 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_82731_length_502_cov_0.858667- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 184 30 100.0 37 .............................. ACAACTAGGAGGAAAACCTAATGCCTTATAGAGACTA 251 30 100.0 36 .............................. GAGGAAGAACTAGCTCTCAGAAAAGCATTGGGGATT 317 30 100.0 37 .............................. TAGAGTGAGAACTAATAAAGTTAAAGGCATCATCATC 384 30 100.0 36 .............................. GAAGCAGAAGCATTAAGAAAGTGGAAGTCTTTTTAT 450 30 96.7 0 ......................T....... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : GGGGATAGAAAAAGGGGATATAGAAGTCATAATATGAGCGTATAGAAATGTAAATCGTCGATCTTTATAAATGAAATACAAAAAGAAACATTGACGAAATTATGAAAAAATAAAAAAAAAGAAAAATGTTTTTAAATTGTAGAAACAACAAAATAATAGACAAAAACGCATGAAAATCGCCGGG # Right flank : TGTCTATTACAGTATCATACCC # Questionable array : NO Score: 10.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.99, 7:1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1812-2069 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_89366_length_2611_cov_2.302738- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1812 37 97.3 36 ......................C.............. TCTACATTTTCACCATTTTAGCTGAAGTTTTAAACC 1885 37 100.0 35 ..................................... ACCTGTTTTTCGGTTATTTGGTTTCCTTGTCCAAA 1957 37 100.0 38 ..................................... GCAGTTTTTCGGGACACTGGTTTTTGATGCTCTACATC 2032 37 94.6 0 ........A..T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.0 37 GTTGCAATGAACATAGCTTCAAAAAGAAGATTGAAAC # Left flank : AATTAACTCATAAAAACATCCACCAAAACTTACCGTGATTTCAAAAATTAGCCGCCAAAGGTAAAATTCAAGCCGCCAAAAAAAGAGAATTTAGATAAAGGAATCAATTTCATAAGAGAGAAGGGGTTCCCTATTTTTCCTTGTAATTAGAGTAAAGATTAAATACTCGATAATTCTTATTATATTATATAATAATAAGA # Right flank : AAACTACTTTTTTCATTTTTTATCACAAATTTAATTTTTTAATAACGATTCTCACATCTGGTTGTGACACTTCAGCAAAGCGAAGCAAGTGCACAGCTTTACCGAAGGCTACATATTTAGGTGCGCACTTAACGTAGCGGCGCGAATTGCGCGCAACCTGGTGATGTATGATAGACTTGTTAATAATATATACGATTTTT # Questionable array : NO Score: 7.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:1, 7:1.08, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGAACATAGCTTCAAAAAGAAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 498-6 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_93598_length_1556_cov_4.508747- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 498 36 100.0 40 .................................... GTAAGTCAAAAGTCACAACAGCATAAGCATTGTGCCTGTG 421 36 100.0 39 .................................... AAACTAAAGGTCTTTTTACTTCTTTAAAAGATATTTGCG 345 36 100.0 39 .................................... TAGTGTTGTTGCTGAAACCCTGTATTTATCTTCTGCAAG 269 36 100.0 40 .................................... AAGAATAAACGGTAATGTTCAATAGAGTGTTTGTTTCATG 192 36 97.2 37 ....................C............... GATTAGTTCCCCCTCCAGCATCGTATAATCTTAATTG 118 36 100.0 39 .................................... AGAGACAATCTATTTCGCTTTCATAATCAAAATGTATTG 42 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 99.6 39 GTTACAACTAGTATCTCAATATGTGAGAATTGAAAT # Left flank : GAACAAAGAAGATGTACTCATTGCGATTACAAAAGAAAATGTAAATCATTGTTAGAACGATGATAGAGAATAACTTACAAAATTAACAAATCTTATATAATATTGAATGAGTTTATAAATGACTTAACAACTTTGAGTGATTCAAGAAAAGAGAAAATTAGAAGACGTAAAACAACAGTTTGCTGGAGAAAATCGAACAG # Right flank : TAATAA # Questionable array : NO Score: 7.40 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:1, 7:0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATATGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 3351-2319 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_94848_length_3363_cov_4.122064- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3351 37 100.0 38 ..................................... TAGCAAGAGATATTTCACATACACATAGAAATACTAAA 3276 37 100.0 39 ..................................... TGTCGGTATGATTCGGTAGATCGCTTTGCGTTTTCTACC 3200 37 100.0 42 ..................................... TCAAAGAGCAGGCTGAAAATATGATGAAGTACTCCGGAAATG 3121 37 100.0 40 ..................................... TAACGTAAGATACAATAACAGAGCTCGCAGTGAAAACCTT 3044 37 100.0 39 ..................................... TTTTTTAGGGGAATATAGATTAGTATGAAAAGTTATTGT 2968 37 100.0 39 ..................................... TTTTACATTTAATAATTATTGAAGGAATAGTTTCCCATT 2892 37 100.0 38 ..................................... TAAGAAATATAATCGGTATTAGTTTCAATCTTATAATA 2817 37 100.0 40 ..................................... TCTTTTAGTATAGGGTTCTTTAATAGATGCTTTTTTAGTC 2740 37 100.0 41 ..................................... AACAAGAGCCATATCGAATAATCTTTTTTTATATTCATAAT 2662 37 100.0 38 ..................................... TCTGGTTATATTTTCAGTGGTGTTTTTGATGAAATAGT 2587 37 100.0 39 ..................................... CTAAAGACGCTACAACTTGGACAAAAGTTGATACTTTAA 2511 37 100.0 40 ..................................... CATCAAATTCATTAGTAGTGTGCATAAACCATGTAAAAAC 2434 37 100.0 41 ..................................... TCAGGAGCTACTTCAACTGTGTAATTTTCCCAGGATGGTAA 2356 37 91.9 0 .......T...........CA................ | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 99.4 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : TTCTATATTTGT # Right flank : ACCTGTTCCTGAAATAGTAAATGGAACACCATCTCCGCATTACAATTAGTATCTATTCGTTTAGGAAAAACTTTTTACCCTTAAAATGATAAACACTATGATGATAAAATACTTGCGTGTAAAGAATTTTAAATCAATAGAGAATTTAGAGATTGAACCAACTAAATTCAATATATTGATTGGTTCTCCTAATGTAGGAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:1, 7:0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 3326-3514 **** Predicted by CRISPRDetect 2.3 *** >lcl|7H_NODE_96745_length_3842_cov_5.784118- Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3326 37 100.0 40 ..................................... TTAACTGGCATCTGGTCGATAAGTACCATATACTCTGCTC 3403 37 100.0 37 ..................................... CTTGAGTTGTCGCCCCTGTTCCGTCCGAGATATGTAA 3477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 39 GTTGCATTTGATGAATCATTGTAAGAAGAGATGAAAC # Left flank : TAGTTCGTTTTTACTGTTAAGCAGGTTCTTTAGAAGACTGCTAATAACAAATCTCTGGAAAGATTAGCTTTTTGACCTAAGTGAGCAAATTGCTCACGCAGGTATAATTGTAAAGATAAAGAGAGTAACTTTTGATATGGTTCTTAAGGGCGATTACATTTTATTTTTTAACCTGCGCGGACAATTTGTCTATGCAGGTA # Right flank : AGTAAAAGTATTTGTCAGAAGACTTGTCAGAAGACTTGTCAGATTTTCTTCTGTTGCATCTGACGAATCTCTTTAGAGGTGTTTGGCAAAAAGGCTTGAAGTCTCTGTTATATTCTAGAATAAATTTTGCTGTGACATATAGTATACAGCTAGTAAGAATAATTCAGTAGCGTGAGATTATCAAACTCTTTTTTTCTAAA # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:1.00, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTTGATGAATCATTGTAAGAAGAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 230-574 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_122765_length_759_cov_1.015823- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 230 37 100.0 39 ..................................... CTTCTTTATCTCGTAAGGGTAAAATAGGATATTCTATAT 306 37 100.0 40 ..................................... CTGTAATTACTCGCGTCTATAATCAAGTTGTTTGGTAAAT 383 37 100.0 41 ..................................... ATTTGAGAGCTTCAATAGAAGATTGTTCTTCTTTGTAAAGA 461 37 100.0 39 ..................................... TATTGTTTGTGAAGATAAGCCAAAGATTCCTTCTCCTTC 537 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GAAGAACAAAGAAAATGTACTGATTGTGAATACAAAAGAATATGCCAACCATTGTAATAACATAATTGAGAAGAATTTTTAAATGAATAAAACATATATAAACTTGAATGAGTTTATAAATGACTTGACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACGTAAAACAACTGTTTGCTGGAGAAAATCGCTCG # Right flank : ATGTTTTAAAAATTAATGACATTACATACATTAAATCAATACGGACACGACTTTCAAATAAAGTGTATTTCATCTTTATTATCTCACAAGGAATTCTTAGTTAACATCCATGATATTATTTCGGATAAATACTTTGAAAACCCCGCACATAAATGGGCTATAAAAGAGATATTAAATTATTATGA # Questionable array : NO Score: 7.12 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.32, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 239-429 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_148249_length_433_cov_1.620915- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 239 37 100.0 39 ..................................... TCAAGAATAGGGCTCATCTCTTCTTTACATTCGGGGCAA 315 37 100.0 40 ..................................... GCGATGCGCTTATAGCGGGCATGGGTACCTGCATAGGATA 392 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AGAAGAAAAAGGAAAATGTACAGACTGTGAGTATAAAAGAATATGTCAACCATTATAAGAAACATAGAGAGAAAACTAATAAAGGAAAAGAAAAACTGTATTTTTGAACGAGTATATAAAGAACTCAACAACTTTGAGTGATTCAAGAAAAGAGAAAATTAGAAGGCGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : ATGT # Questionable array : NO Score: 6.92 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.52, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 479-60 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_263308_length_519_cov_2.076531- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 479 38 100.0 38 ...................................... TTTCCAACGATAGCTGTTTTTATTAAGTGGTTTTTTAC 403 38 97.4 38 C..................................... CAGTCTTGACTCTATATATACCCTTTTGGTCTCTAACC 327 38 100.0 38 ...................................... CATATATAGTTGCTTTTGTTTGTGAGTGTGATCGTTCC 251 38 100.0 39 ...................................... ACTGCACAGTTTCTCATCGATACCAGTCGTTTTGTACCG 174 38 100.0 38 ...................................... GATAAGTCACACTGAATTTATAAGCTGGTATATACAGT 98 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 99.6 38 TGTTACAACTAGTATCTCAACATAGTGAGAATTGAAAT # Left flank : AAATTCATTTGAGGTCGGAGTGATCTCTTTACTTAACCCG # Right flank : TGTATCATTATGAAGATAATAGCAACTATATATGATTTCAATTCTCACTATGTTGAGATA # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.29, 7:0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTACAACTAGTATCTCAACATAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 402-55 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_265157_length_443_cov_1.443038- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 402 38 100.0 39 ...................................... CTTGTTCACTTGTACCGATAAATCTCGCTATAAAAGGCA 325 38 100.0 40 ...................................... ATCGCTTGTAAAATTACCGCTATGGCGCGGTTAGAATATC 247 38 100.0 40 ...................................... TCTTTCTTGGCTTTAGTAACTTCTTTCAAAGAAGTGTTAT 169 38 100.0 38 ...................................... CCGTTTCCCCGGCTATCACCGCGGTGGGGACGTACACA 93 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 100.0 40 AGTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : GGCCACGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTG # Right flank : TCTTGTTCACTTGTACCGATAAATCTCGCTATAAAAGGCAAGTTACAACTAGTAT # Questionable array : NO Score: 6.49 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.29, 7:0.40, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 626-49 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_286241_length_634_cov_2.455621- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 626 37 100.0 43 ..................................... GAATACTTGTGAAAGATTATAATCCACAATTCTATCAGCACTT 546 37 100.0 40 ..................................... ATCTAACAAGTACTAATGGTTTCTTTGAATTAGAATACAA 469 37 100.0 39 ..................................... ATACTTCTATGCCTTTCAAAGTATGCGACTCTACCTATA 393 37 100.0 38 ..................................... TGAAAAAGATAGGTCCTATTTGTCTCGTGGAATCTTAT 318 37 100.0 39 ..................................... AATGGTCGGCGACTACCAAGAAACCGGAACTCTTGAACC 242 37 100.0 41 ..................................... TGAGTTTGAGCATATCTACAGTAGATAAACTCATGTCGTAA 164 37 100.0 41 ..................................... GTCTCTAAAGAAATGGTTTGAGCTCCAACACTTTCTTGACA 86 37 97.3 0 ............................T........ | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 99.7 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AGCAACAG # Right flank : TTCTCACTACATTGAGTTACTAGTTGTAACGGTTCAAGAGAGATCGGAA # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 66-489 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_39408_length_536_cov_3.000000- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 66 37 100.0 40 ..................................... CTACCAACAGATAACGTGACCATTTATGCTATGGTTGGTG 143 37 100.0 42 ..................................... ATAATAAGAGATCTTGGTGTAACCTTTGTAGTTTGCAAAGGA 222 37 100.0 39 ..................................... ACTTGAGAATTGAGTGAAACTGTAGCCATGAATACTATA 298 37 100.0 40 ..................................... CTAAGTTCGATGAAACCTGGCATCAAGAAAGAACTACTCA 375 37 100.0 40 ..................................... GCTAAAATAATCCAACCATAATGCGATAGAAGTTTTAGAT 452 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 100.0 40 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGAAGAAG # Right flank : AGGTAGAAGCAATACTTAACGAATTGTTTGATGAATTGTGTTACAAC # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 264-1 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_41117_length_533_cov_3.500000- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 264 36 100.0 39 .................................... TTCCCAATCTTGATATTGGATAGGACTTGCTACATTAAA 189 36 100.0 40 .................................... TTTTATATTTTCTTTGATTGTTCTTGTCATTTTTCATACA 113 36 100.0 40 .................................... TCTTTTTATATCCAATTTATAGGCTTTATTAAAAGTTCCT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 40 GTTACAACTAGTATCTCAACATAGTGAGAATTGAAA # Left flank : GAGAACAAAGAAAATGTACTGATTGCGATTACAAAAGAATATGCTAACCATTGTAAGAACGATGATTGCGAATAAATTATAAATGAACAAATCTTATATAATATTGAATGAGTTTATAAATAACTTAACAACTTTGAGTGATTCAAGGAAAGAAAAAATTAGAAGACGTAAAACAACCGTTTGCTGGAGAAAATCGAACG # Right flank : A # Questionable array : NO Score: 6.97 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.37, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAACATAGTGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1779-82 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_4426_length_4926_cov_4.789748- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1779 30 100.0 37 .............................. GGAGTCGACGCAGCTTGATAATTGACTTTAAGATATT 1712 30 100.0 37 .............................. ACTCTAAGACTGTATCGGAAATACGTGTAAGTTTAGG 1645 30 100.0 37 .............................. ATGGTACACATTTACTAGATATTCAACCTTACAAAAA 1578 30 100.0 36 .............................. AAAGATAAAGAATAACCAGCAAGAAAACCAAGAATT 1512 30 100.0 36 .............................. ACAATTACGAATACTCTTTGGAACAGTTAGATAAGA 1446 30 100.0 37 .............................. CATATTTAGAATAGTTTCTTTCTTTCTTCAATTTATC 1379 30 100.0 36 .............................. TTGGCAATTTGTCCGGTTCATGCCACAATTAAATTT 1313 30 100.0 36 .............................. TCGTAAACAAGAAGAGGGCTATGATAAGGACCTTCT 1247 30 100.0 37 .............................. TTGTCACCAAGAATAGCACAAGTTAAAGTTTTAGGAG 1180 30 100.0 37 .............................. TATGTTTGTATTGGTGATAATCCACAACATATAGGTA 1113 30 100.0 36 .............................. AGACTTGGTAACTTAGCTTCTAATCCTGCCCAACTA 1047 30 100.0 37 .............................. ACGTTAGTTTTTGATCAGCAGAATCACAACGAATTGT 980 30 100.0 37 .............................. TTAATATAAACAGCTGCTGTAATAAAATCTAAACCTA 913 30 96.7 36 .................C............ TTGCTTAAACCTTCTTATTTCCATGTCTAAATGGTC 847 30 96.7 37 .................C............ TAGGTCTATAAAATCAATATCTATTGCGGGAAAAATA 780 30 100.0 37 .............................. GACATTTATATCGTTTATAGAAACGATTCAGACGTGC 713 30 100.0 36 .............................. ACGTAAAGATGCTCTCAGCAGAGATGCTCAAAATTT 647 30 100.0 37 .............................. TTATGGTCATAAGATAGTTTCTGCTTAACCTTTAATT 580 30 100.0 37 .............................. GCATTTGACACCTTCCGCTTTAATTTGTTTAATACTC 513 30 100.0 38 .............................. AATAATAGAGAGGATCAGCTATTTCATCAACTTTGATT 445 30 100.0 36 .............................. CTGATTTTCTTTAAAGTAACGAATAGCAGAACCACC 379 30 100.0 37 .............................. ATGAAGCTATTACTTTACTTTTCCAAGATCGTAAAAA 312 30 100.0 37 .............................. CCTAATTTATTGCCCAACCAAGCAAAAATCCAAATAG 245 30 100.0 36 .............................. GTGTTTGAAGAGGCTGATAAAGCATTTCGGTTGCAT 179 30 96.7 37 .................C............ TTGACAATGAATTGGTATTGGTCTATTACAGGTTCGG 112 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.5 37 GTATAAATCAGACCATTATGGGATTGAAAT # Left flank : ATTGAAAGAGAATTGATGGGGATAGAAAAAGGGGATATAGATGTCATAATATGAGCGTATAGAAATGTAAATCGTCGATCTTTATAAATGAAATACAAAAAGAAACATTGACAAAATTATGAAAAAATAAAAAAAAAGAAAAACGTTTTTTAATTGTAGAAACAAGAAAATAATAGACAAAAACACATGAAAATCGCCGG # Right flank : TCCTAATTTATTGCCCAACCAAGCAAAAATCCCATAATGGTCTGATTTATACCTATTTGAGATCGGAAGAGCACACGTCTGA # Questionable array : NO Score: 10.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.99, 7:0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 310-45 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_62631_length_441_cov_1.331210- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 310 37 100.0 40 ..................................... GCAGGTTGAAAGGAGAATGCAGAGTGAGTATGTCGCTGAA 233 37 100.0 38 ..................................... GATCTAGATAAGTTTCGCTTGGAGCACTGGATTTGATA 158 37 100.0 39 ..................................... CTTAGCAATAAAGCTTTTGAAGAATTAGCTAGTAAAATA 82 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 39 GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Left flank : CGAATAATTTTTAAATTAAAAAAACCTATATAATCTTGAATGAGTTTATAAATGACTTGACAACTTTGAGTGATTCAAGGAAAGAGAAAATTAGAAGACGTAAAACAACCGTTTGCTGGAGAAAATCGAAC # Right flank : TTCCAGAACGAACTTTGAATGAGTAAACCTCACTTTCATAGGTTA # Questionable array : NO Score: 7.09 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.49, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAGTATCTCAATGTAGTGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2111-1489 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_69801_length_2130_cov_4.610085- Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2111 30 86.7 37 .A.G..C.A..................... CCTAATTTATTGCCCAACCAAGCAAAAATCCAAATAG 2044 30 96.7 37 .................A............ TTGGGTAGACGGTCATTAAGGAGCTTACTGAGAATTT 1977 30 96.7 35 .................A............ TTGACAGACTCTTAACTTTTGAAGATGAACTGAAA 1912 30 96.7 34 .................A............ GGAGTCTTAGTTTACAATGAGGACAAAAAGTAGG 1848 30 100.0 36 .............................. GATTATTCCTCAAGATACTGAGGTAATTAAAGATTA 1782 30 100.0 34 .............................. TTTTTCTCGTTTGTGGTTTGGAATTCTTAGCACC 1718 30 100.0 37 .............................. TACTAAAATAAGCATGAATAAAACCATCATCAATATT 1651 30 100.0 36 .............................. AATGATCATTAGTCTATTTCTTGTTTCTACAAGTGT 1585 30 100.0 36 .............................. ATATAATTATCCACATCTATGTTCTCATAACTGAAC 1519 30 86.7 0 A.....C........C...........T.. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.3 36 GTATAAATCAGACCATTCTGGGATTGAAAT # Left flank : TTGCTCTATTACAGGTTCG # Right flank : CATACTCACATTGATAATAAAGGACATGTCCTAATTACTTAATCTCTCTGAAAATGTAACTTCATAACTACAAATAAGTGTGAATCTGTAATATCTTGGAAATTACTATTTCTAAAATTATATCTCTTCCAGATATGTTTCTTTTTCTGCTTTATCAAAATGTTCATCCAATAAAACAATGGTTTTTTTTAGGACTTCTT # Questionable array : NO Score: 10.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.99, 7:0.87, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATCAGACCATTCTGGGATTGAAAT # Alternate repeat : GTATAAATCAGACCATTATGGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 672-862 **** Predicted by CRISPRDetect 2.3 *** >lcl|8H_NODE_72719_length_897_cov_3.619481- Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 672 38 100.0 38 ...................................... TTACCAACAGATGGTAATGAAAAAACAATTGTTGAAGT 748 38 100.0 37 ...................................... AAAGATTTATTTGAATTGGTTACAAATTCAATGCCTT 823 38 94.7 0 ............................T..T...... | A [824] ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 98.2 38 TGTTGCATTTACTAGCTTACTGATTCATCAAATGTAAC # Left flank : CTCTTCCCCTGCCAATAATTACCCAACAATAAAAAACTCTCGTCTCAAGTCTCTTTCCCTCGAAGAAAAAATCACTGAAATTACTTAACCAATAATAGAAAAAAGATGGGGGGTTAAGACGTAAAGTAACAAAGGTTTAAAAGCTGAACGACAGCAAACGACAGCACAGGGTTGCATTTAATGCAATTTTAGTATATTCC # Right flank : GAATTAAAGATCAGAAGAGCCTCATGTCGGGAAAG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.29, 7:1.24, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCATTTACTAGCTTACTGATTCATCAAATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 457-21 **** Predicted by CRISPRDetect 2.3 *** >JAEOUN010000117.1-MAG: Candidatus Thorarchaeota archaeon isolate FT5_026 k127_48597994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 457 31 100.0 36 ............................... CCAAAGGAGCGATTGAGCATCATCAAGAACAGTCAG 390 31 100.0 36 ............................... GGAATCATTTCTCTTAACATCATATCTGATGCGGAA 323 31 100.0 36 ............................... TTTTTATCCAGCCATCGCTTAGCATGAACCTTCATC 256 31 100.0 36 ............................... AATGGCGCGAAACATCAGGGACTATGCTTCAAAAGA 189 31 100.0 38 ............................... GAGATGACTGATTACTATCTCTTTTCATATCTCAATAA 120 31 100.0 37 ............................... GCGTTTCAACTGGTCGACAAACCTGACAAGTTGGACT 52 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 7 31 100.0 37 GTTAGAATCAGACTAGAAGTAGGGTTGAAAC # Left flank : AATAATGGATATTTTGGAGGAATATTTCACTTTAGTGTCATTGATTTGATTTTTTCATTTTGCTGTTGATTTCATCTGGAATAAAAACACTAAATAGAAAAAATTTCATAAGTCTTAACATAACCTGCGGTTCGCAAACCACCATTCTAAAAGCAATAACCATAAGGCTTTTTTTAGTAAAATAAGCCAAAAAAGACTTG # Right flank : CTTTCTGTAGACCTCAAAGGT # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.34, 7:1.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATCAGACTAGAAGTAGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 154522-152022 **** Predicted by CRISPRDetect 2.3 *** >JAEOUO010000002.1-MAG: Candidatus Odinarchaeota archaeon isolate J65_bin.29 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 154522 30 100.0 36 .............................. AATACTTTAAAGTTATTAATATTATTCCAATGAATC 154456 30 100.0 36 .............................. GAAGTCCAAAAAAAAGAGATGGGTCTTTCAATCCAC 154390 30 100.0 36 .............................. CTTGCTCGAGAAATTGGAGGTGTATGTCTGATGCCC 154324 30 100.0 37 .............................. ACAGACGGAAATTGGATGACAACTACAGGACTTCATT 154257 30 100.0 37 .............................. ACAACAAGGATCAGTGGCTCTACTATAACGTTTTCGA 154190 30 100.0 39 .............................. CGCATAAAGTTGTGACAATTAAGTATGGGATGCGTAAAA 154121 30 100.0 38 .............................. GGTTATGATGATGGGGAAGACTTTTCTGGAGTTAACGT 154053 30 100.0 36 .............................. TAATCCTTTAACCCGTACAGCGGTGGGGGATGATAT 153987 30 100.0 37 .............................. TTAAACGCTATTATGATGTAGCGAATTTTTTTGAGTC 153920 30 100.0 36 .............................. TAAGTTACCTAGTATTTCAATCGGGTAAAAGAGACA 153854 30 100.0 37 .............................. AGGTTTACGATGTTAGCACCGCTATGACTCTAGCCGT 153787 30 100.0 36 .............................. TGAATATGAATATAACGGGTATAACACTGCTTCAGT 153721 30 100.0 38 .............................. TATTTACAAAAATTAGGTTTAGTTGATAAATGCGTTTT 153653 30 100.0 35 .............................. AAGAAAAACGGGTTTACAGCAGACGGGGAGAGACG 153588 30 100.0 37 .............................. AGCGTTGTAGGACCGTTCAGAGTCACAGCGGGAAATT 153521 30 100.0 37 .............................. ACCTTATTCTCTCAGATGGCGGCTCCGCTGGATTTAG 153454 30 100.0 41 .............................. CTGTCCGCAGTGAAGAATAGAACTATACGGCCTAAGTAACC 153383 30 100.0 36 .............................. TACAAAAAGAAGTACAGAAAGAAAAAGAGAGGCTAA 153317 30 100.0 36 .............................. TTAAACCGATTAAGTAATATTTTTTACCGTTTATTT 153251 30 100.0 36 .............................. TCGATAAAGCTAGGAATCTGAGGGTTAACGCAGTAA 153185 30 100.0 37 .............................. TCGGCAGTAAAACTTTTAACAAGGTTAAAACTGTAGG 153118 30 100.0 36 .............................. TGGTAATCGCTATCGTGCTTCCGTACGGTTTAGGTT 153052 30 100.0 41 .............................. CCTGAACTAGCTGTAACTGTCTCTATAAGATTACCTGAGTC 152981 30 100.0 36 .............................. CATTATTTCTACTTCTTTATTTAACGCTATATCCTT 152915 30 100.0 36 .............................. TTTGAATAAACATCTTTAGTGGTGAATTTAGATATG 152849 30 100.0 36 .............................. ACAAACCATACTTCAGAATCGCCACCTTCTAAAAAG 152783 30 100.0 36 .............................. CGTTGTGTAATCCGTAAACAGCACTTTTACTCCAAA 152717 30 100.0 36 .............................. TCATATTAAACTTTAATCCTTCGATTAAACCCATAA 152651 30 100.0 37 .............................. AATGCATTTTTTTCGGTTTAAAAAACTCTTGCAGCGG 152584 30 100.0 37 .............................. CAGTTTAGTTTAGATGCGCAGTTTATGATGATTTGGT 152517 30 100.0 36 .............................. CCCGTCAGGCTCCTGAGTATATTCCAAATGATGTGA 152451 30 100.0 35 .............................. CACTAAATAAAACTACGGATAATGTCGACATTCAA 152386 30 100.0 36 .............................. TATGAAGATAATACTTAGTTGAGGTGATATAAAGTT 152320 30 100.0 36 .............................. TGGTCAAAAAAAATAGTGATAAAATGGTGATATTAT 152254 30 100.0 37 .............................. TAGAATATTTTTTGAGGAGGTTTCGGGGTGGCGGGGA 152187 30 100.0 37 .............................. TCCAAGTATTAGTGCCTGTTGAAATCGTATACCCGTA 152120 30 100.0 38 .............................. CAAGGTAAAGCAGATAAGCGTCGTGTATTATATTTCTG 152052 30 90.0 0 ...........................TGT | ========== ====== ====== ====== ============================== ========================================= ================== 38 30 99.7 37 GATAGTAGAATACCTATAAGGGTTTGAAAC # Left flank : AAGGGTTTGAAACGGGGAATACGCGTATATCACTATAGTTCCAGGTTTC # Right flank : GTTGGTTTATGTTTGTGTTGTTTGTTGGTGTATTTTTGAGGGATTGTGTATTTTTTAATTTTAGGTTTATTGTGGTTAGCGGGATTGTTTAGAGTAGATTTAAATTTACATGGGGATTAATAATAATGTGGGTAAAATATGGGTGGCGGATTGGTTTGAGAAAAAGGTGGGTGAGTGATTGGTGGCCTAATCGGTTGAAT # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.99, 7:0.84, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAGTAGAATACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9781-9067 **** Predicted by CRISPRDetect 2.3 *** >JAEOUP010000048.1-MAG: Candidatus Lokiarchaeota archaeon isolate N1B_bin6.179 scaffold_17053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9781 37 100.0 38 ..................................... CACACGGTATTTATTCCGGAAAGTATTAAGGATCTCAT 9706 37 100.0 37 ..................................... GTAGATCATATATATCCAAACTTCCTAAAGTATTTTT 9632 37 100.0 39 ..................................... CACGATAGTGTGCAATAGCTTCCCATTCAGAAGCTGCCT 9556 37 100.0 36 ..................................... TGCATATTGATTATTATAAACCCAAGGAATCCGACC 9483 37 100.0 39 ..................................... TCTCTAAAAAAATATCTACCTTGGGATTTTCTGTATATT 9407 37 100.0 40 ..................................... CAAATCGCAGGAGGTATAATTCATGGGAATACTATTTTAC 9330 37 100.0 38 ..................................... TTTTACTTACGGAGATGTGGTTGCGCCAGTTGAACTAC 9255 37 100.0 37 ..................................... TGTGGGACATAAGGTTAAGTAGTGAGAAACATGCAAC 9181 37 100.0 40 ..................................... CAAAGAGCGAATTACCTCCCATACATTGCGGTACACATAT 9104 36 97.3 0 .......................-............. | G [9083] ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.7 38 GTCTCAGAAGTAGTTCCTCAAAATAGAGGATTGAAAT # Left flank : CTCGGAGA # Right flank : AAGTAATTTGTCACGAAAATGTTCTCTGCACCTATTACTCCAGAGGGAGAATTCTTTCTCCCTTTTTTGTTTAACAAAAGGTAGGTAACAAATTCTGGAATAGGGAAAATAATGATAAATGGTAAAATCTCCACAGGGAAGAAATAGTAGATTAACAAAAAATCAATCAAAGTAGGTATAATGCTTATGATTACGCCAAA # Questionable array : NO Score: 7.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTAGTTCCTCAAAATAGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 6-1379 **** Predicted by CRISPRDetect 2.3 *** >JAEOUA010000007.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT6_002 k127_48267498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 100.0 36 ..................................... TTTTGTCAGTTTTAGCGTGGATTTATCGCGAAATAC 79 37 100.0 36 ..................................... TAGGCAATAACAGGCGCGAGAATCGTTCCCATTGCC 152 37 100.0 39 ..................................... CTTGTGTGGCGTAGTATTGCTCGGAAAGGGATTTACAGA 228 37 100.0 36 ..................................... TTGGGAGTGGGAGACATCAAGTAATCACTTAGTGAT 301 37 100.0 37 ..................................... ACATCTTGGGGCGGGTTTAGAGAATTTAATGATAATA 375 37 100.0 38 ..................................... TTAAGGCAATTTGTAAATGCTCTTAAAAGAGCATTTCC 450 37 100.0 37 ..................................... AAAAGAAACGCGATAATTAGTATTGAACACTTAGCCG 524 37 100.0 39 ..................................... TCATTATGGACTCACCCTTTCGCGTTCTTTATCTATTAA 600 37 100.0 36 ..................................... CTATAATTCCCACCAATTGATCCTATATGTGTCCAA 673 37 100.0 37 ..................................... AAAGGAGGTTCGATAATTAGCATTGAACATTTACACA 747 37 100.0 38 ..................................... TTAAAAGAGGTTTATACTATTGTAGAATTATGGAAATT 822 37 100.0 36 ..................................... TCAGAGGGAGCATTTGTGGGAGGGGTTAAAGCAGCA 895 37 100.0 37 ..................................... TTAACATTATGATTAGTATCATAAGGCTTAAATTGAT 969 37 100.0 41 ..................................... TCCTTATTGTCTCGGGTTTATATTGCATTGCCATTTTTTTT 1047 37 100.0 38 ..................................... TCAAGAAAAGGAACTTCTATCAGCATTAAAAAAAACAG 1122 37 100.0 37 ..................................... CTTAAAGAAATTTATACTACTGTAGAATTGTGGAAAT 1196 37 100.0 36 ..................................... CCAATCAGAGTTATCTACATTATATAACATTATTTT 1269 37 100.0 36 ..................................... AGAGGAGGAGGTGAAAAATAAAAAATGAGTCAAGCA 1342 37 94.6 0 ......T....C......................... | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 99.7 37 ATAGCAAAGAATGTAGCTTCAACAAGAAGATTGAAAT # Left flank : AAAAGA # Right flank : TCAATTGTTTCGAAAATTGCTTTTAAATCATCTTTATATAGAAGAGAATATAACTTCAAGAAGACTCGGTTATCTTTTTTCTATCCTACAAATAAAATTTACCTTTAGAATATAGATCTTTTTACCAAATATTTGAGCAATACTATTATGTCTTTTCATAATTTAAAACCACTAAAAATTTTATTTTTAGAAATATACCT # Questionable array : NO Score: 7.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:1, 7:0.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGCAAAGAATGTAGCTTCAACAAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 5888-5534 **** Predicted by CRISPRDetect 2.3 *** >JAEOTJ010000197.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT1_065 k127_19338239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5888 30 96.7 35 ...A.......................... ACAAGATTGTTTGGCTCCTTCTTGGGCTGTAATTC 5823 30 100.0 37 .............................. TGGGTTGTTGGCTTAAGTTTCCTCTTAAAGGAATATC 5756 30 96.7 36 .......................C...... AATTATCAACAAACATAAAAGACTGAAAAACTGTAA 5690 30 96.7 31 .....C........................ CTAATTGTTTTATGTGTTCATTTGGTAGATT 5629 30 100.0 35 .............................. GTTTCCGTTATTACTGAAATCCGACACCTCATCGT 5564 29 90.0 0 .....................-...C.T.. | C [5540] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 35 GTTTGTGTTTAACTAGAAATAGATTGAAAC # Left flank : TCGCCTAAAAAAGAAAAATAGCAGCGTCAAATGTTTGTATAATGACTATTGCTGGAGTGGATGACACGGGGGTGAAATCATAAATAAAAAAATTTAATAAGAAGATTGTGCTCTTATATATAAGATGCATCATGCTCGTACTTGCATAAAGTGAACTGCAAAATCGGCTGTAGATGCATTTTTTTGTGAGAACACTACCT # Right flank : CTTGGTTCAAGACGTTTAATTAATATTAATGTTCTATATTTAATTTTAACTTGAGAGTTTAAAGTAATATAATAAAAAAGGGATTAACTATAATCTTAGTTTTATTCAAAATTTCAAATGAATAAAATTGAGATCTAACACTTTAAATCCGTAGAATACGACTTCCCTATGAATAACAACAAGTACTTCTATAAAATTAT # Questionable array : NO Score: 7.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.99, 7:0.81, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTGTTTAACTAGAAATAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 5487-6431 **** Predicted by CRISPRDetect 2.3 *** >JAEOTJ010000473.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT1_065 k127_69494206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 5487 26 92.6 34 ......T.........-.......... GACTCCTTTTGAGATCACTACAATTGTTAGCCAA C [5502] 5548 27 96.3 34 ...........T............... GAATGATTTCCACAAGACTGCAAGGTTTTTTTAA 5609 27 85.2 34 ...CC....C.T............... GAATTTTATTCTACAAAATTTGAATTATGAGAAA 5670 27 85.2 34 .C.....T.......CA.......... GGATGGAGATCAAATTGCAATCAGAAGCAATTCA 5731 27 88.9 34 ....C..........CA.......... GCTCGGTTCAAGTTATTCTCCTACGATTATAAAC 5792 27 100.0 34 ........................... ATTTCCTAATTATCACGGGATTTCCCTTTTATCC 5853 27 92.6 34 ...............CA.......... GATGAATGTTACATTTTAGCTGAAATTGAAAACC G [5867] 5915 27 81.5 34 .....T.....T...CA......G... AGATATTAGCAATTTGCTTGACAGCAATCATTCC 5976 27 85.2 33 ....G......T.T.C........... TGATTAATAAAATAAGGGAGTATGAATGGTGAC 6036 27 88.9 35 ....G..........CA.......... TGGGGTTCAGAAGATTATGATAGTATGCGTAGTAA 6098 27 92.6 34 ...........T.T............. GGCCTAAAAATTTTGATCTTGCTTATGTAATTAA 6159 27 88.9 34 ....G......T........T...... TGCAACATTGCAGAACTATTCTCAGCCAAGATTC 6220 27 88.9 34 ...........T.T.C........... GTAAGGGGACTATGAAATCCCTAACCTTCTATTA 6281 27 92.6 34 .........A.....C........... TATTTATTTCAGAAAATAGGAATAAATCATCAAC 6342 27 96.3 34 ...............C........... GCTCGGTTCAAGTTATTCTCCTACGATTATAAAC 6403 27 100.0 0 ........................... | T [6427] ========== ====== ====== ====== =========================== =================================== ================== 16 27 91.0 34 TTTTACCCCTACACGAGGGGATGATCC # Left flank : GGTTTGGATTATTAAGCATTGCCCCCATATATTAAAGTCTTTACATAATATGTATTTTAAAAATTATAAAAAAAGAGGTGTTTTCACAAGAACAATATCATACGTTTTATTGCATTGGAATTGAAACAGTTAAGACAAGTGAAGTATACTAAAAACAATCAAAATCTTTAAGATATTATTTTAATACGAAAGATTTAGTC # Right flank : CCCTCGATCAACCAAGTTATTCATACGTTAAGTCTTTCTCTTATATAATGTGATGCAATTCATTATAATTCAGTTTAAGAGTTTTTTGTTTTGATTGTTTTCTTATTTCCTTTTATAAATTAAAATTAGTTCATTTAATTTCTTAATATTATTTAGGATTATTAGAAAAAGAAAAAAGAAAGAAAAAATAGTTTTAAGCA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.55, 5:0, 6:0.28, 7:0.50, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTACCCCTACACGAGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [15-15] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2034-927 **** Predicted by CRISPRDetect 2.3 *** >JAEOTA010000029.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT1_007 k127_22354959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================== ================== 2034 28 100.0 33 ............................ GGGCGTGCCGGCTTCTTTAATTCTTTTTCTTCT 1973 28 100.0 33 ............................ GAAATGTCTTGATAAATGTTTTGAAGACTTTCA 1912 28 100.0 33 ............................ GTCCCTCAGTGTGATTAGCTATATAGATATATT 1851 28 100.0 33 ............................ GTCTTTGGCATATTCTATCACTGAGGTAAAAGT 1790 28 100.0 33 ............................ GGGATATTTCTACCGTATGCCGGAGAGATAAAA 1729 28 100.0 33 ............................ TAGAGAATTCCGAATGGGAAGACTCTATGAGTC 1668 28 100.0 32 ............................ GAAGCAGAGGAAATCAGAATGACTGGAATGGA 1608 28 100.0 32 ............................ ACATCAATTAAAAATAATACTTCAAATGTGAA 1548 28 100.0 33 ............................ AAGATCGTATAGTGCAGTAGGAAGTCCTAAAAA 1487 28 100.0 33 ............................ ACGTTTATTCTTCATGTTAAAACCAGAATGATC 1426 28 92.9 46 ...........A.T.............. TTCAAATTCAGCTTCAGATTTCGGTACCATTATAGATAATAGCATA 1352 28 78.6 110 .G.G.....G.TAA.............. CTCAAGTGGTTAAAAAAAAATCTAGACATCAATTTTAAATAGATGGCGTTCTCTATATACTATAGGCAACAAATTTTCATGTAGGTATCATGGAATAGGAAGAAATTAGT 1214 28 100.0 32 ............................ TGAGCCCTTTGGTCTCCCTACTTTACCCATTC 1154 28 100.0 32 ............................ TAATTCATGCGTAATTCTATTTGCGTCGTTAA 1094 28 100.0 33 ............................ GTATATATACAAACATACGTGGTTAATAATGGA 1033 28 82.1 49 ...C.......TAA..T........... TAGTTCTTTCGAAATAATGAAAAGTGCTCCTTCCTCACTGAATAGCATA 956 28 78.6 0 ...A......TTAA..A........... | T [938] ========== ====== ====== ====== ============================ ============================================================================================================== ================== 17 28 96.0 39 ATATTATCCACGCGAACAAGGATTGAAA # Left flank : TTTTGAGGTTAATTTTTTAATTCCCGATTATTTAGGAATAGGGAAAGCAGTCTCTCATGGATTTGGTACAGTGAAAAAAACTTCTAATAATTAAATATAATAATTTGTAGAAAAAAGAAAAAATTTATAGAGAAGAGGTGTTCTATATACTATAGACTAAAAATTCCTATGTAAGTATCATGAAATAGGAAGAAATTAGT # Right flank : ATTTTCTAAGAATTGAATTCTTACACGTTGATTTCACCCTCTCCCTATAATATTCTTTTTTAACGCGTTGTCGCGTCTCACTGACAGGAGCCAACCTTTAATTATATTAAATCAGTTTTTCTAAAGTGAGTAATATTTTTATATTCAATGTACATATTTGTGAAATTGAACATAATTTATTTTAAAAAAAGACAAAAAAT # Questionable array : NO Score: 9.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:1, 7:0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTATCCACGCGAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 11288-11699 **** Predicted by CRISPRDetect 2.3 *** >JAEOTA010000029.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT1_007 k127_22354959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11288 37 100.0 40 ..................................... TTTATATTTCTCAATTTTTAGCATAAGAGTTTGTTGAGTT 11365 37 100.0 40 ..................................... CTAAGATAATTCTTAACTGAATTAAAATCCAAATACTTTA 11442 37 100.0 38 ..................................... TTATATATACATCTGGTTTCGTCCACATCGGACAGATA 11517 37 100.0 38 ..................................... TAGACATAACAAATTCATTATCTTCGCTCATTACAACT 11592 37 94.6 35 ...T...........A..................... TCAGAGTATCTATTCTTTCTTCTACATCTTTAAGG 11664 35 94.6 0 ...................................-- | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.2 38 ATAGCATAGAAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATTTAATTTAAGATACAGTTTAATTGCATTTAATAAAAGCGAATTATAAGCTTTTAGAGCATTTTCTGAGAATTGAATTTCATCGAGTATCTTTTTAAGTAAAATGAAAATTTGTTAATGCTCGAACAAAGATATTTAAAAATTAAAAAGAAATAAGATTAAATAATTTTTTATCATATTCTATTATAGTATTATAAAGG # Right flank : | # Questionable array : NO Score: 7.43 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:1, 7:0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGCATAGAAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 20806-21740 **** Predicted by CRISPRDetect 2.3 *** >JAEOTA010000034.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT1_007 k127_27171120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 20806 37 100.0 37 ..................................... TATGTGCATTTTGCAATATGAGAGATTTCTACATCAA 20880 37 100.0 39 ..................................... TATATATTAACGCTTAAACATCCGATACAAATAATTAAA 20956 37 100.0 38 ..................................... TACTGAATTTTAATTGAGTCATTTAGAAATATCTCCAA 21031 37 100.0 37 ..................................... TTGCGTATTCACCCGGCAGTACTATCATTAATTCGTT 21105 37 100.0 39 ..................................... CAACCATTCACACCGTTAATGGTTTGAAACCATATCAGC 21181 37 100.0 36 ..................................... ATAAAATAAAGGTGATATATAAAAAATGCCTGAAGG 21254 37 100.0 37 ..................................... TCCGCCTTAAGTAAATCTGAAGCAATATCTTTCCATA 21328 37 100.0 38 ..................................... ACAAAAGATGTAACACTCACAACAGGAGCAACTGGACT 21403 37 100.0 38 ..................................... GACTTTAAGAAAACAGCTAAATATATCAAACAGAGAAG 21478 37 100.0 36 ..................................... AACTGAAATTCATCACTTTCACGACAAGCAAATCGA 21551 37 100.0 35 ..................................... TCAGATATCATACAATCATTACCAATTGTAATTGG 21623 37 100.0 43 ..................................... TAAAATGACTCGCTTTATAGCATTTGAAGGACGTGGTACATTA 21703 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 100.0 38 GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Left flank : AAATAACTTTTTTGTTATTAAAGTTTGAAAGAAATAAATCAAAAAGAGAGAATATTCCTATAAAAATAAAGCAGATTTTTTGATAAAACAATAATTTTGGAAAAAAATATTGAAAATTTTTTATTTTAATATGAAATTTTTATTAAGTTAACAAAAATTAAATATACTTTTTTTTCATATTATATTATATAGTAACTAGA # Right flank : TTATTCAGTCAAATAAAAGAACTAATAGGAGGTTAGGCAGAGAAATGAACAAATATTTCGCTCCACTCTTCAGAAGTTATAAATCCGTAGCCCTTTCGGCTATTAAACCATTTTACTGTTCCTTTTACCAATTTTAAGACCGATTTTTGAAATATTGAAAAAAGATAATTCAATTCAAAAAGAATTAATTCTAAAAAGGA # Questionable array : NO Score: 7.65 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATAGAAAATAGCTTCAAATAGAAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 281-4 **** Predicted by CRISPRDetect 2.3 *** >JAEOSY010000111.1-MAG: Candidatus Helarchaeota archaeon isolate YT_4001 k127_10420524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 281 37 100.0 46 ..................................... ATAATAAGAAGGACTTCTAACTCTTTCACGCGCTTGCCTCCTGCGG 198 37 100.0 48 ..................................... TCCAGAAGTCGAAAAATATCTATCTACTATGGATGTTAGATAGCAAAA 113 37 100.0 35 ..................................... TTCATAATCTCACCTTAAACGCGAATTGGCTCAGG 41 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 4 37 100.0 43 CTCAAAATAAGTAATCCAATAAAACAAGGATTGAAAC # Left flank : TAACCTCATTCAATTGGGATATTTTCCCGTCCCGACTACCTTTAAAAAAAGGTGTCATGATTGTTGTTACAAAAATTTATGTCCCCGATGAATCTTCGAACTTTTATAAAGGAAAAAATAATAATGCACTTTGAAATTCTAGATACACTTTTCCCCCCTCATAGTGTCTATATTTACTGCATCTTCTCAAATAGGGTACT # Right flank : CTTT # Questionable array : NO Score: 6.98 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:1, 7:0.38, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAATAAGTAATCCAATAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 7516-7850 **** Predicted by CRISPRDetect 2.3 *** >JAEOSY010000255.1-MAG: Candidatus Helarchaeota archaeon isolate YT_4001 k127_24446409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7516 29 100.0 32 ............................. CATACCAAGGGGCTACACGCGAGAACCCTCAA 7577 29 100.0 32 ............................. TCCCTATGGTTTCAATTGATTATGTAGAATGT 7638 29 100.0 32 ............................. GGCGCATTGTGCTGAATCTCATTGGACTTACA 7699 29 100.0 32 ............................. GTCTCGCTCTTCATCATAAGAGACCATGAATG 7760 29 100.0 32 ............................. TAAATATAAATCGTCTGCCAAGGGTTCCCGGT 7821 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : GATGGATGTATTAACTCCATTATATGTCCATCTAATCTTAGAAACCCCTGACAAAACCTAGTTCTTGTCGCTATCAACCCTTGAAAATTCAAGTTCCGTGATTATATGACCCGAGCACTCAAAAGCCGATTTAACAATACCAAAAAACACGAACCTCGAAATCCTTAACCTCTAACTTATTTTAAAGGAGAAAAAGTAGT # Right flank : GAGCTA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-396 **** Predicted by CRISPRDetect 2.3 *** >JAEOSY010000069.1-MAG: Candidatus Helarchaeota archaeon isolate YT_4001 k127_7077553, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. ATAAGAAAAATGATCGAAGTAGGGGGAAGGAA 63 29 100.0 32 ............................. TGGTGAAGCTTGATGGCGCAGTCCGTGAAAAC 124 29 100.0 31 ............................. GAATGAATGCTTTATTAGGCGATCCGAAATA 184 29 100.0 32 ............................. TGTAAAAAGCCAGTAGATGAGGTAGTCTATGA 245 29 100.0 32 ............................. ATCAGAGTACAGGATTATATTTCACTCGAAAT 306 29 100.0 32 ............................. GCTTCGCCGCGCTTTCTAAGGACGCGCGAAGG 367 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ATTGTCCCCACACACGTGGGGGTGTACCG # Left flank : AA # Right flank : TATTTATTAGGTCACATTTATATAGTCACAAAATTGTCCCCGGGCAAGCGAAGGACGGGGCATACTACGAGGAAAAGGCGGATGACGCGGGGGTCGGCGGGGACGAGCGGACCTTTTGGGAGGCTGACCACTCTGGTCCCTACGTGGTGATCGTGCGAGGGACGAGTGGGACAGGATCCTTCAGTTTACTGTTCACCGGC # Questionable array : NO Score: 8.02 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:1, 7:1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACACACGTGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98158-97214 **** Predicted by CRISPRDetect 2.3 *** >JAEOSU010000067.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT_039 k127_33432731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 98158 28 100.0 33 ............................ GTCCCATTCAACTTTATCCTGATAAATTCTGTC 98097 28 100.0 33 ............................ GTAATATTAACGAATCATAATGAAATCTCTTAC 98036 28 100.0 33 ............................ AGGAGGTCTAGGACAAATTATTGGGTATCATTT 97975 28 100.0 33 ............................ GCATATTATTGAGAAATATAGCAAAAAGCGATA 97914 28 100.0 33 ............................ GGCGTCATTTGGATTAGTAAACATTTTAGATGC 97853 28 100.0 33 ............................ GGTAATCCTGTATCTTCTCCCGTTTGTGGATTC 97792 28 100.0 33 ............................ GAGAAGCAGAAATAGCGAAATTTGCGTTAGATG 97731 28 100.0 33 ............................ GCCAACTACAAGCCCTAAAAGAGCTTCAGGTTC 97670 28 100.0 33 ............................ ACTACTTGTTTAAATTGTTCATAAGGAATTCTA 97609 28 96.4 47 ............T............... CAGGCAAACACATCTTCCAACAACGAAATCCAAAAAAGATAGCATAG 97534 27 82.1 48 .A..-......TAA.............. CTCAGTTTTCCAAAATGACAAATCTGAACTTCCATAAATATAGCATAG 97459 27 82.1 51 .A..-......TAA.............. CTACAAACGATATTTTAATCTCGGTCATCCTCATCCTCTTTTATAGCATAG 97381 27 82.1 52 .A..-......TAA.............. CTACAAAGAAGTTCTATTATTTTTAAAATGTAGTTCTATTAAAATAGCATAG 97302 27 82.1 33 .A..-......TAA.............. TGTAATACCGCATAACCTTCATGGGCATTATGA 97242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================================== ================== 15 28 95.0 38 ATATTATCCACGCGAACAAGGATTGAAA # Left flank : ATATTTTTTAGTAAATTTCTAAATTTTTCTATCTTTTTGAGACCGTATTTTAAAAATTATAATAATATTTAATATAATCATATTTTATTATGGAATCAAAATTAGATCGGTTTACTAGTTATTTTTATATAGAAGAAGCGTTCTATATACTATAGGCAACAAATTTTCATGTAAGTATCATGAAATAGGAAGAAATTAGT # Right flank : TGTAATACCGCATAACCTTCATGGGCATTATGAATATTATCCACGCGACGGAATATCTTCTTACATTATCAGGAGAAGAAGATAAAGTACCAGAAGAGAAATTAGGAAAAATAACAAAGTAAGGTCTGTCTAAGGCAAAATTATTAGATTACCGTATATGTGTAATTAAAAATCCCTCAATTTTTTTTATTAACTCATCC # Questionable array : NO Score: 10.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:1, 7:0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTATCCACGCGAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 99400-98466 **** Predicted by CRISPRDetect 2.3 *** >JAEOSU010000067.1-MAG: Candidatus Lokiarchaeota archaeon isolate YT_039 k127_33432731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 99400 36 97.3 36 -.................................... TTTCTTTCTCTTATAACCCTCTCTACTATAGGAATG 99328 37 100.0 38 ..................................... CCATTTAAAATATCATCGATAGCGGAATTTTTTAGTAA 99253 37 100.0 39 ..................................... ATGAAGATAAATCATTATTGAAAACATATTTACAACAAA 99177 37 100.0 39 ..................................... CCTTCTTTAGATTCATCAATGATAGTCCAAGGTAGATGA 99101 37 100.0 38 ..................................... AGATGTTTTGTTTTCAATTATCATTTTATTCTATTCCT 99026 37 97.3 38 .....................C............... CTAAGGCTTTAATAATCTGTAAGGGGGCTTTAAGGGCG 98951 37 100.0 39 ..................................... GTAGGAGAATAATAACGCTTAGCTGCCCAAAAAGCCCAT 98875 37 97.3 37 .....................C............... TTATAACCACACATCATATTAAATTCGGAAGTAGGAA 98801 37 100.0 39 ..................................... TCTATATTATCAGTAATAACTATATCCACTATTTCCATG 98725 37 100.0 36 ..................................... TAGATAATTGTCTTTCATATCTCATTACTTCTGAAG 98652 37 97.3 38 .....................C............... TTTTTTTATCACTCCTTTTTTGTATATACTTTTTTATT 98577 36 89.2 37 ...A....-.G.......T.................. ATTACGAGTAAAATCAAGTATCATGCCCTTACAGTAT G [98565] 98503 36 91.9 0 ........-.G.......T.................. | G [98491] ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 97.7 38 ATAGCATAGAAATATCCACTAAAACAAGGATTGAAAC # Left flank : | # Right flank : TCAAGTGGTTAAAAAAATTCAAGCCATCATCGAGATTGGCATAATCTCGATGAGACACTATATAAGGATTAAGAATAACTTCTATAAAAACGCCAATTAACTTATCTAATATTTTTTAGTAAATTTCTAAATTTTTCTATCTTTTTGAGACCGTATTTTAAAAATTATAATAATATTTAATATAATCATATTTTATTATG # Questionable array : NO Score: 7.45 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:1, 7:0.60, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGCATAGAAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATAGCATAGAAATATCCACTACAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 3908-3642 **** Predicted by CRISPRDetect 2.3 *** >JAEOSM010000153.1-MAG: Candidatus Thorarchaeota archaeon isolate Yap500.bin9.7 contig-145_10972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3908 37 97.3 40 .................................T... AAAGGTGTAAGAATTTCTGACACCTTTTGTTCACCTTCTG 3831 37 100.0 39 ..................................... TCTGGAATTGCGCCAACGTTGGCGCAAATTTCAATAATT 3755 37 100.0 38 ..................................... TCTGTGAGCGCTCACATAATTCTTCTGTTCTTGTCGAT 3680 36 78.4 0 ................G..CGC-.....T...A...G | CC [3652] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 93.9 39 CTTACAGAAGGTGTTGTAGATTTCCTTGATGTGCTAC # Left flank : CATGTGAAACACCTTTGTTCTTACAGCATCTCCTAACCTGCGGATTGAATGATTCCCTAGTAATTCAAGGCCATATCTATGTTACTAATCTGTCGTGGTTAGAAATCCCTGTCGTTGCCAGACGCCCCCAGAGATTCTATGTCCTTGATTTCGATTCCTAGATTGATCTTTTGGTTGAATAGAATGGAATAGACCGCCCT # Right flank : AAAGAAACCCGTATCTGTTTTCGAGAATCCCTGATTTACTTGAAAATAATGGGCCTAATTTGACACAGGTCGATAAATCTGCCCATATCTGGGAGTATCTTTCAAAGATACGGTTCCAGAGATTGAATAGAACTCGTTTGGAAGTGGTTTCAATGGGTCTTGAAAAAAATGGTGCATATGAGGGGGATGCACTATAGTGC # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:1, 7:0.49, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACAGAAGGTGTTGTAGATTTCCTTGATGTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 21592-19803 **** Predicted by CRISPRDetect 2.3 *** >JAEOSM010000006.1-MAG: Candidatus Thorarchaeota archaeon isolate Yap500.bin9.7 contig-145_727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 21592 31 100.0 37 ............................... GTGAAAACTGGCTATGGGTTGCAGACCAGACGGTAAC 21524 31 100.0 37 ............................... TTGTTGCGTTGATATCCGCGACACTAGAAATGACGGT 21456 31 100.0 37 ............................... CGGCAAGAGTGATCTTTCTTACAAAGCTCTCATTCAA 21388 31 96.8 36 ...............A............... CAACCAAGTACCCTCGTCTCCAACGGGCGTACCCAT 21321 31 96.8 36 ...............A............... AAAGGGACTGAAGCAGATTAGATTTCCTGATCTGAC 21254 31 100.0 37 ............................... ATGATAAACAAGCCCTTCTATCAGTGTTATTCTTTGC 21186 31 100.0 36 ............................... AAAACTGCAGAATGCAGGAATTACTATTACTGCCGT 21119 31 100.0 37 ............................... ATGATAAACAAGCCCTTCTATCAGTGTTATTCTTTGC 21051 31 100.0 38 ............................... TCGTTATACATCCTGCATTACTATGTAGGACTGGACAT 20982 31 96.8 37 ............................T.. TCATATTGAGCGCGTCCATCAGGTCTAACTTACCCTC 20914 31 96.8 37 ..........A.................... TTGAATATGATCCAATTGCATTAGTTGGTCTGGACTA 20846 31 96.8 36 ...............A............... AGGGCAGTACCCCTCGACAAACGCAACTTCATGTTT 20779 31 100.0 36 ............................... GGGATACTGGCACACGATCATAACCTATACATTTCT 20712 31 96.8 37 ...............A............... GTGTTTCTAATGCAGTTGAAGGACCACCTTCAATCCC 20644 31 96.8 37 ...............A............... CACCTTTAGCGTCACATTCACACATGGTAACAACAAA 20576 31 96.8 36 ...............A............... TCGAATGACAACAACAGCAACACCATTTCGAGAAGA 20509 31 100.0 37 ............................... TTATCTCCAACTCCTTCTCGGTCATTTCTCCTTCAGG 20441 31 100.0 36 ............................... AGGTATAATCAGTCAGGTCTCCGTGACCTGGTCTTT 20374 30 93.5 37 ...........-................G.. TCGGCCACCTTCTCCCTGATCCGCTCAAAGAACTCTT 20307 31 93.5 38 .......T.....A................. CCTGTCGGGTTGTCCAGTGTGGGGGCCTGGTCATTTGC 20238 31 96.8 36 ...............A............... AGAAGCCACAGCTGCGCTTGTTGCAATGAACAACCA 20171 31 100.0 36 ............................... TTTCGAGGATGGACAATATGCAGTCAATATTGTAGG 20104 31 100.0 37 ............................... GTATCTCGCTCTTTGTATTCCAAAGTTTGTTAACTGT 20036 31 96.8 37 .....................A......... TAGAGCTCTATGTGAAGCAAGAGGACTTCACACATCC 19968 31 96.8 36 ...............A............... CGGAGTACCTCAAACAAGAAGACGTTGGATAGTTGT 19901 31 100.0 36 ............................... CACAGCTCATAGTATTGATGAGGATATGAAAGCAAC 19834 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 27 31 98.2 37 GTTTCAACCCTATGTGTAGTTCGATTCAAAC # Left flank : CGGGTGAGGATTGGAGTCTATTGTAGAAAGGTTTCCTGCAATTCGAAGCCTTAAGAGGGTCTAATTCGATATCCTTTATTCTCCTGCCTTGGTATCCTAAGTTGGTCAATGGTCTCCTCAAGCTCGCTCCTAGAGAGGGTTAGAAAGGCATCCCCTTTCAGTGAAGCTTCAGGAAATTGATTTAGCACAATCCGCAACTG # Right flank : AGGGTACTTTTTTTCTTTCTTTTAGCGAAATAAGCCTTATGAAGGCTGCTTTTGAGAAGGCATTCTGTGAATCATCGGTCGTGTAATGCATTCTTGGAGTGCATATCATCTTTAATAGATTATTAGGTGCAAATATCACTCAGTAAAATTGGGAGAGAACCTTTTATTAGTTATCAGACTTATAGTCACCATTGTCCAAG # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.34, 7:0.89, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCCTATGTGTAGTTCGATTCAAAC # Alternate repeat : GTTTCAACCCTATGTATAGTTCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 14791-15281 **** Predicted by CRISPRDetect 2.3 *** >JAEORZ010000019.1-MAG: Candidatus Thorarchaeota archaeon isolate Yap2000.bin1.136 contig-145_3916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================== ================== 14791 28 96.4 38 ..............A............. CTCTTCAACCTTAATGCCATCGGCCTCGCGTTCTCGAG 14857 28 100.0 43 ............................ ACCAGCATCGACCATGGTATCGGGCTCGGGGGAGGTTCAGATT 14926 28 89.3 41 ...T....T......A............ AACAGCAATAGAGTTATTGCCATCCACCTCGGGTTCGTAGG 14995 28 100.0 39 ............................ AAATACAACGGGATTGGTATCCACCTCTCTGGTTCAGCT 15060 28 82.1 38 .G......T.T...A........T.... TGTAACAACAGCGTAGGCATCTCCCTTGGTGAATCAGA C [15062] 15127 27 89.3 98 .C.............-........T... ATCAACAACAGGGGGATTTGTATCCCCCCGTCGTGGTATGGTGTGGTAACCCCCCACCCTGGTGGCAACGACATTGGCATCTCCCTCGAGGAATCAGA T [15141] 15253 28 78.6 0 ..C....TT.....T.G......T.... | ========== ====== ====== ====== ============================ ================================================================================================== ================== 7 28 90.8 50 TTACAACACCGTGGCGAACAACACCTGC # Left flank : GTTGATGGGGGCAACCTCATAAGCATCAGCAATACACGAGTCAGCTTCACTATAAGCAATTGCAATCTTACTGGTGCATGCGTTAACACCATGTATGGTACTGATGGTACTGGAATCTACCTAAATAATGTCACCAACGGTGAGCTAGTCAACAACATCTGCAACAGCAATTGGCACGGCATCCGTCTCAAGTACTCAGA # Right flank : AATAACAACGAGATTGGCATCTACCTAGATGATGAATCAGAATTCAACACTGTGGAGAACAACACCTTCTCGGGCAACACTGAACATGATATATTCGATGAGTCTGAGTTTTCTGAGGAGTATGTTCCCGGGGAGTTTAATCCTATAATTTTCTTGCCCATCGGGCTCGCAGGAATCATAATGCTGGTTGCAGCATGGAG # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:1, 7:0.33, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACAACACCGTGGCGAACAACACCTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 78874-79019 **** Predicted by CRISPRDetect 2.3 *** >JAEORW010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate Yap200.bin5.98 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78874 28 100.0 33 ............................ CTCGGATTTATTAATCAAATTCAAACGTTTTTC 78935 28 100.0 28 ............................ TGTTTTAAGAGGTGGTAGTTACCTCGTA 78991 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 31 GGGGAATCCCCGCAGGGGCGGGGAACAT # Left flank : TGTTCTATTGGTGGAATCCGGGCCATCCCCGTAGATTGACACGGGGAGATCTTTTAGAAATCTACCAAGGTGCCTTTCCGGAGTCATCCCCGTATATACGGGGGAGATTTCAATTCAGGGAATTTCGGTACAAAATTGGTCGGTTTATCCCCGTATACACGGGGAATATTGTTTCAATAGGGCATAGCAGATCTAGGATC # Right flank : ACTAAGTCATAATGCCATTCAAATCAAAGGTTTATAGGAACCCTAATTTTCTACCAAAGAAAAATGTACTTGTCATGTATAAATGTCAAAGAGCGTCAGAGAGAAATCCCTAGTGGATATACCGAATCCATTCATATCGAATTTTCATCGTTTTATAAGGAGCTTTTTTTCTCCCTGGAAATATGTTTCCTTCAAAAAGG # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:1, 7:0.45, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGAATCCCCGCAGGGGCGGGGAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 86329-86587 **** Predicted by CRISPRDetect 2.3 *** >JAEORW010000001.1-MAG: Candidatus Lokiarchaeota archaeon isolate Yap200.bin5.98 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86329 28 96.4 30 ..........T................. TGTTATCGTCTTACAGGATGTAAAGCAGAG 86386 25 89.3 26 --.-........................ GAAATTAATACATCTCATAAAATCTA 86437 28 100.0 33 ............................ TTATTTATCTATACTTCCTACAACTCCCATAAC 86498 28 100.0 33 ............................ CTCGTTGGTTTTCCCATTCCACAAAAGTTCAAC 86559 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 31 GCATCAGCCCCGCGTATGCGGGGAATAG # Left flank : CTAAAATAAATATAAATGCAACATTTTTTCAAGTACTTTATATATAACTATAATATTTCGAATTGTTTATAGCATGAGAAATATTTCCTCCGTTTACACGGAGGAAATTTAGGATTATATCAGAGATGGGCTCTGAGACAGCCCCGGTAAAGTCCAGGGAAATAAAAATTAGTGATAATTCGGGAATCAGCAGGAGGAGA # Right flank : ACTATAATATAATTAGTTGAAAATCAGAGAGTTACAAAGACCCTAATTTTCTACCAAAAAAAGTACTTGCCGTTTATAAATGTCAAAGAGCTTATCTTTAAAGGTATAAATCCTCTTCATCCTCAGGAGCCAGATCTATATCTGAAAGAGTTCTGCTCCCACCGAAATCTAATTCTAATACTTCATCTTCTCCACCTGTA # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:1, 7:0.30, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCAGCCCCGCGTATGCGGGGAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 52-553 **** Predicted by CRISPRDetect 2.3 *** >JAEOUN010000013.1-MAG: Candidatus Thorarchaeota archaeon isolate FT5_026 k127_2251988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 52 31 96.8 36 .......................A....... TGGACTGGACTGAGACCACCAACACATTCACAATTG 119 31 100.0 36 ............................... ACAATCACAGGTAAATGTCGATAGCATGGCAGGGGT 186 31 100.0 36 ............................... GTCGATGTATGCATGGCAGACCAGTGAAGGCTGTTC 253 31 100.0 36 ............................... CGTTCTTGACTTGCTCTACATATGCATCGTATAGTT 320 31 100.0 36 ............................... TACTTTACCGTAGTTAATTGCACACAAGAACACTTG 387 31 100.0 36 ............................... CAAGATGTGTGGCTACAACCCTAATCTTGTGATTGT 454 31 100.0 36 ............................... GTTTCGATGTATCTTCTCAAGCGATAGAAATTTGTA 521 31 96.8 0 ..................A............ | C [551] ========== ====== ====== ====== =============================== ==================================== ================== 8 31 99.2 36 GTTAGAATCAGACTAGAAGTAGGGTTGAAAT # Left flank : AGTAGGGTTGAAATGCACAATCAAACTTGTCAGTAATTGCGGTACTTTGAAG # Right flank : TCACCTCTGTTGTATTGAGAGTTGAAAATGTAAATTTATGTTAAAGTATCTGTTGAATTTTTAATCTGATCAAAGGGGGATATTTCCGTGCTTCTTTGGAGGTCGTGATTTTCTCTTACTCGCAAGCATATCCAAGCCACTGCAGATCAACTTACGGGTTTCGTGGGGAAATATGACCTTGTCAATGTACCCTAGCCCTG # Questionable array : NO Score: 4.48 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.34, 7:1.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATCAGACTAGAAGTAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11977-12548 **** Predicted by CRISPRDetect 2.3 *** >JAEOUN010000090.1-MAG: Candidatus Thorarchaeota archaeon isolate FT5_026 k127_29328000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 11977 31 100.0 36 ............................... CTATTTCTTCAGGCAAACCCGATACGAACTCCTCGA 12044 31 100.0 36 ............................... ACTAGAGACACAGTTTCACTGTATATTCCTGAGAAT 12111 31 100.0 38 ............................... AAATGCAGACATTTCTTCTACAAAGATGAAGTTGACAA 12180 31 100.0 36 ............................... AATTTAAAGAGTGTCGTCTTTAGCTTCTTCAATATT 12247 31 100.0 37 ............................... AAGTCACCAGCAAAACTCACACAAATATTGAAGAAGC 12315 31 100.0 37 ............................... TGATGATTGCAAAGACTCGCGAGATATAGTCAATTGG 12383 31 100.0 36 ............................... CTCTTTCATGCTCACTTCAGAAAAATGAAATTCTTA 12450 31 100.0 36 ............................... AGATGACGGTTCAACTTTTGAAGAAGATTTGAAAAT 12517 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 100.0 37 GTTAGAATCAGACTAGAAGTAGGGTTGAAAT # Left flank : GAACCACCAGAGCGGGAATTCATACTATAGATACGATGTATTTCCTATTATTAGAGTGAATTCTTTGACTCAAAATGCCATAAATTGCTTTAATTCTGGAAAAATAGAGATTCTATTACACAACCGATGGTTCGCAGAAAGCCCCTCGAAAAGCGAACACCATAAGTCTTATCTCGCTAAAAGAAGTAAAAATACCATCG # Right flank : GTTGTA # Questionable array : NO Score: 4.35 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.34, 7:1.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7:exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATCAGACTAGAAGTAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //