Rfam ID,Description,Model length,"N sequences, Rfam seed alignment","N sequences, Rfam full alignment",N GARNET sequences,Total GARNET sequence length
RF02541 / RF02540,23S rRNA,2925 / 2987,102 / 91,25446 / 1443,32317,94059751
RF00177 / RF01959,16S rRNA,1533 / 1477,99 / 86,22178 / 632,35541,53783103
RF00001,5S rRNA,119,712,140644,55093,6357623
RF00010,Bacterial RNase P class A,367,458,6481,53493,20464485
RF00011,Bacterial RNase P class B,366,114,790,3947,1454689
RF00013,6S / SsrS RNA,187,150,3786,22856,4220285
RF00018,CsrB/RsmB RNA family,356,38,292,359,128521
RF00021,Spot 42 RNA,115,19,208,1041,122514
RF00022,GcvB RNA,198,27,234,633,127663
RF00023,transfer-messenger RNA,354,477,6693,46559,17179199
RF00028,Group I catalytic intron,251,12,2611,40,12673
RF00034,RprA RNA,108,13,98,314,34038
RF00050,FMN riboswitch (RFN element),138,146,4223,18979,2773201
RF00059,TPP riboswitch (THI element),105,115,10206,53555,5730132
RF00080,yybP-ykoY manganese riboswitch,175,29,832,2056,369145
RF00083,GlmZ RNA activator of glmS mRNA,212,21,121,561,115680
RF00101,SraC/RyeA RNA,145,13,198,522,75622
RF00106,RNAI,102,10,151,341,35275
RF00111,SdsR_RyeB RNA,100,17,239,233,22889
RF00113,Short Intergenic Abundant RNA,147,17,54,167,24816
RF00114,Ribosomal S15 leader,117,78,632,2270,267871
RF00128,Glm Y RNA activator of glmS mRNA,163,17,130,583,92050
RF00140,Alpha operon ribosome binding site,110,39,562,1719,188403
RF00162,SAM riboswitch (S box leader),108,457,6161,34758,3866030
RF00166,PrrB/RsmZ RNA family,133,37,139,802,106411
RF00167,Purine riboswitch,102,133,2660,11807,1195754
RF00168,Lysine riboswitch,183,47,2261,15537,2773261
RF00174,Cobalamin riboswitch,189,433,14022,74360,15205939
RF00195,RsmY RNA family,121,11,82,841,100515
RF00230,T-box leader,224,48,12315,129071,31136738
RF00234,glmS glucosamine-6-phosphate activated ribozyme,171,18,943,3609,627879
RF00373,Archaeal RNase P,303,70,373,2243,717822
RF00378,Qrr RNA,108,30,200,613,66178
RF00379,ydaO/yuaA leader,136,106,3917,19152,3024241
RF00380,M-box riboswitch (ykoK leader),169,159,1072,5369,904104
RF00391,RtT RNA,130,57,564,1876,242955
RF00442,Guanidine-I riboswitch,107,100,931,5116,548114
RF00444,PrrF RNA,150,18,135,1493,221531
RF00503,RNAIII,511,10,30,10,5062
RF00506,Threonine operon leader,118,25,199,746,88585
RF00513,Tryptophan operon leader,100,22,187,477,47283
RF00514,Histidine operon leader,127,33,290,1097,138517
RF00552,rncO,214,18,137,44,9378
RF00557,Ribosomal protein L10 leader,139,97,1712,3578,506299
RF00558,Ribosomal protein L20 leader,127,43,527,2659,344486
RF00615,Listeria Hfq binding LhrA,269,10,17,31,8233
RF00616,Listeria LhrC,111,12,28,164,18002
RF00623,Pseudomonas sRNA P1,180,14,69,649,116668
RF00625,Pseudomonas sRNA P11,139,15,56,502,69137
RF00627,Pseudomonas sRNA P15,119,22,88,769,91831
RF00628,RgsA sRNA,194,27,89,825,160046
RF00629,Pseudomonas sRNA P24,255,14,71,719,182948
RF00634,"S-adenosyl methionine (SAM) riboswitch,",116,40,1244,6645,767480
RF01055,Moco (molybdenum cofactor) riboswitch,135,160,1390,3517,498565
RF01065,23S methyl RNA motif,102,19,209,649,64362
RF01069,purD RNA motif,125,21,101,425,55528
RF01385,isrA Hfq binding RNA,129,10,48,119,15099
RF01387,isrC Hfq binding RNA,123,16,31,48,5891
RF01396,isrN Hfq binding RNA,143,17,140,503,71593
RF01405,STnc490 Hfq binding RNA,124,76,260,903,107611
RF01407,STnc560 Hfq binding RNA,214,12,30,60,13631
RF01411,BsrF,113,11,123,561,61963
RF01419,Antisense RNA which regulates isiA expression,187,308,1434,2037,372285
RF01456,Vibrio regulatory RNA of OmpA,140,11,43,100,13310
RF01470,Listeria sRNA rli38,150,20,100,197,29567
RF01492,Listeria sRNA rli28,186,21,418,253,46040
RF01497,ALIL pseudoknot,117,26,1415,6556,782634
RF01673,PhrS,213,13,114,792,169824
RF01675,Pseudomonas sRNA CrcZ,398,19,168,1569,620616
RF01685,6S-Flavo RNA,109,82,230,1521,168379
RF01692,Bacteroidete tryptophan peptide leader RNA,131,35,215,108,15190
RF01693,Bacteroidales-1 6S-Bacteroidales RNA suggested,179,41,230,1766,322655
RF01699,Clostridiales-1 RNA,166,194,1107,7719,1276592
RF01702,Cyano-2 RNA,204,57,66,53,10837
RF01712,Methylobacterium-1 RNA,104,34,47,35,3590
RF01718,Polynucleobacter-1 RNA,142,16,18,47,6506
RF01719,Pseudomon-1/ErsA RNA,116,19,113,788,91699
RF01720,Pseudomon-Rho RNA,102,16,90,671,67377
RF01721,Pseudomon-groES RNA,111,18,88,757,86332
RF01723,Rhizobiales-2 RNA,104,15,63,235,23892
RF01728,STAXI RNA,153,43,206,432,68349
RF01729,Termite-flg RNA,104,13,15,15,1540
RF01731,TwoAYGGAY RNA,168,210,1903,4828,798750
RF01732,MarS sRNA,143,31,106,388,55821
RF01735,epsC RNA,117,30,246,1250,143009
RF01736,flg-Rhizobiales RNA,143,13,49,342,48784
RF01742,lactis-plasmid RNA,106,14,21,17,1825
RF01745,manA RNA,193,165,183,13,2619
RF01746,mraW RNA,108,45,502,1720,179336
RF01752,psaA RNA,195,31,45,129,26448
RF01754,radC RNA,148,148,572,1922,281904
RF01755,rmf RNA,132,16,88,744,98311
RF01756,rne-II RNA,296,16,90,526,153872
RF01758,sucA-II RNA,218,17,90,799,174156
RF01760,traJ-II RNA,104,47,200,563,57532
RF01764,yjdF RNA,101,62,370,2165,240283
RF01766,cspA thermoregulator,428,15,1612,3895,1669264
RF01769,Enterobacteria greA leader,124,25,124,496,61157
RF01770,Gammaprotebacteria rimP leader,111,46,286,759,82287
RF01771,Enterobacteria rnk leader,109,13,49,173,18872
RF01772,Pseudomonas rnk leader,108,15,53,450,47321
RF01794,sok antitoxin (CssrC),157,91,293,944,148144
RF01796,Fumarate/nitrate reductase regulator sRNA,119,16,124,529,62127
RF01808,MicX Vibrio cholerae sRNA,194,10,40,158,30464
RF01820,RNA Staph. aureus E (RoxS),112,15,132,613,70230
RF01830,Salmonella enterica Typhi npcRNA 44,107,34,455,789,91907
RF01849,Alphaproteobacteria transfer-messenger RNA,338,111,942,6337,2276975
RF01851,Cyanobacteria transfer-messenger RNA,288,27,48,461,131073
RF01854,Bacterial large signal recognition particle RNA,255,92,1143,11373,3008730
RF01857,Archaeal signal recognition particle RNA,318,53,344,2515,787265
RF01859,Phenylalanine leader peptide,125,71,367,1393,172772
RF01867,caulobacter sRNA CC2171,159,13,68,532,89386
RF01999,Group II catalytic intron D1-D4-2,118,144,822,4446,527136
RF02001,Group II catalytic intron D1-D4-3,171,406,3545,15420,2672122
RF02003,Group II catalytic intron D1-D4-4,138,90,620,3649,510775
RF02004,Group II catalytic intron D1-D4-5,201,139,586,1623,325434
RF02005,Group II catalytic intron D1-D4-6,225,174,1363,6870,1603148
RF02012,Group II catalytic intron D1-D4-7,148,244,1048,2416,360182
RF02030,tp2,114,24,128,475,56829
RF02032,"Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA",436,35,58,86,39873
RF02033,HNH endonuclease-associated RNA and ORF (HEARO) RNA,224,139,1288,3102,711367
RF02034,IMES-1 RNA motif,191,172,176,166,31720
RF02035,IMES-2 RNA motif,141,320,327,583,82205
RF02036,IMES-3 RNA motif,149,32,32,12,1770
RF02052,Enterobacterial sRNA STnc630,166,10,20,13,2144
RF02076,Gammaproteobacterial sRNA STnc100,206,24,135,129,26130
RF02079,Enterobacterial sRNA STnc180,217,10,31,128,27341
RF02081,Enterobacterial sRNA STnc550,388,11,75,241,93654
RF02084,Enterobacteria sRNA STnc130,135,13,42,160,21764
RF02100,Translational regulator of tfoXVC,101,10,52,187,18669
RF02111,IS009,198,11,23,135,26674
RF02144,rsmX,114,16,112,807,90843
RF02194,Bacterial antisense RNA HPnc0260,156,31,178,35,5555
RF02230,Proteobacterial sRNA sX11,138,10,25,137,19718
RF02232,Xanthomonadaceae sRNA sX13,115,12,61,349,39743
RF02234,Xanthomonadaceae sRNA sX15,159,14,38,213,33862
RF02235,Xanthomonadaceae sRNA asX1,115,15,64,346,39492
RF02342,Alphaproteobacterial sRNA ar7,146,29,130,760,110460
RF02343,Alphaproteobacterial sRNA ar9,149,28,151,753,111163
RF02344,Alphaproteobacterial ar14,123,118,616,3433,417561
RF02345,Alphaproteobacterial ar15,113,61,302,1212,136783
RF02346,Alphaproteobacterial sRNA ar35,144,13,194,314,44653
RF02347,Alphaproteobacterial sRNA ar45,148,36,247,925,137705
RF02354,Bradyrhizobiaceae sRNA BjrC80,162,15,44,272,43569
RF02355,Bradyrhizobiaceae sRNA BjrC174,201,15,74,348,70401
RF02356,Alphaproteobacterial sRNA BjrC1505,140,25,190,1268,179070
RF02375,Aar sRNA,191,13,43,127,24158
RF02414,Listeria sRNA rli60,191,11,34,79,15999
RF02420,Burkholderia sRNA Bp1_Cand612_SIPHT,100,11,65,251,25145
RF02421,Burkholderia sRNA Bp1_Cand684_SIPHT,113,14,172,156,17588
RF02422,Burkholderia sRNA Bp1_Cand738_SIPHT,208,21,75,241,50199
RF02423,Burkholderia sRNA Bp1_Cand871_SIPHT,230,15,74,258,58474
RF02424,Burkholderia sRNA Bp2_Cand287_SIPHT,174,14,53,162,28646
RF02431,Streptococcus sRNA SpF22,140,22,31,204,29381
RF02432,Streptococcus sRNA SpF25,102,20,35,211,21452
RF02434,Streptococcus sRNA SpF39,109,13,26,29,3133
RF02437,Streptococcus sRNA SpF44,102,12,20,193,18631
RF02446,Streptococcus sRNA SpR18,132,23,98,166,21736
RF02447,Streptococcus sRNA SpR19,123,23,46,326,40526
RF02449,Bacillus sRNA ncr1015,121,16,64,238,28148
RF02452,Bacillus sRNA ncr1575,215,29,108,346,73098
RF02469,Actinobacteria sRNA Ms_IGR-7,118,14,250,520,61265
RF02471,Actinobacteria sRNA Ms_IGR-5,184,21,564,1853,378314
RF02496,Rhizobiales sRNA Atu_At1,108,33,168,908,98178
RF02500,EcpR1,113,32,198,1174,129574
RF02502,Rhizobiales sRNA Atu_C8,122,27,194,1137,137533
RF02514,5' ureB small RNA,292,13,2655,14499,4192710
RF02526,Streptococcus sRNA SSRC34,128,16,38,43,5562
RF02673,Streptomyces sRNA 4677,247,12,294,808,200825
RF02680,PreQ1-III riboswitch,102,31,116,97,9733
RF02687,RAGATH-8 RNA,276,69,72,15,4136
RF02840,Enterococcus sRNA 68 (Lacto-3 RNA),124,78,203,236,30737
RF02916,atpB RNA,128,72,160,220,28179
RF02919,ilvB-OMG RNA,210,28,34,84,17870
RF02920,Fusobacteriales-1 RNA,114,13,22,54,6311
RF02921,RT-14 RNA,144,143,195,210,31359
RF02928,Actinomyces-1 RNA,110,236,285,171,18827
RF02932,Betaproteobacteria-1 RNA,120,102,129,158,18908
RF02941,COG3943 RNA,108,27,27,60,6410
RF02942,Clostridiales-3 RNA,262,157,173,73,19300
RF02943,Bacteroidales-2 RNA,392,43,46,24,9843
RF02951,DABA-DC-AT RNA,151,126,181,232,36239
RF02955,EGFOA RNA,107,73,99,40,4727
RF02957,EFASI RNA,134,448,553,390,53087
RF02958,drum RNA,114,464,518,488,55254
RF02960,DUF2800 RNA,158,155,168,163,25778
RF02962,DUF3800-III RNA,108,55,73,65,7027
RF02966,DUF3268 RNA,120,108,117,118,14016
RF02969,DUF3800-I RNA,115,321,365,212,24189
RF02972,engA RNA,101,154,180,83,8621
RF02978,folP RNA,102,28,33,20,2027
RF02981,FTHFS RNA,117,27,31,48,5655
RF02982,gltS RNA,105,108,146,159,16664
RF02986,FuFi-1 RNA,181,170,182,79,18013
RF02994,IMPDH RNA,109,81,89,45,4855
RF02995,IMES-5 RNA,150,52,52,40,5970
RF03000,LOOT RNA,121,368,698,850,102803
RF03005,lysM-TM7 RNA,140,129,138,113,16305
RF03011,Methylophilales-1 RNA,103,14,25,74,7527
RF03016,RT-12 RNA,122,42,48,45,5240
RF03018,RT-15 RNA,193,64,94,206,38886
RF03019,RT-16 RNA,158,104,116,81,14542
RF03022,RT-10 RNA,127,113,119,38,5162
RF03025,RT-4 RNA,122,47,50,41,4832
RF03026,RT-5 RNA,103,71,82,711,74991
RF03028,RT-7 RNA,191,54,58,58,11910
RF03037,PAGEV RNA,196,86,92,38,8226
RF03041,poplar-1 RNA,141,22,22,237,33109
RF03045,proV RNA,149,16,28,86,12630
RF03046,Pseudomonadales-1 RNA,164,54,73,77,12535
RF03062,xerDC RNA,130,72,76,62,8000
RF03063,Streptomyces-metK RNA,117,38,229,873,102712
RF03066,COG3610-DE RNA,116,59,75,58,6765
RF03068,RT-3 RNA,148,231,244,125,18836
RF03069,malK-I RNA,179,322,349,1105,199378
RF03072,raiA RNA,209,488,736,2554,597276
RF03076,Streptomyces-metH RNA,122,43,237,893,112144
RF03077,RT-2 RNA,222,195,210,292,67033
RF03079,MISL RNA,747,44,49,251,194788
RF03087,ROOL RNA,580,290,316,201,116339
RF03108,Methylosinus-1 RNA,212,12,20,39,8686
RF03112,Staphylococcus-1 RNA,127,21,22,94,12067
RF03155,TD-1 RNA,120,28,137,358,44059
RF03166,glycine-GGAnGA riboswitch,180,26,48,1477,285340
RF03531,Clostridioides difficile sRNA included into helicase gene,101,24,62,429,42390
RF03532,Cis-regulator of HTH transcription factor,243,57,60,281,65589
RF03534,Staphylococcus sRNA71 small RNA,107,13,14,39,4034
RF04182,GibS sRNA,142,13,33,98,13890
RF04183,Bacteroidales small SRP,107,31,642,9009,962756
RF04189,icd-II ncRNA motif,133,15,18,85,10871
RF04192,carA ncRNA motif,202,35,37,109,21870