Cluster Size TaxId Genome 0 5 1769 Mycobacterium leprae 0 5 83332 Mycobacterium tuberculosis H37Rv 0 5 196627 Corynebacterium glutamicum ATCC 13032 0 5 83331 Mycobacterium tuberculosis CDC1551 0 5 196164 Corynebacterium efficiens YS-314 1 19 36870 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 1 19 90370 Salmonella enterica subsp. enterica serovar Typhi 1 19 209261 Salmonella enterica subsp. enterica serovar Typhi Ty2 1 19 199310 Escherichia coli CFT073 1 19 99287 Salmonella typhimurium LT2 1 19 216895 Vibrio vulnificus CMCP6 1 19 198804 Buchnera aphidicola str. Sg (Schizaphis graminum) 1 19 198214 Shigella flexneri 2a str. 301 1 19 224915 Buchnera aphidicola str. Bp (Baizongia pistaciae) 1 19 211586 Shewanella oneidensis MR-1 1 19 155864 Escherichia coli O157:H7 EDL933 1 19 107806 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1 19 666 Vibrio cholerae 1 19 187410 Yersinia pestis KIM 1 19 83334 Escherichia coli O157:H7 1 19 83333 Escherichia coli K12 1 19 214092 Yersinia pestis CO92 1 19 198215 Shigella flexneri 2a str. 2457T 1 19 223926 Vibrio parahaemolyticus RIMD 2210633 10 7 204722 Brucella suis 1330 10 7 180835 Agrobacterium tumefaciens str. C58 (U. Washington) 10 7 382 Sinorhizobium meliloti 10 7 375 Bradyrhizobium japonicum 10 7 29459 Brucella melitensis 10 7 381 Mesorhizobium loti 10 7 181661 Agrobacterium tumefaciens str. C58 (Cereon) 100 1 220668 Lactobacillus plantarum WCFS1 105 1 2190 Methanocaldococcus jannaschii 106 1 190304 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 108 2 192952 Methanosarcina mazei Goe1 108 2 188937 Methanosarcina acetivorans C2A 109 1 64091 Halobacterium sp. NRC-1 11 3 1488 Clostridium acetobutylicum 11 3 212717 Clostridium tetani E88 11 3 1502 Clostridium perfringens 113 1 747 Pasteurella multocida 114 2 782 Rickettsia prowazekii 114 2 781 Rickettsia conorii 118 1 160 Treponema pallidum 122 1 119072 Thermoanaerobacter tengcongensis 13 4 203267 Tropheryma whipplei str. Twist 13 4 100226 Streptomyces coelicolor A3(2) 13 4 227882 Streptomyces avermitilis MA-4680 13 4 218496 Tropheryma whipplei TW08/27 14 1 28232 Geobacter metallireducens 15 1 84588 Synechococcus sp. WH 8102 16 9 1423 Bacillus subtilis 16 9 176280 Staphylococcus epidermidis ATCC 12228 16 9 86665 Bacillus halodurans 16 9 226900 Bacillus cereus ATCC 14579 16 9 196620 Staphylococcus aureus subsp. aureus MW2 16 9 158878 Staphylococcus aureus subsp. aureus Mu50 16 9 198094 Bacillus anthracis str. Ames 16 9 158879 Staphylococcus aureus subsp. aureus N315 16 9 182710 Oceanobacillus iheyensis 18 1 1360 Lactococcus lactis subsp. lactis 2 1 190192 Methanopyrus kandleri AV19 22 2 85962 Helicobacter pylori 26695 22 2 85963 Helicobacter pylori J99 24 1 227377 Coxiella burnetii RSA 493 32 1 2107 Mycoplasma pulmonis 35 6 115713 Chlamydophila pneumoniae CWL029 35 6 83560 Chlamydia muridarum 35 6 115711 Chlamydophila pneumoniae AR39 35 6 813 Chlamydia trachomatis 35 6 227941 Chlamydophila caviae GPIC 35 6 138677 Chlamydophila pneumoniae J138 36 3 2097 Mycoplasma genitalium 36 3 233150 Mycoplasma gallisepticum R 36 3 2104 Mycoplasma pneumoniae 37 2 169963 Listeria monocytogenes EGD-e 37 2 1642 Listeria innocua 38 2 122587 Neisseria meningitidis Z2491 38 2 122586 Neisseria meningitidis MC58 4 3 160488 Pseudomonas putida KT2440 4 3 223283 Pseudomonas syringae pv. tomato str. DC3000 4 3 208964 Pseudomonas aeruginosa PAO1 40 1 63363 Aquifex aeolicus 48 2 2287 Sulfolobus solfataricus 48 2 111955 Sulfolobus tokodaii 5 1 197221 Thermosynechococcus elongatus BP-1 51 3 53953 Pyrococcus horikoshii 51 3 186497 Pyrococcus furiosus DSM 3638 51 3 29292 Pyrococcus abyssi 52 1 197 Campylobacter jejuni 56 1 881 Desulfovibrio vulgaris 57 1 189518 Leptospira interrogans serovar lai str. 56601 6 1 56636 Aeropyrum pernix 61 1 226185 Enterococcus faecalis V583 63 1 194439 Chlorobium tepidum TLS 65 4 190485 Xanthomonas campestris pv. campestris str. ATCC 33913 65 4 190486 Xanthomonas axonopodis pv. citri str. 306 65 4 160492 Xylella fastidiosa 9a5c 65 4 183190 Xylella fastidiosa Temecula1 66 1 226186 Bacteroides thetaiotaomicron VPI-5482 67 1 103690 Nostoc sp. PCC 7120 68 1 1299 Deinococcus radiodurans 69 1 2130 Ureaplasma urealyticum 70 1 187420 Methanothermobacter thermautotrophicus str. Delta H 71 1 71421 Haemophilus influenzae Rd KW20 8 1 2234 Archaeoglobus fulgidus 80 2 50339 Thermoplasma volcanium 80 2 2303 Thermoplasma acidophilum 83 1 224324 Aquifex aeolicus VF5 86 1 305 Ralstonia solanacearum 88 1 1148 Synechocystis sp. PCC 6803 89 1 13773 Pyrobaculum aerophilum 9 7 210007 Streptococcus mutans UA159 9 7 193567 Streptococcus pyogenes SSI-1 9 7 208435 Streptococcus agalactiae 2603V/R 9 7 160490 Streptococcus pyogenes M1 GAS 9 7 198466 Streptococcus pyogenes MGAS315 9 7 186103 Streptococcus pyogenes MGAS8232 9 7 211110 Streptococcus agalactiae NEM316 91 1 190650 Caulobacter crescentus CB15 92 1 224326 Borrelia burgdorferi B31 93 1 228410 Nitrosomonas europaea ATCC 19718 94 2 171101 Streptococcus pneumoniae R6 94 2 170187 Streptococcus pneumoniae TIGR4 95 1 28227 Mycoplasma penetrans 96 1 206672 Bifidobacterium longum NCC2705 98 1 2336 Thermotoga maritima