SupplementaryTable1: Per sample sequencing characteristics. This table lists sample names, chromosome positions, and mutation details for various samples. Columns: SAMPLE_NAME: Description of the sample, including tissue type and brush/tissue differentiation. CHROM: Chromosome where the mutation is located. POS: Position of the mutation on the chromosome. REF: Reference nucleotide at the mutation position. ALT: Alternate nucleotide at the mutation position. GENE_NAME: Name of the gene where the mutation occurs. AACHANGE: Amino acid change due to the mutation (if applicable). MUTATION_TYPE: Type of mutation (e.g., INTRON, MISSENSE). REF_count: Number of reads supporting the reference nucleotide. ALT_count: Number of reads supporting the alternate nucleotide. SAMPLE_NAME CHROM POS REF ALT GENE_NAME AACHANGE MUTATION_TYPE REF_count ALT_count A - Normal Buccal Tissue chr1 40303476 C T COL9A2 INTRON 290 53 A - Normal Buccal Tissue chr1 98915038 A T PLPPR5 INTRON 26 4 A - Normal Buccal Tissue chr1 153218298 G A PRR9 p.V52I MISSENSE 244 53 A - Normal Buccal Tissue chr1 180020775 G A CEP350 p.D1001N MISSENSE 152 33 A - Normal Buccal Tissue chr1 215814018 A G USH2A INTRON 17 4 A - Normal Buccal Tissue chr1 216199505 T A USH2A INTRON 25 4 A - Normal Buccal Tissue chr1 237550599 G A RYR2 p.R1041Q MISSENSE 173 39 A - Normal Buccal Tissue chr2 21003348 A G APOB INTRON 61 28 A - Normal Buccal Tissue chr2 38745030 G C SRSF7 THREE PRIME UTR 64 16 A - Normal Buccal Tissue chr2 56372228 C T CCDC85A INTRON 80 29 A - Normal Buccal Tissue chr2 72933934 G A EMX1 p.D285N MISSENSE 242 62 A - Normal Buccal Tissue chr2 99402659 T C REV1 p.I1176V MISSENSE 65 13 A - Normal Buccal Tissue chr3 15679617 A G ANKRD28 INTRON 124 29 A - Normal Buccal Tissue chr3 51443843 A G DCAF1 p.Y146H MISSENSE 188 29 A - Normal Buccal Tissue chr3 53233168 G A TKT p.R246* NONSENSE 62 16 A - Normal Buccal Tissue chr3 62532985 C T CADPS p.R726Q MISSENSE 328 62 A - Normal Buccal Tissue chr3 64099327 C T PRICKLE2 p.S753S SILENT 219 57 A - Normal Buccal Tissue chr3 67518477 C T SUCLG2 INTRON 59 11 A - Normal Buccal Tissue chr3 113567630 A G SIDT1 p.I145M MISSENSE 107 20 A - Normal Buccal Tissue chr3 122795200 C T SLC49A4 p.S3F MISSENSE 19 5 A - Normal Buccal Tissue chr3 143989924 A G DIPK2A THREE PRIME UTR 93 20 A - Normal Buccal Tissue chr3 156523868 G A KCNAB1 p.G334G SILENT 90 16 A - Normal Buccal Tissue chr3 172956749 C T SPATA16 p.A337T MISSENSE 157 40 A - Normal Buccal Tissue chr3 184384841 C T CHRD INTRON 40 14 A - Normal Buccal Tissue chr4 41745985 G A PHOX2B p.A256V MISSENSE 53 12 A - Normal Buccal Tissue chr5 1272238 C T TERT p.V777M MISSENSE 303 70 A - Normal Buccal Tissue chr5 33445217 T A TARS1 INTRON 5 4 A - Normal Buccal Tissue chr5 118561053 C A LINC02208 RNA 62 14 A - Normal Buccal Tissue chr5 170293385 G A LCP2 INTRON 214 55 A - Normal Buccal Tissue chr5 178994495 G A GRM6 p.G150G SILENT 91 20 A - Normal Buccal Tissue chr6 70852580 G A SMAP1 p.T208T SILENT 191 45 A - Normal Buccal Tissue chr6 111389065 C G REV3L INTRON 44 12 A - Normal Buccal Tissue chr6 116279390 C T TSPYL1 p.G147G SILENT 365 48 A - Normal Buccal Tissue chr6 143777369 G T PHACTR2 p.R453I MISSENSE 86 20 A - Normal Buccal Tissue chr6 160731381 C G PLG INTRON 15 4 A - Normal Buccal Tissue chr7 104736591 G A LHFPL3 INTRON 21 4 A - Normal Buccal Tissue chr7 106883055 C T PIK3CG p.D884D SILENT 67 12 A - Normal Buccal Tissue chr8 100264599 A T RNF19A INTRON 79 16 A - Normal Buccal Tissue chr8 109342959 C T ENY2 INTRON 34 11 A - Normal Buccal Tissue chr8 109507678 T G PKHD1L1 p.S3670S SILENT 277 47 A - Normal Buccal Tissue chr8 143982962 G A PARP10 p.D833D SILENT 93 13 A - Normal Buccal Tissue chr8 144496863 G A PPP1R16A FIVE PRIME UTR 17 3 A - Normal Buccal Tissue chr10 29462486 C T SVIL INTRON 121 21 A - Normal Buccal Tissue chr10 112409746 A G ACSL5 INTRON 89 13 A - Normal Buccal Tissue chr10 121971132 C T NSMCE4A INTRON 18 6 A - Normal Buccal Tissue chr11 9577862 C T WEE1 INTRON 220 36 A - Normal Buccal Tissue chr11 102692110 C T MMP27 INTRON 19 5 A - Normal Buccal Tissue chr11 130427962 C T ADAMTS8 p.E109K MISSENSE 141 38 A - Normal Buccal Tissue chr12 41573301 C A PDZRN4 p.A841E MISSENSE 334 62 A - Normal Buccal Tissue chr12 45927339 G A SCAF11 p.R788C MISSENSE 238 55 A - Normal Buccal Tissue chr12 45931515 C A SCAF11 p.E278* NONSENSE 29 6 A - Normal Buccal Tissue chr12 69589505 G T CCT2 p.R156L MISSENSE 44 7 A - Normal Buccal Tissue chr12 102866641 C T PAH p.R150H MISSENSE 128 28 A - Normal Buccal Tissue chr12 106711386 C T RFX4 INTRON 113 25 A - Normal Buccal Tissue chr12 128945549 C T GLT1D1 INTRON 50 5 A - Normal Buccal Tissue chr12 131207428 G T LINC01257 RNA 20 9 A - Normal Buccal Tissue chr13 101575323 G T ITGBL1 INTRON 43 10 A - Normal Buccal Tissue chr14 22544972 G T TRAJ1 FIVE PRIME FLANK 97 27 A - Normal Buccal Tissue chr14 54776331 G C SAMD4A INTRON 199 42 A - Normal Buccal Tissue chr14 60115862 T G PCNX4 INTRON 118 32 A - Normal Buccal Tissue chr14 73974870 G A ENTPD5 INTRON 15 7 A - Normal Buccal Tissue chr14 99722074 G A CYP46A1 INTRON 89 13 A - Normal Buccal Tissue chr15 45147869 C T DUOX1 INTRON 107 18 A - Normal Buccal Tissue chr15 68332377 G T ITGA11 p.G509G SILENT 288 51 A - Normal Buccal Tissue chr16 61655432 A T CDH8 INTRON 93 22 A - Normal Buccal Tissue chr16 67661881 C T PARD6A INTRON 143 46 A - Normal Buccal Tissue chr16 81363937 C A GAN p.V410V SILENT 167 41 A - Normal Buccal Tissue chr18 80037213 G T RBFA INTRON 33 4 A - Normal Buccal Tissue chr20 17616714 C A RRBP1 INTRON 93 15 A - Normal Buccal Tissue chr20 45110658 C A WFDC5 p.R68L MISSENSE 218 59 A - Normal Buccal Tissue chr20 62332738 C T LAMA5 INTRON 44 15 A - Normal Buccal Tissue chr21 30616782 G C KRTAP6-1 FIVE PRIME FLANK 64 13 A - Normal Buccal Tissue chr22 23181620 C T BCR p.G220G SILENT 289 32 A - Normal Buccal Tissue chrX 8623734 G T ANOS1 INTRON 39 11 A - Normal Buccal Tissue chrX 18944897 A T PHKA2 INTRON 24 5 A - Normal Buccal Tissue chrX 18984173 G A PHKA2 FIVE PRIME FLANK 12 4 A - Normal Buccal Tissue chrX 38301367 G A AF241726.2 INTRON 80 8 A - Normal Buccal Tissue chrX 81202049 G C HMGN5 FIVE PRIME FLANK 101 18 A - Normal Buccal Tissue chrX 109475503 C T GUCY2F p.G145E MISSENSE 252 72 A - Normal Buccal Tissue chrX 119791797 G A RPL39 FIVE PRIME FLANK 21 10 A - Normal Buccal Tissue chrX 134413785 G T PHF6 INTRON 113 18 A - Normal Buccal Tissue chrX 154486144 C A UBL4A INTRON 148 30 A - Normal Buccal Tissue chr2 43874517 A C ABCG8 INTRON 64 2 A - Normal Buccal Tissue chr5 179567626 C T RUFY1 INTRON 22 1 A - Normal Buccal Tissue chr7 93426570 C T CALCR p.R404H MISSENSE 318 2 A - Normal Buccal Tissue chr12 6581539 A C CHD4 INTRON 207 2 A - Normal Buccal Tissue chrX 32386518 A G DMD INTRON 58 16 A - Normal Buccal Tissue chrX 50156230 G A PYY3 RNA 146 1 A - Normal Buccal Tissue chr1 228274197 C T OBSCN p.C2187C SILENT 183 1 A - Normal Buccal Tissue chr5 139418663 C T DNAJC18 INTRON 99 2 A - Normal Buccal Tissue chr7 144004310 T C OR6B1 p.I105T MISSENSE 481 1 A - Normal Buccal Tissue chr8 67257698 G T ARFGEF1 INTRON 132 1 A - Normal Buccal Tissue chr10 102066548 G A HPS6 p.P358P SILENT 532 1 A - Normal Buccal Tissue chr11 18710317 G A IGSF22 INTRON 192 1 A - Normal Buccal Tissue chr11 69054122 C T TPCN2 INTRON 113 1 A - Normal Buccal Tissue chr17 35183515 C T UNC45B p.A823V MISSENSE 142 1 A - Normal Buccal Tissue chr21 45405314 C G COL18A1 INTRON 41 9 A - Normal Buccal Tissue chr21 45405320 C T COL18A1 INTRON 40 9 A - Normal Buccal Tissue chr1 11944438 C A PLOD1 INTRON 40 1 A - Normal Buccal Tissue chr3 113327795 C A CFAP44 p.D1381Y MISSENSE 90 1 A - Normal Buccal Tissue chr8 71215664 G A EYA1 p.T475T SILENT 296 1 A - Normal Buccal Tissue chrX 34943541 C T FAM47B p.P237L MISSENSE 351 1 A - Normal Buccal Tissue chr5 6633775 C T SRD5A1 p.P67S MISSENSE 187 1 A - Normal Buccal Tissue chr5 131976546 A G ACSL6 INTRON 36 1 A - Normal Buccal Tissue chr7 141838035 G T PRSS37 p.I85I SILENT 463 1 A - Normal Buccal Tissue chr21 35047551 A T RUNX1 INTRON 17 6 B - Normal Buccal Brush chr1 40303476 C T COL9A2 INTRON 287 16 B - Normal Buccal Brush chr1 98915038 A T PLPPR5 INTRON 43 4 B - Normal Buccal Brush chr1 153218298 G A PRR9 p.V52I MISSENSE 260 3 B - Normal Buccal Brush chr1 180020775 G A CEP350 p.D1001N MISSENSE 210 11 B - Normal Buccal Brush chr1 215814018 A G USH2A INTRON 20 1 B - Normal Buccal Brush chr1 216199505 T A USH2A INTRON 45 3 B - Normal Buccal Brush chr1 237550599 G A RYR2 p.R1041Q MISSENSE 192 9 B - Normal Buccal Brush chr2 21003348 A G APOB INTRON 65 3 B - Normal Buccal Brush chr2 38745030 G C SRSF7 THREE PRIME UTR 102 1 B - Normal Buccal Brush chr2 72933934 G A EMX1 p.D285N MISSENSE 256 17 B - Normal Buccal Brush chr2 99402659 T C REV1 p.I1176V MISSENSE 60 2 B - Normal Buccal Brush chr3 15679617 A G ANKRD28 INTRON 135 3 B - Normal Buccal Brush chr3 51443843 A G DCAF1 p.Y146H MISSENSE 205 5 B - Normal Buccal Brush chr3 53233168 G A TKT p.R246* NONSENSE 74 4 B - Normal Buccal Brush chr3 62532985 C T CADPS p.R726Q MISSENSE 300 2 B - Normal Buccal Brush chr3 64099327 C T PRICKLE2 p.S753S SILENT 212 19 B - Normal Buccal Brush chr3 67518477 C T SUCLG2 INTRON 54 2 B - Normal Buccal Brush chr3 113567630 A G SIDT1 p.I145M MISSENSE 111 5 B - Normal Buccal Brush chr3 143989924 A G DIPK2A THREE PRIME UTR 118 7 B - Normal Buccal Brush chr3 156523868 G A KCNAB1 p.G334G SILENT 114 3 B - Normal Buccal Brush chr3 172956749 C T SPATA16 p.A337T MISSENSE 144 7 B - Normal Buccal Brush chr3 184384841 C T CHRD INTRON 53 1 B - Normal Buccal Brush chr4 41745985 G A PHOX2B p.A256V MISSENSE 40 6 B - Normal Buccal Brush chr5 1272238 C T TERT p.V777M MISSENSE 342 18 B - Normal Buccal Brush chr5 33445217 T A TARS1 INTRON 15 1 B - Normal Buccal Brush chr5 118561053 C A LINC02208 RNA 54 3 B - Normal Buccal Brush chr5 170293385 G A LCP2 INTRON 241 14 B - Normal Buccal Brush chr5 178994495 G A GRM6 p.G150G SILENT 87 3 B - Normal Buccal Brush chr6 70852580 G A SMAP1 p.T208T SILENT 223 10 B - Normal Buccal Brush chr6 111389065 C G REV3L INTRON 51 5 B - Normal Buccal Brush chr6 116279390 C T TSPYL1 p.G147G SILENT 346 8 B - Normal Buccal Brush chr6 143777369 G T PHACTR2 p.R453I MISSENSE 106 5 B - Normal Buccal Brush chr7 104736591 G A LHFPL3 INTRON 54 3 B - Normal Buccal Brush chr7 106883055 C T PIK3CG p.D884D SILENT 70 3 B - Normal Buccal Brush chr8 100264599 A T RNF19A INTRON 82 1 B - Normal Buccal Brush chr8 109342959 C T ENY2 INTRON 46 10 B - Normal Buccal Brush chr8 109507678 T G PKHD1L1 p.S3670S SILENT 254 14 B - Normal Buccal Brush chr8 143982962 G A PARP10 p.D833D SILENT 136 2 B - Normal Buccal Brush chr10 29462486 C T SVIL INTRON 138 10 B - Normal Buccal Brush chr10 112409746 A G ACSL5 INTRON 109 5 B - Normal Buccal Brush chr11 9577862 C T WEE1 INTRON 307 6 B - Normal Buccal Brush chr11 130427962 C T ADAMTS8 p.E109K MISSENSE 107 5 B - Normal Buccal Brush chr12 41573301 C A PDZRN4 p.A841E MISSENSE 357 9 B - Normal Buccal Brush chr12 45927339 G A SCAF11 p.R788C MISSENSE 282 18 B - Normal Buccal Brush chr12 45931515 C A SCAF11 p.E278* NONSENSE 18 1 B - Normal Buccal Brush chr12 69589505 G T CCT2 p.R156L MISSENSE 67 4 B - Normal Buccal Brush chr12 102866641 C T PAH p.R150H MISSENSE 128 5 B - Normal Buccal Brush chr12 106711386 C T RFX4 INTRON 129 3 B - Normal Buccal Brush chr12 131207428 G T LINC01257 RNA 35 5 B - Normal Buccal Brush chr13 101575323 G T ITGBL1 INTRON 76 3 B - Normal Buccal Brush chr14 22544972 G T TRAJ1 FIVE PRIME FLANK 82 4 B - Normal Buccal Brush chr14 54776331 G C SAMD4A INTRON 160 10 B - Normal Buccal Brush chr14 60115862 T G PCNX4 INTRON 178 8 B - Normal Buccal Brush chr14 73974870 G A ENTPD5 INTRON 37 2 B - Normal Buccal Brush chr14 99722074 G A CYP46A1 INTRON 101 2 B - Normal Buccal Brush chr15 45147869 C T DUOX1 INTRON 139 2 B - Normal Buccal Brush chr15 68332377 G T ITGA11 p.G509G SILENT 359 17 B - Normal Buccal Brush chr16 61655432 A T CDH8 INTRON 88 4 B - Normal Buccal Brush chr16 67661881 C T PARD6A INTRON 180 3 B - Normal Buccal Brush chr16 81363937 C A GAN p.V410V SILENT 199 10 B - Normal Buccal Brush chr18 80037213 G T RBFA INTRON 51 2 B - Normal Buccal Brush chr20 17616714 C A RRBP1 INTRON 97 6 B - Normal Buccal Brush chr20 45110658 C A WFDC5 p.R68L MISSENSE 293 20 B - Normal Buccal Brush chr22 23181620 C T BCR p.G220G SILENT 386 5 B - Normal Buccal Brush chrX 8623734 G T ANOS1 INTRON 33 3 B - Normal Buccal Brush chrX 18944897 A T PHKA2 INTRON 25 1 B - Normal Buccal Brush chrX 81202049 G C HMGN5 FIVE PRIME FLANK 136 3 B - Normal Buccal Brush chrX 109475503 C T GUCY2F p.G145E MISSENSE 260 14 B - Normal Buccal Brush chrX 134413785 G T PHF6 INTRON 153 5 B - Normal Buccal Brush chrX 154486144 C A UBL4A INTRON 185 1 B - Normal Buccal Brush chr1 1966448 C T CFAP74 p.G442R MISSENSE 103 4 B - Normal Buccal Brush chr1 7467685 G C CAMTA1 INTRON 191 6 B - Normal Buccal Brush chr1 23814129 C A HMGCL INTRON 150 11 B - Normal Buccal Brush chr1 24929092 T A RUNX3 INTRON 279 9 B - Normal Buccal Brush chr1 36323122 C T EVA1B INTRON 151 3 B - Normal Buccal Brush chr1 52055158 T C TXNDC12 FIVE PRIME UTR 156 9 B - Normal Buccal Brush chr1 152709412 G A LCE4A THREE PRIME UTR 221 5 B - Normal Buccal Brush chr1 160281985 T A AL139011.2 INTRON 140 7 B - Normal Buccal Brush chr1 200998415 C A KIF21B p.Q682H MISSENSE 156 3 B - Normal Buccal Brush chr1 201203712 G A IGFN1 INTRON 59 3 B - Normal Buccal Brush chr1 205169761 A G DSTYK p.N242N SILENT 196 4 B - Normal Buccal Brush chr1 240092447 C T FMN2 p.S113F MISSENSE 348 6 B - Normal Buccal Brush chr2 26373590 G C SELENOI p.G178G SILENT 228 9 B - Normal Buccal Brush chr2 29073067 G T PCARE p.Q399K MISSENSE 271 6 B - Normal Buccal Brush chr2 43874517 A C ABCG8 INTRON 61 5 B - Normal Buccal Brush chr2 72731181 A G EXOC6B p.V131A MISSENSE 118 3 B - Normal Buccal Brush chr2 79085600 G A REG1B p.R109C MISSENSE 69 3 B - Normal Buccal Brush chr2 84548414 C T DNAH6 p.T438M MISSENSE 92 7 B - Normal Buccal Brush chr2 96267721 G A CIAO1 p.V129I MISSENSE 291 5 B - Normal Buccal Brush chr2 105399158 G T FHL2 FIVE PRIME UTR 252 7 B - Normal Buccal Brush chr2 105399175 G T FHL2 FIVE PRIME UTR 244 7 B - Normal Buccal Brush chr2 169950001 A G UBR3 p.T1161A MISSENSE 173 3 B - Normal Buccal Brush chr2 178537193 T G TTN p.N30738H MISSENSE 347 6 B - Normal Buccal Brush chr2 181494728 G T ITGA4 p.E419* NONSENSE 247 6 B - Normal Buccal Brush chr2 186505896 A C ZC3H15 INTRON 74 4 B - Normal Buccal Brush chr3 25596388 T G RARB INTRON 122 6 B - Normal Buccal Brush chr3 38728932 G A SCN10A INTRON 165 13 B - Normal Buccal Brush chr3 38789030 G T SCN10A p.F132L MISSENSE 237 5 B - Normal Buccal Brush chr3 42664436 C T ZBTB47 p.V694V SILENT 136 8 B - Normal Buccal Brush chr3 52122355 G A POC1A INTRON 79 4 B - Normal Buccal Brush chr3 58269187 A T ABHD6 INTRON 82 3 B - Normal Buccal Brush chr3 98470051 C G OR5K1 p.H159D MISSENSE 433 7 B - Normal Buccal Brush chr3 122700915 C T PARP14 p.P787P SILENT 405 6 B - Normal Buccal Brush chr3 129575839 C A PLXND1 p.C788F MISSENSE 249 7 B - Normal Buccal Brush chr3 193310589 G C ATP13A5 INTRON 245 6 B - Normal Buccal Brush chr3 194397174 A G GP5 p.L370P MISSENSE 92 5 B - Normal Buccal Brush chr4 3316308 C G RGS12 p.C46W MISSENSE 308 6 B - Normal Buccal Brush chr4 7704256 G A SORCS2 p.E614K MISSENSE 163 3 B - Normal Buccal Brush chr4 26430756 G T RBPJ p.G369V MISSENSE 182 4 B - Normal Buccal Brush chr4 42893362 G A GRXCR1 p.V32V SILENT 251 6 B - Normal Buccal Brush chr5 1814477 C T NDUFS6 INTRON 322 6 B - Normal Buccal Brush chr5 21854722 C T CDH12 p.V199I MISSENSE 236 4 B - Normal Buccal Brush chr5 81206945 A G RASGRF2 INTRON 242 6 B - Normal Buccal Brush chr5 123100026 C T PRDM6 INTRON 75 3 B - Normal Buccal Brush chr5 160602774 C T ATP10B INTRON 89 6 B - Normal Buccal Brush chr5 179567626 C T RUFY1 INTRON 41 5 B - Normal Buccal Brush chr6 49737379 C T CRISP3 p.V19V SILENT 101 8 B - Normal Buccal Brush chr6 81749939 A T TENT5A p.V362E MISSENSE 338 19 B - Normal Buccal Brush chr6 109267736 C T CCDC162P RNA 210 8 B - Normal Buccal Brush chr6 143283988 A G AIG1 INTRON 76 3 B - Normal Buccal Brush chr6 161048913 C G MAP3K4 p.S214C MISSENSE 244 12 B - Normal Buccal Brush chr7 85068163 G T SEMA3D INTRON 146 6 B - Normal Buccal Brush chr7 93426570 C T CALCR p.R404H MISSENSE 251 5 B - Normal Buccal Brush chr7 96097560 C T DYNC1I1 p.S635S SILENT 382 11 B - Normal Buccal Brush chr7 99358290 G T AC004922.1 INTRON 165 7 B - Normal Buccal Brush chr7 100157969 G A MAP11 INTRON 227 8 B - Normal Buccal Brush chr7 150858954 G A AOC1 p.G588S MISSENSE 107 4 B - Normal Buccal Brush chr8 74703721 C T MIR2052HG RNA 182 10 B - Normal Buccal Brush chr8 81443207 A C PMP2 THREE PRIME UTR 45 5 B - Normal Buccal Brush chr8 94841500 C T INTS8 p.Q343* NONSENSE 125 3 B - Normal Buccal Brush chr8 98032343 A G MATN2 INTRON 224 11 B - Normal Buccal Brush chr8 125009282 A T SQLE p.R349S MISSENSE 68 4 B - Normal Buccal Brush chr8 143924902 C T PLEC p.R1813H MISSENSE 167 3 B - Normal Buccal Brush chr10 51153388 C A PRKG1 INTRON 22 3 B - Normal Buccal Brush chr10 73785786 C A ZSWIM8 FIVE PRIME UTR 133 3 B - Normal Buccal Brush chr10 74842737 A G KAT6B DE NOVO START IN FRAME 30 4 B - Normal Buccal Brush chr10 80289485 T C MAT1A FIVE PRIME UTR 319 5 B - Normal Buccal Brush chr10 96032767 G A ENTPD1-AS1 RNA 190 10 B - Normal Buccal Brush chr10 97452804 C T ZDHHC16 INTRON 227 13 B - Normal Buccal Brush chr10 100524104 G C NDUFB8 INTRON 121 5 B - Normal Buccal Brush chr10 122393326 C T PLEKHA1 p.Y42Y SILENT 116 6 B - Normal Buccal Brush chr10 129842246 G A EBF3 p.S405S SILENT 296 6 B - Normal Buccal Brush chr10 132135824 G T JAKMIP3 INTRON 25 3 B - Normal Buccal Brush chr10 132780923 A G INPP5A INTRON 138 6 B - Normal Buccal Brush chr11 5243204 C T HBD INTRON 184 5 B - Normal Buccal Brush chr11 34091996 T G CAPRIN1 p.F549V MISSENSE 238 10 B - Normal Buccal Brush chr11 43750847 C T HSD17B12 INTRON 108 4 B - Normal Buccal Brush chr11 46320904 G T CREB3L1 THREE PRIME UTR 497 25 B - Normal Buccal Brush chr11 55651562 T C OR4S2 p.L220P MISSENSE 205 8 B - Normal Buccal Brush chr11 60046670 G A OOSP2 INTRON 187 5 B - Normal Buccal Brush chr11 62419137 C T SCGB1A1 INTRON 170 4 B - Normal Buccal Brush chr11 68914967 C T IGHMBP2 p.R286W MISSENSE 245 14 B - Normal Buccal Brush chr11 85628663 C T TMEM126B p.P19L MISSENSE 58 6 B - Normal Buccal Brush chr11 94998888 C T KDM4D p.P506S MISSENSE 166 5 B - Normal Buccal Brush chr11 100070378 G A CNTN5 INTRON 55 4 B - Normal Buccal Brush chr12 4746395 C G GALNT8 INTRON 60 3 B - Normal Buccal Brush chr12 4911468 C A KCNA1 p.H30Q MISSENSE 343 6 B - Normal Buccal Brush chr12 6581539 A C CHD4 INTRON 268 22 B - Normal Buccal Brush chr12 6841573 G A GNB3 INTRON 158 3 B - Normal Buccal Brush chr12 56002480 C T SUOX INTRON 328 6 B - Normal Buccal Brush chr12 57183442 A G LRP1 p.N1909S MISSENSE 183 4 B - Normal Buccal Brush chr12 108817252 A C SSH1 INTRON 47 4 B - Normal Buccal Brush chr12 109393306 C A MYO1H INTRON 248 7 B - Normal Buccal Brush chr12 111320052 C T CUX2 p.N681N SILENT 226 5 B - Normal Buccal Brush chr12 120222738 G C PXN p.S167* NONSENSE 236 5 B - Normal Buccal Brush chr12 128415148 C T TMEM132C p.P168S MISSENSE 346 9 B - Normal Buccal Brush chr12 128616039 G A TMEM132C INTRON 62 4 B - Normal Buccal Brush chr12 133106147 C G ZNF140 THREE PRIME UTR 175 5 B - Normal Buccal Brush chr13 23375107 G A SACS INTRON 101 3 B - Normal Buccal Brush chr13 51799629 T C DHRS12 p.M11V MISSENSE 109 9 B - Normal Buccal Brush chr14 21091290 A G ZNF219 INTRON 49 3 B - Normal Buccal Brush chr14 28767975 T C FOXG1 p.N232N SILENT 436 5 B - Normal Buccal Brush chr14 56801940 A G OTX2 p.M230T MISSENSE 326 13 B - Normal Buccal Brush chr14 60976129 G A TRMT5 INTRON 93 3 B - Normal Buccal Brush chr14 87963349 A C GALC INTRON 119 3 B - Normal Buccal Brush chr14 88479022 C T PTPN21 p.T803T SILENT 249 5 B - Normal Buccal Brush chr15 25340367 T C UBE3A INTRON 46 3 B - Normal Buccal Brush chr15 40810001 G C ZFYVE19 INTRON 340 5 B - Normal Buccal Brush chr15 43456008 G A TP53BP1 p.S867L MISSENSE 245 20 B - Normal Buccal Brush chr15 43528641 C T MAP1A p.R2628C MISSENSE 188 5 B - Normal Buccal Brush chr15 48962858 T C SHC4 p.K53R MISSENSE 362 19 B - Normal Buccal Brush chr15 50648795 A G TRPM7 p.F71F SILENT 163 9 B - Normal Buccal Brush chr15 62647260 C T TLN2 INTRON 231 4 B - Normal Buccal Brush chr15 89628475 G A KIF7 p.R1326W MISSENSE 366 10 B - Normal Buccal Brush chr15 92500637 C T C15orf32 RNA 27 3 B - Normal Buccal Brush chr16 49635830 C A ZNF423 p.A1048S MISSENSE 423 7 B - Normal Buccal Brush chr16 55326348 G A IRX6 p.A20T MISSENSE 137 3 B - Normal Buccal Brush chr16 55483001 A G MMP2 p.G6G SILENT 397 6 B - Normal Buccal Brush chr16 57960631 G A CNGB1 INTRON 161 4 B - Normal Buccal Brush chr18 26057693 C A SS18 p.G94V MISSENSE 139 7 B - Normal Buccal Brush chr18 45643059 C T SLC14A2 INTRON 87 5 B - Normal Buccal Brush chr18 56758829 C G WDR7 INTRON 51 6 B - Normal Buccal Brush chr20 5580147 T A GPCPD1 INTRON 114 4 B - Normal Buccal Brush chr20 63490685 C T EEF1A2 p.G275S MISSENSE 253 13 B - Normal Buccal Brush chr21 33888090 G A AP000311.1 INTRON 95 5 B - Normal Buccal Brush chr21 36767299 G A HLCS INTRON 158 7 B - Normal Buccal Brush chrX 19456962 A T MAP3K15 p.L316M MISSENSE 250 9 B - Normal Buccal Brush chrX 32386518 A G DMD INTRON 83 3 B - Normal Buccal Brush chrX 47626539 G A CFP INTRON 100 6 B - Normal Buccal Brush chrX 48689027 G A WAS p.A433A SILENT 157 7 B - Normal Buccal Brush chrX 48988107 G A GRIPAP1 INTRON 136 5 B - Normal Buccal Brush chrX 50156230 G A PYY3 RNA 130 5 B - Normal Buccal Brush chrX 55624056 A G FOXR2 p.Q115Q SILENT 250 9 B - Normal Buccal Brush chrX 71460812 C T TAF1 INTRON 662 8 B - Normal Buccal Brush chrX 77618748 G T ATRX INTRON 74 4 B - Normal Buccal Brush chrX 87635678 G T KLHL4 p.V610L MISSENSE 108 3 B - Normal Buccal Brush chrX 100826647 T A CSTF2 p.V239D MISSENSE 165 9 B - Normal Buccal Brush chrX 103587139 T C TCEAL4 p.M155T MISSENSE 155 4 B - Normal Buccal Brush chrX 105893856 G T NRK p.G135C MISSENSE 177 6 B - Normal Buccal Brush chrX 108165054 G A COL4A6 INTRON 61 6 B - Normal Buccal Brush chrX 119589892 G C UBE2A INTRON 347 5 B - Normal Buccal Brush chrX 119589916 A G UBE2A INTRON 342 14 B - Normal Buccal Brush chrX 136668000 G A ARHGEF6 THREE PRIME UTR 262 14 B - Normal Buccal Brush chrX 141907612 C A MAGEC1 p.F736L MISSENSE 378 9 B - Normal Buccal Brush chrX 153555939 C G ATP2B3 INTRON 65 3 B - Normal Buccal Brush chrX 154398202 G A RPL10 FIVE PRIME UTR 487 7 B - Normal Buccal Brush chr1 6234822 C T ICMT INTRON 119 1 B - Normal Buccal Brush chr2 60461184 G A BCL11A p.A576A SILENT 446 1 B - Normal Buccal Brush chr2 189561836 C T SLC40A1 THREE PRIME UTR 312 1 B - Normal Buccal Brush chr3 47845757 G T DHX30 p.A305S MISSENSE 171 1 B - Normal Buccal Brush chr3 115676341 C A GAP43 p.T156K MISSENSE 174 1 B - Normal Buccal Brush chr5 141357073 G A PCDHGA2 INTRON 376 1 B - Normal Buccal Brush chr7 100628161 G A TFR2 INTRON 431 2 B - Normal Buccal Brush chr7 123452699 C T IQUB THREE PRIME UTR 140 1 B - Normal Buccal Brush chr7 143935718 C A OR2F2 p.I162I SILENT 826 1 B - Normal Buccal Brush chr7 144004310 T C OR6B1 p.I105T MISSENSE 496 4 B - Normal Buccal Brush chr7 149765009 C T ZNF467 p.R498H MISSENSE 94 1 B - Normal Buccal Brush chr8 68446695 C A C8orf34 INTRON 51 1 B - Normal Buccal Brush chr8 90063380 A G CALB1 INTRON 93 1 B - Normal Buccal Brush chr10 27017730 C A ANKRD26 p.K1426N MISSENSE 204 1 B - Normal Buccal Brush chr10 74843222 A T KAT6B p.N122I MISSENSE 243 1 B - Normal Buccal Brush chr10 102066548 G A HPS6 p.P358P SILENT 453 1 B - Normal Buccal Brush chr12 56589251 C T RBMS2 THREE PRIME UTR 121 2 B - Normal Buccal Brush chr13 31792896 C T RXFP2 p.R532* NONSENSE 529 2 B - Normal Buccal Brush chr14 30911074 G A STRN3 p.P479S MISSENSE 186 1 B - Normal Buccal Brush chr14 46651253 G A RPL10L p.R162C MISSENSE 277 2 B - Normal Buccal Brush chr14 49621773 T G MGAT2 p.F169V MISSENSE 576 2 B - Normal Buccal Brush chr15 59231805 T C MYO1E INTRON 146 1 B - Normal Buccal Brush chr15 65661837 C A DENND4A THREE PRIME UTR 144 2 B - Normal Buccal Brush chr15 79970807 G A BCL2A1 p.R105* NONSENSE 454 1 B - Normal Buccal Brush chr16 88489139 C T ZFPM1 p.P85L MISSENSE 189 1 B - Normal Buccal Brush chr17 7670654 T A TP53 p.D352V MISSENSE 171 3 B - Normal Buccal Brush chr17 7673821 G A TP53 p.R267W MISSENSE 135 2 B - Normal Buccal Brush chr17 21416186 G A KCNJ12 p.G282S MISSENSE 240 2 B - Normal Buccal Brush chr17 35183515 C T UNC45B p.A823V MISSENSE 154 1 B - Normal Buccal Brush chr17 39184292 G A CACNB1 INTRON 275 1 B - Normal Buccal Brush chr17 55751497 G C PCTP INTRON 185 1 B - Normal Buccal Brush chr18 80042050 T A RBFA INTRON 196 1 B - Normal Buccal Brush chr21 15878429 C T USP25 p.A1041V MISSENSE 196 1 B - Normal Buccal Brush chr21 45505412 C T COL18A1 p.T1203I MISSENSE 321 1 B - Normal Buccal Brush chrX 151664105 G C PASD1 INTRON 310 1 B - Normal Buccal Brush chr2 27023801 C G MAPRE3 INTRON 91 1 B - Normal Buccal Brush chr10 60886213 C T RHOBTB1 p.D492N MISSENSE 333 1 B - Normal Buccal Brush chr10 68437347 T C DNA2 INTRON 113 1 B - Normal Buccal Brush chr21 45405314 C G COL18A1 INTRON 20 7 B - Normal Buccal Brush chr21 45405320 C T COL18A1 INTRON 23 6 B - Normal Buccal Brush chrX 48832011 C T PCSK1N p.A149T MISSENSE 64 1 B - Normal Buccal Brush chrX 124523344 T G TENM1 INTRON 44 1 B - Normal Buccal Brush chr1 11944438 C A PLOD1 INTRON 34 1 B - Normal Buccal Brush chr2 140776043 A C LRP1B INTRON 37 1 B - Normal Buccal Brush chr3 66998360 C T KBTBD8 p.A2V MISSENSE 70 1 B - Normal Buccal Brush chr4 38015047 G A TBC1D1 INTRON 144 1 B - Normal Buccal Brush chr11 6846135 C T OR10A5 p.F151F SILENT 463 1 B - Normal Buccal Brush chr19 8334753 C T KANK3 p.L358L SILENT 86 1 B - Normal Buccal Brush chrX 38287239 G A AF241726.2 INTRON 611 1 B - Normal Buccal Brush chr1 174988667 C A RABGAP1L p.C263* NONSENSE 181 1 B - Normal Buccal Brush chr3 19346747 C A KCNH8 INTRON 133 1 B - Normal Buccal Brush chr5 131976546 A G ACSL6 INTRON 31 4 B - Normal Buccal Brush chr7 141838035 G T PRSS37 p.I85I SILENT 499 1 B - Normal Buccal Brush chr12 123465467 G A SNRNP35 INTRON 147 1 B - Normal Buccal Brush chr14 49805971 C T NEMF INTRON 122 1 B - Normal Buccal Brush chr14 50342983 C T CDKL1 INTRON 55 1 B - Normal Buccal Brush chr21 35047551 A T RUNX1 INTRON 23 3 C - Dysplasia Tissue chr4 41745985 G A PHOX2B p.A256V MISSENSE 55 2 C - Dysplasia Tissue chr12 106711386 C T RFX4 INTRON 159 1 C - Dysplasia Tissue chr12 131207428 G T LINC01257 RNA 17 5 C - Dysplasia Tissue chrX 8623734 G T ANOS1 INTRON 58 1 C - Dysplasia Tissue chr2 43874517 A C ABCG8 INTRON 78 3 C - Dysplasia Tissue chr3 122700915 C T PARP14 p.P787P SILENT 459 1 C - Dysplasia Tissue chr5 123100026 C T PRDM6 INTRON 131 1 C - Dysplasia Tissue chr7 93426570 C T CALCR p.R404H MISSENSE 340 1 C - Dysplasia Tissue chr16 55326348 G A IRX6 p.A20T MISSENSE 188 1 C - Dysplasia Tissue chrX 71460812 C T TAF1 INTRON 648 1 C - Dysplasia Tissue chr1 6234822 C T ICMT INTRON 122 10 C - Dysplasia Tissue chr1 24652934 G A SRRM1 p.R314R SILENT 134 3 C - Dysplasia Tissue chr1 43981404 G A B4GALT2 p.V82I MISSENSE 155 6 C - Dysplasia Tissue chr1 51730005 A T OSBPL9 INTRON 110 6 C - Dysplasia Tissue chr1 162357021 C T NOS1AP p.S270F MISSENSE 118 4 C - Dysplasia Tissue chr1 170031744 C A KIFAP3 INTRON 38 3 C - Dysplasia Tissue chr1 181717042 C A CACNA1E INTRON 236 10 C - Dysplasia Tissue chr1 201320256 C T PKP1 INTRON 456 18 C - Dysplasia Tissue chr1 228274197 C T OBSCN p.C2187C SILENT 210 4 C - Dysplasia Tissue chr1 230265136 C T GALNT2 INTRON 207 9 C - Dysplasia Tissue chr2 21008622 G A APOB p.T2749I MISSENSE 394 12 C - Dysplasia Tissue chr2 24209084 C A ITSN2 INTRON 96 13 C - Dysplasia Tissue chr2 60461184 G A BCL11A p.A576A SILENT 496 21 C - Dysplasia Tissue chr2 99554283 C A AFF3 INTRON 108 4 C - Dysplasia Tissue chr2 100993489 G A NPAS2 p.A752T MISSENSE 130 3 C - Dysplasia Tissue chr2 127853089 C T POLR2D p.E30E SILENT 176 6 C - Dysplasia Tissue chr2 128115257 A G UGGT1 INTRON 156 6 C - Dysplasia Tissue chr2 189561836 C T SLC40A1 THREE PRIME UTR 303 8 C - Dysplasia Tissue chr2 207123871 G C KLF7 p.P212P SILENT 473 17 C - Dysplasia Tissue chr3 12372029 G A PPARG INTRON 232 9 C - Dysplasia Tissue chr3 12545321 G A MKRN2OS p.I48I SILENT 87 3 C - Dysplasia Tissue chr3 32818537 G A TRIM71 p.A153T MISSENSE 147 13 C - Dysplasia Tissue chr3 32954466 G A CCR4 p.T348T SILENT 147 4 C - Dysplasia Tissue chr3 47845757 G T DHX30 p.A305S MISSENSE 209 7 C - Dysplasia Tissue chr3 49108504 C T USP19 p.E1343K MISSENSE 98 7 C - Dysplasia Tissue chr3 57666039 T C DENND6A INTRON 83 5 C - Dysplasia Tissue chr3 75737669 A G ZNF717 p.C652R MISSENSE 190 9 C - Dysplasia Tissue chr3 102470358 G A ZPLD1 INTRON 209 10 C - Dysplasia Tissue chr3 109118118 C T MORC1 FIVE PRIME UTR 85 3 C - Dysplasia Tissue chr3 115676341 C A GAP43 p.T156K MISSENSE 215 4 C - Dysplasia Tissue chr3 121488686 C T POLQ p.P1415P SILENT 226 7 C - Dysplasia Tissue chr3 164341354 G A Unknown IGR 181 10 C - Dysplasia Tissue chr3 190322158 C T CLDN1 p.G17R MISSENSE 405 9 C - Dysplasia Tissue chr4 17709098 C T FAM184B p.E230K MISSENSE 355 14 C - Dysplasia Tissue chr5 11384996 G A CTNND2 p.R282R SILENT 18 3 C - Dysplasia Tissue chr5 13862563 G A DNAH5 p.S1594F MISSENSE 82 4 C - Dysplasia Tissue chr5 13862658 G A DNAH5 p.F1562F SILENT 201 9 C - Dysplasia Tissue chr5 139418663 C T DNAJC18 INTRON 128 3 C - Dysplasia Tissue chr5 140303069 G A PFDN1 p.A2V MISSENSE 209 4 C - Dysplasia Tissue chr5 141357073 G A PCDHGA2 INTRON 366 15 C - Dysplasia Tissue chr5 146157335 C A LARS1 INTRON 147 3 C - Dysplasia Tissue chr5 151030446 C T TNIP1 THREE PRIME UTR 82 5 C - Dysplasia Tissue chr5 176862552 G A UNC5A INTRON 81 3 C - Dysplasia Tissue chr6 105124619 G T BVES p.N192K MISSENSE 70 3 C - Dysplasia Tissue chr6 136600982 C T MAP3K5 INTRON 58 3 C - Dysplasia Tissue chr6 138245613 G A ARFGEF3 INTRON 239 10 C - Dysplasia Tissue chr7 1762290 G T Unknown IGR 95 6 C - Dysplasia Tissue chr7 100628161 G A TFR2 INTRON 351 13 C - Dysplasia Tissue chr7 100881307 C T SRRT p.R49C MISSENSE 208 3 C - Dysplasia Tissue chr7 101234407 C T CLDN15 p.A85T MISSENSE 116 5 C - Dysplasia Tissue chr7 106879620 C G PIK3CG p.I831M MISSENSE 271 11 C - Dysplasia Tissue chr7 123452699 C T IQUB THREE PRIME UTR 210 8 C - Dysplasia Tissue chr7 128840536 C A FLNC INTRON 308 7 C - Dysplasia Tissue chr7 143935718 C A OR2F2 p.I162I SILENT 773 29 C - Dysplasia Tissue chr7 144004310 T C OR6B1 p.I105T MISSENSE 515 17 C - Dysplasia Tissue chr7 149765009 C T ZNF467 p.R498H MISSENSE 100 3 C - Dysplasia Tissue chr8 67257698 G T ARFGEF1 INTRON 141 8 C - Dysplasia Tissue chr8 68446695 C A C8orf34 INTRON 52 3 C - Dysplasia Tissue chr8 70069473 C A PRDM14 p.G130C MISSENSE 299 7 C - Dysplasia Tissue chr8 73780487 G A AC022826.2 INTRON 167 8 C - Dysplasia Tissue chr8 90063380 A G CALB1 INTRON 128 4 C - Dysplasia Tissue chr8 116938335 G A AARD p.R31H MISSENSE 305 6 C - Dysplasia Tissue chr8 143870327 G C EPPK1 p.P976R MISSENSE 160 9 C - Dysplasia Tissue chr9 92250145 A G IARS1 INTRON 107 5 C - Dysplasia Tissue chr10 11952087 G A UPF2 p.R1005* NONSENSE 113 5 C - Dysplasia Tissue chr10 27017730 C A ANKRD26 p.K1426N MISSENSE 240 5 C - Dysplasia Tissue chr10 34377997 G A PARD3 p.G503G SILENT 78 3 C - Dysplasia Tissue chr10 37219294 A C ANKRD30A p.E1313D MISSENSE 193 6 C - Dysplasia Tissue chr10 38507593 G T Unknown IGR 37 3 C - Dysplasia Tissue chr10 66926375 G A LRRTM3 FIVE PRIME UTR 123 7 C - Dysplasia Tissue chr10 68755576 G A CCAR1 INTRON 98 8 C - Dysplasia Tissue chr10 74843222 A T KAT6B p.N122I MISSENSE 243 7 C - Dysplasia Tissue chr10 80078683 G A TMEM254 FIVE PRIME UTR 232 13 C - Dysplasia Tissue chr10 101770483 G A FGF8 p.T194M MISSENSE 318 10 C - Dysplasia Tissue chr10 102066548 G A HPS6 p.P358P SILENT 458 21 C - Dysplasia Tissue chr10 119157954 T C SFXN4 INTRON 196 11 C - Dysplasia Tissue chr10 123154983 C G BUB3 p.F22L MISSENSE 377 9 C - Dysplasia Tissue chr11 1883534 G A LSP1 p.A286T MISSENSE 83 3 C - Dysplasia Tissue chr11 6545561 G A DNHD1 p.R1541H MISSENSE 349 16 C - Dysplasia Tissue chr11 7577682 G A PPFIBP2 INTRON 138 7 C - Dysplasia Tissue chr11 18710317 G A IGSF22 INTRON 234 4 C - Dysplasia Tissue chr11 22362932 A G SLC17A6 INTRON 77 4 C - Dysplasia Tissue chr11 65380282 G T SLC25A45 INTRON 95 4 C - Dysplasia Tissue chr11 67255330 C T KDM2A THREE PRIME UTR 152 7 C - Dysplasia Tissue chr11 69054122 C T TPCN2 INTRON 109 3 C - Dysplasia Tissue chr11 72110762 T G ANAPC15 INTRON 220 10 C - Dysplasia Tissue chr12 5494118 C A NTF3 INTRON 71 3 C - Dysplasia Tissue chr12 6587577 C A CHD4 INTRON 239 6 C - Dysplasia Tissue chr12 21306896 G A SLCO1A2 p.T11M MISSENSE 328 11 C - Dysplasia Tissue chr12 21910225 C T ABCC9 p.A418T MISSENSE 208 9 C - Dysplasia Tissue chr12 56589251 C T RBMS2 THREE PRIME UTR 96 4 C - Dysplasia Tissue chr12 76815837 T G ZDHHC17 INTRON 32 3 C - Dysplasia Tissue chr13 24710910 C G ATP12A INTRON 130 4 C - Dysplasia Tissue chr13 31792896 C T RXFP2 p.R532* NONSENSE 539 22 C - Dysplasia Tissue chr13 33055174 G A KL p.K486K SILENT 286 5 C - Dysplasia Tissue chr13 49552186 C A RCBTB1 p.V235L MISSENSE 81 3 C - Dysplasia Tissue chr13 99643006 G T CLYBL INTRON 138 6 C - Dysplasia Tissue chr13 113082558 C T MCF2L INTRON 233 7 C - Dysplasia Tissue chr14 21084740 T G ARHGEF40 INTRON 45 3 C - Dysplasia Tissue chr14 30911074 G A STRN3 p.P479S MISSENSE 226 5 C - Dysplasia Tissue chr14 46651253 G A RPL10L p.R162C MISSENSE 352 16 C - Dysplasia Tissue chr14 49621773 T G MGAT2 p.F169V MISSENSE 668 30 C - Dysplasia Tissue chr14 104884061 G A CEP170B p.G428R MISSENSE 265 14 C - Dysplasia Tissue chr15 59231805 T C MYO1E INTRON 138 5 C - Dysplasia Tissue chr15 63588945 C A USP3 p.P444H SPLICE SITE 102 3 C - Dysplasia Tissue chr15 65661837 C A DENND4A THREE PRIME UTR 158 8 C - Dysplasia Tissue chr15 79970807 G A BCL2A1 p.R105* NONSENSE 420 20 C - Dysplasia Tissue chr16 1602282 C T IFT140 INTRON 213 11 C - Dysplasia Tissue chr16 2084788 C T TSC2 INTRON 68 4 C - Dysplasia Tissue chr16 57816891 G A AC092118.1 RNA 196 5 C - Dysplasia Tissue chr16 67363673 A G LRRC36 p.T100A MISSENSE 182 3 C - Dysplasia Tissue chr16 81179727 G A PKD1L2 RNA 118 6 C - Dysplasia Tissue chr16 88489139 C T ZFPM1 p.P85L MISSENSE 221 13 C - Dysplasia Tissue chr16 89696978 G T SPATA2L THREE PRIME UTR 151 3 C - Dysplasia Tissue chr17 7670654 T A TP53 p.D352V MISSENSE 131 12 C - Dysplasia Tissue chr17 7673821 G A TP53 p.R267W MISSENSE 96 20 C - Dysplasia Tissue chr17 21416186 G A KCNJ12 p.G282S MISSENSE 262 4 C - Dysplasia Tissue chr17 35183515 C T UNC45B p.A823V MISSENSE 136 3 C - Dysplasia Tissue chr17 39184292 G A CACNB1 INTRON 300 16 C - Dysplasia Tissue chr17 55751497 G C PCTP INTRON 214 13 C - Dysplasia Tissue chr17 75758481 G A GALK1 p.G304G SILENT 238 5 C - Dysplasia Tissue chr18 5891344 C T TMEM200C p.A240A SILENT 63 5 C - Dysplasia Tissue chr18 80042050 T A RBFA INTRON 161 5 C - Dysplasia Tissue chr20 290817 A C C20orf96 FIVE PRIME FLANK 31 3 C - Dysplasia Tissue chr20 49233691 C T DDX27 p.R450W MISSENSE 185 7 C - Dysplasia Tissue chr21 15878429 C T USP25 p.A1041V MISSENSE 220 5 C - Dysplasia Tissue chr21 45505412 C T COL18A1 p.T1203I MISSENSE 416 10 C - Dysplasia Tissue chrX 15314528 A T ASB11 INTRON 202 5 C - Dysplasia Tissue chrX 34131415 G A FAM47A p.D288D SILENT 449 10 C - Dysplasia Tissue chrX 87622237 C A KLHL4 p.N317K MISSENSE 41 3 C - Dysplasia Tissue chrX 111246624 G A CAPN6 p.H627Y MISSENSE 192 4 C - Dysplasia Tissue chrX 124077980 C T STAG2 p.I899I SILENT 105 5 C - Dysplasia Tissue chrX 141626346 T A SPANXA2-OT1 RNA 222 8 C - Dysplasia Tissue chrX 151664105 G C PASD1 INTRON 338 9 C - Dysplasia Tissue chr1 179551564 G C NPHS2 INTRON 114 2 C - Dysplasia Tissue chr1 201070292 G A CACNA1S p.F780F SILENT 87 2 C - Dysplasia Tissue chr2 27023801 C G MAPRE3 INTRON 82 2 C - Dysplasia Tissue chr2 151694658 G T NEB INTRON 206 3 C - Dysplasia Tissue chr4 16505951 T C LDB2 INTRON 321 3 C - Dysplasia Tissue chr5 177398837 T C SLC34A1 THREE PRIME UTR 114 1 C - Dysplasia Tissue chr7 77376829 G A GSAP INTRON 74 3 C - Dysplasia Tissue chr7 100098909 G A MCM7 INTRON 52 3 C - Dysplasia Tissue chr8 14108366 G A SGCZ INTRON 64 2 C - Dysplasia Tissue chr8 75558695 G T HNF4G INTRON 106 2 C - Dysplasia Tissue chr9 84723764 C T NTRK2 INTRON 108 1 C - Dysplasia Tissue chr10 22389119 C G SPAG6 INTRON 49 1 C - Dysplasia Tissue chr10 59251341 T G FAM13C INTRON 51 2 C - Dysplasia Tissue chr10 60886213 C T RHOBTB1 p.D492N MISSENSE 360 4 C - Dysplasia Tissue chr10 68437347 T C DNA2 INTRON 120 5 C - Dysplasia Tissue chr11 18724298 C A IGSF22 INTRON 120 2 C - Dysplasia Tissue chr11 61334524 T A TKFC INTRON 81 2 C - Dysplasia Tissue chr11 86446652 C A ME3 INTRON 57 1 C - Dysplasia Tissue chr12 121269639 G A CAMKK2 INTRON 188 4 C - Dysplasia Tissue chr12 132021118 G C EP400 p.S1496T MISSENSE 138 3 C - Dysplasia Tissue chr14 52069019 G A NID2 FIVE PRIME UTR 50 6 C - Dysplasia Tissue chr15 78625389 C T CHRNB4 INTRON 41 1 C - Dysplasia Tissue chr17 4981236 C A CAMTA2 p.S235I MISSENSE 58 2 C - Dysplasia Tissue chr17 82668136 C T RAB40B INTRON 94 3 C - Dysplasia Tissue chr18 31546639 C G DSG2 p.L1085V MISSENSE 262 2 C - Dysplasia Tissue chr21 45405314 C G COL18A1 INTRON 31 4 C - Dysplasia Tissue chr21 45405320 C T COL18A1 INTRON 30 3 C - Dysplasia Tissue chrX 32217062 G T DMD p.R2098R SPLICE SITE 165 4 C - Dysplasia Tissue chrX 48832011 C T PCSK1N p.A149T MISSENSE 59 1 C - Dysplasia Tissue chrX 101841736 C A NXF5 p.A60S MISSENSE 57 1 C - Dysplasia Tissue chrX 124406155 G A TENM1 INTRON 46 1 C - Dysplasia Tissue chrX 124523344 T G TENM1 INTRON 47 2 C - Dysplasia Tissue chr1 11944438 C A PLOD1 INTRON 31 3 C - Dysplasia Tissue chr19 8334753 C T KANK3 p.L358L SILENT 77 2 C - Dysplasia Tissue chr20 59192393 G A ZNF831 p.A458A SILENT 773 1 C - Dysplasia Tissue chr1 227775943 G A SNAP47 INTRON 359 1 C - Dysplasia Tissue chr5 13913619 T G DNAH5 INTRON 43 1 C - Dysplasia Tissue chr5 131976546 A G ACSL6 INTRON 33 1 C - Dysplasia Tissue chr7 141838035 G T PRSS37 p.I85I SILENT 483 1 C - Dysplasia Tissue chr18 59900615 G A PMAIP1 INTRON 180 1 C - Dysplasia Tissue chr21 35047551 A T RUNX1 INTRON 21 5 D - Dysplasia Brush chr3 67518477 C T SUCLG2 INTRON 75 1 D - Dysplasia Brush chr12 69589505 G T CCT2 p.R156L MISSENSE 73 1 D - Dysplasia Brush chr12 131207428 G T LINC01257 RNA 26 5 D - Dysplasia Brush chr20 45110658 C A WFDC5 p.R68L MISSENSE 386 1 D - Dysplasia Brush chr2 43874517 A C ABCG8 INTRON 64 2 D - Dysplasia Brush chr10 80289485 T C MAT1A FIVE PRIME UTR 348 1 D - Dysplasia Brush chr15 89628475 G A KIF7 p.R1326W MISSENSE 400 1 D - Dysplasia Brush chr1 6234822 C T ICMT INTRON 111 8 D - Dysplasia Brush chr1 24652934 G A SRRM1 p.R314R SILENT 169 2 D - Dysplasia Brush chr1 43981404 G A B4GALT2 p.V82I MISSENSE 157 17 D - Dysplasia Brush chr1 51730005 A T OSBPL9 INTRON 103 8 D - Dysplasia Brush chr1 162357021 C T NOS1AP p.S270F MISSENSE 95 9 D - Dysplasia Brush chr1 181717042 C A CACNA1E INTRON 194 24 D - Dysplasia Brush chr1 201320256 C T PKP1 INTRON 396 49 D - Dysplasia Brush chr1 230265136 C T GALNT2 INTRON 215 18 D - Dysplasia Brush chr2 21008622 G A APOB p.T2749I MISSENSE 352 40 D - Dysplasia Brush chr2 24209084 C A ITSN2 INTRON 82 14 D - Dysplasia Brush chr2 60461184 G A BCL11A p.A576A SILENT 376 27 D - Dysplasia Brush chr2 99554283 C A AFF3 INTRON 88 8 D - Dysplasia Brush chr2 127853089 C T POLR2D p.E30E SILENT 158 9 D - Dysplasia Brush chr2 128115257 A G UGGT1 INTRON 181 15 D - Dysplasia Brush chr2 189561836 C T SLC40A1 THREE PRIME UTR 301 28 D - Dysplasia Brush chr2 207123871 G C KLF7 p.P212P SILENT 393 52 D - Dysplasia Brush chr3 12372029 G A PPARG INTRON 209 21 D - Dysplasia Brush chr3 12545321 G A MKRN2OS p.I48I SILENT 99 1 D - Dysplasia Brush chr3 32818537 G A TRIM71 p.A153T MISSENSE 136 25 D - Dysplasia Brush chr3 32954466 G A CCR4 p.T348T SILENT 159 10 D - Dysplasia Brush chr3 47845757 G T DHX30 p.A305S MISSENSE 212 21 D - Dysplasia Brush chr3 49108504 C T USP19 p.E1343K MISSENSE 101 7 D - Dysplasia Brush chr3 57666039 T C DENND6A INTRON 61 4 D - Dysplasia Brush chr3 75737669 A G ZNF717 p.C652R MISSENSE 155 13 D - Dysplasia Brush chr3 102470358 G A ZPLD1 INTRON 190 13 D - Dysplasia Brush chr3 109118118 C T MORC1 FIVE PRIME UTR 116 5 D - Dysplasia Brush chr3 115676341 C A GAP43 p.T156K MISSENSE 191 8 D - Dysplasia Brush chr3 121488686 C T POLQ p.P1415P SILENT 186 21 D - Dysplasia Brush chr3 164341354 G A Unknown IGR 129 12 D - Dysplasia Brush chr3 190322158 C T CLDN1 p.G17R MISSENSE 310 9 D - Dysplasia Brush chr4 17709098 C T FAM184B p.E230K MISSENSE 335 39 D - Dysplasia Brush chr5 11384996 G A CTNND2 p.R282R SILENT 22 2 D - Dysplasia Brush chr5 13862563 G A DNAH5 p.S1594F MISSENSE 76 6 D - Dysplasia Brush chr5 13862658 G A DNAH5 p.F1562F SILENT 178 17 D - Dysplasia Brush chr5 139418663 C T DNAJC18 INTRON 117 1 D - Dysplasia Brush chr5 140303069 G A PFDN1 p.A2V MISSENSE 236 1 D - Dysplasia Brush chr5 141357073 G A PCDHGA2 INTRON 355 29 D - Dysplasia Brush chr5 151030446 C T TNIP1 THREE PRIME UTR 88 7 D - Dysplasia Brush chr5 176862552 G A UNC5A INTRON 58 5 D - Dysplasia Brush chr6 105124619 G T BVES p.N192K MISSENSE 55 4 D - Dysplasia Brush chr6 136600982 C T MAP3K5 INTRON 42 4 D - Dysplasia Brush chr6 138245613 G A ARFGEF3 INTRON 230 18 D - Dysplasia Brush chr7 1762290 G T Unknown IGR 122 18 D - Dysplasia Brush chr7 100628161 G A TFR2 INTRON 430 26 D - Dysplasia Brush chr7 101234407 C T CLDN15 p.A85T MISSENSE 102 3 D - Dysplasia Brush chr7 106879620 C G PIK3CG p.I831M MISSENSE 277 24 D - Dysplasia Brush chr7 123452699 C T IQUB THREE PRIME UTR 158 17 D - Dysplasia Brush chr7 128840536 C A FLNC INTRON 272 26 D - Dysplasia Brush chr7 143935718 C A OR2F2 p.I162I SILENT 778 76 D - Dysplasia Brush chr7 144004310 T C OR6B1 p.I105T MISSENSE 484 49 D - Dysplasia Brush chr8 67257698 G T ARFGEF1 INTRON 133 11 D - Dysplasia Brush chr8 68446695 C A C8orf34 INTRON 27 4 D - Dysplasia Brush chr8 70069473 C A PRDM14 p.G130C MISSENSE 307 35 D - Dysplasia Brush chr8 73780487 G A AC022826.2 INTRON 188 17 D - Dysplasia Brush chr8 90063380 A G CALB1 INTRON 103 19 D - Dysplasia Brush chr8 116938335 G A AARD p.R31H MISSENSE 284 17 D - Dysplasia Brush chr8 143870327 G C EPPK1 p.P976R MISSENSE 172 23 D - Dysplasia Brush chr9 92250145 A G IARS1 INTRON 110 13 D - Dysplasia Brush chr10 11952087 G A UPF2 p.R1005* NONSENSE 111 11 D - Dysplasia Brush chr10 27017730 C A ANKRD26 p.K1426N MISSENSE 201 19 D - Dysplasia Brush chr10 37219294 A C ANKRD30A p.E1313D MISSENSE 170 25 D - Dysplasia Brush chr10 66926375 G A LRRTM3 FIVE PRIME UTR 111 1 D - Dysplasia Brush chr10 68755576 G A CCAR1 INTRON 128 13 D - Dysplasia Brush chr10 74843222 A T KAT6B p.N122I MISSENSE 232 11 D - Dysplasia Brush chr10 80078683 G A TMEM254 FIVE PRIME UTR 243 21 D - Dysplasia Brush chr10 101770483 G A FGF8 p.T194M MISSENSE 254 35 D - Dysplasia Brush chr10 102066548 G A HPS6 p.P358P SILENT 505 52 D - Dysplasia Brush chr10 119157954 T C SFXN4 INTRON 179 23 D - Dysplasia Brush chr10 123154983 C G BUB3 p.F22L MISSENSE 439 28 D - Dysplasia Brush chr11 6545561 G A DNHD1 p.R1541H MISSENSE 309 27 D - Dysplasia Brush chr11 7577682 G A PPFIBP2 INTRON 150 10 D - Dysplasia Brush chr11 18710317 G A IGSF22 INTRON 211 1 D - Dysplasia Brush chr11 22362932 A G SLC17A6 INTRON 53 8 D - Dysplasia Brush chr11 65380282 G T SLC25A45 INTRON 103 3 D - Dysplasia Brush chr11 67255330 C T KDM2A THREE PRIME UTR 134 11 D - Dysplasia Brush chr11 72110762 T G ANAPC15 INTRON 251 12 D - Dysplasia Brush chr12 6587577 C A CHD4 INTRON 244 32 D - Dysplasia Brush chr12 21306896 G A SLCO1A2 p.T11M MISSENSE 293 26 D - Dysplasia Brush chr12 21910225 C T ABCC9 p.A418T MISSENSE 164 14 D - Dysplasia Brush chr12 56589251 C T RBMS2 THREE PRIME UTR 84 8 D - Dysplasia Brush chr12 76815837 T G ZDHHC17 INTRON 42 3 D - Dysplasia Brush chr13 24710910 C G ATP12A INTRON 118 6 D - Dysplasia Brush chr13 31792896 C T RXFP2 p.R532* NONSENSE 554 40 D - Dysplasia Brush chr13 33055174 G A KL p.K486K SILENT 261 27 D - Dysplasia Brush chr13 99643006 G T CLYBL INTRON 130 7 D - Dysplasia Brush chr13 113082558 C T MCF2L INTRON 235 14 D - Dysplasia Brush chr14 21084740 T G ARHGEF40 INTRON 36 3 D - Dysplasia Brush chr14 30911074 G A STRN3 p.P479S MISSENSE 238 2 D - Dysplasia Brush chr14 46651253 G A RPL10L p.R162C MISSENSE 314 18 D - Dysplasia Brush chr14 49621773 T G MGAT2 p.F169V MISSENSE 737 67 D - Dysplasia Brush chr14 104884061 G A CEP170B p.G428R MISSENSE 245 48 D - Dysplasia Brush chr15 59231805 T C MYO1E INTRON 130 16 D - Dysplasia Brush chr15 65661837 C A DENND4A THREE PRIME UTR 160 10 D - Dysplasia Brush chr15 79970807 G A BCL2A1 p.R105* NONSENSE 576 45 D - Dysplasia Brush chr16 1602282 C T IFT140 INTRON 235 21 D - Dysplasia Brush chr16 2084788 C T TSC2 INTRON 83 8 D - Dysplasia Brush chr16 57816891 G A AC092118.1 RNA 201 8 D - Dysplasia Brush chr16 67363673 A G LRRC36 p.T100A MISSENSE 189 4 D - Dysplasia Brush chr16 81179727 G A PKD1L2 RNA 105 9 D - Dysplasia Brush chr16 88489139 C T ZFPM1 p.P85L MISSENSE 204 15 D - Dysplasia Brush chr17 7670654 T A TP53 p.D352V MISSENSE 157 32 D - Dysplasia Brush chr17 7673821 G A TP53 p.R267W MISSENSE 109 22 D - Dysplasia Brush chr17 21416186 G A KCNJ12 p.G282S MISSENSE 248 14 D - Dysplasia Brush chr17 35183515 C T UNC45B p.A823V MISSENSE 157 1 D - Dysplasia Brush chr17 39184292 G A CACNB1 INTRON 305 36 D - Dysplasia Brush chr17 55751497 G C PCTP INTRON 202 13 D - Dysplasia Brush chr17 75758481 G A GALK1 p.G304G SILENT 225 1 D - Dysplasia Brush chr18 5891344 C T TMEM200C p.A240A SILENT 39 5 D - Dysplasia Brush chr18 80042050 T A RBFA INTRON 191 19 D - Dysplasia Brush chr20 49233691 C T DDX27 p.R450W MISSENSE 169 23 D - Dysplasia Brush chr21 15878429 C T USP25 p.A1041V MISSENSE 228 1 D - Dysplasia Brush chr21 45505412 C T COL18A1 p.T1203I MISSENSE 385 34 D - Dysplasia Brush chrX 15314528 A T ASB11 INTRON 202 18 D - Dysplasia Brush chrX 34131415 G A FAM47A p.D288D SILENT 363 32 D - Dysplasia Brush chrX 87622237 C A KLHL4 p.N317K MISSENSE 43 2 D - Dysplasia Brush chrX 111246624 G A CAPN6 p.H627Y MISSENSE 192 15 D - Dysplasia Brush chrX 124077980 C T STAG2 p.I899I SILENT 111 8 D - Dysplasia Brush chrX 141626346 T A SPANXA2-OT1 RNA 199 14 D - Dysplasia Brush chrX 151664105 G C PASD1 INTRON 353 20 D - Dysplasia Brush chr1 179551564 G C NPHS2 INTRON 93 8 D - Dysplasia Brush chr1 201070292 G A CACNA1S p.F780F SILENT 93 9 D - Dysplasia Brush chr2 27023801 C G MAPRE3 INTRON 90 8 D - Dysplasia Brush chr2 151694658 G T NEB INTRON 171 10 D - Dysplasia Brush chr2 215367814 G C FN1 INTRON 80 4 D - Dysplasia Brush chr4 16505951 T C LDB2 INTRON 289 7 D - Dysplasia Brush chr5 177398837 T C SLC34A1 THREE PRIME UTR 110 4 D - Dysplasia Brush chr6 123259849 C A TRDN INTRON 23 3 D - Dysplasia Brush chr7 77376829 G A GSAP INTRON 63 10 D - Dysplasia Brush chr7 100098909 G A MCM7 INTRON 29 4 D - Dysplasia Brush chr8 14108366 G A SGCZ INTRON 46 4 D - Dysplasia Brush chr8 75558695 G T HNF4G INTRON 94 10 D - Dysplasia Brush chr9 84723764 C T NTRK2 INTRON 96 11 D - Dysplasia Brush chr10 22389119 C G SPAG6 INTRON 39 3 D - Dysplasia Brush chr10 59251341 T G FAM13C INTRON 55 4 D - Dysplasia Brush chr10 60886213 C T RHOBTB1 p.D492N MISSENSE 374 7 D - Dysplasia Brush chr10 68437347 T C DNA2 INTRON 100 14 D - Dysplasia Brush chr11 18724298 C A IGSF22 INTRON 138 7 D - Dysplasia Brush chr11 61334524 T A TKFC INTRON 74 5 D - Dysplasia Brush chr11 86446652 C A ME3 INTRON 32 4 D - Dysplasia Brush chr12 3678762 C A CRACR2A INTRON 65 7 D - Dysplasia Brush chr12 121269639 G A CAMKK2 INTRON 178 20 D - Dysplasia Brush chr12 132021118 G C EP400 p.S1496T MISSENSE 145 14 D - Dysplasia Brush chr13 113118371 G A F7 INTRON 50 5 D - Dysplasia Brush chr14 52069019 G A NID2 FIVE PRIME UTR 45 7 D - Dysplasia Brush chr15 78625389 C T CHRNB4 INTRON 39 9 D - Dysplasia Brush chr17 4981236 C A CAMTA2 p.S235I MISSENSE 57 8 D - Dysplasia Brush chr17 82668136 C T RAB40B INTRON 96 8 D - Dysplasia Brush chr18 31546639 C G DSG2 p.L1085V MISSENSE 263 7 D - Dysplasia Brush chr20 59893428 C A SYCP2 INTRON 23 3 D - Dysplasia Brush chr21 45405314 C G COL18A1 INTRON 27 6 D - Dysplasia Brush chr21 45405320 C T COL18A1 INTRON 24 6 D - Dysplasia Brush chrX 32217062 G T DMD p.R2098R SPLICE SITE 141 6 D - Dysplasia Brush chrX 48832011 C T PCSK1N p.A149T MISSENSE 55 6 D - Dysplasia Brush chrX 101841736 C A NXF5 p.A60S MISSENSE 38 5 D - Dysplasia Brush chrX 124406155 G A TENM1 INTRON 52 3 D - Dysplasia Brush chrX 124523344 T G TENM1 INTRON 50 9 D - Dysplasia Brush chr1 11944438 C A PLOD1 INTRON 49 3 D - Dysplasia Brush chr1 50177202 G A ELAVL4 INTRON 175 1 D - Dysplasia Brush chr1 207124320 G A C4BPA p.E220E SILENT 410 1 D - Dysplasia Brush chr5 141137799 C T PCDHB5 p.R789W MISSENSE 338 1 D - Dysplasia Brush chr8 131040119 G A ADCY8 p.A72V MISSENSE 94 1 D - Dysplasia Brush chr11 108593317 C A EXPH5 INTRON 42 2 D - Dysplasia Brush chr12 124402547 C T NCOR2 p.Q499Q SILENT 105 1 D - Dysplasia Brush chr19 8334753 C T KANK3 p.L358L SILENT 80 2 D - Dysplasia Brush chr5 176868892 G A UNC5A p.A217T MISSENSE 343 1 D - Dysplasia Brush chr8 144524449 G T LRRC14 THREE PRIME UTR 243 1 D - Dysplasia Brush chr11 70943048 C A SHANK2 INTRON 127 1 D - Dysplasia Brush chr21 35047551 A T RUNX1 INTRON 22 2 E - OSCC Tissue chr8 100264599 A T RNF19A INTRON 92 1 E - OSCC Tissue chr12 131207428 G T LINC01257 RNA 25 2 E - OSCC Tissue chr16 67661881 C T PARD6A INTRON 215 1 E - OSCC Tissue chr2 43874517 A C ABCG8 INTRON 71 2 E - OSCC Tissue chr3 38789030 G T SCN10A p.F132L MISSENSE 236 1 E - OSCC Tissue chr3 129575839 C A PLXND1 p.C788F MISSENSE 284 1 E - OSCC Tissue chr5 123100026 C T PRDM6 INTRON 80 1 E - OSCC Tissue chr10 129842246 G A EBF3 p.S405S SILENT 313 1 E - OSCC Tissue chr12 4911468 C A KCNA1 p.H30Q MISSENSE 390 1 E - OSCC Tissue chr15 89628475 G A KIF7 p.R1326W MISSENSE 379 1 E - OSCC Tissue chr16 55326348 G A IRX6 p.A20T MISSENSE 173 1 E - OSCC Tissue chr1 6234822 C T ICMT INTRON 111 2 E - OSCC Tissue chr1 43981404 G A B4GALT2 p.V82I MISSENSE 158 12 E - OSCC Tissue chr1 51730005 A T OSBPL9 INTRON 85 10 E - OSCC Tissue chr1 181717042 C A CACNA1E INTRON 209 13 E - OSCC Tissue chr1 230265136 C T GALNT2 INTRON 177 9 E - OSCC Tissue chr2 24209084 C A ITSN2 INTRON 85 8 E - OSCC Tissue chr2 60461184 G A BCL11A p.A576A SILENT 407 31 E - OSCC Tissue chr2 99554283 C A AFF3 INTRON 82 10 E - OSCC Tissue chr2 189561836 C T SLC40A1 THREE PRIME UTR 299 14 E - OSCC Tissue chr3 12372029 G A PPARG INTRON 204 12 E - OSCC Tissue chr3 32818537 G A TRIM71 p.A153T MISSENSE 118 10 E - OSCC Tissue chr3 32954466 G A CCR4 p.T348T SILENT 118 9 E - OSCC Tissue chr3 47845757 G T DHX30 p.A305S MISSENSE 173 15 E - OSCC Tissue chr3 49108504 C T USP19 p.E1343K MISSENSE 91 7 E - OSCC Tissue chr3 57666039 T C DENND6A INTRON 51 1 E - OSCC Tissue chr3 75737669 A G ZNF717 p.C652R MISSENSE 153 3 E - OSCC Tissue chr3 102470358 G A ZPLD1 INTRON 165 19 E - OSCC Tissue chr3 121488686 C T POLQ p.P1415P SILENT 166 7 E - OSCC Tissue chr3 164341354 G A Unknown IGR 126 18 E - OSCC Tissue chr5 11384996 G A CTNND2 p.R282R SILENT 21 1 E - OSCC Tissue chr5 141357073 G A PCDHGA2 INTRON 332 18 E - OSCC Tissue chr5 151030446 C T TNIP1 THREE PRIME UTR 63 8 E - OSCC Tissue chr5 176862552 G A UNC5A INTRON 50 5 E - OSCC Tissue chr6 105124619 G T BVES p.N192K MISSENSE 64 7 E - OSCC Tissue chr6 136600982 C T MAP3K5 INTRON 41 5 E - OSCC Tissue chr6 138245613 G A ARFGEF3 INTRON 239 16 E - OSCC Tissue chr7 1762290 G T Unknown IGR 78 8 E - OSCC Tissue chr7 100628161 G A TFR2 INTRON 389 34 E - OSCC Tissue chr7 101234407 C T CLDN15 p.A85T MISSENSE 76 11 E - OSCC Tissue chr7 128840536 C A FLNC INTRON 258 36 E - OSCC Tissue chr7 144004310 T C OR6B1 p.I105T MISSENSE 449 44 E - OSCC Tissue chr8 68446695 C A C8orf34 INTRON 20 1 E - OSCC Tissue chr8 90063380 A G CALB1 INTRON 74 19 E - OSCC Tissue chr8 143870327 G C EPPK1 p.P976R MISSENSE 150 27 E - OSCC Tissue chr9 92250145 A G IARS1 INTRON 91 8 E - OSCC Tissue chr10 11952087 G A UPF2 p.R1005* NONSENSE 84 8 E - OSCC Tissue chr10 66926375 G A LRRTM3 FIVE PRIME UTR 82 7 E - OSCC Tissue chr10 74843222 A T KAT6B p.N122I MISSENSE 217 19 E - OSCC Tissue chr10 80078683 G A TMEM254 FIVE PRIME UTR 242 16 E - OSCC Tissue chr10 101770483 G A FGF8 p.T194M MISSENSE 246 41 E - OSCC Tissue chr10 102066548 G A HPS6 p.P358P SILENT 452 62 E - OSCC Tissue chr10 123154983 C G BUB3 p.F22L MISSENSE 360 31 E - OSCC Tissue chr11 22362932 A G SLC17A6 INTRON 58 5 E - OSCC Tissue chr11 65380282 G T SLC25A45 INTRON 84 10 E - OSCC Tissue chr11 67255330 C T KDM2A THREE PRIME UTR 118 12 E - OSCC Tissue chr12 6587577 C A CHD4 INTRON 244 23 E - OSCC Tissue chr12 21306896 G A SLCO1A2 p.T11M MISSENSE 242 27 E - OSCC Tissue chr12 21910225 C T ABCC9 p.A418T MISSENSE 145 10 E - OSCC Tissue chr13 24710910 C G ATP12A INTRON 99 5 E - OSCC Tissue chr13 33055174 G A KL p.K486K SILENT 236 19 E - OSCC Tissue chr13 99643006 G T CLYBL INTRON 113 8 E - OSCC Tissue chr13 113082558 C T MCF2L INTRON 218 18 E - OSCC Tissue chr14 21084740 T G ARHGEF40 INTRON 30 5 E - OSCC Tissue chr14 46651253 G A RPL10L p.R162C MISSENSE 316 26 E - OSCC Tissue chr14 49621773 T G MGAT2 p.F169V MISSENSE 615 57 E - OSCC Tissue chr14 104884061 G A CEP170B p.G428R MISSENSE 279 1 E - OSCC Tissue chr15 59231805 T C MYO1E INTRON 140 9 E - OSCC Tissue chr15 65661837 C A DENND4A THREE PRIME UTR 102 10 E - OSCC Tissue chr15 79970807 G A BCL2A1 p.R105* NONSENSE 456 40 E - OSCC Tissue chr16 2084788 C T TSC2 INTRON 73 4 E - OSCC Tissue chr16 81179727 G A PKD1L2 RNA 128 6 E - OSCC Tissue chr16 88489139 C T ZFPM1 p.P85L MISSENSE 190 24 E - OSCC Tissue chr17 7670654 T A TP53 p.D352V MISSENSE 123 26 E - OSCC Tissue chr17 7673821 G A TP53 p.R267W MISSENSE 86 24 E - OSCC Tissue chr17 21416186 G A KCNJ12 p.G282S MISSENSE 200 20 E - OSCC Tissue chr17 39184292 G A CACNB1 INTRON 287 29 E - OSCC Tissue chr17 75758481 G A GALK1 p.G304G SILENT 221 1 E - OSCC Tissue chr18 5891344 C T TMEM200C p.A240A SILENT 49 6 E - OSCC Tissue chr20 49233691 C T DDX27 p.R450W MISSENSE 197 16 E - OSCC Tissue chr21 45505412 C T COL18A1 p.T1203I MISSENSE 319 13 E - OSCC Tissue chrX 111246624 G A CAPN6 p.H627Y MISSENSE 169 16 E - OSCC Tissue chrX 141626346 T A SPANXA2-OT1 RNA 178 2 E - OSCC Tissue chr2 27023801 C G MAPRE3 INTRON 85 6 E - OSCC Tissue chr2 151694658 G T NEB INTRON 155 17 E - OSCC Tissue chr2 215367814 G C FN1 INTRON 72 2 E - OSCC Tissue chr7 100098909 G A MCM7 INTRON 26 6 E - OSCC Tissue chr8 14108366 G A SGCZ INTRON 49 6 E - OSCC Tissue chr8 75558695 G T HNF4G INTRON 82 6 E - OSCC Tissue chr9 84723764 C T NTRK2 INTRON 91 10 E - OSCC Tissue chr10 68437347 T C DNA2 INTRON 103 9 E - OSCC Tissue chr11 18724298 C A IGSF22 INTRON 120 10 E - OSCC Tissue chr11 86446652 C A ME3 INTRON 32 3 E - OSCC Tissue chr12 3678762 C A CRACR2A INTRON 57 8 E - OSCC Tissue chr12 132021118 G C EP400 p.S1496T MISSENSE 155 10 E - OSCC Tissue chr15 78625389 C T CHRNB4 INTRON 36 6 E - OSCC Tissue chr17 4981236 C A CAMTA2 p.S235I MISSENSE 42 8 E - OSCC Tissue chr20 59893428 C A SYCP2 INTRON 16 4 E - OSCC Tissue chr21 45405314 C G COL18A1 INTRON 38 8 E - OSCC Tissue chr21 45405320 C T COL18A1 INTRON 38 7 E - OSCC Tissue chrX 101841736 C A NXF5 p.A60S MISSENSE 43 5 E - OSCC Tissue chrX 124406155 G A TENM1 INTRON 42 5 E - OSCC Tissue chrX 124523344 T G TENM1 INTRON 55 5 E - OSCC Tissue chr1 11944438 C A PLOD1 INTRON 33 3 E - OSCC Tissue chr1 42929815 G C SLC2A1 INTRON 152 6 E - OSCC Tissue chr1 50177202 G A ELAVL4 INTRON 180 5 E - OSCC Tissue chr1 52239133 C T ZFYVE9 p.I572I SILENT 186 9 E - OSCC Tissue chr1 52239436 C G ZFYVE9 p.L673L SILENT 304 16 E - OSCC Tissue chr1 161043503 G C USF1 INTRON 65 4 E - OSCC Tissue chr1 171579713 G A PRRC2C INTRON 63 3 E - OSCC Tissue chr1 185925005 C G HMCN1 INTRON 100 3 E - OSCC Tissue chr1 207124320 G A C4BPA p.E220E SILENT 354 17 E - OSCC Tissue chr2 27152588 G A TCF23 INTRON 26 3 E - OSCC Tissue chr2 79858260 C A CTNNA2 INTRON 106 11 E - OSCC Tissue chr2 137618642 T G THSD7B INTRON 38 5 E - OSCC Tissue chr2 140776043 A C LRP1B INTRON 44 5 E - OSCC Tissue chr2 140813729 C T LRP1B p.D1763N MISSENSE 158 7 E - OSCC Tissue chr2 151493942 G T NEB INTRON 130 5 E - OSCC Tissue chr3 14923045 G A FGD5 SPLICE SITE 200 6 E - OSCC Tissue chr3 41227372 C T CTNNB1 INTRON 70 3 E - OSCC Tissue chr3 66998360 C T KBTBD8 p.A2V MISSENSE 77 3 E - OSCC Tissue chr3 113327795 C A CFAP44 p.D1381Y MISSENSE 87 5 E - OSCC Tissue chr3 189974603 G A P3H2 p.N469N SILENT 102 10 E - OSCC Tissue chr4 38015047 G A TBC1D1 INTRON 173 7 E - OSCC Tissue chr5 23526759 T G PRDM9 p.C557W MISSENSE 346 26 E - OSCC Tissue chr5 141137799 C T PCDHB5 p.R789W MISSENSE 314 37 E - OSCC Tissue chr5 160644245 C A ATP10B SPLICE SITE 88 6 E - OSCC Tissue chr6 142409980 G C ADGRG6 INTRON 166 6 E - OSCC Tissue chr7 87770609 G C RUNDC3B p.E220Q MISSENSE 73 5 E - OSCC Tissue chr7 92493117 C G PEX1 p.E958Q MISSENSE 56 3 E - OSCC Tissue chr7 99672852 C G CYP3A5 INTRON 49 4 E - OSCC Tissue chr7 100861938 C G SLC12A9 INTRON 50 4 E - OSCC Tissue chr8 54628636 G T RP1 INTRON 272 27 E - OSCC Tissue chr8 71215664 G A EYA1 p.T475T SILENT 262 17 E - OSCC Tissue chr8 98596009 C T STK3 INTRON 153 4 E - OSCC Tissue chr8 109420463 G A PKHD1L1 INTRON 36 3 E - OSCC Tissue chr8 131040119 G A ADCY8 p.A72V MISSENSE 97 9 E - OSCC Tissue chr10 119454960 C A GRK5 INTRON 83 8 E - OSCC Tissue chr11 6846135 C T OR10A5 p.F151F SILENT 468 45 E - OSCC Tissue chr11 58119343 G A OR9I1 p.F34F SILENT 159 6 E - OSCC Tissue chr11 65211342 C T CAPN1 THREE PRIME UTR 404 34 E - OSCC Tissue chr11 72232514 G A INPPL1 INTRON 128 4 E - OSCC Tissue chr11 108593317 C A EXPH5 INTRON 35 4 E - OSCC Tissue chr11 111451301 G T AP002008.2 RNA 164 16 E - OSCC Tissue chr11 120240262 G T POU2F3 FIVE PRIME UTR 81 6 E - OSCC Tissue chr11 120330431 G A TLCD5 p.K218K SILENT 457 10 E - OSCC Tissue chr12 925536 G C RAD52 INTRON 100 4 E - OSCC Tissue chr12 6773870 G A LAG3 p.R127Q MISSENSE 38 2 E - OSCC Tissue chr12 40939429 A G CNTN1 p.A441A SILENT 109 6 E - OSCC Tissue chr12 48559878 C T OR5BS1P FIVE PRIME FLANK 226 15 E - OSCC Tissue chr12 64128000 C T SRGAP1 p.R894W MISSENSE 489 23 E - OSCC Tissue chr12 76068942 C T NAP1L1 p.E24K MISSENSE 173 6 E - OSCC Tissue chr12 116022677 G A MED13L INTRON 128 4 E - OSCC Tissue chr12 124402547 C T NCOR2 p.Q499Q SILENT 89 3 E - OSCC Tissue chr13 57635079 G A PCDH17 p.E845K MISSENSE 414 35 E - OSCC Tissue chr13 75306363 C T TBC1D4 p.R901K MISSENSE 232 6 E - OSCC Tissue chr14 64767340 C G SPTB p.E2078Q MISSENSE 416 31 E - OSCC Tissue chr14 64767349 C G SPTB p.E2075Q MISSENSE 365 26 E - OSCC Tissue chr15 41989467 G A PLA2G4E p.F557F SILENT 270 14 E - OSCC Tissue chr16 88437176 C T ZNF469 p.P3236S MISSENSE 163 12 E - OSCC Tissue chr19 8334753 C T KANK3 p.L358L SILENT 73 8 E - OSCC Tissue chr20 277159 G T C20orf96 INTRON 283 42 E - OSCC Tissue chr20 41489852 C A CHD6 p.A536S MISSENSE 228 3 E - OSCC Tissue chr20 43568040 C G SGK2 INTRON 78 5 E - OSCC Tissue chr20 45309836 C T RBPJL INTRON 72 5 E - OSCC Tissue chr20 59192393 G A ZNF831 p.A458A SILENT 643 94 E - OSCC Tissue chrX 23907893 C T APOO FIVE PRIME UTR 50 11 E - OSCC Tissue chrX 30308671 C T NR0B1 p.P231P SILENT 230 11 E - OSCC Tissue chrX 34943541 C T FAM47B p.P237L MISSENSE 288 41 E - OSCC Tissue chrX 38287239 G A AF241726.2 INTRON 559 22 E - OSCC Tissue chrX 130015372 C T BCORL1 p.S867L MISSENSE 368 40 E - OSCC Tissue chrX 152190027 G A GABRA3 INTRON 39 4 E - OSCC Tissue chr2 70831127 G A CD207 p.Q304* NONSENSE 194 1 E - OSCC Tissue chr3 6861494 G A GRM7 p.E36K MISSENSE 206 1 E - OSCC Tissue chr5 6633775 C T SRD5A1 p.P67S MISSENSE 173 1 E - OSCC Tissue chr5 131976546 A G ACSL6 INTRON 26 3 E - OSCC Tissue chr5 148091291 A G SPINK5 INTRON 33 1 E - OSCC Tissue chr7 66994306 G A SBDS p.S55L MISSENSE 166 1 E - OSCC Tissue chr7 141838035 G T PRSS37 p.I85I SILENT 524 2 E - OSCC Tissue chr8 109557809 C G EBAG9 INTRON 194 2 E - OSCC Tissue chr8 144524449 G T LRRC14 THREE PRIME UTR 257 3 E - OSCC Tissue chr11 1236911 C G MUC5B INTRON 437 2 E - OSCC Tissue chr11 70943048 C A SHANK2 INTRON 121 2 E - OSCC Tissue chr12 7137106 G A CLSTN3 p.Q402Q SILENT 332 3 E - OSCC Tissue chr12 56267516 C T COQ10A INTRON 192 1 E - OSCC Tissue chr12 128695942 G A TMEM132C p.A590T MISSENSE 133 1 E - OSCC Tissue chr13 97992905 C T IPO5 p.S228L MISSENSE 239 4 E - OSCC Tissue chr21 35047551 A T RUNX1 INTRON 21 6 E - OSCC Tissue chrX 27980777 G A DCAF8L1 p.F186F SILENT 595 1 F - OSCC Brush chr12 106711386 C T RFX4 INTRON 138 1 F - OSCC Brush chr12 131207428 G T LINC01257 RNA 23 6 F - OSCC Brush chr20 45110658 C A WFDC5 p.R68L MISSENSE 335 1 F - OSCC Brush chr2 105399175 G T FHL2 FIVE PRIME UTR 305 1 F - OSCC Brush chr12 4911468 C A KCNA1 p.H30Q MISSENSE 400 1 F - OSCC Brush chr12 6581539 A C CHD4 INTRON 262 1 F - OSCC Brush chr12 111320052 C T CUX2 p.N681N SILENT 257 1 F - OSCC Brush chr21 36767299 G A HLCS INTRON 182 1 F - OSCC Brush chrX 141907612 C A MAGEC1 p.F736L MISSENSE 440 2 F - OSCC Brush chr1 6234822 C T ICMT INTRON 115 2 F - OSCC Brush chr1 43981404 G A B4GALT2 p.V82I MISSENSE 194 10 F - OSCC Brush chr1 51730005 A T OSBPL9 INTRON 112 13 F - OSCC Brush chr1 181717042 C A CACNA1E INTRON 195 8 F - OSCC Brush chr1 228274197 C T OBSCN p.C2187C SILENT 197 1 F - OSCC Brush chr1 230265136 C T GALNT2 INTRON 162 5 F - OSCC Brush chr2 24209084 C A ITSN2 INTRON 73 6 F - OSCC Brush chr2 60461184 G A BCL11A p.A576A SILENT 434 36 F - OSCC Brush chr2 99554283 C A AFF3 INTRON 96 4 F - OSCC Brush chr2 189561836 C T SLC40A1 THREE PRIME UTR 302 15 F - OSCC Brush chr3 12372029 G A PPARG INTRON 214 14 F - OSCC Brush chr3 32818537 G A TRIM71 p.A153T MISSENSE 125 12 F - OSCC Brush chr3 32954466 G A CCR4 p.T348T SILENT 115 7 F - OSCC Brush chr3 47845757 G T DHX30 p.A305S MISSENSE 192 7 F - OSCC Brush chr3 49108504 C T USP19 p.E1343K MISSENSE 107 6 F - OSCC Brush chr3 57666039 T C DENND6A INTRON 56 2 F - OSCC Brush chr3 75737669 A G ZNF717 p.C652R MISSENSE 148 3 F - OSCC Brush chr3 102470358 G A ZPLD1 INTRON 189 12 F - OSCC Brush chr3 121488686 C T POLQ p.P1415P SILENT 189 6 F - OSCC Brush chr3 164341354 G A Unknown IGR 146 4 F - OSCC Brush chr5 11384996 G A CTNND2 p.R282R SILENT 26 4 F - OSCC Brush chr5 140303069 G A PFDN1 p.A2V MISSENSE 223 1 F - OSCC Brush chr5 141357073 G A PCDHGA2 INTRON 324 15 F - OSCC Brush chr5 151030446 C T TNIP1 THREE PRIME UTR 76 5 F - OSCC Brush chr5 176862552 G A UNC5A INTRON 51 3 F - OSCC Brush chr6 105124619 G T BVES p.N192K MISSENSE 50 1 F - OSCC Brush chr6 136600982 C T MAP3K5 INTRON 61 4 F - OSCC Brush chr6 138245613 G A ARFGEF3 INTRON 213 14 F - OSCC Brush chr7 1762290 G T Unknown IGR 86 10 F - OSCC Brush chr7 100628161 G A TFR2 INTRON 421 21 F - OSCC Brush chr7 101234407 C T CLDN15 p.A85T MISSENSE 85 10 F - OSCC Brush chr7 128840536 C A FLNC INTRON 289 16 F - OSCC Brush chr7 144004310 T C OR6B1 p.I105T MISSENSE 425 34 F - OSCC Brush chr7 149765009 C T ZNF467 p.R498H MISSENSE 132 1 F - OSCC Brush chr8 90063380 A G CALB1 INTRON 98 10 F - OSCC Brush chr8 143870327 G C EPPK1 p.P976R MISSENSE 177 12 F - OSCC Brush chr9 92250145 A G IARS1 INTRON 95 7 F - OSCC Brush chr10 11952087 G A UPF2 p.R1005* NONSENSE 83 6 F - OSCC Brush chr10 66926375 G A LRRTM3 FIVE PRIME UTR 99 8 F - OSCC Brush chr10 74843222 A T KAT6B p.N122I MISSENSE 215 12 F - OSCC Brush chr10 80078683 G A TMEM254 FIVE PRIME UTR 222 24 F - OSCC Brush chr10 101770483 G A FGF8 p.T194M MISSENSE 255 14 F - OSCC Brush chr10 102066548 G A HPS6 p.P358P SILENT 522 38 F - OSCC Brush chr10 123154983 C G BUB3 p.F22L MISSENSE 410 36 F - OSCC Brush chr11 22362932 A G SLC17A6 INTRON 44 6 F - OSCC Brush chr11 65380282 G T SLC25A45 INTRON 79 1 F - OSCC Brush chr11 67255330 C T KDM2A THREE PRIME UTR 128 9 F - OSCC Brush chr12 6587577 C A CHD4 INTRON 232 28 F - OSCC Brush chr12 21306896 G A SLCO1A2 p.T11M MISSENSE 257 26 F - OSCC Brush chr12 21910225 C T ABCC9 p.A418T MISSENSE 154 11 F - OSCC Brush chr13 24710910 C G ATP12A INTRON 113 11 F - OSCC Brush chr13 33055174 G A KL p.K486K SILENT 259 13 F - OSCC Brush chr13 99643006 G T CLYBL INTRON 115 9 F - OSCC Brush chr13 113082558 C T MCF2L INTRON 223 7 F - OSCC Brush chr14 21084740 T G ARHGEF40 INTRON 45 4 F - OSCC Brush chr14 30911074 G A STRN3 p.P479S MISSENSE 205 1 F - OSCC Brush chr14 46651253 G A RPL10L p.R162C MISSENSE 318 18 F - OSCC Brush chr14 49621773 T G MGAT2 p.F169V MISSENSE 700 40 F - OSCC Brush chr15 59231805 T C MYO1E INTRON 119 7 F - OSCC Brush chr15 65661837 C A DENND4A THREE PRIME UTR 117 5 F - OSCC Brush chr15 79970807 G A BCL2A1 p.R105* NONSENSE 498 42 F - OSCC Brush chr16 2084788 C T TSC2 INTRON 70 4 F - OSCC Brush chr16 81179727 G A PKD1L2 RNA 107 12 F - OSCC Brush chr16 88489139 C T ZFPM1 p.P85L MISSENSE 228 15 F - OSCC Brush chr17 7670654 T A TP53 p.D352V MISSENSE 162 31 F - OSCC Brush chr17 7673821 G A TP53 p.R267W MISSENSE 105 16 F - OSCC Brush chr17 21416186 G A KCNJ12 p.G282S MISSENSE 222 14 F - OSCC Brush chr17 39184292 G A CACNB1 INTRON 298 30 F - OSCC Brush chr18 5891344 C T TMEM200C p.A240A SILENT 40 4 F - OSCC Brush chr20 49233691 C T DDX27 p.R450W MISSENSE 193 17 F - OSCC Brush chr21 45505412 C T COL18A1 p.T1203I MISSENSE 409 21 F - OSCC Brush chrX 34131415 G A FAM47A p.D288D SILENT 406 1 F - OSCC Brush chrX 111246624 G A CAPN6 p.H627Y MISSENSE 168 27 F - OSCC Brush chr2 27023801 C G MAPRE3 INTRON 80 8 F - OSCC Brush chr2 151694658 G T NEB INTRON 148 11 F - OSCC Brush chr2 215367814 G C FN1 INTRON 56 2 F - OSCC Brush chr7 100098909 G A MCM7 INTRON 24 1 F - OSCC Brush chr8 14108366 G A SGCZ INTRON 46 3 F - OSCC Brush chr8 75558695 G T HNF4G INTRON 97 3 F - OSCC Brush chr9 84723764 C T NTRK2 INTRON 91 7 F - OSCC Brush chr10 68437347 T C DNA2 INTRON 114 9 F - OSCC Brush chr11 18724298 C A IGSF22 INTRON 106 11 F - OSCC Brush chr11 86446652 C A ME3 INTRON 41 3 F - OSCC Brush chr12 3678762 C A CRACR2A INTRON 60 2 F - OSCC Brush chr12 132021118 G C EP400 p.S1496T MISSENSE 133 14 F - OSCC Brush chr15 78625389 C T CHRNB4 INTRON 35 4 F - OSCC Brush chr17 4981236 C A CAMTA2 p.S235I MISSENSE 39 5 F - OSCC Brush chr20 59893428 C A SYCP2 INTRON 23 3 F - OSCC Brush chr21 45405314 C G COL18A1 INTRON 34 8 F - OSCC Brush chr21 45405320 C T COL18A1 INTRON 32 8 F - OSCC Brush chrX 101841736 C A NXF5 p.A60S MISSENSE 45 5 F - OSCC Brush chrX 124406155 G A TENM1 INTRON 36 3 F - OSCC Brush chrX 124523344 T G TENM1 INTRON 36 4 F - OSCC Brush chr1 11944438 C A PLOD1 INTRON 50 1 F - OSCC Brush chr1 42929815 G C SLC2A1 INTRON 169 8 F - OSCC Brush chr1 50177202 G A ELAVL4 INTRON 161 12 F - OSCC Brush chr1 52239133 C T ZFYVE9 p.I572I SILENT 200 5 F - OSCC Brush chr1 52239436 C G ZFYVE9 p.L673L SILENT 283 16 F - OSCC Brush chr1 161043503 G C USF1 INTRON 58 2 F - OSCC Brush chr1 171579713 G A PRRC2C INTRON 37 2 F - OSCC Brush chr1 185925005 C G HMCN1 INTRON 105 4 F - OSCC Brush chr1 207124320 G A C4BPA p.E220E SILENT 367 7 F - OSCC Brush chr2 27152588 G A TCF23 INTRON 35 2 F - OSCC Brush chr2 79858260 C A CTNNA2 INTRON 100 8 F - OSCC Brush chr2 140776043 A C LRP1B INTRON 45 5 F - OSCC Brush chr2 140813729 C T LRP1B p.D1763N MISSENSE 179 10 F - OSCC Brush chr2 151493942 G T NEB INTRON 136 7 F - OSCC Brush chr3 14923045 G A FGD5 SPLICE SITE 239 9 F - OSCC Brush chr3 41227372 C T CTNNB1 INTRON 75 3 F - OSCC Brush chr3 66998360 C T KBTBD8 p.A2V MISSENSE 98 2 F - OSCC Brush chr3 113327795 C A CFAP44 p.D1381Y MISSENSE 96 2 F - OSCC Brush chr3 189974603 G A P3H2 p.N469N SILENT 119 7 F - OSCC Brush chr4 38015047 G A TBC1D1 INTRON 138 7 F - OSCC Brush chr5 23526759 T G PRDM9 p.C557W MISSENSE 364 16 F - OSCC Brush chr5 141137799 C T PCDHB5 p.R789W MISSENSE 344 22 F - OSCC Brush chr5 160644245 C A ATP10B SPLICE SITE 64 11 F - OSCC Brush chr6 142409980 G C ADGRG6 INTRON 173 7 F - OSCC Brush chr7 87770609 G C RUNDC3B p.E220Q MISSENSE 96 3 F - OSCC Brush chr7 92493117 C G PEX1 p.E958Q MISSENSE 41 2 F - OSCC Brush chr7 99672852 C G CYP3A5 INTRON 62 1 F - OSCC Brush chr7 100861938 C G SLC12A9 INTRON 53 3 F - OSCC Brush chr8 54628636 G T RP1 INTRON 248 8 F - OSCC Brush chr8 71215664 G A EYA1 p.T475T SILENT 248 20 F - OSCC Brush chr8 98596009 C T STK3 INTRON 100 5 F - OSCC Brush chr8 131040119 G A ADCY8 p.A72V MISSENSE 103 8 F - OSCC Brush chr10 119454960 C A GRK5 INTRON 97 8 F - OSCC Brush chr11 6846135 C T OR10A5 p.F151F SILENT 432 36 F - OSCC Brush chr11 58119343 G A OR9I1 p.F34F SILENT 182 6 F - OSCC Brush chr11 65211342 C T CAPN1 THREE PRIME UTR 452 33 F - OSCC Brush chr11 72232514 G A INPPL1 INTRON 135 7 F - OSCC Brush chr11 108593317 C A EXPH5 INTRON 34 2 F - OSCC Brush chr11 111451301 G T AP002008.2 RNA 172 12 F - OSCC Brush chr11 120240262 G T POU2F3 FIVE PRIME UTR 96 7 F - OSCC Brush chr11 120330431 G A TLCD5 p.K218K SILENT 363 9 F - OSCC Brush chr12 925536 G C RAD52 INTRON 100 4 F - OSCC Brush chr12 6773870 G A LAG3 p.R127Q MISSENSE 58 3 F - OSCC Brush chr12 40939429 A G CNTN1 p.A441A SILENT 103 2 F - OSCC Brush chr12 48559878 C T OR5BS1P FIVE PRIME FLANK 252 9 F - OSCC Brush chr12 64128000 C T SRGAP1 p.R894W MISSENSE 466 8 F - OSCC Brush chr12 76068942 C T NAP1L1 p.E24K MISSENSE 181 5 F - OSCC Brush chr12 116022677 G A MED13L INTRON 121 9 F - OSCC Brush chr12 124402547 C T NCOR2 p.Q499Q SILENT 123 3 F - OSCC Brush chr13 57635079 G A PCDH17 p.E845K MISSENSE 407 35 F - OSCC Brush chr13 75306363 C T TBC1D4 p.R901K MISSENSE 247 4 F - OSCC Brush chr14 64767340 C G SPTB p.E2078Q MISSENSE 377 14 F - OSCC Brush chr14 64767349 C G SPTB p.E2075Q MISSENSE 339 13 F - OSCC Brush chr15 41989467 G A PLA2G4E p.F557F SILENT 280 9 F - OSCC Brush chr16 88437176 C T ZNF469 p.P3236S MISSENSE 199 11 F - OSCC Brush chr19 8334753 C T KANK3 p.L358L SILENT 87 3 F - OSCC Brush chr20 277159 G T C20orf96 INTRON 346 31 F - OSCC Brush chr20 41489852 C A CHD6 p.A536S MISSENSE 207 3 F - OSCC Brush chr20 43568040 C G SGK2 INTRON 95 2 F - OSCC Brush chr20 45309836 C T RBPJL INTRON 93 3 F - OSCC Brush chr20 59192393 G A ZNF831 p.A458A SILENT 710 95 F - OSCC Brush chrX 23907893 C T APOO FIVE PRIME UTR 63 12 F - OSCC Brush chrX 30308671 C T NR0B1 p.P231P SILENT 299 14 F - OSCC Brush chrX 34943541 C T FAM47B p.P237L MISSENSE 279 46 F - OSCC Brush chrX 38287239 G A AF241726.2 INTRON 588 15 F - OSCC Brush chrX 130015372 C T BCORL1 p.S867L MISSENSE 417 36 F - OSCC Brush chrX 152190027 G A GABRA3 INTRON 61 1 F - OSCC Brush chr1 157689698 C A FCRL3 INTRON 90 3 F - OSCC Brush chr1 174988667 C A RABGAP1L p.C263* NONSENSE 180 3 F - OSCC Brush chr1 227775943 G A SNAP47 INTRON 311 3 F - OSCC Brush chr2 70831127 G A CD207 p.Q304* NONSENSE 236 7 F - OSCC Brush chr3 6861494 G A GRM7 p.E36K MISSENSE 183 7 F - OSCC Brush chr3 19346747 C A KCNH8 INTRON 117 3 F - OSCC Brush chr4 7054727 G A TADA2B p.R312R SILENT 264 3 F - OSCC Brush chr5 6633775 C T SRD5A1 p.P67S MISSENSE 183 3 F - OSCC Brush chr5 13913619 T G DNAH5 INTRON 21 3 F - OSCC Brush chr5 131976546 A G ACSL6 INTRON 41 5 F - OSCC Brush chr5 148091291 A G SPINK5 INTRON 24 3 F - OSCC Brush chr5 176868892 G A UNC5A p.A217T MISSENSE 306 4 F - OSCC Brush chr7 66994306 G A SBDS p.S55L MISSENSE 149 4 F - OSCC Brush chr7 75611605 G A HIP1 INTRON 64 3 F - OSCC Brush chr7 141838035 G T PRSS37 p.I85I SILENT 445 16 F - OSCC Brush chr7 151221852 T G ABCF2 INTRON 42 3 F - OSCC Brush chr8 109557809 C G EBAG9 INTRON 179 5 F - OSCC Brush chr8 144333287 G C SCRT1 p.L315L SILENT 269 6 F - OSCC Brush chr8 144524449 G T LRRC14 THREE PRIME UTR 250 9 F - OSCC Brush chr11 1236911 C G MUC5B INTRON 505 9 F - OSCC Brush chr11 70943048 C A SHANK2 INTRON 103 3 F - OSCC Brush chr12 7137106 G A CLSTN3 p.Q402Q SILENT 334 5 F - OSCC Brush chr12 50734192 G T DIP2B p.D1347Y MISSENSE 227 3 F - OSCC Brush chr12 56267516 C T COQ10A INTRON 205 4 F - OSCC Brush chr12 123465467 G A SNRNP35 INTRON 108 3 F - OSCC Brush chr12 128695942 G A TMEM132C p.A590T MISSENSE 161 4 F - OSCC Brush chr13 94711268 C T SOX21 p.G261D MISSENSE 113 3 F - OSCC Brush chr13 97992905 C T IPO5 p.S228L MISSENSE 237 4 F - OSCC Brush chr14 49805971 C T NEMF INTRON 164 4 F - OSCC Brush chr14 50342983 C T CDKL1 INTRON 68 3 F - OSCC Brush chr16 72063413 C A HPR INTRON 178 3 F - OSCC Brush chr16 81133461 C A PKD1L2 RNA 86 3 F - OSCC Brush chr18 59900615 G A PMAIP1 INTRON 235 4 F - OSCC Brush chr20 62709243 C A NTSR1 p.G12G SILENT 111 3 F - OSCC Brush chr21 35047551 A T RUNX1 INTRON 37 8 F - OSCC Brush chr21 43032225 C A PKNOX1 THREE PRIME UTR 187 3 F - OSCC Brush chrX 27980777 G A DCAF8L1 p.F186F SILENT 504 22 A - Normal Buccal Tissue chr1 48591081 CACCCACCCACCCCCCCC - AGBL4 INTRON 15 2 A - Normal Buccal Tissue chr1 86382383 - A ODF2L INTRON 189 64 A - Normal Buccal Tissue chr2 20651179 GC TT HS1BP3 FIVE PRIME FLANK 8 2 A - Normal Buccal Tissue chr2 26311663 A - ADGRF3 p.S490fs FRAME SHIFT INDEL 453 22 A - Normal Buccal Tissue chr7 92099797 - T AKAP9 p.L3609fs FRAME SHIFT INDEL 278 8 A - Normal Buccal Tissue chr11 59657672 - G PATL1 p.Q160fs FRAME SHIFT INDEL 203 36 A - Normal Buccal Tissue chr11 67519163 CT - CABP2 p.E156fs SPLICE SITE 488 23 A - Normal Buccal Tissue chr13 69838889 - T KLHL1 INTRON 73 11 A - Normal Buccal Tissue chr16 4614416 - T UBALD1 INTRON 30 7 A - Normal Buccal Tissue chr17 66965195 CGCGCGCGCGCGCG - CACNG4 INTRON 92 3 A - Normal Buccal Tissue chr19 14663395 A - ADGRE3 INTRON 24 6 B - Normal Buccal Brush chr1 155763590 ATA - GON4L INTRON 547 10 B - Normal Buccal Brush chr1 183226948 G - LAMC2 INTRON 114 4 B - Normal Buccal Brush chr1 183226953 GTCATGTGGAAGA - LAMC2 INTRON 114 4 B - Normal Buccal Brush chr2 233690757 ACAT - UGT1A10 INTRON 59 7 B - Normal Buccal Brush chr3 52381630 - CCTAA DNAH1 INTRON 197 18 B - Normal Buccal Brush chr3 52381631 - CAACGCCGCCCTCGAATCCGGCGAAAACCAAGCAGGCGCAGGCGAAAAAGCCGTCCAACTCATGACCGTCCATGCCGCCAAAGGCCTGGAATTCAACGCC DNAH1 INTRON 198 18 B - Normal Buccal Brush chr5 119129352 - CT DMXL1 p.K415fs FRAME SHIFT INDEL 195 6 B - Normal Buccal Brush chr6 42968402 GGACT - PEX6 p.L526fs FRAME SHIFT INDEL 457 17 B - Normal Buccal Brush chr6 124963219 - AATAAA RNF217 p.225_226insNK IN FRAME INDEL 521 12 B - Normal Buccal Brush chr6 124963221 - TGAAACCTTAATTTTGGATGCCGCGCTTGAAGGCGAAGGTACACGCGAAGCGGTGGGTTTGGACTACCGCGATTTGCCGAATGACGTCGTTGCCGGTGAT RNF217 p.E226fs FRAME SHIFT INDEL 522 12 B - Normal Buccal Brush chr6 167826425 AGCACCGCCCATCGGACCCAGCAGCGCCCATTTAGACCTAGCACCGCCCGTCCGAACCGAACAT - AFDN FIVE PRIME FLANK 698 5 B - Normal Buccal Brush chr7 73576458 CA TG TBL2 INTRON 20 2 B - Normal Buccal Brush chr7 103496530 ATCAAAAGTGTCCACCAATTGGCTGGG - RELN p.PSQLVDTFD3055del IN FRAME INDEL 434 10 B - Normal Buccal Brush chr9 130092119 TG CA GPR107 INTRON 26 3 B - Normal Buccal Brush chr12 131910779 - AACTACAGCTACAGGTGCAGCAGCAGTTACTCCGAATTCTTCTTCAATTGCTTT ULK1 p.309_310insNYSYRCSSSYSEFFFNCF IN FRAME INDEL 134 5 B - Normal Buccal Brush chr14 64338624 CCCGCGAGGCCGCCCCGTCCCCCTCCCCGCAGACCGCCCCCCCTCCCCGCAGACCGCCCCGTCCACCC - ESR2 FIVE PRIME FLANK 28 2 B - Normal Buccal Brush chr15 25191655 G - SNHG14 RNA 120 4 B - Normal Buccal Brush chr16 67281246 GG AA PLEKHG4 INTRON 114 2 B - Normal Buccal Brush chr19 3643156 GCGGATGCCCCGCCCACATGCAGTGAATGCCCCGCCCCCACGCACAGCGGATGCCCCGCCCACATGCACT - PIP5K1C INTRON 396 3 B - Normal Buccal Brush chr19 12319773 A - ZNF563 p.F84fs FRAME SHIFT INDEL 654 30 B - Normal Buccal Brush chr19 50225792 GT CC MYH14 INTRON 41 2 B - Normal Buccal Brush chr22 29140268 TT - KREMEN1 INTRON 311 6 B - Normal Buccal Brush chr22 37139388 GG AA IL2RB INTRON 9 2 C - Dysplasia Tissue chr1 48591064 CACACACCCCCCACACACACCCACCCACCCCCCCC - AGBL4 INTRON 27 2 C - Dysplasia Tissue chr2 53928367 TAAATATAATAAATTCA - PSME4 INTRON 18 2 C - Dysplasia Tissue chr2 229767771 GA AG TRIP12 INTRON 75 3 C - Dysplasia Tissue chr3 57666046 G - DENND6A INTRON 138 7 C - Dysplasia Tissue chr4 5708419 CCGAGACAGC - EVC2 p.G29fs FRAME SHIFT INDEL 39 3 C - Dysplasia Tissue chr4 5708431 CGGCCCCCCAGCGCCAGGGCCACTGCCAG - EVC2 p.L19fs FRAME SHIFT INDEL 50 3 C - Dysplasia Tissue chr6 113860429 CGCCGCCG - MARCKS p.A285fs FRAME SHIFT INDEL 80 5 C - Dysplasia Tissue chr8 112690005 CC AT CSMD3 p.G673I MISSENSE 310 12 C - Dysplasia Tissue chr12 112938525 GC CA OAS3 FIVE PRIME UTR 29 2 C - Dysplasia Tissue chr12 121467017 CGGCCGCCCCGCCGGCAGCGGCAGCAAAACTTTCTCCTCATCGCGGCGGCGGCGGCGTCG - KDM2B INTRON 73 2 C - Dysplasia Tissue chr16 778657 - GGGACCTGCAGCAAGGCCAGCCTCTGGATTAGGGCTGAGAGCTGCCCC MSLNL p.88_89insGQLSALIQRLALLQVP IN FRAME INDEL 32 2 C - Dysplasia Tissue chr18 50056669 TCACCTGTGCACATGCGGC - MYO5B INTRON 121 4 C - Dysplasia Tissue chr18 79461442 - GGGTCCCCAGAGCCTGGGAGGGTGGGGTCTGCTGGAGCCACTGA NFATC1 INTRON 135 4 C - Dysplasia Tissue chrX 124063231 CCT - STAG2 INTRON 58 3 D - Dysplasia Brush chr1 41512987 - GGCTCTGGCTTCGGTGCAGGTCGTGCTTCTGGTGAAGGTATCTCGAATATCAACCCTGATGATATCGAATCCATTAGCGTCCTGACGGGTCCT HIVEP3 p.2078_2079insGPVRTLMDSISSGLIFEIPSPEARPAPKPEP IN FRAME INDEL 283 8 D - Dysplasia Brush chr1 99709319 - A FRRS1 INTRON 113 17 D - Dysplasia Brush chr1 103003312 T - COL11A1 INTRON 31 5 D - Dysplasia Brush chr1 155763590 ATA - GON4L INTRON 724 15 D - Dysplasia Brush chr2 909682 CC GG LINC01939 FIVE PRIME FLANK 68 2 D - Dysplasia Brush chr3 57666046 G - DENND6A INTRON 107 7 D - Dysplasia Brush chr5 176958059 A - UIMC1 INTRON 274 40 D - Dysplasia Brush chr7 152014620 - T GALNTL5 INTRON 121 14 D - Dysplasia Brush chr8 112690005 CC AT CSMD3 p.G673I MISSENSE 270 33 D - Dysplasia Brush chr8 130187464 GG AA ASAP1 INTRON 12 2 D - Dysplasia Brush chr11 1231051 CA GG MUC5B INTRON 43 2 D - Dysplasia Brush chr12 3678760 G - CRACR2A INTRON 74 8 D - Dysplasia Brush chr18 50056669 TCACCTGTGCACATGCGGC - MYO5B INTRON 135 11 D - Dysplasia Brush chr19 43535208 GGCGCCCGACCCCACCCATGCCCAGACTGCCCCAAGGCCTTCTCCTACCCCTCCAAGCTGGCAGCCCACCGCCTCACGCACAGC - ZNF575 p.GARPHPCPDCPKAFSYPSKLAAHRLTHS186del IN FRAME INDEL 980 3 D - Dysplasia Brush chr19 58549322 ACCTTGCAGGAGGAGGAGACGGAGGCTGCCATTGGAGCCCCTCCTACTGCCACTGAGGGCCCTGAGACCAA - TRIM28 SPLICE SITE 996 24 D - Dysplasia Brush chr21 30601328 - T KRTAP22-1 THREE PRIME UTR 415 51 D - Dysplasia Brush chr22 39643030 CT TA CACNA1I INTRON 63 5 D - Dysplasia Brush chrX 119581358 TAG - UBE2A INTRON 133 4 E - OSCC Tissue chr1 52854337 AT - ZYG11A INTRON 69 4 E - OSCC Tissue chr2 11585062 AAAC - GREB1 INTRON 208 10 E - OSCC Tissue chr2 201271537 AGA - CASP8 p.E110del IN FRAME INDEL 291 22 E - OSCC Tissue chr4 153295950 AGAAAGCTGTGAAA - TRIM2 p.K476fs FRAME SHIFT INDEL 551 21 E - OSCC Tissue chr5 23526745 GTCTGCAGGGAGTGTGGGCGGGGCTTTAGCTGGAAGTCACACCTCCTCATTCACCAGAGGATACACACAGGGGAGAAGCCCTAT - PRDM9 p.VCRECGRGFSWKSHLLIHQRIHTGEKPY553del IN FRAME INDEL 646 6 E - OSCC Tissue chr5 55120065 GG AA CDC20B INTRON 49 2 E - OSCC Tissue chr5 176958059 A - UIMC1 INTRON 276 19 E - OSCC Tissue chr6 113860429 CGCCGCCG - MARCKS p.A285fs FRAME SHIFT INDEL 64 5 E - OSCC Tissue chr8 37965621 C - ADRB3 p.P284fs FRAME SHIFT INDEL 144 5 E - OSCC Tissue chr8 112690005 CC AT CSMD3 p.G673I MISSENSE 269 66 E - OSCC Tissue chr10 17705500 CC TT STAM INTRON 36 2 E - OSCC Tissue chr12 3678760 G - CRACR2A INTRON 65 10 E - OSCC Tissue chr12 4721057 TT GG GALNT8 INTRON 13 7 E - OSCC Tissue chr14 50902043 GC AT ABHD12B INTRON 180 3 E - OSCC Tissue chr15 90231339 GCTGCTCC - CIB1 INTRON 528 7 E - OSCC Tissue chr17 78698867 TCATGGCAATGA - CYTH1 p.155_159FIAMN>Y IN FRAME INDEL 62 3 E - OSCC Tissue chr18 50056669 TCACCTGTGCACATGCGGC - MYO5B INTRON 119 17 E - OSCC Tissue chr19 614058 - GGGAGGGGCGTGGCCGGGGCGGGTGCCCTGGCGT HCN2 INTRON 41 3 E - OSCC Tissue chr19 1754040 GCACGCGGCGGCCGCGGCCGTGGCCGGGGCGCACGGCGGCCATCCCCACGCGCACCC - ONECUT3 p.HAAAAAVAGAHGGHPHAHP127del IN FRAME INDEL 187 3 E - OSCC Tissue chr19 11505756 CC AT ZNF653 p.E11* NONSENSE 268 17 E - OSCC Tissue chr19 38570774 GGG AAA RYR1 INTRON 40 2 E - OSCC Tissue chr19 58549322 ACCTTGCAGGAGGAGGAGACGGAGGCTGCCATTGGAGCCCCTCCTACTGCCACTGAGGGCCCTGAGACCAA - TRIM28 SPLICE SITE 990 15 E - OSCC Tissue chr21 30601328 - T KRTAP22-1 THREE PRIME UTR 298 30 E - OSCC Tissue chr22 36288701 ATGGGGTAGCAGGAGGCCATGCACACCTGTCTGACCAGCTGCTT - MYH9 SPLICE SITE 446 9 E - OSCC Tissue chrX 51407879 CTGCCCGCCGAGGCCGCGATTCTGCGCCAGTCTCTGCCCCCCGAGGCCGCGATTCTGCGCCAGGCT - EZHIP p.ARRGRDSAPVSAPRGRDSAPGS289del IN FRAME INDEL 1074 6 F - OSCC Brush chr1 114576927 CACTCACT - BCAS2 INTRON 61 4 F - OSCC Brush chr2 11585062 AAAC - GREB1 INTRON 193 12 F - OSCC Brush chr2 201271537 AGA - CASP8 p.E110del IN FRAME INDEL 258 11 F - OSCC Brush chr3 14064829 - CAC TPRXL RNA 113 4 F - OSCC Brush chr3 14064834 - GTCCCAGCAGCG TPRXL RNA 118 4 F - OSCC Brush chr3 57666046 G - DENND6A INTRON 88 3 F - OSCC Brush chr4 153295950 AGAAAGCTGTGAAA - TRIM2 p.K476fs FRAME SHIFT INDEL 580 11 F - OSCC Brush chr5 73857587 AT - ARHGEF28 INTRON 91 8 F - OSCC Brush chr5 141193774 GC AA PCDHB10 p.A408K MISSENSE 404 5 F - OSCC Brush chr5 176958059 A - UIMC1 INTRON 307 17 F - OSCC Brush chr6 113860429 CGCCGCCG - MARCKS p.A285fs FRAME SHIFT INDEL 68 14 F - OSCC Brush chr7 82953679 GGGGGAGGAGGGGGTGGTGGTGGAGGAGGAGGAGGAGGGGGAGGGGGAGGA - PCLO p.PPPPPPPPPPPPPPPPP2409del IN FRAME INDEL 34 2 F - OSCC Brush chr8 52143155 GG AA ST18 INTRON 19 2 F - OSCC Brush chr8 112690005 CC AT CSMD3 p.G673I MISSENSE 237 40 F - OSCC Brush chr12 3678760 G - CRACR2A INTRON 66 3 F - OSCC Brush chr12 27312444 CC TT STK38L INTRON 9 2 F - OSCC Brush chr14 105248894 CGCCAGCGCCGCGGCCGCGGACCTAGCCAACAGCAACGCCGGCGCCGCCGTGGGCAGGAAGGCCGGGCCGCGCAGCCCGCCCAGCGCCCCCG - BTBD6 p.D15fs FRAME SHIFT INDEL 165 7 F - OSCC Brush chr19 11505756 CC AT ZNF653 p.E11* NONSENSE 295 13 F - OSCC Brush chr19 58549322 ACCTTGCAGGAGGAGGAGACGGAGGCTGCCATTGGAGCCCCTCCTACTGCCACTGAGGGCCCTGAGACCAA - TRIM28 SPLICE SITE 1069 16 F - OSCC Brush chr21 30601328 - T KRTAP22-1 THREE PRIME UTR 418 42 F - OSCC Brush chr22 36288701 ATGGGGTAGCAGGAGGCCATGCACACCTGTCTGACCAGCTGCTT - MYH9 SPLICE SITE 520 13 F - OSCC Brush chrX 77856771 ATTCC - MAGT1 p.M242fs FRAME SHIFT INDEL 173 5