Variant frequencies in short-read data from the 1KGP,,,,,,
Gene,Region,Position,Allele,Annotation,Raw read count,Estimated allele frequency
18s,es10s,1551,T,Reference,856,1
18s,es10s,1553,C,Reference,531,0.8564516129
18s,es10s,1553,CC,indel,89,0.1435483871
18s,es10s,1557,C,Reference,471,0.7836938436
18s,es10s,1557,CC,indel,130,0.2163061564
18s,es12s,1748,G,Reference,1789,0.9279045643
18s,es12s,1748,-,indel,139,0.07209543568
18s,es12s,1750,C,Reference,1561,0.7349340866
18s,es12s,1750,CC,indel,285,0.134180791
18s,es12s,1750,-,indel,278,0.1308851224
18s,es12s,1755,C,Reference,1825,0.9465767635
18s,es12s,1755,-,indel,103,0.05342323651
18s,es12s,1757,G,Reference,1694,0.7975517891
18s,es12s,1757,GG,indel,203,0.09557438795
18s,es12s,1757,-,indel,227,0.106873823
18s,es12s,1763,G,Reference,1794,0.961414791
18s,es12s,1763,GG,indel,72,0.038585209
18s,es12s,1765,C,Reference,1525,0.7909751037
18s,es12s,1765,-,indel,230,0.1192946058
18s,es12s,1765,CC,indel,173,0.08973029046
18s,es12s,1770,G,Reference,1864,1
18s,es12s,1772,C,Reference,1816,0.9419087137
18s,es12s,1772,-,indel,112,0.05809128631
18s,es12s,1776,G,Reference,1826,0.9470954357
18s,es12s,1776,-,indel,102,0.05290456432
18s,es12s,1779,G,Reference,1869,1
18s,es12s,1789,G,Reference,1858,0.9636929461
18s,es12s,1789,GG,indel,70,0.03630705394
18s,es13s,366,T,Reference,124,0.821192053
18s,es13s,366,-,indel,27,0.178807947
18s,es14s,1154,T,Reference,183,0.8133333333
18s,es14s,1154,-,indel,42,0.1866666667
18s,es14s,1157,G,Reference,336,0.9032258065
18s,es14s,1157,-,indel,36,0.09677419355
18s,es2s,125,C,Reference,933,1
18s,es2s,129,C,Reference,1010,1
18s,es2s,131,C,Reference,1146,0.932465419
18s,es2s,131,-,indel,83,0.06753458096
18s,es2s,132,T,Reference,1153,0.9328478964
18s,es2s,132,-,indel,83,0.06715210356
18s,es2s,133,C,Reference,1165,0.8707025411
18s,es2s,133,-,indel,173,0.1292974589
18s,es2s,143,T,Reference,996,0.9029918404
18s,es2s,143,-,indel,107,0.09700815956
18s,es2s,145,G,Reference,989,0.8966455122
18s,es2s,145,-,indel,114,0.1033544878
18s,es3s,178,C,Reference,11289,0.957262783
18s,es3s,178,-,indel,230,0.01950309506
18s,es3s,178,CC,indel,274,0.02323412194
18s,es3s,183,G,Reference,10587,0.9456055734
18s,es3s,183,-,indel,457,0.04081814934
18s,es3s,183,GG,indel,152,0.01357627724
18s,es3s,190,G,Reference,11319,1
18s,es3s,192,C,Reference,10057,0.8811881188
18s,es3s,192,CC,indel,710,0.0622097608
18s,es3s,192,-,indel,646,0.05660212039
18s,es3s,202,G,Reference,9337,0.8181021642
18s,es3s,202,GG,indel,585,0.05125733812
18s,es3s,202,-,indel,1491,0.1306404977
18s,es3s,218,T,Reference,11171,0.9787961097
18s,es3s,218,-,indel,242,0.0212038903
18s,es3s,229,A,Reference,10884,0.9536493472
18s,es3s,229,-,indel,168,0.01472005608
18s,es3s,229,AA,indel,361,0.03163059669
18s,es3s,235,A,Reference,11276,0.9879961447
18s,es3s,235,-,indel,137,0.01200385525
18s,es3s,237,C,Reference,11008,0.9645141505
18s,es3s,237,-,indel,405,0.03548584947
18s,es3s,240,G,Reference,11303,0.990361868
18s,es3s,240,-,indel,110,0.009638131955
18s,es3s,244,A,Reference,11282,1
18s,es3s,246,C,Reference,10456,0.916148252
18s,es3s,246,CC,indel,374,0.03276964865
18s,es3s,246,-,indel,583,0.05108209936
18s,es3s,253,C,Reference,11272,0.9876456672
18s,es3s,253,-,indel,141,0.01235433278
18s,es3s,255,G,Reference,11273,0.9877332866
18s,es3s,255,-,indel,140,0.0122667134
18s,es3s,257,C,Reference,10230,0.8963462718
18s,es3s,257,CC,indel,402,0.03522299133
18s,es3s,257,-,indel,781,0.06843073688
18s,es3s,261,G,Reference,11184,0.9799351617
18s,es3s,261,-,indel,229,0.02006483834
18s,es3s,263,C,Reference,11261,0.986681854
18s,es3s,263,-,indel,152,0.01331814597
18s,es3s,265,G,Reference,10246,0.8977481819
18s,es3s,265,GG,indel,542,0.04748970472
18s,es3s,265,-,indel,625,0.05476211338
18s,es3s,272,G,Reference,10908,0.9557522124
18s,es3s,272,GG,indel,274,0.02400771051
18s,es3s,272,-,indel,231,0.02024007711
18s,es3s,277,C,Reference,11182,0.9797599229
18s,es3s,277,-,indel,231,0.02024007711
18s,es3s,282,G,Reference,10783,0.9447997897
18s,es3s,282,-,indel,403,0.03531061071
18s,es3s,282,GG,indel,227,0.01988959958
18s,es3s,285,T,Reference,11121,0.9744151406
18s,es3s,285,-,indel,292,0.02558485937
18s,es3s,288,G,Reference,11164,0.978182774
18s,es3s,288,-,indel,249,0.02181722597
18s,es3s,307,G,Reference,10827,0.9486550425
18s,es3s,307,GG,indel,92,0.008060983089
18s,es3s,307,-,indel,494,0.04328397442
18s,es3s,310,C,Reference,11143,0.976342767
18s,es3s,310,-,indel,270,0.02365723298
18s,es3s,321,C,Reference,10212,0.8947691229
18s,es3s,321,CC,indel,549,0.04810304039
18s,es3s,321,-,indel,652,0.05712783668
18s,es3s,329,G,Reference,11095,0.9721370367
18s,es3s,329,-,indel,318,0.02786296329
18s,es3s,332,G,Reference,11137,0.9758170507
18s,es3s,332,-,indel,276,0.02418294927
18s,es6s,690,G,Reference,15536,0.9249821386
18s,es6s,690,-,indel,1260,0.0750178614
18s,es6s,696,G,Reference,15601,0.9288521076
18s,es6s,696,GG,indel,885,0.05269111693
18s,es6s,696,-,indel,310,0.01845677542
18s,es6s,700,G,Reference,16304,0.94862396
18s,es6s,700,GG,indel,333,0.01937510909
18s,es6s,700,-,indel,550,0.03200093094
18s,es6s,707,C,Reference,16471,0.9806501548
18s,es6s,707,CC,indel,325,0.0193498452
18s,es6s,710,C,Reference,16482,0.9813050726
18s,es6s,710,-,indel,314,0.01869492736
18s,es6s,722,C,Reference,16519,0.9835079781
18s,es6s,722,-,indel,277,0.01649202191
18s,es6s,725,C,Reference,16524,0.983805668
18s,es6s,725,-,indel,272,0.01619433198
18s,es6s,728,C,Reference,16221,0.9657656585
18s,es6s,728,-,indel,281,0.01673017385
18s,es6s,728,CC,indel,294,0.01750416766
18s,es6s,733,C,Reference,15549,0.9257561324
18s,es6s,733,CC,indel,637,0.03792569659
18s,es6s,733,-,indel,610,0.03631817099
18s,es6s,738,C,Reference,15459,0.9203977137
18s,es6s,738,CC,indel,555,0.03304358181
18s,es6s,738,-,indel,782,0.04655870445
18s,es6s,751,G,Reference,16525,0.983865206
18s,es6s,751,-,indel,271,0.016134794
18s,es6s,755,C,Reference,14524,0.8647296975
18s,es6s,755,CC,indel,1072,0.06382472017
18s,es6s,755,-,indel,1200,0.07144558228
18s,es6s,781,C,Reference,15929,0.9483805668
18s,es6s,781,CC,indel,464,0.02762562515
18s,es6s,781,-,indel,403,0.02399380805
18s,es6s,786,G,Reference,15625,0.9302810193
18s,es6s,786,GG,indel,429,0.02554179567
18s,es6s,786,-,indel,742,0.04417718504
18s,es6s,790,C,Reference,16149,0.9614789236
18s,es6s,790,CC,indel,229,0.01363419862
18s,es6s,790,-,indel,418,0.02488687783
18s,es6s,799,T,Reference,16153,0.9617170755
18s,es6s,799,TT,indel,243,0.01446773041
18s,es6s,799,-,indel,400,0.02381519409
18s,es6s,804,T,Reference,16600,0.9883305549
18s,es6s,804,-,indel,196,0.01166944511
18s,es6s,808,A,Reference,15070,0.8972374375
18s,es6s,808,AA,indel,791,0.04709454632
18s,es6s,808,-,indel,935,0.05566801619
18s,es6s,816,A,Reference,16577,1
18s,es6s,817,G,Reference,16577,1
18s,es6s,825,A,Reference,16597,0.9881519409
18s,es6s,825,-,indel,199,0.01184805906
18s,es6s,831,G,Reference,16410,0.9770183377
18s,es6s,831,GG,indel,386,0.0229816623
18s,es6s,833,C,Reference,16661,0.991962372
18s,es6s,833,-,indel,135,0.008037628007
18s,es6s,839,C,Reference,16561,0.9860085735
18s,es6s,839,-,indel,235,0.01399142653
18s,es6s,842,C,Reference,16575,0.9868421053
18s,es6s,842,-,indel,221,0.01315789474
18s,es6s,859,G,Reference,16564,0.9861871874
18s,es6s,859,-,indel,232,0.01381281257
18s,es6s,861,A,Reference,16571,0.9866039533
18s,es6s,861,-,indel,225,0.01339604668
18s,es6s,867,G,Reference,16641,0.9907716123
18s,es6s,867,-,indel,155,0.009228387711
18s,es6s,873,G,Reference,16592,0.987854251
18s,es6s,873,GG,indel,204,0.01214574899
18s,es6s,876,C,Reference,15947,0.9658994549
18s,es6s,876,CC,indel,563,0.03410054512
18s,es6s,880,G,Reference,16528,0.98404382
18s,es6s,880,-,indel,268,0.01595618004
18s,es6s,884,C,Reference,16515,1
18s,es6s,887,T,Reference,16380,0.9752321981
18s,es6s,887,-,indel,416,0.02476780186
18s,es6s,892,T,Reference,16410,1
18s,es6s,894,G,Reference,16951,1
18s,es6s,896,T,Reference,16346,0.9732079066
18s,es6s,896,TT,indel,178,0.01059776137
18s,es6s,896,-,indel,272,0.01619433198
18s,es6s,901,G,Reference,16542,0.9848773518
18s,es6s,901,-,indel,254,0.01512264825
18s,es6s,903,A,Reference,16495,0.9820790664
18s,es6s,903,-,indel,301,0.01792093356
18s,es6s,911,C,Reference,16473,0.9807692308
18s,es6s,911,-,indel,323,0.01923076923
18s,es7s,1107,G,Reference,546,1
18s,es7s,1116,C,Reference,360,0.8126410835
18s,es7s,1116,-,indel,83,0.1873589165
18s,es7s,1123,C,Reference,340,0.7674943567
18s,es7s,1123,CC,indel,103,0.2325056433
18s,es9s,1407,T,Reference,2774,1
18s,es9s,1410,C,Reference,2925,1
18s,es9s,1415,C,Reference,2184,0.672
18s,es9s,1415,CC,indel,447,0.1375384615
18s,es9s,1415,-,indel,619,0.1904615385
18s,es9s,1424,G,Reference,3055,0.94
18s,es9s,1424,GG,indel,195,0.06
18s,es9s,1428,G,Reference,2851,0.9390645586
18s,es9s,1428,GG,indel,185,0.06093544137
18s,es9s,1433,C,Reference,2680,0.7413554633
18s,es9s,1433,CC,indel,541,0.1496542185
18s,es9s,1433,-,indel,394,0.1089903181
18s,es9s,1440,C,Reference,3143,1
18s,es9s,1449,G,Reference,3284,0.9084370678
18s,es9s,1449,-,indel,331,0.09156293223
18s,post_es12s,1790,A,Reference,906,0.962805526
18s,post_es12s,1790,-,indel,35,0.03719447396
18s,post_es12s,1795,G,Reference,914,0.9713071201
18s,post_es12s,1795,-,indel,27,0.02869287991
18s,post_es12s,1803,T,Reference,923,1
18s,post_es12s,1822,A,Reference,1016,0.9278538813
18s,post_es12s,1822,AA,indel,36,0.03287671233
18s,post_es12s,1822,-,indel,43,0.03926940639
18s,post_es12s,1831,A,Reference,867,0.921360255
18s,post_es12s,1831,-,indel,31,0.03294367694
18s,post_es12s,1831,AA,indel,43,0.04569606801
18s,post_es12s,1838,T,Reference,895,0.9511158342
18s,post_es12s,1838,-,indel,46,0.04888416578
18s,post_es12s,1841,C,Reference,898,0.954303932
18s,post_es12s,1841,-,indel,43,0.04569606801
18s,post_es12s,1846,G,Reference,880,0.9351753454
18s,post_es12s,1846,GG,indel,61,0.06482465462
18s,post_es12s,1852,C,Reference,763,1
18s,post_es12s,1857,G,Reference,753,0.8002125399
18s,post_es12s,1857,-,indel,188,0.1997874601
18s,post_es12s,1861,G,Reference,820,1
18s,pre_es10s,1458,G,Reference,3669,1
18s,pre_es10s,1467,C,Reference,3747,0.9229064039
18s,pre_es10s,1467,-,indel,151,0.03719211823
18s,pre_es10s,1467,CC,indel,162,0.03990147783
18s,pre_es10s,1470,C,Reference,3618,0.8911330049
18s,pre_es10s,1470,-,indel,253,0.06231527094
18s,pre_es10s,1470,CC,indel,189,0.04655172414
18s,pre_es10s,1477,T,Reference,3914,1
18s,pre_es10s,1490,G,Reference,3926,1
18s,pre_es10s,1501,C,Reference,3732,0.9192118227
18s,pre_es10s,1501,-,indel,328,0.08078817734
18s,pre_es10s,1512,C,Reference,3710,1
18s,pre_es10s,1514,G,Reference,3212,0.7911330049
18s,pre_es10s,1514,GG,indel,247,0.06083743842
18s,pre_es10s,1514,-,indel,601,0.1480295567
18s,pre_es10s,1519,T,Reference,3769,1
18s,pre_es10s,1529,C,Reference,4225,1
18s,pre_es10s,1540,G,Reference,3533,0.8701970443
18s,pre_es10s,1540,-,indel,527,0.1298029557
18s,pre_es12s,1559,C,Reference,15507,0.9817042289
18s,pre_es12s,1559,T,SNV,289,0.01829577108
18s,pre_es12s,1562,C,Reference,15461,0.9787920993
18s,pre_es12s,1562,T,SNV,335,0.02120790073
18s,pre_es12s,1564,C,Reference,15359,0.9475599975
18s,pre_es12s,1564,-,indel,850,0.05244000247
18s,pre_es12s,1570,G,Reference,15553,1
18s,pre_es12s,1575,G,Reference,14344,0.9080779944
18s,pre_es12s,1575,GG,indel,1172,0.07419599899
18s,pre_es12s,1575,-,indel,280,0.01772600658
18s,pre_es12s,1579,A,Reference,15545,0.9841099012
18s,pre_es12s,1579,AA,indel,251,0.01589009876
18s,pre_es12s,1581,C,Reference,15016,0.9506204102
18s,pre_es12s,1581,-,indel,519,0.03285641935
18s,pre_es12s,1581,CC,indel,261,0.01652317042
18s,pre_es12s,1585,T,Reference,15402,0.9750569764
18s,pre_es12s,1585,TT,indel,394,0.02494302355
18s,pre_es12s,1588,A,Reference,15352,0.9855556269
18s,pre_es12s,1588,AA,indel,225,0.01444437311
18s,pre_es12s,1590,C,Reference,14450,0.9147885541
18s,pre_es12s,1590,CC,indel,576,0.03646492783
18s,pre_es12s,1590,-,indel,770,0.04874651811
18s,pre_es12s,1603,G,Reference,14744,0.933400861
18s,pre_es12s,1603,GG,indel,237,0.01500379843
18s,pre_es12s,1603,-,indel,815,0.05159534059
18s,pre_es12s,1610,G,Reference,15310,0.9692327171
18s,pre_es12s,1610,-,indel,486,0.03076728286
18s,pre_es12s,1619,A,Reference,15586,1
18s,pre_es12s,1626,C,Reference,13981,0.885097493
18s,pre_es12s,1626,CC,indel,512,0.03241326918
18s,pre_es12s,1626,-,indel,1303,0.08248923778
18s,pre_es12s,1638,G,Reference,15045,0.9524563181
18s,pre_es12s,1638,GG,indel,203,0.01285135477
18s,pre_es12s,1638,-,indel,548,0.03469232717
18s,pre_es12s,1644,C,Reference,14892,0.9427703216
18s,pre_es12s,1644,-,indel,904,0.0572296784
18s,pre_es12s,1656,G,Reference,14974,0.9479615092
18s,pre_es12s,1656,GG,indel,492,0.03114712585
18s,pre_es12s,1656,-,indel,330,0.0208913649
18s,pre_es12s,1663,A,Reference,15551,1
18s,pre_es12s,1682,C,Reference,14990,0.9489744239
18s,pre_es12s,1682,CC,indel,261,0.01652317042
18s,pre_es12s,1682,-,indel,545,0.03450240567
18s,pre_es12s,1687,C,Reference,15351,0.971828311
18s,pre_es12s,1687,-,indel,445,0.02817168904
18s,pre_es12s,1690,T,Reference,15647,1
18s,pre_es12s,1700,C,Reference,15454,0.9783489491
18s,pre_es12s,1700,CC,indel,342,0.0216510509
18s,pre_es12s,1703,C,Reference,14916,0.9442896936
18s,pre_es12s,1703,CC,indel,446,0.0282349962
18s,pre_es12s,1703,-,indel,434,0.02747531021
18s,pre_es12s,1713,C,Reference,15484,1
18s,pre_es12s,1716,C,Reference,15501,0.9813243859
18s,pre_es12s,1716,-,indel,295,0.01867561408
18s,pre_es12s,1722,G,Reference,15510,0.9818941504
18s,pre_es12s,1722,-,indel,286,0.01810584958
18s,pre_es12s,1726,G,Reference,15484,0.9802481641
18s,pre_es12s,1726,-,indel,312,0.01975183591
18s,pre_es12s,1728,T,Reference,15283,0.9675234237
18s,pre_es12s,1728,TT,indel,513,0.03247657635
18s,pre_es12s,1734,G,Reference,15437,1
18s,pre_es12s,1736,G,Reference,15427,0.9766396556
18s,pre_es12s,1736,GG,indel,369,0.02336034439
18s,pre_es12s,1738,C,Reference,14647,0.9272600658
18s,pre_es12s,1738,CC,indel,635,0.04020005065
18s,pre_es12s,1738,-,indel,514,0.03253988351
18s,pre_es12s,1743,G,Reference,14916,0.9442896936
18s,pre_es12s,1743,-,indel,880,0.05571030641
18s,pre_es13s,338,G,Reference,377,0.8490990991
18s,pre_es13s,338,GG,indel,67,0.1509009009
18s,pre_es13s,340,C,Reference,343,0.7725225225
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18s,pre_es14s,1143,-,indel,77,0.0816542948
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18s,pre_es2s,70,-,indel,357,0.06928003105
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18s,pre_es2s,72,-,indel,374,0.07257908015
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18s,pre_es2s,100,-,indel,344,0.0667572288
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18s,pre_es2s,109,-,indel,332,0.06442848826
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18s,pre_es2s,113,-,indel,144,0.02794488647
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18s,pre_es2s,119,TT,indel,347,0.06733941393
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18s,pre_es6s,386,-,indel,687,0.02802137292
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18s,pre_es6s,403,-,indel,386,0.01574417751
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18s,pre_es6s,410,-,indel,598,0.02439123873
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18s,pre_es6s,419,G,Reference,23763,0.9692458294
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18s,pre_es6s,419,-,indel,357,0.0145613248
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18s,pre_es6s,427,-,indel,230,0.009381245666
18s,pre_es6s,429,C,Reference,23659,0.9650038749
18s,pre_es6s,429,-,indel,858,0.03499612514
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18s,pre_es6s,431,-,indel,356,0.01452053677
18s,pre_es6s,436,G,Reference,23146,0.9440796182
18s,pre_es6s,436,GG,indel,702,0.02863319329
18s,pre_es6s,436,-,indel,669,0.02728718848
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18s,pre_es6s,441,-,indel,349,0.0142350206
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18s,pre_es6s,447,-,indel,393,0.01602969368
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18s,pre_es6s,462,C,Reference,24188,0.9865807399
18s,pre_es6s,462,-,indel,329,0.01341926011
18s,pre_es6s,470,G,Reference,24177,0.9861320716
18s,pre_es6s,470,-,indel,340,0.01386792838
18s,pre_es6s,477,G,Reference,24183,0.9863767998
18s,pre_es6s,477,GG,indel,334,0.01362320023
18s,pre_es6s,484,A,Reference,24171,0.9858873435
18s,pre_es6s,484,AA,indel,346,0.01411265652
18s,pre_es6s,490,C,Reference,23544,0.960313252
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18s,pre_es6s,490,-,indel,332,0.01354162418
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18s,pre_es6s,496,C,Reference,24186,0.9864991638
18s,pre_es6s,496,-,indel,331,0.01350083615
18s,pre_es6s,501,C,Reference,23880,0.9740180283
18s,pre_es6s,501,-,indel,321,0.01309295591
18s,pre_es6s,501,CC,indel,316,0.01288901578
18s,pre_es6s,504,G,Reference,22468,0.9164253375
18s,pre_es6s,504,-,indel,2049,0.08357466248
18s,pre_es6s,509,G,Reference,23914,0.9754048211
18s,pre_es6s,509,GG,indel,603,0.02459517886
18s,pre_es6s,518,G,Reference,24202,0.9871517722
18s,pre_es6s,518,GG,indel,315,0.01284822776
18s,pre_es6s,519,A,Reference,23071,0.9410205164
18s,pre_es6s,519,AA,indel,618,0.02520699923
18s,pre_es6s,519,-,indel,828,0.0337724844
18s,pre_es6s,534,G,Reference,23577,0.9616592568
18s,pre_es6s,534,GG,indel,630,0.02569645552
18s,pre_es6s,534,-,indel,310,0.01264428764
18s,pre_es6s,540,T,Reference,24203,0.9871925603
18s,pre_es6s,540,-,indel,314,0.01280743974
18s,pre_es6s,546,G,Reference,23854,0.9729575397
18s,pre_es6s,546,-,indel,331,0.01350083615
18s,pre_es6s,546,GG,indel,332,0.01354162418
18s,pre_es6s,548,C,Reference,23506,0.9587633071
18s,pre_es6s,548,-,indel,755,0.0307949586
18s,pre_es6s,548,CC,indel,256,0.01044173431
18s,pre_es6s,558,G,Reference,23922,0.9757311253
18s,pre_es6s,558,-,indel,285,0.01162458702
18s,pre_es6s,558,GG,indel,310,0.01264428764
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18s,pre_es6s,567,-,indel,315,0.01284822776
18s,pre_es6s,567,CC,indel,261,0.01064567443
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18s,pre_es6s,571,-,indel,323,0.01317453196
18s,pre_es6s,574,A,Reference,23918,0.9755679732
18s,pre_es6s,574,-,indel,274,0.01117591875
18s,pre_es6s,574,AA,indel,325,0.01325610801
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18s,pre_es6s,578,-,indel,288,0.0117469511
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18s,pre_es6s,580,-,indel,318,0.01297059183
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18s,pre_es6s,592,-,indel,308,0.01256271159
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18s,pre_es6s,597,-,indel,306,0.01248113554
18s,pre_es6s,597,GG,indel,313,0.01276665171
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18s,pre_es6s,600,-,indel,299,0.01219561937
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18s,pre_es6s,614,-,indel,321,0.01309295591
18s,pre_es6s,625,G,Reference,23903,0.9749561529
18s,pre_es6s,625,GG,indel,266,0.01084961455
18s,pre_es6s,625,-,indel,348,0.01419423257
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18s,pre_es6s,628,-,indel,356,0.01452053677
18s,pre_es6s,632,C,Reference,24145,0.9848268548
18s,pre_es6s,632,-,indel,372,0.01517314516
18s,pre_es6s,638,C,Reference,24169,0.9858057674
18s,pre_es6s,638,-,indel,348,0.01419423257
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18s,pre_es6s,651,-,indel,373,0.01521393319
18s,pre_es6s,653,A,Reference,23889,0.9743851205
18s,pre_es6s,653,-,indel,628,0.02561487947
18s,pre_es6s,666,T,Reference,24146,0.9848676429
18s,pre_es6s,666,-,indel,371,0.01513235714
18s,pre_es6s,668,A,Reference,23220,0.947097932
18s,pre_es6s,668,-,indel,903,0.03683158625
18s,pre_es6s,668,AA,indel,394,0.01607048171
18s,pre_es6s,683,G,Reference,24111,0.983440062
18s,pre_es6s,683,-,indel,406,0.016559938
18s,pre_es7s,919,A,Reference,14735,1
18s,pre_es7s,923,G,Reference,13287,0.8762199947
18s,pre_es7s,923,GG,indel,816,0.05381165919
18s,pre_es7s,923,-,indel,1061,0.06996834608
18s,pre_es7s,928,G,Reference,14548,0.959377473
18s,pre_es7s,928,GG,indel,616,0.04062252704
18s,pre_es7s,930,C,Reference,14491,0.9556185703
18s,pre_es7s,930,-,indel,673,0.0443814297
18s,pre_es7s,932,G,Reference,12632,0.8330255869
18s,pre_es7s,932,GG,indel,995,0.06561593247
18s,pre_es7s,932,-,indel,1537,0.1013584806
18s,pre_es7s,939,T,Reference,14960,0.9865470852
18s,pre_es7s,939,TT,indel,204,0.0134529148
18s,pre_es7s,950,C,Reference,14811,0.9767211817
18s,pre_es7s,950,-,indel,353,0.02327881825
18s,pre_es7s,958,G,Reference,14815,1
18s,pre_es7s,965,T,Reference,14821,1
18s,pre_es7s,970,G,Reference,14832,0.9781060406
18s,pre_es7s,970,-,indel,332,0.02189395938
18s,pre_es7s,973,C,Reference,14835,0.9783038776
18s,pre_es7s,973,-,indel,329,0.0216961224
18s,pre_es7s,985,G,Reference,14249,0.9396597204
18s,pre_es7s,985,GG,indel,329,0.0216961224
18s,pre_es7s,985,-,indel,586,0.03864415721
18s,pre_es7s,1002,T,Reference,14450,0.9529147982
18s,pre_es7s,1002,-,indel,465,0.03066473226
18s,pre_es7s,1002,TT,indel,249,0.01642046953
18s,pre_es7s,1006,C,Reference,14477,0.9710242136
18s,pre_es7s,1006,-,indel,432,0.02897578644
18s,pre_es7s,1008,A,Reference,14945,0.9855579003
18s,pre_es7s,1008,-,indel,219,0.01444209971
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18s,pre_es7s,1015,T,Reference,14711,0.9701266157
18s,pre_es7s,1015,TT,indel,229,0.01510155632
18s,pre_es7s,1015,-,indel,224,0.01477182801
18s,pre_es7s,1030,A,Reference,14926,1
18s,pre_es7s,1034,A,Reference,14889,0.9818649433
18s,pre_es7s,1034,-,indel,275,0.01813505671
18s,pre_es7s,1040,G,Reference,14422,0.9678545064
18s,pre_es7s,1040,GG,indel,479,0.03214549359
18s,pre_es7s,1061,T,Reference,15388,1
18s,pre_es7s,1072,T,Reference,14849,0.9792271169
18s,pre_es7s,1072,TT,indel,315,0.02077288314
18s,pre_es7s,1074,C,Reference,14864,0.9802163018
18s,pre_es7s,1074,-,indel,300,0.01978369823
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18s,pre_es7s,1082,A,Reference,14261,0.9404510683
18s,pre_es7s,1082,AA,indel,563,0.03712740702
18s,pre_es7s,1082,-,indel,340,0.02242152466
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18s,pre_es7s,1090,C,Reference,14482,0.9550250594
18s,pre_es7s,1090,-,indel,682,0.04497494065
18s,pre_es7s,1096,G,Reference,14539,0.958783962
18s,pre_es7s,1096,-,indel,625,0.04121603798
18s,pre_es7s,1104,G,Reference,14472,1
18s,pre_es9s,1160,T,Reference,22818,1
18s,pre_es9s,1162,C,Reference,22464,0.9700738438
18s,pre_es9s,1162,-,indel,693,0.02992615624
18s,pre_es9s,1164,G,Reference,19891,0.8436254135
18s,pre_es9s,1164,GG,indel,1618,0.0686232929
18s,pre_es9s,1164,-,indel,2069,0.08775129358
18s,pre_es9s,1175,G,Reference,22498,0.9715420823
18s,pre_es9s,1175,GG,indel,659,0.02845791769
18s,pre_es9s,1181,A,Reference,22824,0.985619899
18s,pre_es9s,1181,-,indel,333,0.01438010105
18s,pre_es9s,1188,A,Reference,22812,0.9851016971
18s,pre_es9s,1188,-,indel,345,0.01489830289
18s,pre_es9s,1194,A,Reference,22844,0.9864835687
18s,pre_es9s,1194,-,indel,313,0.01351643132
18s,pre_es9s,1197,G,Reference,22847,0.9866131191
18s,pre_es9s,1197,-,indel,310,0.01338688086
18s,pre_es9s,1206,G,Reference,22602,0.9760331649
18s,pre_es9s,1206,-,indel,555,0.02396683508
18s,pre_es9s,1210,G,Reference,22844,0.9864835687
18s,pre_es9s,1210,-,indel,313,0.01351643132
18s,pre_es9s,1215,C,Reference,22852,0.9868290366
18s,pre_es9s,1215,-,indel,305,0.01317096342
18s,pre_es9s,1218,C,Reference,22855,0.986958587
18s,pre_es9s,1218,-,indel,302,0.01304141296
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18s,pre_es9s,1230,C,Reference,22863,0.9873040549
18s,pre_es9s,1230,-,indel,294,0.01269594507
18s,pre_es9s,1235,G,Reference,22845,0.9865267522
18s,pre_es9s,1235,-,indel,312,0.01347324783
18s,pre_es9s,1242,T,Reference,22540,0.9733557887
18s,pre_es9s,1242,-,indel,306,0.01321414691
18s,pre_es9s,1242,TT,indel,311,0.01343006434
18s,pre_es9s,1255,G,Reference,21208,0.9158353845
18s,pre_es9s,1255,-,indel,1949,0.08416461545
18s,pre_es9s,1258,A,Reference,22242,0.9604871097
18s,pre_es9s,1258,AA,indel,484,0.02090080753
18s,pre_es9s,1258,-,indel,431,0.01861208274
18s,pre_es9s,1266,C,Reference,20692,0.8935527054
18s,pre_es9s,1266,-,indel,2465,0.1064472946
18s,pre_es9s,1271,C,Reference,21449,0.9262426048
18s,pre_es9s,1271,-,indel,1274,0.05501576197
18s,pre_es9s,1271,CC,indel,434,0.0187416332
18s,pre_es9s,1280,G,Reference,21892,0.9787195994
18s,pre_es9s,1280,GG,indel,476,0.02128040057
18s,pre_es9s,1306,T,Reference,22827,0.9857494494
18s,pre_es9s,1306,-,indel,330,0.01425055059
18s,pre_es9s,1316,C,Reference,21911,0.9461933757
18s,pre_es9s,1316,-,indel,1246,0.05380662435
18s,pre_es9s,1320,G,Reference,21897,0.9455888068
18s,pre_es9s,1320,GG,indel,447,0.01930301853
18s,pre_es9s,1320,-,indel,813,0.03510817463
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18s,pre_es9s,1327,G,Reference,22819,0.9854039815
18s,pre_es9s,1327,-,indel,338,0.01459601848
18s,pre_es9s,1334,G,Reference,22712,0.9807833484
18s,pre_es9s,1334,-,indel,445,0.01921665155
18s,pre_es9s,1336,C,Reference,22785,1
18s,pre_es9s,1342,T,Reference,22694,1
18s,pre_es9s,1346,T,Reference,22693,1
18s,pre_es9s,1348,G,Reference,22686,1
18s,pre_es9s,1351,G,Reference,22718,1
18s,pre_es9s,1367,T,Reference,22268,0.9795020674
18s,pre_es9s,1367,TT,indel,466,0.02049793261
18s,pre_es9s,1369,A,Reference,22300,1
18s,pre_es9s,1373,C,Reference,22314,0.9635963208
18s,pre_es9s,1373,-,indel,843,0.03640367923
18s,pre_es9s,1382,A,Reference,22714,1
18s,pre_es9s,1393,G,Reference,21882,0.9636675915
18s,pre_es9s,1393,-,indel,825,0.03633240851
28s,es10l,1702,C,Reference,1306,0.7876960193
28s,es10l,1702,-,indel,352,0.2123039807
28s,es10l,1711,C,Reference,1035,0.6242460796
28s,es10l,1711,CC,indel,275,0.1658624849
28s,es10l,1711,-,indel,348,0.2098914355
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28s,es10l,1725,-,indel,180,0.1085645356
28s,es12l,1807,C,Reference,2401,0.7810670137
28s,es12l,1807,-,indel,383,0.1245933637
28s,es12l,1807,CC,indel,290,0.09433962264
28s,es12l,1810,G,Reference,2665,0.8669486012
28s,es12l,1810,-,indel,409,0.1330513988
28s,es12l,1826,G,Reference,2804,0.9121665582
28s,es12l,1826,GG,indel,270,0.08783344177
28s,es12l,1827,C,Reference,2697,0.8773584906
28s,es12l,1827,-,indel,377,0.1226415094
28s,es12l,1829,G,Reference,2463,0.8012361744
28s,es12l,1829,GG,indel,369,0.1200390371
28s,es12l,1829,-,indel,242,0.07872478855
28s,es12l,1835,G,Reference,3541,0.9320873914
28s,es12l,1835,-,indel,258,0.06791260858
28s,es13l,1935,C,Reference,610,0.7942708333
28s,es13l,1935,-,indel,69,0.08984375
28s,es13l,1935,CC,indel,89,0.1158854167
28s,es13l,1941,A,Reference,418,0.8228346457
28s,es13l,1941,-,indel,90,0.1771653543
28s,es15l,2102,G,Reference,4087,0.9682539683
28s,es15l,2102,GG,indel,134,0.03174603175
28s,es15l,2111,G,Reference,3931,0.9312959014
28s,es15l,2111,GG,indel,254,0.06017531391
28s,es15l,2111,-,indel,36,0.008528784648
28s,es15l,2118,G,Reference,3966,0.9395877754
28s,es15l,2118,GCG,indel,255,0.06041222459
28s,es15l,2120,G,Reference,4174,0.9888651978
28s,es15l,2120,GG,indel,47,0.01113480218
28s,es15l,2151,G,Reference,4168,0.9874437337
28s,es15l,2151,GG,indel,53,0.01255626629
28s,es15l,2152,G,Reference,3907,0.925610045
28s,es15l,2152,-,indel,314,0.07438995499
28s,es15l,2153,G,Reference,3907,0.925610045
28s,es15l,2153,-,indel,314,0.07438995499
28s,es15l,2154,C,Reference,3907,0.925610045
28s,es15l,2154,-,indel,314,0.07438995499
28s,es15l,2155,G,Reference,3958,0.9376924899
28s,es15l,2155,-,indel,263,0.06230751007
28s,es15l,2156,G,Reference,3958,0.9376924899
28s,es15l,2156,-,indel,263,0.06230751007
28s,es15l,2157,C,Reference,3958,0.9376924899
28s,es15l,2157,-,indel,263,0.06230751007
28s,es15l,2168,G,Reference,4170,0.9879175551
28s,es15l,2168,-,indel,51,0.01208244492
28s,es15l,2169,C,Reference,3525,0.8351101635
28s,es15l,2169,-,indel,696,0.1648898365
28s,es15l,2170,G,Reference,3525,0.8351101635
28s,es15l,2170,-,indel,696,0.1648898365
28s,es15l,2171,G,Reference,3525,0.8351101635
28s,es15l,2171,-,indel,696,0.1648898365
28s,es15l,2172,C,Reference,3287,0.7787254205
28s,es15l,2172,-,indel,934,0.2212745795
28s,es15l,2173,G,Reference,4008,0.9495380242
28s,es15l,2173,GG,indel,47,0.01113480218
28s,es15l,2173,-,indel,166,0.03932717366
28s,es15l,2176,G,Reference,3223,0.7635631367
28s,es15l,2176,T,SNV,998,0.2364368633
28s,es15l,2177,G,Reference,3074,0.7282634447
28s,es15l,2177,GTG,indel,1101,0.2608386638
28s,es15l,2177,TG,indel,46,0.01089789149
28s,es15l,2181,G,Reference,4103,0.9720445392
28s,es15l,2181,-,indel,118,0.02795546079
28s,es15l,2182,G,Reference,4167,0.987206823
28s,es15l,2182,TG,indel,54,0.01279317697
28s,es15l,2186,C,Reference,4153,0.9838900734
28s,es15l,2186,CC,indel,68,0.01610992656
28s,es15l,2188,T,Reference,2003,0.4745321014
28s,es15l,2188,TT,indel,2218,0.5254678986
28s,es15l,2189,C,Reference,4061,0.9620942905
28s,es15l,2189,T,SNV,113,0.02677090737
28s,es15l,2189,TCC,indel,47,0.01113480218
28s,es15l,2193,C,Reference,4101,0.9715707178
28s,es15l,2193,-,indel,65,0.0153991945
28s,es15l,2193,G,SNV,55,0.01303008766
28s,es15l,2194,G,Reference,4052,0.9599620943
28s,es15l,2194,C,SNV,55,0.01303008766
28s,es15l,2194,-,indel,65,0.0153991945
28s,es15l,2194,CGC,indel,49,0.01160862355
28s,es15l,2195,C,Reference,1175,0.2783700545
28s,es15l,2195,CC,indel,1024,0.2425965411
28s,es15l,2195,-,indel,1103,0.2613124852
28s,es15l,2195,CCC,indel,528,0.1250888415
28s,es15l,2195,CCCC,indel,218,0.05164652926
28s,es15l,2195,CCCCC,indel,108,0.02558635394
28s,es15l,2195,G,SNV,65,0.0153991945
28s,es15l,2196,C,Reference,3947,0.9350864724
28s,es15l,2196,-,indel,274,0.0649135276
28s,es15l,2215,C,Reference,4094,0.969912343
28s,es15l,2215,CC,indel,53,0.01255626629
28s,es15l,2215,-,indel,74,0.01753139067
28s,es15l,2223,C,Reference,4169,0.9876806444
28s,es15l,2223,-,indel,52,0.0123193556
28s,es15l,2227,C,Reference,4091,0.969201611
28s,es15l,2227,CC,indel,71,0.01682065861
28s,es15l,2227,-,indel,59,0.0139777304
28s,es15l,2233,C,Reference,4109,0.9734660033
28s,es15l,2233,CC,indel,58,0.01374081971
28s,es15l,2233,-,indel,54,0.01279317697
28s,es15l,2240,C,Reference,4200,0.9950248756
28s,es15l,2240,CC,indel,21,0.004975124378
28s,es15l,2245,C,Reference,3917,0.9279791519
28s,es15l,2245,CC,indel,145,0.03435204928
28s,es15l,2245,-,indel,159,0.03766879886
28s,es19l,2468,C,Reference,1488,0.9253731343
28s,es19l,2468,-,indel,120,0.07462686567
28s,es19l,2473,G,Reference,1327,0.8252487562
28s,es19l,2473,GG,indel,105,0.06529850746
28s,es19l,2473,-,indel,176,0.1094527363
28s,es19l,2478,G,Reference,1406,0.8743781095
28s,es19l,2478,GG,indel,202,0.1256218905
28s,es19l,2485,G,Reference,1488,0.9253731343
28s,es19l,2485,-,indel,120,0.07462686567
28s,es19l,2487,C,Reference,1491,0.927238806
28s,es19l,2487,CC,indel,117,0.07276119403
28s,es19l,2493,T,Reference,1429,0.888681592
28s,es19l,2493,TT,indel,179,0.111318408
28s,es19l,2496,C,Reference,1636,0.8800430339
28s,es19l,2496,CC,indel,117,0.06293706294
28s,es19l,2496,-,indel,106,0.05701990317
28s,es19l,2501,G,Reference,1509,0.9384328358
28s,es19l,2501,-,indel,99,0.06156716418
28s,es19l,2503,C,Reference,1450,0.9017412935
28s,es19l,2503,-,indel,158,0.09825870647
28s,es20l,2545,G,Reference,1157,0.8805175038
28s,es20l,2545,-,indel,157,0.1194824962
28s,es20l,2548,G,Reference,1424,0.9075844487
28s,es20l,2548,-,indel,145,0.09241555131
28s,es20l,2554,G,Reference,1185,0.901826484
28s,es20l,2554,-,indel,129,0.09817351598
28s,es20l,2570,C,Reference,1219,0.9277016743
28s,es20l,2570,-,indel,95,0.07229832572
28s,es20l,2577,G,Reference,1201,0.9140030441
28s,es20l,2577,GG,indel,113,0.08599695586
28s,es20l,2592,C,Reference,1205,0.9170471842
28s,es20l,2592,-,indel,109,0.08295281583
28s,es20l,2594,C,Reference,1232,0.9375951294
28s,es20l,2594,T,SNV,82,0.06240487062
28s,es20l,2595,G,Reference,1085,0.8257229833
28s,es20l,2595,GG,indel,128,0.09741248097
28s,es20l,2595,-,indel,101,0.07686453577
28s,es26l,2749,G,Reference,653,0.7207505519
28s,es26l,2749,GG,indel,153,0.1688741722
28s,es26l,2749,-,indel,100,0.1103752759
28s,es26l,2757,G,Reference,468,0.6772793054
28s,es26l,2757,GG,indel,119,0.1722141823
28s,es26l,2757,-,indel,104,0.1505065123
28s,es27l,2965,C,Reference,4168,0.8616911309
28s,es27l,2965,CC,indel,669,0.1383088691
28s,es27l,3040,A,Reference,2641,0.5459995865
28s,es27l,3040,G,SNV,2196,0.4540004135
28s,es27l,3050,C,Reference,3482,0.7198676866
28s,es27l,3050,CTC,indel,1244,0.2571842051
28s,es27l,3050,-,indel,111,0.02294810833
28s,es27l,3051,T,Reference,4726,0.9770518917
28s,es27l,3051,-,indel,111,0.02294810833
28s,es27l,3094,G,Reference,4722,0.9762249328
28s,es27l,3094,-,indel,115,0.02377506719
28s,es27l,3109,G,Reference,4592,0.9493487699
28s,es27l,3109,GG,indel,129,0.0266694232
28s,es27l,3109,-,indel,116,0.02398180691
28s,es27l,3121,G,Reference,4713,0.9743642754
28s,es27l,3121,GG,indel,124,0.02563572462
28s,es27l,3126,G,Reference,4191,0.8664461443
28s,es27l,3126,GAG,indel,646,0.1335538557
28s,es27l,3159,CC,indel,3926,0.8116601199
28s,es27l,3159,C,Reference,911,0.1883398801
28s,es27l,3163,C,Reference,4613,0.9536903039
28s,es27l,3163,T,SNV,224,0.04630969609
28s,es27l,3217,G,Reference,4492,0.9286747984
28s,es27l,3217,GG,indel,226,0.04672317552
28s,es27l,3217,-,indel,119,0.02460202605
28s,es27l,3329,G,Reference,4193,0.8668596237
28s,es27l,3329,-,indel,371,0.07670043415
28s,es27l,3329,C,SNV,273,0.05643994211
28s,es27l,3330,C,Reference,3314,0.6851354145
28s,es27l,3330,CC,indel,1269,0.262352698
28s,es27l,3330,CCC,indel,138,0.02853008063
28s,es27l,3330,-,indel,116,0.02398180691
28s,es27l,3336,C,Reference,4711,0.9739507959
28s,es27l,3336,-,indel,126,0.02604920405
28s,es27l,3337,C,Reference,4570,0.9448004962
28s,es27l,3337,-,indel,267,0.05519950382
28s,es27l,3338,A,Reference,4223,0.8730618152
28s,es27l,3338,-,indel,476,0.0984081042
28s,es27l,3338,C,SNV,138,0.02853008063
28s,es27l,3349,A,Reference,4454,0.9208186893
28s,es27l,3349,G,SNV,383,0.07918131073
28s,es27l,3392,-,indel,3495,0.7225553029
28s,es27l,3392,G,Reference,1342,0.2774446971
28s,es27l,3393,-,indel,3495,0.7225553029
28s,es27l,3393,G,Reference,1342,0.2774446971
28s,es27l,3394,-,indel,3495,0.7225553029
28s,es27l,3394,C,Reference,1342,0.2774446971
28s,es27l,3474,C,Reference,4713,0.9743642754
28s,es27l,3474,-,indel,124,0.02563572462
28s,es27l,3491,G,Reference,3495,0.7225553029
28s,es27l,3491,A,SNV,1342,0.2774446971
28s,es27l,3493,G,Reference,4057,0.8387430225
28s,es27l,3493,-,indel,780,0.1612569775
28s,es27l,3494,C,Reference,4057,0.8387430225
28s,es27l,3494,-,indel,780,0.1612569775
28s,es27l,3495,G,Reference,4057,0.8387430225
28s,es27l,3495,-,indel,780,0.1612569775
28s,es27l,3496,G,Reference,4570,0.9448004962
28s,es27l,3496,-,indel,267,0.05519950382
28s,es27l,3497,C,Reference,4570,0.9448004962
28s,es27l,3497,-,indel,267,0.05519950382
28s,es27l,3498,G,Reference,4570,0.9448004962
28s,es27l,3498,-,indel,267,0.05519950382
28s,es27l,3513,G,Reference,2570,0.5313210668
28s,es27l,3513,A,SNV,2267,0.4686789332
28s,es27l,3514,G,Reference,2534,0.523878437
28s,es27l,3514,GCAG,indel,2162,0.4469712632
28s,es27l,3514,GCGGCAG,indel,141,0.02915029977
28s,es27l,3556,C,Reference,4704,0.9725036179
28s,es27l,3556,-,indel,133,0.02749638205
28s,es30l,3982,C,Reference,1922,0.8444639719
28s,es30l,3982,CC,indel,45,0.019771529
28s,es30l,3982,-,indel,309,0.1357644991
28s,es30l,3987,G,Reference,2209,0.9705623902
28s,es30l,3987,-,indel,67,0.02943760984
28s,es30l,3991,C,Reference,1743,0.7658172232
28s,es30l,3991,CC,indel,324,0.1423550088
28s,es30l,3991,-,indel,209,0.09182776801
28s,es30l,4003,C,Reference,1792,0.7873462214
28s,es30l,4003,CC,indel,333,0.1463093146
28s,es30l,4003,-,indel,151,0.06634446397
28s,es30l,4011,G,Reference,1917,0.8422671353
28s,es30l,4011,GG,indel,126,0.0553602812
28s,es30l,4011,-,indel,233,0.1023725835
28s,es30l,4015,C,Reference,2113,0.9283831283
28s,es30l,4015,-,indel,163,0.0716168717
28s,es30l,4018,G,Reference,2127,0.9345342707
28s,es30l,4018,GG,indel,42,0.01845342707
28s,es30l,4018,-,indel,107,0.04701230228
28s,es30l,4023,G,Reference,2071,0.849466776
28s,es30l,4023,GG,indel,201,0.08244462674
28s,es30l,4023,-,indel,166,0.06808859721
28s,es30l,4028,C,Reference,2158,0.9481546573
28s,es30l,4028,CC,indel,70,0.03075571178
28s,es30l,4028,-,indel,48,0.02108963093
28s,es30l,4029,C,Reference,2228,0.9789103691
28s,es30l,4029,-,indel,48,0.02108963093
28s,es30l,4030,G,Reference,2228,0.9789103691
28s,es30l,4030,-,indel,48,0.02108963093
28s,es30l,4031,C,Reference,2228,0.9789103691
28s,es30l,4031,-,indel,48,0.02108963093
28s,es30l,4032,C,Reference,2228,0.9789103691
28s,es30l,4032,-,indel,48,0.02108963093
28s,es30l,4033,G,Reference,2080,0.913884007
28s,es30l,4033,-,indel,121,0.05316344464
28s,es30l,4033,GG,indel,75,0.03295254833
28s,es30l,4034,G,Reference,2228,0.9789103691
28s,es30l,4034,-,indel,48,0.02108963093
28s,es30l,4035,C,Reference,2161,0.9494727592
28s,es30l,4035,-,indel,115,0.05052724077
28s,es30l,4036,C,Reference,2228,0.9789103691
28s,es30l,4036,-,indel,48,0.02108963093
28s,es30l,4037,C,Reference,2228,0.9789103691
28s,es30l,4037,-,indel,48,0.02108963093
28s,es30l,4038,T,Reference,2228,0.9789103691
28s,es30l,4038,-,indel,48,0.02108963093
28s,es30l,4039,G,Reference,2228,0.9789103691
28s,es30l,4039,-,indel,48,0.02108963093
28s,es30l,4040,C,Reference,2228,0.9789103691
28s,es30l,4040,-,indel,48,0.02108963093
28s,es30l,4041,G,Reference,2050,0.9007029877
28s,es30l,4041,GG,indel,119,0.05228471002
28s,es30l,4041,-,indel,107,0.04701230228
28s,es30l,4042,G,Reference,2228,0.9789103691
28s,es30l,4042,-,indel,48,0.02108963093
28s,es30l,4043,G,Reference,2228,0.9789103691
28s,es30l,4043,-,indel,48,0.02108963093
28s,es31l,4088,G,Reference,2396,0.9791581528
28s,es31l,4088,-,indel,51,0.02084184716
28s,es31l,4093,G,Reference,2190,0.9729009329
28s,es31l,4093,GG,indel,61,0.02709906708
28s,es31l,4096,G,Reference,1894,0.8414038205
28s,es31l,4096,GG,indel,236,0.1048422923
28s,es31l,4096,-,indel,121,0.05375388716
28s,es31l,4107,C,Reference,1927,0.8560639716
28s,es31l,4107,-,indel,324,0.1439360284
28s,es31l,4113,G,Reference,1971,0.8756108396
28s,es31l,4113,-,indel,280,0.1243891604
28s,es31l,4132,C,Reference,2184,0.9702354509
28s,es31l,4132,-,indel,67,0.02976454909
28s,es31l,4139,C,Reference,1849,0.8214127055
28s,es31l,4139,-,indel,151,0.0670812972
28s,es31l,4139,CC,indel,251,0.1115059973
28s,es31l,4142,G,Reference,2179,0.9680142159
28s,es31l,4142,-,indel,72,0.0319857841
28s,es31l,4144,C,Reference,2160,0.9595735229
28s,es31l,4144,CC,indel,91,0.04042647712
28s,es31l,4151,C,Reference,2209,0.9813416259
28s,es31l,4151,-,indel,42,0.01865837406
28s,es31l,4157,G,Reference,1951,0.8667258996
28s,es31l,4157,-,indel,162,0.07196801422
28s,es31l,4157,GG,indel,138,0.06130608618
28s,es31l,4171,C,Reference,2058,0.9142603287
28s,es31l,4171,-,indel,193,0.08573967126
28s,es31l,4173,G,Reference,1878,0.8342958685
28s,es31l,4173,GG,indel,181,0.08040870724
28s,es31l,4173,-,indel,192,0.08529542426
28s,es39l,4767,G,Reference,6647,0.9851785979
28s,es39l,4767,-,indel,100,0.0148214021
28s,es39l,4773,C,Reference,6632,0.9829553876
28s,es39l,4773,-,indel,115,0.01704461242
28s,es39l,4778,C,Reference,5945,0.8811323551
28s,es39l,4778,CC,indel,585,0.08670520231
28s,es39l,4778,-,indel,217,0.03216244257
28s,es39l,4789,C,Reference,6088,0.9023269601
28s,es39l,4789,CC,indel,571,0.08463020602
28s,es39l,4789,-,indel,88,0.01304283385
28s,es39l,4799,G,Reference,6474,0.9595375723
28s,es39l,4799,GG,indel,135,0.02000889284
28s,es39l,4799,-,indel,138,0.0204535349
28s,es39l,4805,-,indel,2299,0.3347895733
28s,es39l,4805,C,Reference,1607,0.2340177661
28s,es39l,4805,CC,indel,1475,0.2147953983
28s,es39l,4805,CCC,indel,1102,0.1604776467
28s,es39l,4805,CCCC,indel,384,0.05591961555
28s,es39l,4806,C,Reference,6535,0.9685786275
28s,es39l,4806,-,indel,212,0.03142137246
28s,es39l,4817,A,Reference,5241,0.7767896843
28s,es39l,4817,G,SNV,1506,0.2232103157
28s,es39l,4822,C,Reference,6194,0.9180376464
28s,es39l,4822,CC,indel,553,0.08196235364
28s,es39l,4834,G,Reference,6423,0.9519786572
28s,es39l,4834,GG,indel,222,0.03290351267
28s,es39l,4834,-,indel,102,0.01511783015
28s,es39l,4838,G,Reference,6424,0.9521268712
28s,es39l,4838,GG,indel,216,0.03201422855
28s,es39l,4838,-,indel,107,0.01585890025
28s,es39l,4847,C,Reference,6628,0.9823625315
28s,es39l,4847,CC,indel,119,0.0176374685
28s,es39l,4861,G,Reference,6658,0.9868089521
28s,es39l,4861,GG,indel,89,0.01319104787
28s,es39l,4867,G,Reference,6353,0.9416036757
28s,es39l,4867,GG,indel,322,0.04772491478
28s,es39l,4867,-,indel,72,0.01067140952
28s,es39l,4873,C,Reference,6664,0.9876982363
28s,es39l,4873,T,SNV,83,0.01230176375
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28s,pre_es12l,1762,C,Reference,3690,0.9418070444
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28s,pre_es12l,1781,-,indel,198,0.05053598775
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28s,pre_es12l,1793,A,Reference,3636,0.9280245023
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28s,pre_es12l,1797,-,indel,200,0.05104645227
28s,pre_es12l,1801,A,Reference,3688,0.9412965799
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28s,pre_es13l,1870,C,Reference,3798,0.9450111968
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28s,pre_es13l,1877,G,Reference,3823,0.9512316497
28s,pre_es13l,1877,-,indel,196,0.04876835034
28s,pre_es13l,1885,G,Reference,3569,0.8880318487
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28s,pre_es13l,1885,GG,indel,237,0.05896989301
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28s,pre_es13l,1913,C,Reference,3428,0.8529484947
28s,pre_es13l,1913,-,indel,591,0.1470515053
28s,pre_es13l,1920,C,Reference,3652,0.9086837522
28s,pre_es13l,1920,-,indel,367,0.09131624782
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28s,pre_es15l,1968,-,indel,233,0.04801153925
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28s,pre_es15l,1988,-,indel,143,0.0294663095
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28s,pre_es15l,2029,-,indel,215,0.0443024933
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28s,pre_es15l,2035,-,indel,223,0.04595095817
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28s,pre_es15l,2040,A,Reference,4381,0.9027405728
28s,pre_es15l,2040,-,indel,472,0.09725942716
28s,pre_es15l,2055,G,Reference,4331,0.8924376674
28s,pre_es15l,2055,GG,indel,276,0.05687203791
28s,pre_es15l,2055,-,indel,246,0.05069029466
28s,pre_es15l,2063,G,Reference,4270,0.8798681228
28s,pre_es15l,2063,GG,indel,583,0.1201318772
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28s,pre_es15l,2066,-,indel,317,0.06532042036
28s,pre_es15l,2072,C,Reference,4579,0.8651048555
28s,pre_es15l,2072,-,indel,348,0.0657472133
28s,pre_es15l,2072,CC,indel,366,0.06914793123
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28s,pre_es19l,2301,CC,indel,301,0.04351597513
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28s,pre_es19l,2333,CC,indel,259,0.03957219251
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28s,pre_es19l,2336,-,indel,234,0.03575248281
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28s,pre_es19l,2373,-,indel,171,0.02612681436
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28s,pre_es19l,2383,-,indel,309,0.04721161192
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28s,pre_es19l,2389,-,indel,176,0.0268907563
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28s,pre_es19l,2391,-,indel,167,0.02551566081
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28s,pre_es19l,2404,GG,indel,172,0.02627960275
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28s,pre_es19l,2407,TT,indel,191,0.02918258212
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28s,pre_es19l,2423,GG,indel,189,0.02887700535
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28s,pre_es19l,2432,-,indel,197,0.03009931245
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28s,pre_es19l,2441,-,indel,203,0.03101604278
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28s,pre_es19l,2454,-,indel,239,0.03651642475
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28s,pre_es20l,2513,-,indel,56,0.1169102296
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28s,pre_es20l,2520,-,indel,48,0.1002087683
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28s,pre_es20l,2530,-,indel,59,0.1231732777
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28s,pre_es20l,2538,-,indel,59,0.1231732777
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28s,pre_es26l,2634,-,indel,218,0.02727727728
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28s,pre_es26l,2647,-,indel,217,0.02715215215
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28s,pre_es26l,2652,CC,indel,378,0.0472972973
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28s,pre_es26l,2661,-,indel,205,0.02565065065
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28s,pre_es26l,2668,-,indel,637,0.07400952713
28s,pre_es26l,2668,CC,indel,227,0.02637388172
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28s,pre_es26l,2692,G,Reference,7487,0.9368118118
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28s,pre_es26l,2692,-,indel,260,0.03253253253
28s,pre_es26l,2706,T,Reference,7692,0.9624624625
28s,pre_es26l,2706,TT,indel,300,0.03753753754
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28s,pre_es26l,2708,-,indel,324,0.04054054054
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28s,pre_es26l,2710,-,indel,331,0.04141641642
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28s,pre_es26l,2718,-,indel,359,0.04491991992
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28s,pre_es27l,2805,-,indel,79,0.03168872844
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28s,pre_es27l,2829,-,indel,98,0.03931006819
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28s,pre_es27l,2861,-,indel,168,0.06738868833
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28s,pre_es30l,3649,-,indel,482,0.03084010493
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28s,pre_es30l,3653,-,indel,830,0.05147286822
28s,pre_es30l,3653,AA,indel,484,0.03001550388
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28s,pre_es30l,3669,AA,indel,469,0.03000831787
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28s,pre_es30l,3706,-,indel,748,0.0478597479
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28s,pre_es30l,3749,GG,indel,833,0.05329835562
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28s,pre_es30l,3753,AA,indel,428,0.02738498944
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28s,pre_es30l,3760,-,indel,401,0.0256574317
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28s,pre_es39l,4677,-,indel,909,0.02558689411
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28s,pre_es39l,4685,-,indel,881,0.02479873895
28s,pre_es39l,4702,C,Reference,34648,0.9752857062
28s,pre_es39l,4702,CC,indel,878,0.02471429376
28s,pre_es39l,4717,C,Reference,33783,0.9509373417
28s,pre_es39l,4717,CC,indel,867,0.02440466137
28s,pre_es39l,4717,-,indel,876,0.02465799696
28s,pre_es39l,4721,C,Reference,34680,0.976186455
28s,pre_es39l,4721,-,indel,846,0.02381354501
28s,pre_es41l,4973,A,Reference,290,0.8238636364
28s,pre_es41l,4973,AA,indel,35,0.09943181818
28s,pre_es41l,4973,-,indel,27,0.07670454545
28s,pre_es41l,4976,C,Reference,262,0.9424460432
28s,pre_es41l,4976,-,indel,16,0.05755395683
28s,pre_es41l,4990,C,Reference,260,0.9352517986
28s,pre_es41l,4990,-,indel,18,0.06474820144
28s,pre_es41l,4999,G,Reference,250,0.8992805755
28s,pre_es41l,4999,-,indel,28,0.1007194245
28s,pre_es41l,5004,G,Reference,226,0.8129496403
28s,pre_es41l,5004,GG,indel,24,0.08633093525
28s,pre_es41l,5004,-,indel,28,0.1007194245
28s,pre_es41l,5008,T,Reference,250,0.8992805755
28s,pre_es41l,5008,-,indel,28,0.1007194245
28s,pre_es44l,194,C,Reference,245,0.8566433566
28s,pre_es44l,194,CC,indel,41,0.1433566434
28s,pre_es44l,201,C,Reference,254,0.8881118881
28s,pre_es44l,201,CC,indel,32,0.1118881119
28s,pre_es44l,213,G,Reference,443,0.940552017
28s,pre_es44l,213,-,indel,28,0.05944798301
28s,pre_es45l,229,G,Reference,542,0.8958677686
28s,pre_es45l,229,-,indel,63,0.1041322314
28s,pre_es45l,231,T,Reference,556,0.9190082645
28s,pre_es45l,231,TT,indel,49,0.08099173554
28s,pre_es45l,236,G,Reference,544,0.8991735537
28s,pre_es45l,236,GG,indel,61,0.1008264463
28s,pre_es45l,238,C,Reference,524,0.8661157025
28s,pre_es45l,238,-,indel,81,0.1338842975
28s,pre_es45l,240,G,Reference,461,0.7619834711
28s,pre_es45l,240,GG,indel,75,0.1239669421
28s,pre_es45l,240,-,indel,69,0.1140495868
28s,pre_es5l,26,C,Reference,1607,0.6180769231
28s,pre_es5l,26,CC,indel,518,0.1992307692
28s,pre_es5l,26,-,indel,475,0.1826923077
28s,pre_es5l,60,G,Reference,1571,0.5363605326
28s,pre_es5l,60,A,SNV,1358,0.4636394674
28s,pre_es5l,64,A,Reference,2763,0.943325367
28s,pre_es5l,64,AA,indel,166,0.05667463298
28s,pre_es5l,74,G,Reference,2540,0.9769230769
28s,pre_es5l,74,-,indel,60,0.02307692308
28s,pre_es5l,79,C,Reference,2437,0.9373076923
28s,pre_es5l,79,-,indel,113,0.04346153846
28s,pre_es5l,79,CC,indel,50,0.01923076923
28s,pre_es5l,94,A,Reference,2535,0.975
28s,pre_es5l,94,AA,indel,65,0.025
28s,pre_es5l,95,G,Reference,2486,0.9561538462
28s,pre_es5l,95,GG,indel,93,0.03576923077
28s,pre_es5l,95,TG,indel,21,0.008076923077
28s,pre_es5l,102,G,Reference,2479,0.9534615385
28s,pre_es5l,102,GG,indel,58,0.02230769231
28s,pre_es5l,102,-,indel,63,0.02423076923
28s,pre_es5l,106,A,Reference,2571,0.9888461538
28s,pre_es5l,106,G,SNV,29,0.01115384615
28s,pre_es5l,110,C,Reference,2461,0.9465384615
28s,pre_es5l,110,-,indel,139,0.05346153846
28s,pre_es7l,274,C,Reference,6683,0.9289685849
28s,pre_es7l,274,-,indel,511,0.07103141507
28s,pre_es7l,292,G,Reference,6820,0.9480122324
28s,pre_es7l,292,-,indel,374,0.05198776758
28s,pre_es7l,302,C,Reference,6945,0.9653878232
28s,pre_es7l,302,-,indel,249,0.03461217681
28s,pre_es7l,310,G,Reference,6753,0.9386989158
28s,pre_es7l,310,GG,indel,229,0.03183208229
28s,pre_es7l,310,-,indel,212,0.02946900195
28s,pre_es7l,314,G,Reference,6941,0.9648318043
28s,pre_es7l,314,GG,indel,253,0.03516819572
28s,pre_es7l,334,A,Reference,7010,0.9744231304
28s,pre_es7l,334,-,indel,184,0.02557686961
28s,pre_es7l,339,C,Reference,7538,0.9803615555
28s,pre_es7l,339,-,indel,151,0.01963844453
28s,pre_es7l,341,G,Reference,7037,0.978176258
28s,pre_es7l,341,-,indel,157,0.02182374201
28s,pre_es7l,348,G,Reference,7031,0.9773422296
28s,pre_es7l,348,GG,indel,163,0.02265777036
28s,pre_es7l,350,C,Reference,7024,0.9763691966
28s,pre_es7l,350,-,indel,170,0.02363080345
28s,pre_es7l,362,A,Reference,6991,0.9717820406
28s,pre_es7l,362,-,indel,203,0.02821795941
28s,pre_es7l,373,G,Reference,6583,0.9150681123
28s,pre_es7l,373,-,indel,204,0.02835696414
28s,pre_es7l,373,GG,indel,407,0.05657492355
28s,pre_es7l,380,T,Reference,6986,0.971087017
28s,pre_es7l,380,-,indel,208,0.02891298304
28s,pre_es7l,383,A,Reference,6564,0.9124270225
28s,pre_es7l,383,-,indel,630,0.08757297748
28s,pre_es7l,411,G,Reference,6862,0.9538504309
28s,pre_es7l,411,-,indel,332,0.04614956909
28s,pre_es7l,418,A,Reference,6777,0.9420350292
28s,pre_es7l,418,AA,indel,417,0.05796497081
28s,pre_es7l,430,G,Reference,6349,0.8825410064
28s,pre_es7l,430,GG,indel,845,0.1174589936
28s,pre_es7l,433,A,Reference,6770,0.9410619961
28s,pre_es7l,433,-,indel,424,0.05893800389
28s,pre_es7l,437,G,Reference,6246,0.8682235196
28s,pre_es7l,437,GG,indel,479,0.06658326383
28s,pre_es7l,437,-,indel,469,0.06519321657
28s,pre_es8l,1313,C,Reference,961,0.8342013889
28s,pre_es8l,1313,CC,indel,62,0.05381944444
28s,pre_es8l,1313,-,indel,129,0.1119791667
28s,pre_es8l,1318,C,Reference,1101,0.9557291667
28s,pre_es8l,1318,CC,indel,51,0.04427083333
28s,pre_es8l,1328,G,Reference,915,0.7942708333
28s,pre_es8l,1328,GG,indel,119,0.1032986111
28s,pre_es8l,1328,-,indel,118,0.1024305556
28s,pre_es8l,1331,C,Reference,1056,0.9166666667
28s,pre_es8l,1331,-,indel,96,0.08333333333
28s,pre_es8l,1338,G,Reference,1037,0.9001736111
28s,pre_es8l,1338,GG,indel,115,0.09982638889
28s,pre_es8l,1345,A,Reference,968,0.7688641779
28s,pre_es8l,1345,G,SNV,291,0.2311358221
28s,pre_es8l,1347,G,Reference,905,0.7855902778
28s,pre_es8l,1347,TG,indel,247,0.2144097222
28s,pre_es9l,1391,A,Reference,220,0.8239700375
28s,pre_es9l,1391,-,indel,47,0.1760299625