sample,generation,Timepoint,Ancestor_Strain,pop_name,chemostat,Description,CNV_Mechanism,CNV_breakpoint_up,CNV_breakpoint_down,junction_up,junction_down,cnv_start,cnv_end,cnv_length,distance_start,distance_end,gap1_copies,gap1_rounded,GFP_copies,gap1_reporter_copies,mean_rd,median_rd,sd_rd,min_rd,max_rd,ODIRAtype
2676,79,6,2071,gap1_all_1,A04,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,NA,NA,459816,520246,60430,58388,2042,1.773744832,2,1.616762237,1.638330171,42.3311041,39,70.37310034,0,3914,transposon-mediated
2678,79,6,2071,gap1_all_1,A04,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,514800,521500,6700,3404,3296,2.031671445,2,1.793131912,1.796679643,69.4039782,65,103.0365084,0,4895,transposon-mediated
2680,79,6,2071,gap1_all_1,A04,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,514841,520226,5385,3363,2022,2.610589583,3,2.638505736,2.377651584,49.53355185,43,81.14109687,0,5073,transposon-mediated
2681,79,6,2071,gap1_all_1,A04,LTR and ARS KO,NAHR,YKR011C,new LTR,NA,NA,462821,581500,118679,55383,63296,2.820192245,3,2.610092279,2.492941647,79.27922033,73,107.5290101,0,5295,NAHR
2682,79,6,2076,gap1_ltr_1,C04,LTR KO,ODIRA,DAL80,TRK2,gataaACAATATCCCGCTCAGTAATACAAAATTACTACTGTCTCAGAAAGAATATTCAAGAGAAAGAAGAGACTGCTTACAACTGGTGGTGGTTCATTACCTACGAATAATCCGAAGGTTTCTATTCTGGAACTGTCTCTTATACACATCTAAAGC;accataaacttTTCCAGAATAGAAACCTTCGGATTATTCGTAGGTAATGAACCACCACCAGTTGTAAGCAGTCTCTTCTTTCTCTTGAATATTCTTTCTGAGACAGTAGTAATTTTGTATTACTGAGCGGGATATTGTTTATCTGCCGTCATACTATATTAC,CACCGAGATCTACACTATCCTCTTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCTATCTATCGTGGCAGCCAACCTTTGGCAGAAACTCCGTCTTCATTGGACTCACAAAGCACGATATTCGACACCGCCGAGTTCCTCCTTTTGTTGctttgtgagtccaatgaag,507200,532000,24800,11004,13796,2.715329781,3,2.70605545,2.476426087,70.00158588,64,99.79149063,0,5171,ODIRA one end
2684,79,6,2076,gap1_ltr_1,C04,LTR KO,ODIRA,SPC34,TRM2,ACCCTGAGAAACAATCCGTTTCACGTAGAGACGGCAAGGAGGGAGTATTCGACTATGTTATTAAACGAGATACGGACATGAAAAGAAATAGAAGGCTGGGCAGACCAGGGTTGACTTTGAACAGAAGATACGCCTCGTCGTGGTTACAGTCctttattagtctagtaatgtcttttct,ATTATAAACTaaaaaggttgAATCAGCACCATGACTGGAAGTACTGAAATGGTACCACCAACAATGAAAacctgctccctggagaaattttgagattttaaCATACCGTTGACAACAAAAGGCTTTCGTCTCCTTTGACAGATTCTGGTAACCGCCGGACTAAGAAGCCAAAGTTGAGAAAGTACAAGGCCAA,511546,552629,41083,6658,34425,2.803058874,3,2.435067733,2.490330267,73.62780942,68,112.0846082,0,5596,ODIRA one end
2685,79,6,2076,gap1_ltr_1,C04,LTR KO,ODIRA,DID2,DYN1,TTAGTATACAATTTATGTACAGCATATGTGGTCATACATACATAACATAGCTGGAAACGTAATGATGAACTAATGAGCAAAGTTGCTGACGAGAATGGCATGGAATTGAAGCAAAGTGCAAAACtggacaatgttccggagataaaggcgaaagaggttaatgtCTGTCTCTTATACACATCTGACGCTGC,CCAGTGAAGGAACACATCGTGAGGATTTGTTTCCTTACGTAGTTGGGGAATTTTCCTGAAAAAGCAACAGCAAATCTTTTGACGACACCTATTTTAAAGCTTATAAGAAATAATGAGGATGATTATGAACCTGTCTCTTATACACATCTCAgagcccacgagacgctacgctatctcgtat,509018,549000,39982,9186,30796,2.477088156,2,2.377581993,2.289605803,47.57185979,42,80.17238275,0,4745,ODIRA
2687,79,6,2076,gap1_ltr_1,C04,LTR KO,ODIRA,CAF4,YSR3,gcttacgATTTACCAGTATCGTCCTTAGATTTAGATGGTAAATCGTAAGCAATCACGTCAAGAATTGAGCTTGTCCTCAAATCCCAAATCCTTACGCTATTGTCCATCGAGCCTGTTACCAATTTTTCGGAATCAAACTTCAAACTTGTAATTACATC,GAATAgaaccacatgatgcgtacctactacatacaaggttccatccgtatctttcggttaaccagtcgctgcaatccagcccactgactacgccAACAAGCCCCATGCTACACTCAAAAGGGGAAACCAGAGATGTTCACCAATCTGGAAATTTCGTAAAGCATGCACCACCCAGATTCTTATAAAAAAACAGATAGCTCCAACTGCGGCGCCGCTAAATAAATCCAGCATACCATGCATACCGCAGTAAACTCTACCAAAAACCAGGGTTAAGTAGTAAAATATCACCGCCAGTTGACAGAATCACACTAAGTG,508978,538243,29265,9226,20039,2.769170483,3,2.516026764,2.502498294,61.01193876,55,99.98028839,0,5383,ODIRA one end
2689,79,6,2076,gap1_ltr_1,C04,LTR KO,ODIRA,DAL80,TRK2,TCTGCCTGTCTCGTGGGCTCGGAGATGTGTATAAGAGACAATGTAATATGGTATGACGGCAGATAAAgcagccttgtcagctctatatttgacgtgtCAATATCCCGCTCAGTAATACAAAATTACTACTGTCTCAGAAAGAATATTCAAGAGAAAGAAGAGACTGCTTACAACTGGTGGTGGTTCATTACCTACGAATAATCCGAAGGTT;atataatgtaatatagtatgacggcagataaACAATATCCCGCTCAGTAATACAAAATTACTACTGTCTCAGAAAGAATATTCAAGAGAAAGAAGAGACTGCTTACAACTGGTGGTGGTTCATTACCTACGAATAATCCGAAGGTTTCTATTCTGGAAAAGTTTATGGTGAGCGGGTCCATT;TCTGCCTGTCTCGTGGGCTCGGAGATGTGTATAAGAGACAatgtaatatGGTATGACGGCAGATAAACAATATCCCGCTCAGTAATACAAAATTACTACTGTCTCAGAAAGAATATTCAAGAGAAAGAAGAGACTGCTTACAACTGGTGGTGGTTCATTAcctacgaataatccgaaggtt,TCtttggcaGGAGATGTGTATAAGAGACAGTCATTGGACTCACAAAGCAACAAAAGGAGGAACTCGGCGGTGTCGAATATCGTGCTTTGTGAGTCCAATGAAGACGGAGTTTCTGCCAAAGGTTGGCTGCCACGATAGATAGTTGGTGCTCATTGTTCtg,506888,531839,24951,11316,13635,2.724517421,3,2.483808123,2.449483002,59.24845154,54,79.9889176,0,4699,ODIRA one end
2690,79,6,2076,gap1_ltr_1,C04,LTR KO,complex CNV,LTR 460kb,NAP1,NA,GTGTATAAGAGACAGGTAACAACAGGGGTTGGTTAGCCAAGATGTCCTCCTCGTTGATGGTGCCGATCTTGTCATCCTGCTCCTGTTGTTTCAGTCCATCCAGGACAGACTTGGCTCGCTGGTGGGCCAGGACCTGTCTCTTATACAgaaactCATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCgaaTGCT;AGCAGAAGACGGCATACGAGATCTAGTACGGTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGTCCTGGCCCACCAGCGAGCCAAGTCTGTCCTGGATGGACTGAAACAACAGGAGCAGGATGACAAGATCGGCACCATCAACGAGGAGgacatcttggctaaccaacccctgttgttacctgtctcttatacac,458500,529500,71000,59704,11296,4.248421757,4,4.24810639,3.808511782,60.8511342,54,104.3124952,0,5412,complex CNV
2691,79,6,2150,gap1_ars_1,E04,ARS KO,LTR NAHR,LTR 460kb,LTR12,NA,NA,458264,520247,61983,59940,2043,2.823706744,3,2.462430399,2.591189553,56.93992398,51,92.15615127,0,5328,LTR NAHR
2692,79,6,2150,gap1_ars_1,E04,ARS KO,ODIRA,CAF4,DYN1,GCAAATGTATTCAGCAACTTGACCTTATCTTCACACCTACACATAGCGACATTAAAATGCCTGCACGTTCATTAAACATTGGTGCTTCTGTGCCAAGTAAACATGCACCATTGTTTAATGAACGTGCAGGCATTTTAATGTCGCTATGTGTaggtgtgaagataaggtcaagttgctgaataca;GCAAATGTATTCAGCAACTTGACCTTATCTTCACACCTACACATAGCGACATTAAAATGCCTGCACGTTCATTAAACATTGGTGCTTCTGTGCCAAGTAAACATGCACCATTGTTTAATGAACGTGCAGGCATTTTAAatTGTCGCTATGTGTAGGTGTGAAGATAAGGTacataaagacgaaatcacagccctgtcttttgattctgaagctttggttagCAAGTTGCTGAATACA,CCAAAATGATAATGGTTCATTGAACTGCATTTTGAAGACAACAGTTCTAAAAAATGAACAATTTTCGAAGCTAAAGACTTAGAATCTTCGAACCCCATAATTTGTAATATCATCTCCGCAAAGTGGTACTATTGCAGAGATGATATTACAAattatggctgtctcttatacacatctgacgctgccgacgaatagagaggtgtagatctcggtggtcgccgtgtca,509390,544477,35087,8814,26273,2.521431908,3,2.53299182,2.324115647,45.89971329,40,80.20566534,0,5112,ODIRA no ARS
2693,79,6,1657,gap1_1,H03,Wildtype architecture,ODIRA,KAE1,YKR051W,NA,NA,513014,537483,24469,5190,19279,2.772570257,3,2.612616144,2.53657496,52.12877097,47,84.3449099,0,4810,ODIRA
2694,79,6,1657,gap1_1,H03,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513053,520878,7225,4551,2674,2.776232993,3,2.618068555,2.663925611,82.53127063,78,102.8265537,0,4959,LTR NAHR
2695,79,6,1657,gap1_1,H03,Wildtype architecture,ODIRA,SPC34,YKR051W,NA,NA,511441,533892,22451,6763,15688,2.898528461,3,2.78374942,2.635127493,65.02222415,60,99.83562948,0,4888,ODIRA
2697,79,6,1657,gap1_1,H03,Wildtype architecture,ODIRA,CAF4,DYN1,NA,NA,509812,543760,33948,8392,25556,2.879475733,3,2.495683762,2.593253784,72.19102519,67,109.3414384,0,5358,ODIRA
2836,79,6,2076,gap1_ltr_3,C06,LTR KO,ODIRA,"CAF4, SCP34",YKR051W,GGAAGAAGAAAGATCATCTGAAGCGTCGTCCTTCACGCAAAATGAAGAAGCCATATCGTCGTTATGTGATGTTGAAAGTAAGGATACGAGATTAAAAGATTTTTACAAGATGCCCCATGAAAAAAGCCACGTCTTATTTTGTTAGGTGATGatctaatttttttgagctttgtttattgattattttcaaatgtctcttgcttattttcgc,NA,504098,652500,148402,14106,134296,2.6257231056272157,3,2.566738237,2.4991014331935815,129.10687105212756,119,156.70714725845755,0,6735,ODIRA
2837,79,6,2076,gap1_ltr_3,C06,LTR KO,ODIRA,SPC34,NA,CGGAGATGTGTATAAGAGACAGATGGGGGAAAGCTTGGATAGATGTATAGATGATATTAATAGGGCGGTGGACTCTATGTCCACACTCTATTAATATCATCTATACATCTATCCAAGCTTTCCCCCATTCTGTAATTGCCACGTCTTATTTtgttaggtgatgatctaatttttttgagctt,NA,511958,535586,23628,6246,17382,2.5489087249444573,3,2.4118928648540363,2.427939767213941,123.68162714753768,114,146.8465449361691,0,6269,ODIRA one end
2838,79,6,1657,gap1_2,G04,Wildtype architecture,ODIRA,NA,RHO4,NA,NA,511966,635322,123356,6238,117118,2.539553172021105,3,2.371697660074606,2.423599356691289,121.16972942021472,110,148.17928848033628,0,6805,ODIRA one end
2839,79,6,1657,gap1_2,G04,Wildtype architecture,ODIRA,in between DID2 and CAF4; GAP1,"DYN1, RHO4 unconfirmed",NA,NA,513658,552077,38419,4546,33873,2.5862160824484697,3,2.4850312466073996,2.486509423999053,93.83548023,84,125.41477426240296,0,6042,ODIRA
2841,79,6,1657,gap1_2,G04,Wildtype architecture,ODIRA,SPC34,ECM4,NA,NA,511000,586033,75033,7204,67829,2.464705881722348,2,2.4747941374604627,2.3730275920723503,79.12524359816466,71,104.85299061525654,0,5484,ODIRA
2843,79,6,1657,gap1_2,G04,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513053,521595,26388,6232,20156,2.604641290419946,3,2.557847521289795,2.469786733825116,126.93291221041432,116,146.6039034103294,0,6678,LTR NAHR
2844,79,6,2071,gap1_all_3,A06,LTR and ARS KO,complex CNV,PAP1,"DYN1, OAF3",NA,NA,443021,567514,124493,75183,49310,2.573275634345314,3,2.464293414185681,2.4480729502578233,83.73713046807563,76,118.4169612240772,0,6049,complex CNV
2846,79,6,2071,gap1_all_3,A06,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,512861,521279,8418,5343,3075,1.892091608517088,2,1.827693597150166,1.853629121750937,103.18237934007652,94,127.55650611212953,0,6438,transposon-mediated
2847,79,6,2071,gap1_all_3,A06,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,512457,521751,9294,5747,3547,1.8463106874750643,2,1.8988134651393629,1.8153304163655135,125.76377667654072,117,149.78959744046537,0,6749,transposon-mediated
2849,79,6,2076,gap1_ltr_2,D05,LTR KO,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.6913757469030852,2,1.7940852962368004,1.7155024339317675,125.9865870798791,115,144.98905924737494,0,6140,aneuploid
2850,79,6,2076,gap1_ltr_2,D05,LTR KO,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.7376100969468249,2,1.769478756583698,1.699700465,99.58176082372552,90,130.84834344351606,0,5772,aneuploid
2851,79,6,2076,gap1_ltr_2,D05,LTR KO,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.7540118960451518,2,1.8681997293624977,1.8092853316864983,87.51255654,80,114.04325587866497,0,5150,aneuploid
2852,79,6,2150,gap1_ars_5,E08,ARS KO,ODIRA,OSH6,CCP1,NA,NA,448362,631285,182923,69842,113081,1.9587401664127029,2,2.046954474528229,1.911243794265478,74.86987719199004,67,110.70395734973746,0,5719,ODIRA
2853,79,6,2150,gap1_ars_5,E08,ARS KO,ODIRA,OSH6,CCP1,NA,NA,445401,569905,124504,72803,51701,2.4663198938874324,2,2.5069450889427216,2.3611045377841906,130.17338069075188,120,174.78815270802906,0,7516,ODIRA
2854,79,6,2150,gap1_ars_5,E08,ARS KO,LTR NAHR,LTR 460kb,LTR12,NA,NA,458401,520845,73444,69803,3641,1.8676054538314768,2,1.9880240376290532,1.8654561715469271,128.97031926504835,119,166.21377706791935,0,7127,LTR NAHR
2855,79,6,2150,gap1_ars_5,E08,ARS KO,ODIRA,OSH6,GLG1,NA,NA,445398,569997,124599,72806,51793,2.3855549213231697,2,2.6810083716803232,2.436174136451532,86.21311210935967,79,117.18265192560769,0,5329,ODIRA
2924,125,9,2076,gap1_ltr_2,D05,LTR KO,NAHR,NA,BET3/SPT4,NA,gtacagtgtaagagatgtctagtgaaagagcctgtatgctgtatggcatagtgcagaccacaaatgagtttaatagagatggttgtcccaactgtcagggtatttttgaagaggcaggtgtttctacaatggaatGTACGTCGCCTTCTTTCGAGGGCCTCGTAGGAATGTGATGGTGATTGTGATGTCTGGTTTGTGTCGGATATCTTGAGAGGAGACTCTCAGACGGAGATCAAGGTTAAGTTAAATAGAATTTTAAAAGACGAAATACCGATCGGCGAAGATT,512392,577434,65042,5812,59230,2.212462496,2,2.222868883,2.243017732417217,108.22206413227148,99,146.2508539,0,6605,NAHR
2925,125,9,2076,gap1_ltr_2,D05,LTR KO,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.5701996272487129,2,1.7246169703871073,1.5945419952148256,77.93617026210435,69,111.2940146629836,0,5718,aneuploid
2926,125,9,2076,gap1_ltr_2,D05,LTR KO,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.544230702699285,2,1.6178057799319083,1.6261655391788878,74.53230916442583,66,106.22548476384704,0,5416,aneuploid
2927,125,9,1657,gap1_2,G04,Wildtype architecture,aneuploid,NA,NA,NA,NA,1,670191,670190,518203,151987,1.810232852052745,2,2.0793537787424587,1.7968064993905946,60.1738554,52,88.31984817494788,0,4745,aneuploid
2929,125,9,1657,gap1_2,G04,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513053,521595,8542,5151,3391,2.143459175421016,2,2.4423539872021935,2.2574042078506045,60.73318585694187,54,90.44382945233843,0,4937,LTR NAHR
2930,125,9,1657,gap1_2,G04,Wildtype architecture,ODIRA,in between DID2 and CAF4,YKR045C,NA,NA,511546,521576,10030,6658,3372,2.0637273827916385,2,2.4602702468641295,2.2080523346293375,57.53809970118506,51,80.99701754130074,0,4537,ODIRA one end
2931,125,9,2076,gap1_ltr_3,C06,LTR KO,ODIRA,DID2,NA,ttattggcttgcttttgtaattgttttgatgtaaactttagttggaaaagagtgttttccaaacctgctgcagaattacgtgacatttctcagtgcgatgtctgacttcctataCTTTCAAAGTAGCTCACATCTCATCAAACTGCTTTCACATTGATTCGTGTTCATTCTTATCATTTCTTTAGTGACACTTATTTTTACGCGAACGGGTAACACACTGCCATTTATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGC,NA,508569,527471,18902,9635,9267,2.1836264623805337,2,2.303317320789582,2.2022153001881972,55.41519247557364,49,79.85007581554761,0,4528,ODIRA one end
2936,79,6,2071,gap1_all_2,B05,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,NA,NA,460480,520246,61766,57724,4042,1.7466544944700386,2,1.9071026440335328,1.7283863329522091,129.25475868926273,118,160.22452601460375,0,6977,transposon-mediated
2937,125,9,2071,gap1_all_3,A06,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,NA,NA,459785,520993,62208,58419,3789,2.065459084563351,2,2.010470958629355,2.007462274,96.86663636639928,89,123.07008128786784,0,5359,transposon-mediated
2938,125,9,2071,gap1_all_3,A06,LTR and ARS KO,complex CNV,downstream of GCN3,unresolved,NA,NA,489885,520000,30115,28319,1796,3.636013888686383,4,3.3422607138898184,3.365781803517893,72.94814389192773,64,92.21138576593464,0,4754,complex CNV
2941,125,9,2071,gap1_all_2,B05,LTR and ARS KO,complex CNV,downstream of GCN3,unresolved,NA,NA,489873,521500,31627,28331,3296,3.094639200991785,3,2.9718593463947216,2.9560710748974817,60.679836295739086,53,86.07729252089169,0,4746,complex CNV
2942,125,9,2071,gap1_all_2,B05,LTR and ARS KO,transposon-mediated,LTR 490kb,new LTR,NA,NA,490899,520086,32187,28305,3882,2.3556673632574032,2,2.177237631639794,2.228244673,76.06275592248615,67,100.74108834331784,0,5245,transposon-mediated
2943,125,9,2071,gap1_all_2,B05,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,NA,NA,458141,520246,64105,60063,4042,2.1786098747672424,2,2.3627669506371376,2.162074082346757,42.30260012235484,37,57.78024417320937,0,3608,transposon-mediated
2944,125,9,2071,gap1_all_2,B05,LTR and ARS KO,transposon-mediated,LTR 490kb,new LTR,NA,NA,490211,520351,32140,27993,4147,2.191284006147155,2,2.183941531311824,2.106518744556656,70.54280739539622,63,96.89605550811464,0,5318,transposon-mediated
2945,125,9,2150,gap1_ars_5,E08,ARS KO,complex CNV,"LTR 490kb, in between DID2 and CAF4","DYN1, CCP1",NA,NA,490211,522351,32140,27993,4147,2.2087369134994272,2,2.4286787979452535,2.1600112278263213,80.55300607443594,71,116.9916565,0,6137,complex CNV
2946,125,9,2150,gap1_ars_5,E08,ARS KO,ODIRA,OSH6,CCP1,ATGCCTGCTGCTTGTTTGGTAGATCCCAATAAGCTGTAAAATATTCACCAAGGACTGGGTTCAATGGTTTTTTTACAGCCTTTGGAGCAATATGCCAGCCTGCCAAATACCATTGAACCCAGTCCTTGGTGAATATTTTACAGCTTATTGGgatctaccaaacaagcagcaggcatattactgtctcttatacacatc,ATGCTTAAGTACTTGGGATCCTGAATCAAAGAATAATCAGTGGGCAGCATCATGTAGCCGCTCTTAGAGTCCCACTGTTCGTTGTTCGCGTCGTTCTTTTCCAATTTCCAGTCTTCATTCAGCAAGTTCAAGTAAAACTCATTGGTAAAGACGTTGTTAGCGGCTCCCCATGGCCCTTCGTATCCAGAGTTCTTCAAGTTGCTCTTATGGGGGCTCACGCTCTGGGCAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAtagtgtagATCTCGTtggtcgccgtatcattaaaaacggggggggggggg,457020,669931,212911,61184,151727,1.9367924536824812,2,2.0431654354155815,1.9015139699499437,81.38095576859403,72,114.96904329493708,0,6046,ODIRA
2948,125,9,2150,gap1_ars_5,E08,ARS KO,LTR NAHR,LTR 460kb,LTR12,NA,AGTCGATTTAGATTTGTTGAAACAAGAAATTGCAGAAGAAAAGGCAATTATGGCCACAAAGCCAAGATGGTATAGAATCTGGAATTTCTGGTGTTAATCCGCTCTTTCCTCATAAGGAAATCCCCTCTTATGATCTTGAGAAATGGtctcttatacacatctccgagcccacgagacgtagaggaatctcgtatgccgtcttctgcttgaaaaaaGGGAA;atggaatcccaacaattatctcaacaTTCCCCCATTTCTCAAGATCATAAGAGGGGATTTCCTTATGAGGAAAGAGCGGATTAACACCAGAAATTCCAGATTCTATACCATCTTGGCTTTGTGGCCATAATTGCCTTTTCTTCTGCAATTTCTTGTTTCAACAAATCTAAATCGACT,458977,520289,71312,64227,7085,1.6269086278541187,2,1.8803290769948413,1.6511746022646536,81.73960183361919,73,119.39634005303655,0,5978,LTR NAHR
2951,79,6,1657,gap1_3,H05,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513704,520211,6507,4500,2007,2.6386961316091995,3,2.510130769448007,2.472130792727024,84.0754788,76,107.18504,0,5830,LTR NAHR
2952,79,6,1657,gap1_3,H05,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513706,520227,7521,5498,2023,2.9832989169769313,3,2.3242337243058393,2.6483076094673894,137.42415592733911,132,168.4755344777011,0,7091,LTR NAHR
2953,79,6,1657,gap1_4,G06,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513972,521466,11494,6232,5262,1.9500257168170103,2,1.6791416999505524,1.830682566844669,101.93824542736118,95,120.00477947684124,0,5939,LTR NAHR
2954,79,6,1657,gap1_4,G06,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513573,521466,11893,6631,5262,2.132658618479756,2,1.8632735905283595,1.9160943992062045,63.45964351415418,60,83.84757760091739,0,4390,LTR NAHR
2955,79,6,1657,gap1_4,G06,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513978,521887,8909,6226,2683,2.1089978775325227,2,1.5841071604497945,1.869216559528156,82.65592572437221,78,133.96445593844413,0,6521,LTR NAHR
2956,79,6,1657,gap1_4,G06,Wildtype architecture,ODIRA,unresolved,SHB17,NA,NA,511546,524122,12576,6658,5918,2.850559519511283,3,2.872361597,2.6392165317316554,89.26316767595316,84,127.7713397903661,0,6080,ODIRA one end
2957,79,6,1657,gap1_5,H07,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513585,521903,7318,4619,2699,2.628971776180536,3,2.433637714096196,2.374198254152775,82.34769780220655,76,114.43079559336265,0,5637,LTR NAHR
2958,79,6,1657,gap1_5,H07,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,NA,513531,521932,7401,4673,2728,2.657144194,3,2.489934204,2.4642259205372197,78.45199545727881,72,112.36996127434423,0,5513,LTR NAHR
2960,79,6,1657,gap1_5,H07,Wildtype architecture,ODIRA,CAF4,YKR041W,catgcaaatagataagaaaaattacaatatgttgattactGAAGTAAGGATGCCACTCTGAAGTTATGGGACTTAAATCTGAGTAGAGAAATATATTGTAATTTTTCTTATCTATTTGCATGCAATTAACAGTAGCAAGGTGACCAGGCAGCTCTCCAACTTGTATCCCATGGTTCAAATCCCACACTTTT,gcctttgaccaggcaaaaggtatcagctctaaggttgtaacacacttgtagcctgctatgctttcaccgtactcgaaaagcttagcctcatgacTAGTTGTACCAACGCCCTTTATTTTCTTTTTTTTCTCTTGACCCTTCGTCGTATTCATCGCCACTGGTACACGCCGTATGGTGCTTTTTTGCTCATTTTAGTTTTGACGTTGCGATGGTTTCGCGGACCAATCGCATGGGTGGTGGTGGAT,509454,521908,12454,8750,3704,2.767808972648191,3,2.477111617316168,2.5179885160315636,85.50247057877456,79,120.55462738086948,0,6096,ODIRA
2961,79,6,2076,gap1_ltr_3,C06,LTR KO,ODIRA,DID2,TIF2,ccattttcgtcagcaactttgctcattaGTTCATCCACCTTATCGTTGTCCACCAGCATGGCATGGAATTGAAGCAAAGTGCAAAACTGGACAATGTTCCGGAGATAAAGGCGAAAGAGGTTAATGTTGACGACGAAAAGGAAGACAAACTTGCACAAAGACTAAGAGCATTGAGGGGC,,508970,558828,49858,9234,40624,2.7383225929220125,3,2.6104614267840036,2.3995063756322863,59.114681928770075,54,101.51060722317062,0,5925,ODIRA
2963,79,6,2076,gap1_ltr_4,D07,LTR KO,ODIRA,unresolved,RHO4,NA,gctgatatcttatgtccaaggaacatttccgactgattatattcctactattttcgaaaattatgtcacaaacatagaaggacccaacggtcaaattatagaattggcattatgggacactgccggCCAAGAAGAGTATCGTAGACTTAGACCGCTTTCATATACGACTGCAGATGTGCGGATGGTGTGCTATTCTGTTGGTAGTAAGACATCGCTTAAAAATGCTTAACCTCTGGGAACCAGAGATCTTCCACAATTTTAAGCGATGTCTTACTACCAACAGACTAGCACTCCATCAGCACATCTGCATGGGTATCTGAACGAGGTCTCTGTGTACTA,514791,551816,37025,3413,33612,2.2617492788750515,2,2.827341190989126,2.3124428053124944,24.50321179795681,22,38.51949122601146,0,2303,ODIRA one end
2964,79,6,2076,gap1_ltr_4,D07,LTR KO,ODIRA,SPC34,TRK2,NA,actcggcggtgtcgaatatcgtgctttgagattgctgtGCTGCATTCTCATGGTATACTACATCGGATTCAACATTTTGGCGTTTGTGAGTCCAATGAAGACGGAGTTTCTGCCAAAGGTTGGCTGCCACGATAGATAGTTGGTGCTCATTGTTCTGGTGAAGGGGTGGCCTATATCACCTTCACGTCG,511465,532000,20535,6739,13796,2.6150212798451515,3,2.582625767607851,2.4253821000263724,24.195586458000054,21,42.37814987398465,0,2793,ODIRA
2965,79,6,2076,gap1_ltr_4,D07,LTR KO,ODIRA,CAF4,PET10,NA,NA,509094,528138,19044,9110,9934,2.434549333607169,2,2.388432395046256,2.3183184980534093,28.693037699235713,25,56.96821355263162,0,3751,ODIRA
2966,79,6,2076,gap1_ltr_5,C08,LTR KO,ODIRA,unresolved,upstream of Lysine tRNA,NA,cctttattaGTTATTTATATGAGTTAGCCCTCCGAAGAACTCATATAAATAACTAATAAAGGCGAAATAGTGGTCACCACCATCACACTACACCCATATCAACGACAAGAGTTTAATTTGACCGTGGAAATTTATTACTGCTGATTTGGGTTCTATGATA,514847,582279,67432,3357,64075,2.674965601042505,3,2.331046362644582,2.433571307898642,100.79514623177845,93,146.0128337439645,0,6764,ODIRA one end
2968,79,6,2076,gap1_ltr_5,C08,LTR KO,NAHR,URA6,YKR005C,ggagactagtatgcccgtcatcgagtGCTTTGAAACCAAATCGAAAGTCGTCCGTGTTCGTTGCGACAGATCCGTCGAAGATGTGTACTTGTTACGATTTTAGTTCTTGGAAACCATCTTCTTTTGGCTTTTGTCGACGTGATTAAAGTCGTCCCTGTTTCAGTATCAGTCTTGGTC,NA,390000,669931,279931,128204,151727,2.799058870408885,3,2.279662318574213,2.5240357615187774,81.47234204805606,74,123.8329874,0,5800,NAHR
2970,79,6,2076,gap1_ltr_6,B09,LTR KO,ODIRA,DAL80,NFT1,CGTGGGGTGGTCCTCTCCGTCACAATCATCCACTCCAGCAGCAGCTGAAAGTGTAGGCGAGGACCACCCCACGTGCCAGAATTGTTTCACTGTCAAAACGCCCCTATGGAGAAGAGATGAACAACAACAATGTGAACACTAACGGTACTGTTCTCTGTAACTGTCTCTTAtaca,ccttttcgagttGGCTAAAGTCTCATTCGATAATAAAAGATAAGACAACTCGAAAAGGTTTTCGAACTCGCCACTCTGCCTACAGAGGCGGTAAAAAATGGTATTTCGATCAGATATTAGAGTGTATGGATGATCATACTCCTTGACTCTGCCCATTTCCATC,508135,660508,152373,10069,142304,2.886860187285498,3,2.3466911770815053,2.595035528,147.0755368600847,137,210.32199809333608,0,9081,ODIRA
2971,79,6,2076,gap1_ltr_6,B09,LTR KO,ODIRA,in between DID2 and CAF4,SRP40,GAGCTGGACAAGAGACAGTAAATGTACAGCATATGTGGTCATACATACATACCATAGCTGAAAAAACAAGCTAACAGGTCATGCATTTTTAGTAAATCATGACGTTTCCAGCTATGTTCTGTATGTATGACCACATATGCTGTACATAAATccgagcccacgagacccacggccatctcg,AAGAGACAGCTTGCTCTTTTCTTGGTTTCATCTTCTGATTCGGATTCCGAAGAAGATTCGTCAGAACTAGAGCTAGAGGAAGAAGAATCAGAAGATGAAACCAAGAAAAGAGCAAGAGAATCAGACAACGAAGATGCTAAGGAGACTAAAActgtctctt,508715,615386,106671,9489,97182,2.842089938170025,3,2.5797473546783594,2.6120604734532926,98.65442299565026,92,144.9478384599534,0,6766,ODIRA
2974,79,6,2076,gap1_ltr_7,H09,LTR KO,ODIRA,CEN11,TEL11,gattctgcatttatctttctcttgaaccgtaaatatcattttcataACTCACATGATAAAAAAATATTTAAAATTTTAAAAAAAGAAATTGGTAATTAACCTCACCTAACTTCTTTAATCACTTCTCAACTCTATTTACAATTTTGCTTTGATTTATACATATGAAGCACTTTACAATCCTAACTATGTGTATTTGA,NA,443423,669931,226508,74781,151727,2.9057860215866236,3,2.5226132420115253,2.527650653802319,51.64111947782363,46,93.17004638856896,0,4999,ODIRA one end
2975,79,6,2076,gap1_ltr_7,H09,LTR KO,ODIRA,DID2,DYN1,caacagttgtaatctttcatttttctttcttatagcattggatgcatatatacgagatatatGCTCACATCTCATCAAACTGCTTTCACATTGATTCGTTTTCATTCTTATCATTTCTTTAGGGGCAATTTTCCAGCACCAGATAAATGTCACGTAATTCTGCAGCAGGTTTGGAAAACACTCCTGTCTAACTAAAGCTTATACACATCTCCGAGCCCACGAGACGATCATTCATCGCGTATGCCGGCTTCTGCTTGGAAAAGGGGGGGGGGGGG;gctcacatctcatcaaactgctttcacattgattcgttttcattcttatcatttCTTTAGGGGCAATTTTCCAGCACCAGATAAATGTCACGTAATTCTGCAGCAGGTTTGGAAAACACTCCTGTCTaactaaagCTTATACACATCTCCGAGCCCACGAGACGATCATTCATCGCGTATGCCGGCTTCTGCTTGGAAAAGGGGGGGGGGGGG,ATCGTTAACTTCAGAGTTGTGTCGAAATTTGGACTATGTATTACTTCGAGTGTTGTGTCGAGTTGAAACGCTCTTGTGGTTATCATTTTATACTCACTGGTTAAGCTTTTAAATTTCGAAGTTTCGAGCGGTAAGAAGTTAACGATAGATTctttaaagatgataaaatcgtcactatagacatttttagagagacaaagaagacaattcacaaggtgtta,508112,546591,38479,10092,28387,2.879180092652398,3,2.568249704034199,2.4973348839602085,50.58120329439205,45,83.31436064889279,0,4779,ODIRA
2977,79,6,2076,gap1_ltr_7,H09,LTR KO,ODIRA,DAL80,ESL2,TCTTCAAGCTGATAGGCCTTGGTTCCCCGTGCAACTTCAGGAAGAGGCCTATCAGCTTGAAGACGGACACCATTCTGTCaagaaataggaaaaagctgaataacaacaatgtgaactgtcTCTTATACACATCTGACGCTGCCGACGAAACGATGCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAG,ggttggtacggaataccacagcaaatttgagtttatcagatttTCAAGTGTTAAATCCGTACCAACCTAGGGAAGGATGGAGTGGCAGATGGCCGCTGCTGCTGTGATGCAGACAGAAACATCGAACGAGTATTTTCATTTTCAGAAAGCCTTAATGGATTCTGAACAGAGGTTTCTGGCATAATATAGTGGAT,507285,629869,122584,10919,111665,2.4799542839742417,2,2.351376361474345,2.3016280443595343,53.121799868998686,47,82.95206128455968,0,4759,ODIRA
2978,79,6,2076,gap1_ltr_8,E10,LTR KO,ODIRA,in between DAL80 and DID2,YKR041W,NA,NA,507800,520234,12434,10404,2030,2.699609230427756,3,2.622799526705851,2.4274569331293048,56.400071521439656,52,77.18182845882643,0,4181,ODIRA
2979,79,6,2076,gap1_ltr_8,E10,LTR KO,ODIRA,CAF4,UTH,NA,NA,510239,523843,13604,7965,5639,2.928269342,3,2.369767894771723,2.655916208789888,84.94084930136157,80,120.09506633414328,0,5876,ODIRA
2980,79,6,2076,gap1_ltr_8,E10,LTR KO,complex CNV,SPC34,CCP1/SRP40,CAAGGCATATAGGAGCCTTTGAATTTGCGGATCATCCTTGAACACGGCTGATAATGCTTTGAATGTACTTAAAGTTATGGCCGAAGTAACAGATTTATGGCCACTAACAGAGTTCAAGCAGGATTACGACCAATTGTACCATAATTATGAACTTCTTTCTTGATGAAGCGCAATTTGGAAGAAAGTTGTTCATAATTATGGTACAATTGGTCGTAATCC,RECOMBINATION CCP1/SRP40:TGATGAGCTAGATTCAGAGTCACTGCTGTCACTGCTGTCACTGCTGCTGCTGCTGCTGCTGCTGCTGCAACTTTTGCTTACTCGCAATCCCACACGCGCCCCCCGCCTTCTCCCGGGCGTGCTAtctcGTAACCACGGATGGAACAACTGGGGGttA;acaggattcagagtcactgctgtcactgctgtcactgctgctgctgctgcTGCTGCTGCTGCAACTTGTGCTTACTCGCAATCCCAAAAGAGATCATCGTCTTCTCCCGGGGGTGGTAGTAACCACGGATGGAACAACTGGGGGAAGGCAGCTGCTTTGGCTTCCACTACACCGCTCGTTCATGTCtGCCTCTGTCGAAAAttA,511381,614541,103160,6823,96337,2.7430714725319194,3,2.5587568813449324,2.394119746909323,64.83655305419124,58,127.33212562929349,0,6033,complex CNV
2981,79,6,2076,gap1_ltr_8,E10,LTR KO,ODIRA,SPC34,DYN1,CTTTGGTTATTGGATTCTTCTTCCATGAGCACGCTTCCATTTTCCAAGGCATATAGGAGCCTTTGAATTTGCGGATCATCCTTGAACACGGCTGATAATGCTTTGAATctgGTACCTGAACTTGAATTTGAAATGACAGAGGAgtagggaaatcctcgacaaagatggtttttctTCCTATAAGAT,gtatcttgctttacattcgttatataaatgaacggaagcgcgggcgaaGGGCTCTGTGTATGATCTGAACTCAGGGACTAGCTTGAAAATGGCTTTGTAATAAATTTCATAAATTTGAGAAAGAGATTTTCCGCTGGGATAACCCAGGTAGAATTCCTATGTCAGAAAGATTTACACGACATGCTGCTATCTGTCTCTT,511447,543629,32182,6757,25425,2.711638581190347,3,2.731470465020087,2.4609504989069353,69.50649974686763,63,101.78704014509232,0,5608,ODIRA
2982,79,6,2150,gap1_ars_1,E04,ARS KO,LTR NAHR,LTR11,LTR12,attcctatgtgctcgagtacaatTTCTAGTATATTCTGTGTATGTATATTATAGCCTTTATCAACAATGGAATCCCAACAATTATCTCAACATTCCCCCATTTCTCAAGATCATAAGAGGGGATTTCCTTATGAGGAAAGAGCGGATTAACACCAGAAATTCCAGATTCTATAC;attatagcctttatcaacaatggaatCCCAACAATTATCTCAAGATTCCCCCATTTCTCAAGATCATAAGAGGGGATTTCCTTATGAGGAAAGAGCGGATTAACACCAGAAATTCCAGATTCTATACCATCTTGGCTTTGTGGCCATAATTGCCTTTTCTTCTGCAATTTCTTGTTTCAACAAATCTAAATCGACTTCTCTTCTACCCGTATCAATGTCCATCTTTTCTGCTGGGATGAAAAGCTTCCAATTCCTCTTATAGATCTTGTGTCCGATGTACATAACCATAACAAGTGGGAAG,NA,513979,520247,8268,6225,2043,2.6212077364607285,3,2.130795066497695,2.321282345832296,210.1441220780536,203,239.3627041645624,0,9686,LTR NAHR
2983,79,6,2150,gap1_ars_1,E04,ARS KO,NAHR,in between LTR11 and CNV reporter,DYN1,GGTCGTCGGCAnCGTCAGATGTGTATAAGAGACAGATAATCGATGAAACGATAATTTACATCATATTTAACAGCAAATTTGCTTAGTAGACTCTTGCGGGCGTTCCATCCGTGTGAAATACATCATTTACACCTCGCTCTGGGTCAAGTAAtcaaaaaatacctcgtgtggctgc,NA,513856,540170,26314,4348,21966,2.0144495489807723,2,1.7004624972071831,1.8260105077447857,139.86842084122836,133,166.24537469271968,0,7659,NAHR
2984,79,6,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,CTATGTGGTATACTATCATATGCGGTGTAAGAAGAGGACATAAGGTTGAAAAATAGTCATCAATCTAATGAAAGCTGAAATGCAAGGATGGATATTCTCTATATAATAGGACCTATGCTTCGGTTACTTCTAATGAAACATATAAAACGAAAGCAGAAAATAATCGTAGTATTATTATGTagaaatatcg,NA,513701,520247,7546,5503,2043,1.9366989114200497,2,1.7053525356298636,1.7953648407919296,102.99591890515576,98,118.93053020707949,0,5754,LTR NAHR
2985,79,6,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,ATataatagGACTCACTAACATATAAAACGAAAGCAGAAAATAATCGTAGTATTATTATGTAGAAATATCGATTCCATTTTGAGGATTCCTATGTGCTCGAGTACAATTTCTAGTTGTTGGAATAAAAATCAACTATCATCTCTGTCTCTTATACACATCTGAAGACATCTGCTTCTGAGC,NA,513813,520937,6124,4391,1733,2.3346811932607716,2,1.4317699098227843,2.0651096310731023,93.89340481391632,85,155.40170272336917,0,6963,LTR NAHR
2986,79,6,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513600,520247,7647,5604,2043,1.8020391122596964,2,1.9255286077081757,1.715508019331599,78.63949335060119,72,124.45040537070663,0,6340,LTR NAHR
2987,79,6,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513818,520271,12453,3386,9067,2.4787784182906965,2,1.3921147933656788,2.0873048697351253,107.24379709278102,98,167.5257429911248,0,7342,LTR NAHR
2988,79,6,2150,gap1_ars_4,F07,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513707,520247,6540,4497,2043,4.030488872038415,4,3.256415860806666,3.4808112751495255,104.09490206010088,98,124.9584019950513,0,5855,LTR NAHR
2990,79,6,2150,gap1_ars_4,F07,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513816,520247,6431,4388,2043,3.151840931174016,3,2.5746208381355777,2.717219672,88.54968682040223,82,141.97900556516535,0,6980,LTR NAHR
2992,79,6,2150,gap1_ars_6,D09,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513694,520247,6553,4510,2043,3.5593180942338343,4,3.023580148245026,3.1784421414472117,114.30425929387384,105,144.85968283481077,0,6693,LTR NAHR
2993,79,6,2150,gap1_ars_6,D09,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513655,520247,6592,4549,2043,3.635905875970259,4,3.0293383503170115,3.337982440589581,92.34747361446075,86,134.23324692788117,0,6424,LTR NAHR
2994,79,6,2150,gap1_ars_6,D09,ARS KO,complex CNV,CAF4,UTH1 and DRE2,CACTCTAGACGTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCTACAGATATCTTTCCAAACTTCTACTGTTCAGAGAGGTGGCTTGGCCCGAACCCATATAGAGATACTCTTTTTTACTCTCGCTCGTGGTAATCTTATATGTCATTCatggttagttttttttttatgactattttttttttccattac,caatactacgttaacaacgctggtgtctctgtggaagttggttgtatctggggtactgagggttccggtgtaggtaactgggccccagttgtcttgggtgctggttacaCTGATGGTATCACTTACTTGTCCATCATTCCAAACCCAATATTTTGATCAAGTGGATACCAGCGATGATTCCATTGAAGAAGAAGAATTAATCGACGAGGATGGTTCTGGTAAGTCAATGATTACnATGATTACATGCGGTAAATCCAAAA;CTGATGGTATCACTTACTTGTCCATCATTCCAAACCCAATATTTTGATCAAGTGGATACCAGCGATGATTCCATTGAAGAAGAAGAATTAATCGACGAGGATGGTTCTGGTAAGTCAATGATTACnATGATTACATGCGGTAAATCCAAAActg,510858,578020,67162,7346,59816,3.2004156385181997,3,2.220410872338731,2.754947769283249,104.4217258,97,178.43503534341622,0,7980,complex CNV
2995,79,6,2150,gap1_ars_6,D09,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513713,520247,6534,4491,2043,3.8886633597762104,4,3.440542899662605,3.4582706227593367,112.78749328865362,106,159.8288018463385,0,7265,LTR NAHR
2996,79,6,2150,gap1_ars_7,A10,ARS KO,LTR NAHR,LTR 460kb,LTR12,NA,NA,458747,520247,61500,59457,2043,1.8876177220514383,2,1.489976633213676,1.6795875856688856,31.164080501869293,28,56.22820344917383,0,3189,LTR NAHR
2999,79,6,2150,gap1_ars_8,G10,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513508,520247,7739,5696,2043,1.9560082426465049,2,1.667866979,1.7588694509811542,84.45382176,78,127.8804647732521,0,6505,LTR NAHR
3000,79,6,2150,gap1_ars_8,G10,ARS KO,ODIRA,LTR11,DYN1,NA,catattcccctgtgagttatttagttcctccaaaagtcgctTGTCTAGATTCTTCAGTTTCAACTTGTATTCGGTATTCAATTTTATCAAATCTTCCCTTTTCCTTTGCATTTCTGCATTCTCTTCTGTCAAAGTGATGTCAAAAATTCGTGTCTCAATACTTTCCAATATTCCTCAGATCTAGGGTAAGGT,513643,540592,26949,4561,22388,2.815195735979206,3,2.641136911815093,2.5554439325172935,86.71194972032815,79,121.79422170677832,0,6295,ODIRA
3001,79,6,2150,gap1_ars_8,G10,ARS KO,ODIRA,LTR11,TIF1,NA,NA,513694,558807,45113,4510,40603,2.870081909682065,3,2.4540282599043888,2.554721826046367,75.58005577115301,70,83.26525085730233,0,4449,ODIRA
3002,79,6,2150,gap1_ars_8,G10,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513600,520247,6647,4604,2043,2.7443620165248888,3,2.585767216346873,2.486318006905875,68.87450803129596,62,108.42236014302668,0,5932,LTR NAHR
3003,79,6,2071,gap1_all_4,B07,LTR and ARS KO,ODIRA,"before CEN11, VSP1",Microinsertion upstream of alanine tRNA??? check again later,GTAAACTGCTTCCTCTGTATAAATCAAAGCAAAATTGTAAATAGCGTTGACAAGTGATTACAGAAGTTAGGTGAGGTTAATTACCAATTTCTTTTTTTAAAATTGGTGAAATAAGATTACGTTTAAAGGAGCATTAACAGGTTTACTCATAacaatcaatttaagcatcaaagcctttggtataatatcggcaa;ccactaaaaacaagaaggaattggcagctttggaatccccacctcctGTTTTAAAAGCTACTGGCCAAATGACAGAGAGGGAAACAATGGAAACAGAAGTAATCAAGTTGTTGATTAGTAGTTATTTCTCTATTGTCAAAAGAACCATTGCCGATATTATACCAAAGGCTTTGATGCTTAAATTGATTGTTATGAGTAAACCTGTTAATGCTCCTTTAAACGTAATCTTATTTCACCAATTTTAAAAAAAGAAATTGGTAATTAACCTCACCTAACTTCTGTAATCACTTGTCAACGC,NA,439912,656147,216235,78292,137943,2.852097626958746,3,2.457267938060478,2.504065288329004,101.44386457271249,92,149.6823465907649,0,6898,ODIRA
3004,79,6,2071,gap1_all_4,B07,LTR and ARS KO,ODIRA,OSH6,upstream of BAS1,NA,NA,442376,638358,195982,75828,120154,2.5652700353841817,3,2.4610758497897405,2.387785819756736,90.77455632,81,108.15656539750184,0,5868,ODIRA
3012,79,6,2071,gap1_all_6,G08,LTR and ARS KO,complex CNV,NA,NA,URB1:CTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAACTAATAGCTCTAATTCTTTAATTTCTTCAATGAAGAGCTCATCTTTTTTCCAGTATATTTCGGCGCTACCATGAGAAATGGGTGAATGTTGAGATAATTGTTGGGATTCCATTGTctgtctcttatacacatctcagatcccacgagac,,414869,669931,255062,103335,151727,2.7535892679514693,3,2.5522157543422255,2.4666123002277796,35.04707569984535,31,66.81470301694658,0,3782,complex CNV
3013,79,6,2071,gap1_all_6,G08,LTR and ARS KO,complex CNV,NA,NA,GCN3:AATGAGAATCATACTGCTCAAATAGTGACAAAGCCATCATTAATCATAGATTTCTTCATAGTGATTGATAGAAAGAATTTTAAAAGTCCTACGTATACCAGAAATCGAGAGGAAGGATGTCGGAGTTTAATATTACAGAAACTTATCTAAGgtttttattcttaatagcgtgaccaatgcttcaatggcagcaatcggcattgtcatctcc,,489843,669931,180088,28361,151727,2.640279418920356,3,2.250093975744737,2.404608080713954,34.04165891975293,30,56.15988988397145,0,3307,complex CNV
3015,79,6,2071,gap1_all_7,F09,LTR and ARS KO,complex CNV,transposon insertion but not sure what after that,NA,MRT4:GAGATCTACACAGGTTGACTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGCATATATGGTATGCCAGCAGGAGGAAAAAAAAACCGATAATATACGTTCGTTCAGACTATTCAAGACCGAACACGAAAGCACCACTAACATTTACAActgtctcttatacacatctccgagcccacgagacattgtaatatcgcgtatg,GAP1:GATACGGGTAGAAGAGAAGTCGATTTAGATTTGTTGAAACAAGAAATTGCAGAAGAAnAGGCAATTATGGCCACAAAGCCnAGATGGTATAGAnTCTGGAATTTCTGGTGTTAAGATCTTGATATAAGCCCTGTCATTGATTGCAACTGCACAAATTCCGGAGATTGAACAGCCAACACAAAGATAGTATTTGGGACTTAGCGGGTTGAGAACGGTAATTATATTGTTGGAATAGAAATCAACTATCATCTACTAACTAGTATTTACATTACTAGTATATTATCATATACGGTGTTAGAAG;ATATAATTACCGTTCTCAACCCGCTAAGTCCCAAATACTATCTTTGTGTTGGCTGTTCAATCTCCGGAATTTGTGCATTTGCAATCAATGACAGGGCTTATATCAAGATCTTAACACCAGAAATTCCAGATTCTATACCATCTTGGCTTTGtggccataattgccttttcttctgcaatttcttgtttcaacaaatctaaatcgacttctct,423859,669931,246072,94345,151727,2.875395468785948,3,2.132376886376044,2.524123014,84.45993743447526,76,148.97132091875943,0,6848,complex CNV
3016,79,6,2071,gap1_all_7,F09,LTR and ARS KO,ODIRA,YKR018C,ESL2,gatatagatttaagtcaagcaacaattgatgagtttgtccattctggcaagtcttccattgcttgtaGTCCTAGCTCACCTCTCAACCTGTTAATTGCAGGAGAGTTGCCAATGTGGGCGCCAGATAATCTTTCAGTCCTCATGCTATGAATTTGTTCAGCAAATTGTAAAAGATCCTTATCCTTTTGTTCTTCAGGAGTCAGTTCATAAGGTATATC,NA,476176,631631,155455,42028,113427,2.8963307615134015,3,2.5157230412057365,2.6228965037172487,70.77939975490918,66,82.20034850857141,0,4369,ODIRA
3017,79,6,2071,gap1_all_7,F09,LTR and ARS KO,complex CNV,YKR018C,ESL2,GATTATCTGGCGCCCACATTGGCAACTCTCCTGCAATTAACAGGTTGAGAGGTGAGCTAGGACTACAAGCAATGGAAGACTTGCCAGAATGGACAAACTCATCAATTGTTGCTTGACTTAAATCTATATCTGTCTCTTATACACATCTCCGagcccacgagacaccgatcgatctcgtatgcc,NA,475593,638575,162982,42611,120371,3.4992062278027563,3,1.9956222908792791,2.9591358736154247,58.596879293326005,53,73.66171133213936,0,3714,complex CNV
3018,79,6,2071,gap1_all_7,F09,LTR and ARS KO,complex CNV,"YKR018C, MRT4, ECM9",ESL2,NA,NA,424615,671675,247060,93589,153471,3.4271044010068614,3,1.5234048453154003,2.827735645076375,55.25682938235904,46,117.80452678933088,0,5601,complex CNV
3019,79,6,2071,gap1_all_8,C10,LTR and ARS KO,transposon-mediated,new LTR,new LTR,CTAGTTAGTAGATGATAGTTGATTTCTATTCCAACACAATCAATGACAGGGCTTATATCAAGATCTTAACACCAGAAATTCCAGATTCTATACCATCTTGGCTTTGTGGCCATAATTGCCTTTTCTTCTGCAATTTCTTGTTTCAACAAATctaaatc,ATATATAATTGTATGAAGTGTAAGAATATGATATAAATAATGAGAGCACTCATAGAGAGTAACGGCGCTGAATTGTAAGAACTGTCACGTAGTAACACAATCACTGAAAGCATATAAAGTGAAATGAGAAACGGTAGTGTTGGAATAGAAATCAACTATCATCTACatctgacgctgccgacgatcattacagtgTAACTAG;atatataattgtatgaagtgtaAGAATATGATATAAATAATGAGAGCACTCATAGAGAGTAACGGCGCTGAATTGTAAGAACTGTCACGTAGTAACACAATCACTGAAAGCATATAAAGTGAAATGAGAAACGGTAGTGTTGGAATAGAAATCAACTATCATCTACTAACTAG,514847,520246,5399,3357,2042,2.132030035323482,2,1.7174445687754103,1.864402439434246,100.59706008455198,95,135.06621740808984,0,6961,transposon-mediated
3020,79,6,2071,gap1_all_8,C10,LTR and ARS KO,transposon-mediated,new LTR,new LTR,GCAGCGTCAcaagcgcccattctgaccattaaactatcacggaacGATGTGTATAAGAttttttcGACAGGTTTTAAATATTTATATTTCGTCGAATTGGTACCTCTACAGCTCAGAAGCAGATGTCTTCAAGTTTTTTTATTGTGTCTAAATAAGAATCTGTTGGAATAGAAATCAACTATCATCTACTAACT,tcctaGAAGAAAAGGCAATTATGGCCACAAAaatgtgatgtGCCAAGATGGTATAGAATCTGGAATTTCTGGTGTaTAAGATCTTGATATAAGCCCTGTCATTGATTGCAAATGCACAAATTCCGGAGgctataatatCTGTCTCTTATACACATCTGACACAAAGATAGTATTTGGGACTTAGCGGGCTGCCGACGGTAATTATATTGTTGGAATAGAAATCAATCATTA,513945,520246,6301,4259,2042,3.254730211379915,3,2.9267967287523793,2.9312190333342123,86.25011045822151,81,107.62808868131584,0,5441,transposon-mediated
3021,79,6,2071,gap1_all_8,C10,LTR and ARS KO,complex CNV,"FOX2, DBP7",MSA2,gattataatgatttaatcaccaaagcaaaaaaattacctcccaatGAACAAGGCTCAGTGAAAATCAAGTCGCTTTGCAACAAAGTCGTAGTAGTTACGGGTGCAGGAGGTGGTCTTGGGAAATTTTTCGGAGTTGATGGGAATATCGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACATGTAAATCTCG,TAGGCCCCAGTATTGTAGCCTTACCATTTTGCCCAATAGACAGTGAAAATTTACCGAAACTGGAAGACCGGCCGTGAACCTTCATTGAAGACGATGtacgagtctttACACAACAATTGAAGGTGAcaggctttttctttggtacaggtttctccatttTTGGTAATCCAATGAGGAGGGCGTTTGCATTGAAGG,457670,587362,129692,60534,69158,2.9848326981862687,3,2.7160135958809475,2.5797743987137753,94.02984297499358,85,140.2932530453424,0,7351,complex CNV
3022,79,6,2071,gap1_all_8,C10,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,CcccgcgcgtataagttacgccttgaatgatataagccggtaaagtttctagatctcgtgatgcattacccttggttaggacatcgtccggctaagggcgaaacctcatacttggttggtagttctgTTTTTATGCTGGATGGATGGCCCTCTGGAATGCATCCTTCACGAACACAATTTATGAAACCTCAGGTTTGATGCTCCGGAAAGCCTATTTCTCACGTTCAAATTAAATTCCGGCACTTAATGCGCATATAAAAACATAGTTGAGAACACTATTTCGCCTTTATTAGTTATTTATATGGGTTAGCCCTCCGAATGTTGTTGGG,CCTACCGGTGTTTGGGGTTCCTACTGGGGGTTATTTATGGTTATTATTATGTTCATTGCCCAATTCTACGTTGCTGTATTCCCCGTGGGAGATTCTCCAAGTGCGGAAGGTTTCTTCGAAGCTTATCTATCCTTCCCACTTGTTATGgttatgtacatcggacacaagatctataagaggaattggCAATTTCTTGTTTCAACAAATCTGTTA,459816,520246,60430,58388,2042,2.034765560892414,2,1.6328313343595042,1.7419833351277654,99.75057941393376,92,139.38853108731044,0,6834,transposon-mediated
3023,125,9,1657,gap1_1,H03,Wildtype architecture,ODIRA,CAF4,AIM29,TAGCGTAAGGATTTGGGATTTGAGGACAAGCTCAATTCTTGACGTGATgacattaaaatgcctgcaTGTCCATCGAacaatggtGCCTGTTACCAATTTTTCGGAATCAAACTTCAAACTTGTAATTCCATCGGTATGGCCTTCTAGTAATCTCACCGGTTTGCCAACTCTTAGATCCCATAGTC;tagcgtaaGGATTTGGGATTTGAGGACAAGCTCAATTCTTGACGTGATTGTCCATCGAGCCTGTTACCAATTTTTCGGAATCAAACTTCAAACTTGTAATTCCATCGGTATGGCCTTCTAGTAATCTCACCGGTTTGCCAACTCTTAGATCCCATAGTC,ttcgagccccctatgaggagttATTTACTTTTTTAGATTCGGCGTTCAATGCTAAAGAAAAAAAATGAAAATAAGTTTCAATTAATAGTGAAAGAAAAGGAAGGAAGTTAGAACTGAAATGCGTAGACTACCTCCCCCAAATTTTCAGCCTTTTAGTTGAATTCATGAAATAA,508987,582422,73435,9217,64218,2.6780358341290156,3,2.3452666731727763,2.474034929262952,92.98767389768098,86,128.9826004195899,0,6077,ODIRA
3024,125,9,1657,gap1_1,H03,Wildtype architecture,ODIRA,KAE1,HFL1 and YSR3,tggtatagttaagcatccgcttctgcctaaacatgccaacagcgatctatcttatgattgcgaagctgagatgcttaactataccaaCGCCCAGTTTATTTGCAGAACCTTCAAGTCCAAGCGCAATGTAGTAGTCCCTGCCATTTTTGGGTGGGATAGTGTTCAAGTTGACCATTTTGCTCCCGACTGCATTAGGGAACGCTTGGGAATTCCCTTCACGTAAAAGATAAATATATGC,GAATTTCAATGCTGTGTTATGTAGATACAATATATATGTATAAGTCACTAAATGCATACATACGAGAGTCTACCTTAAGTTTGTnCAAGTGAAAAAAACTGGGCATAGCAATTGTATCCGTATGGATAGTCTTTGTTGATATGGTTTACGGtaatttaataagtgtctagttatggtgtaaaaagata;ATAGATGGGCTGGCTATCAAAAGCGAGAAAAAAAAAATGCTGAATTCCAAATATGTACTCATCGGGGTGAATTTCAATGCTGTGTTATGTAGATACAATATATATGTATAAGTCACTAAATGCATACATACGAGAGTCTACCTTAAGTTTGTnCAAGTGAAAAAAACTGGGCATAGCAATTGTATCCGTATGGATAGTCTTTGTTGATATGGTTTACGGtaatttaataagtgtctagttactgtctcttatacacatctccgagcccacgagaccacgagttatctcgt,512995,537537,24542,5209,19333,2.753007230058695,3,2.5913533552995625,2.5495028460230373,100.91763406812338,94,128.24150686512456,0,6078,ODIRA one end
3025,125,9,1657,gap1_1,H03,Wildtype architecture,ODIRA,BCH2,PCK1,cttaatacatcggtgatgcaattATTACTACCCGTACTGTATGGATTGCCATCCGATGAACCTTACATTTCTGATTTGATCAATTGCATCACCGATGTATTAAGCATCTCATAACAGACTATGCGATCCAGGTTTTAGACAACTTGATGACGAATGACCCGTCAAATTCTAGAT,agttaaaacgttatggtgcacaggcatcaagtaaAACATAACTGTGAAAATACCTTTTTTCATTTCACCGGCGTATTCGGTACCTAAAATGATCATTTCCATTGCTTTGAAGTTACTTTCTATAGTACTCTTTGAAGTACTATAGAAATTAACTTCAAAGCAATGGAAATGATCATTTTAGGTAC,492501,660485,167984,25703,142281,2.7628207960139166,3,2.5344084088386354,2.5113990746681107,96.12194803001778,88,151.05280250027275,0,7214,ODIRA
3026,125,9,1657,gap1_1,H03,Wildtype architecture,ODIRA,CAF4,SIR1,gaaatatatttggaccatagtCCATTGAAGGAGAAGACAGAAGAAATTGTTACACCATGTATCCATAATTTTGAGTTTATCTTCACACCTACACATAACGACAGTAAAATGCCTGCACGGTCATTAGACGAAATCACAGCCCTGTCTTTTGATTCTGAAGCTTTGGTTAGCGGATCTAGGGACAAAAAAATATTCCACTGGGATTTAACGACGG,NA,510412,642724,132312,7792,124520,2.692578792538884,3,2.612652123215019,2.4972366771079666,83.48068817604685,75,117.48798890278856,0,6311,ODIRA
3027,125,9,1657,gap1_3,H05,Wildtype architecture,complex CNV,after CEN11,before TEL11,NA,NA,442474,668042,225568,75730,149838,3.2051723569002677,3,2.7476413343083914,2.879049304629297,167.1848545152376,159,203.04171590581817,0,8303,complex CNV
3028,125,9,1657,gap1_3,H05,Wildtype architecture,complex CNV,"LTR, GAP1","YKR045C, YKR051W, YSR3",GAP1:CTTTTATCGTTGTATGGGACTAAAAGACCAATCATTAATAGCGACAGAATGTGATTTTCTGTCGCGATTAATGGTTGGTCTTTTAGTCCCATACAACGAGATAAGTTTGTTTGGTGCCTCCTCTGTGGCTGCTGCTGCTTCACCCTTCGTCattgccattaagactcacggtatcaagggtttgccaagtgttgtcaacgtcgttatcttgattgccgtgttatctg,YKR045C:CGTGGGATCGGACATGTGTATAAGAGACAGATCCAATATACTCTGTGGTGGGATCGCCAGAACGCTACAATTCGTCTCAAACGTCCTGTTAGAGAATATTGTGGGCCTCGTAGACTGAGCCCCACAATATTCTCTAACAGGACGTTTGAGAgtgtctcttttacacatctgacgctgccga; YKR051W:attttatgtcgATCCTATACGAGAATTTTATGCTTCATAAAATTCTCTGATAGGATCGACATAAAATTGAGCTGCTTCAGGCTTAATTATGCCACTTGCGCATGACACACTAAAAATGGGCACGAGCAATAGTATCCGTATGGATAGTCTTTGTTCATATGG;YSR3:GACTTACCGCAGTAGCGTTAGCAGAATGTGAACTGGGTGCACCATATTCTTTTGGAGAATATGTTTATCTGACACACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAACGATattttactacttaacccCGATCTCGTATGCCGTCTTCTGCTTGAAAAGGGG,514954,538200,23246,3250,19996,2.910944810021058,3,2.5744652107564923,2.529611098927845,88.45535885319212,82,124.95239402756576,0,6744,complex CNV
3029,125,9,1657,gap1_3,H05,Wildtype architecture,complex CNV,"ECM9, YKR051W, FOX2, DBP7, DID2",NA,FOX2:TATATGTGTACCTTGCTTAATAAATTAGCTGATAAGTCCTGAACCACCCAAAGTGCCACCTAGATCATTGACGACCACTTTTGCACCTCTGCTTGCGTAAGCTAGTGCATACACCTTACCTAAGCCCCCTCCAGCGCCCGTGATTACAACaactctatcttctgtc;DID2:AGAGACAGGATATATCTCGTATATATGCATCCAATGCTATAAGAAAGAAAAAGCATTGGATGCATATATACGAGATATATCTTCATTTTCATTAAGAGCACGTTTGAGCTTATTAGTTTCCTGTTTTTCTTCCTTTGAGGCTTTATTGGCttgcttttgtaattgttttgatgtaaactttagttggaaaagagtgttttcctcttttccaactaaagtttacatcaaaacctgtctcttatacacatctc;DBP7:TATAAGAGACAGCCCGTTAGATTTTTCTGGTGCCCGCTGCTACTTTGAACAACATTACCAAAGTTGACCGGAAGCGATGAAATCTTTGGTAATGTTGTTCAAAGTAGCAGCTAATGTTACAAGACGCAACTTTGGTGACGCTGCGGACAATAGTAATCCTCTGCAATAGTTGATCGGGCGCAACCGTTACT;GAP1:aaaggcaattatggccacaaagccaagatgGTATAGAATCTGGAATTTCTGGTGTTAATCCGCTCTTTCCTCATAAGGAAATCCCCTCTTATGATCTTGAGAAATGGGGGAATGTTGAGATAATTGCTGTCTCTTATACACATCTGACGCTGCCGACGACCGTCATCGTGTAGATCTCGGT,NA,448761,533424,84663,69443,15220,3.0825511901705034,3,2.282641388326659,2.690486474445027,164.46482914980714,153,195.09646405529568,0,9050,complex CNV
3030,125,9,1657,gap1_3,H05,Wildtype architecture,ODIRA,NA,DYN1,NA,CGATGAAGAGAAAGACCTTGAAGTGGTCGCTAAACTTTGTGCGCACGTAGTCTGCGGCTCGGACAATTTGCAGCTCGGTCCTGGGGTACGAATCCCACACCCTCTTCGTCAACAAAGTGAAGAAGAGGCTGTGGGATTCGTACCCCAGGAActgtctcttatac,515815,544820,29005,2389,26616,2.897697224893932,3,2.5112102554893454,2.477885856122443,80.91860320185157,73,116.15970836617714,0,6075,ODIRA one end
3031,125,9,1657,gap1_4,G06,Wildtype architecture,LTR NAHR,LTR11,LTR12,NA,GCCCGCAAGAGTCTACTAAGCAAAACATGATGTTGAAATATCATCTGTTTAGTAATATTCATATTGCTAGTATACTATCATATGCGGTGTAAGATGATGACATAAGTTATGAGAAGCTGTCATCGAAGTTAGAGGAAGCTGAAGTGCAAGGattgata,513528,521910,9382,5676,3706,2.6066232821867463,3,2.521132179831221,2.435910804874382,78.02719644983347,71,110.77821366326596,0,5894,LTR NAHR
3032,125,9,1657,gap1_4,G06,Wildtype architecture,ODIRA,LTR11,SHB17,aTTCCTATGTGCTCGAGTACAATTTCTAGTATATTCTGTGTATGTATATTATAGTCTTTATCATCAATGGCATCCCAACAATTATCTTAAAATTCACCCATTTGTCAAGATAATGGTTGGGATGCCATTGATGATAAAGACTATAATATACA,gctctttgctcgtcgctTAATGGTTTCAAAACCAAATCCACAnTTTGCCTGGCACGCAAACGTGGAGAGGTGAAGATATAAGTGATGTTGTCTGGATTCAAAAACTGATTATTGCGGAAAACACCTACACTTAATTGCAAGCAACAATGCCTTCGCTAACCCCCAGAT,513020,525115,12095,5184,6911,2.6551180989659033,3,2.5314975018179102,2.407656504324716,77.50772006693978,71,107.16772674794922,0,5486,ODIRA
3033,125,9,1657,gap1_4,G06,Wildtype architecture,ODIRA,DID2/CAF2,YKR041W,GCTTACGATTTACCAGTATCGTCCTTAGATTTCGATGGTAAATTAATCACTGTTGGCGCAAACGAGGGAGGGGTTAATGTTGACGACGAAAAGGAAGACAAACTTGCACAAAGACTAAGAGCATTGAGGGGCTGAAAAAACATGCTAACAGGTCATGCATTTgattccgaaaaTTAGTTCATCATTACG;gcttacgatttaccagtatcgtccttaGATTTCGATGGTAAATTAATCACTGTTGGCGCAAACGAGGGAGGGGTTAATGTTGACGACGAAAAGGAAGACAAACTTGCACAAAGACTAAGAGCATTGAGGGGCTGAAAAAACATGCTAACAGGTCATGCATTTTTAGTTCATCATTACG,NA,508200,520899,12699,10004,2695,2.540019135611367,3,2.4246756459198915,2.404671775331621,62.95857123087339,57,81.26762345740664,0,4749,ODIRA
3034,125,9,1657,gap1_4,G06,Wildtype architecture,ODIRA,LTR11,SHB17,ATGTGCTCGAGTACAATTTCTAGTATATTCTGTGTATGTATATTATAGTCTTTATCATCAATGGCATCCCAACAATTATCTTAAAATACACCCATTTGTCAAGATAATGGTTGGGATGCCATTGATGATAAAGACTATAATATACATACACagaatatactagaaattgtactcgagcacctgtctcttatac;ATGTGCTCGAGTACAATTTCTAGTATATTCTGTGTATGTATATTATAGTCTTTATCATCAATGGCATCCCAACAATTATCTTAAAATACACCCATTTGTCAAGATAATGGTTGGGATGCCATTGATGATAatataatAAGACTATAATATACATACACAGAATATACTAGAAAatcgtagtattaTTGTACTCGAGCACCTGTtccattttgaggaCTCTTATAC,gtatactggcctgacttggaccattcagtttgaccgtGTCTGACAATGATACATCTGGGGGTTAGCGnAGGCATTGTTGCTTGCAATTAAGTGTAGGTGTTTTCCGCAATAATCAGTTTTTGAATCCAGACAACATCACTTATATCTTCACCTCTCCACGTTTGCGTGCCAGGCAAACTGTGGATTTG,513021,524605,11584,5183,6401,2.474416080465749,2,2.3190644285751487,2.3172648757062584,58.06999568767792,51,85.34788231719504,0,5248,ODIRA
3035,125,9,1657,gap1_5,H07,Wildtype architecture,ODIRA,NA,MRS4,NA,CTAGGGTCGGCAGCGTCAGATGTGTATAAGAtGACAGTCCTGAAtGGTATATAAAAGAGCTAAAGTCTTGACTCATGCCTGAAATCTTGATTTTTCATTTTTTTTTTCTCGCTTTTGATAGCCAGCCCATCTATGGTGCTTACTAATGTATAGAGAGGATAcacgatcgggggtgtcaaagtagcgattcctgtgggtt;tatCCTCTCTATACATTAGTAAGCACCATAGATGGGCTGGCTATCAAAAGCGAGAAAAAAAAAATGAAAAATCAAGATTTCAGGCATGAGTCAAGACTTTAGCTCTTTTATATACCTTCAGGACTGTCTCTTATACACATCTGACGCTGCCGACcctag,514959,537394,22435,3245,19190,2.6574433648250597,3,2.528357902232184,2.4139785695569556,86.01786984,78,127.2991424133948,0,6271,ODIRA one end
3037,125,9,1657,gap1_5,H07,Wildtype architecture,ODIRA,NA,MRS4,NA,CtcttgCTCTCTATACATTAGTAAGCACCATAGATGGGCTGGCTATCAAAAGCGAGAAAAAAAAAATGAtcgggggtgtcAAAATCAAGATTTCAGGCATGAGTCAAGACTTTAGCTCTTTTATATACCTTCAGGATGTTCGTACCATGgcaaacatgcaCGTCGCAGGCCCTAGATCGG;CCTCTCTATACATTAGTAAGCACCATAGATGGGCTGGCTATCAAAAGCGAGAAAAAAAAAATGAAAAATCAAGATTTCAGGCATGAGTCAAGACTTTAGCTCTTTTATATACCTTCAGGATGTTCGTACCATGCGTCGCAGGCCCTAGATCgg,514954,537362,22408,3250,19158,2.6762220367323417,3,2.352538694243739,2.4426098974155375,140.31727253536113,130,162.12245098595622,0,7841,ODIRA one end
3039,125,9,2076,gap1_ltr_1,C04,LTR KO,ODIRA,upstream of DAL80,UIP5,TATGACGGCAGATAAACAATATCCCGCTCAGTAATACAAAATTACTACTGTCTCAGAAAGAATAACCAAGAGAAAATCGAAAAAACAGTAACTGTATCCAAATTCAAGCTGACGCTGGACTGTAATCAGCAAGTGTTGCTTAGTATATATctcttatacacatctgacgctgccgacgattaaccgagtgtagatctcggtggtcgccgtatcattaaaaaaattttttggggggA,gtataagcTTCCTGAAGATCGACGTGCAGTACGCAAAAGAGGGAAACTACTGGATTGAGTTATTTCAAACAACCGAAAATCTGTACTTGCCGAAAAACATGCACACGGGGCAAAGATACATTGGCCATTTAATGCGCTACAGCCAATGTATCTTTGCCC,506886,526279,19393,11318,8075,2.7912800642406848,3,2.4557988629014025,2.4983503822163886,86.41715542273045,80,129.8142570719916,0,6045,ODIRA
3040,125,9,2076,gap1_ltr_1,C04,LTR KO,ODIRA,DID2,YKR041W,GACTTCCTATACTTTCAAAGTAGCTCACATCTCATCAAACTGCTTTCACATTGATTCGTTTTCATTCTTATCATTTCTTTAGTGACACTTATTTTTACGCGAACGGGTAACACACTGCCATTTATCTGGTGCTGGAAAATTGCCCCTAAAGAAATtattggcttgcttttgtaattgttttgG,ATTTTAATGCGCGGGCCGTTCGACAGTATTGGCGCATGATTCCGATTAAATCCGCTGGTAGCAGTTTTGTTTCAAACTAATTCAGCCTCCTTACTCCCCATTTCCTTATTGAACTTATGATCTTGATATAAGCCCTGTCATTGATTGCAAATGCACAAATTCCGGAGATTGAACAGCCAACACAAAGATAGTATTTGGGACTTAGCGGGTTGAGAACGGTAATTATATCA,508091,522002,13911,10113,3798,2.9322582216539232,3,2.3514917035549208,2.5775327800773433,275.2109248088214,268,275.64314042087466,0,10867,ODIRA
3041,125,9,2076,gap1_ltr_1,C04,LTR KO,ODIRA,DID2,YKR051W,NA,gtgcATGGAAGCTACCCAAATTCGAAATATTTTTGAACGTTTTTTATAATATTTCAGTGACTTGGGTAGCTTCCATGCACTGCATATCAATGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACACATGTAAATCTCGTATGCCGTCTTCGG,508093,534817,26724,10111,16613,2.730107353346478,3,2.5710232446452648,2.5848674039577366,69.90959395185028,64,117.9871608123458,0,5801,ODIRA
3042,125,9,2076,gap1_ltr_1,C04,LTR KO,ODIRA,KAE1,TRK2,AAATATTTATATTTCGTCGAATTGGTACCTCTCTGTGGGACAGCTCAGAAGCAGATGTCTTCAAGTTTTTTTATTGTGTCGAAATGGGGAGAGAAATCACTAAATAAGactcataAATCAACCATTATCTGTGGCTGCAAGAGATTGATCGGTATGCAACCTCAACAGTGTTGAAGCTATTGGTAGGTAACAAGTGggggcccctctgcattcagttgtcatcgccgccagaacgtgc,CGCCTATACTTATTCATGGGTTTTTGGCCTTTGTTGCAACGTCATGGTCCTTCTTAGTTTAAAATTCTGTTTGGAGATATCCCTAATGCTGTCGAAGTACCTTTCAAACCAATACCTGTCTCTTATACACATCTGACGCTGnCGACGATTAACCGAtccattctgttatatccgtgcaagaacacggcgttcatcgatgtgctatttctggctgctggagcgtctGTGTAGATCTCGGTGGTCGCCGGAagcactaacgatttcaacCTG,512620,531581,18961,5584,13377,2.7403540857049125,3,2.6419840177736464,2.528225119286007,81.97687363024569,76,99.89610598615172,0,5296,ODIRA
3043,125,9,2076,gap1_ltr_3,C06,LTR KO,ODIRA,unresolved,upstream of YKR075C,NA,cccggtaaCTGTACTTTTTCTGCAGTCATCCAAGGGAAGACAAAAGAAGAAAGTACAGTTACCGGGTCTTAGCAAAAACAAACATATATATATATATCTCTCTCTTATACACATCTCCGAGCCCACGAGACAGGACCGCATCGCGTATGCCGTCTTCTG,514852,584265,69413,3352,66061,2.9023823792148193,3,2.6615458523510696,2.6493168546301664,95.24513824400294,89,131.04534377590565,0,6201,ODIRA one end
3044,125,9,2076,gap1_ltr_4,D07,LTR KO,ODIRA,DAL80,YKR041W,CTACATCCTTTCTTAATGTTGTGGGTGAGATTGTACTGAAGCTCTGGnGTGTAGTTCCACATCCAGCGTCAGCTTGAATTTGGATACAGTTACTGTTTTTTCGATTTTCTCTTGGTTATTCTTTCTGAGACAGTAGTAATTTTGTATTACTtgtctcttatacnca,aaacgaagtcatgaaagcgaaagcagcagtgaaagcgaggtagacgttttcgcctttgaccaggcaaaagGTATCAGCTCTAAGGTTGAAGCCGAAGAACGCTTTCATGACTTCGTTTCAAGCGGTCTCTTTCGCTCTCGGTTGTAACACACTTGTAGCCTGCTATGCTTTCACCGTACTCGAAAAGCGTAGCCTCATGACTAGTTGTACCAACGCCCTTT,506074,521000,14926,12130,2796,2.725468100640505,3,2.4563873234394475,2.5101111708820936,82.13579359025125,75,127.0947239135328,0,6277,ODIRA
3046,125,9,2076,gap1_ltr_4,D07,LTR KO,ODIRA,KAE1,DYN1,NA,atgaacggaagcgcgggcgaagggctctgtgtatgatctgaactcagggactagcttgAAAATCTCTTTCTCAAATTTATGAAATTTATTACAAAGCCATTTTCAAGCTAGTCCCTGAGTTCAGATCATACACAGAGCCCTTCGCCCGCGCTTCCGTTCATTTATATAACGAATGTAAAGCAAGATACAGTACTGGGCTTCAATCACAC,512425,544862,32437,5779,26658,2.7284954374091455,3,2.425506556602554,2.536513627451259,88.77238078193386,83,114.72406955571184,0,5803,ODIRA
3047,125,9,2076,gap1_ltr_4,D07,LTR KO,ODIRA,CAF4,PET10,GTACCGGTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGTTAAACAATGGTGCATGTTTACTTGGCACAGAAGCACCAATGATAGTCGCACAATGCCATCTTTTGTTCCTGTTGCTACTGCAGAGTTGTAACATTGGAGGGCTCCTATCAttggtgcttctgtgcctgtctcttatacacatctccgagccc;GGGCTCGGAGATGTGTATAAGAGACAGGCACAGAAGCACCAATGATAGGAGCCCTCCAATGTTACAACTCTGgtCAGTAGCAACAGGAACAAAAGATGGCATTGTGCGACTATCATTGGTGCTTCTGTGCCAAGTAAACATGCACCATTGTTTAACTGTCTCTTATACACATCTGACGCTGCCGACGACCGGTAC,ATCTCCTTCGATGCGGTAGAACCTTGCAAGTGCAATGGCTTGATCAGGAACTCCCTCAACAGAGTATTAGAAATGTTGGCGACGTAGTCGACGAAGAACCACACCAGCCAGATCCCTGGCGTGTTGGAATGTGATTTCCAATTGTACAGCAagccgtcgacaccctccttgaacaccaagaggttaactaactcgtctggtgaagcaaggtgttgctgctgggcaggaaggggccttcaagttggacgagttagtta,509094,528174,19080,9110,9970,2.817346762333866,3,2.5188448947192392,2.5192391131638403,109.69806573264218,102,144.5456172656955,0,6954,ODIRA
3048,125,9,2076,gap1_ltr_5,C08,LTR KO,ODIRA,DAL80,MET1,NA,CTGCAGATATAATACTGGCAGATAAACTGGTACCGCAAGCCATTTTAGATTTAATACCTCCAAAAACTGAAACCTTTAGCTAGTAATTCCTGTTGTGCTCGTTCTGCATTACCGGGAAATTTTTTGGCTATGAAGGCTGTCTCTTATACAggtatC,507409,575806,68397,10795,57602,2.607415484831561,3,2.4548372137244985,2.3702850577094186,62.96622284891351,56,99.08419201747648,0,5540,ODIRA
3049,125,9,2076,gap1_ltr_5,C08,LTR KO,ODIRA,unresolved,upstream of Lysine tRNA,NA,NA,515820,582095,66275,2384,63891,2.6058937187694897,3,2.3242431739920013,2.351378315028396,66.20172101984168,59,102.06779207293688,0,5715,ODIRA
3050,125,9,2076,gap1_ltr_5,C08,LTR KO,ODIRA,SPO14,SKG1,NA,ATTCTGTAATTTGTATAAATCCTTATCTTTATCTGTTATTGCAGACCTGCTATCCTTTACCGAGTGGTAAGCATCAATTCCTTCGTTATCTTTATCAAAATTGTTTGGTAACTGTGATTGAGCCGCACTTTTGGGTGTTGCAAACACATCCtctataacatcggtaaataagcgcgatgccctagaggatgctgtctcttatacacatctccgagcc,504669,641383,136714,13535,123179,2.4328290771230554,2,2.295144307126561,2.2603616006860694,66.60413827224389,58,112.8854642720137,0,6139,ODIRA
3052,125,9,2076,gap1_ltr_6,B09,LTR KO,ODIRA,in between DAL80 and DID2,UTH1,taatcaaactGCTTTCACATTGATTCGTTTTCATTCTTATCATTTCTTTAGTGACACTTATTTTTACGCGAACGGGTAACACACTGCCATTTATCTGGTGCTGGAAaattgcccctaaagCTGTCTCTTATACACATCTcCGAGCCCACGAGACCACGAGTTATCTCGTATGCCGT;TAATCAAACTGCTTTCACATTGATTCGTTTTCATTCTTATCATTTCTTTAGTGACACTTATTTTTACGCGAACGGGTAACACACTGCCATTTATCTGGTGCTGGAAAATTGCCCCTAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACGAGTTATCTCGTATGCCGTcaaa,TTTTAATGATACGGCGACCACCGAGATCTACACGCATCGTTTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGACTTTGTCCTCGACTGCCGCCGCCGCTACTACCTCTGCCGCCGCCGAGGTAGCGGTGGTGGCAGCTGGAATAACAACagcgccgtctgcgttgacgtactgagaaacggtgacaacggcacgcttgtcgtagtggtggtggttgtcactatggtggac,508184,522625,14441,10020,4421,2.7454227576048917,3,2.6952893931330593,2.5383835150935203,50.15776026255225,46,75.76403193777192,0,4012,ODIRA
3053,125,9,2076,gap1_ltr_6,B09,LTR KO,ODIRA,DAL80,TRZ1,gtgttcacattgttgttattcagctttttcctatttcttgacttaatggtgtccgTCTTCAAGCTGATAGGCCTTGGTTCCCCGTGCAACTTCAGGAAGAGGACCACCCCACGTGCCAGAATTGTTTCACTGTCAAAACGCCCCTATGGAGAAGAGATGAACACGGTACTGTTCTCTGCTGTCTCTTATACACATCTCCGAGCCCA,CTTTTCCCCATGTGCAGACTGGACTAGCAGCAATGGGTGCTTTGTATCCGATGTAGGATGGGGAAAAGTATTTCTTCGGTAAAATTGGTGAAGGATCCCAAAGGAGTCTGACTGAAAATAAGATCAGGATATCCAAATTGAAGGATATTTTgtatgccgtcttctgcttgaa,506566,591807,85241,11638,73603,2.773542467780251,3,2.4048412882472556,2.530162202476075,53.905673192238694,49,87.48902094855002,0,4603,ODIRA
3055,125,9,2076,gap1_ltr_6,B09,LTR KO,complex CNV,DAL80,unresolved,NA,NA,514982,616108,101126,3222,97904,2.533134617827204,3,2.610494002989233,2.402842335191614,43.82162713594302,39,68.53137238238547,0,4182,complex CNV
3056,125,9,2076,gap1_ltr_7,H09,LTR KO,ODIRA,CEN11,TEL11,NA,NA,442401,669931,227530,75803,151727,2.682019515102161,3,2.460757394,2.391065102876191,238.79495757286185,217,299.0385773674399,0,12111,ODIRA one end
3057,125,9,2076,gap1_ltr_7,H09,LTR KO,ODIRA,SPC34,PRP16,AGATCTACACCACGTCAGTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAATCCGTTTCACGTAGAGACGGCAAGGAGGGAGTATTCGACTATGTTATTAAACGAGATACGGATTGTTTCTCAGGGTTGACTTTGAACAGAAGATACGCctcgtcgtggttacagtcctgtattagt,gatacattcaaaGAAGATATGTACTTACAGACAATACCTGAGATCCAAAGAACGAATTTGTCAAACACCCTTTTACTGCTAAAATCTCTGGACGTTACTGACGAATTGAGTAAGTTGCCGTTCATTGATTTTAGCAGTAAAAGGGTGTTTGAAAAATTCGTTC,508093,604000,95907,10111,85796,2.7774089879622736,3,2.653936308058093,2.5253888965605564,111.26810576924466,103,163.58432374749322,0,7553,ODIRA
3059,125,9,2076,gap1_ltr_7,H09,LTR KO,ODIRA,CAF4,DYN1,ATGTTACAACTCTGTATTAGCAACAGGAACAAAAGATGGCATTGTGCGACTATGGGATCTAAGAGTTGGCAAACCGGTGAGATTACTAGAAGGCCATACCGATGGAATTACAAGTTTGAAGTTTGATTCCGAAAAATTGGTAACAGGCTCGATGGACAATAGCGTAAGGATTTGGGATTTGAGGACAAGCTCAATTCTTGACGTGATTGCTTACGATTTACCATCGAAATCTAAGGACGATACTGGTAAATcgtaagcaatcacgtcaagaattgagcctgtctcttatacacatctccgagcccacgagacccgtta,ggacaatatcatcccattcttctatcatgcctgctgatttttcatataaacccaaaaaagaaccatactctagctgaaataaatctgaaagattACTTAGAATTGCATCCATGACTTCTTGTGAAATTTTGTCCATCAGCACAACAAATCTTTGAACTGGATAACCTGAATATCTGAACTTCTTCAAAGAAGATGCTAAAACAGGAAATAGTTCCTGCAAGTCCTCAAGATTGCTTGCCTGGCGAACCTCATCGATAGGGATTGACGAAGTTGAGTTTTGGTCGAATTTCTACGAAGTACTGAAGTCGTTAATTGAACAAACACAAAGCCAAGAATTTCAGGTGTGTCTATCCGTTC,509289,550544,41255,8915,32340,2.768734978646082,3,2.776646820543254,2.5720917186917136,109.80202747877551,102,119.2792405447245,0,6145,ODIRA
3060,125,9,2076,gap1_ltr_8,E10,LTR KO,ODIRA,CAF4,SRP40,GAAAAATACGTTCAATTGCCGGATATTAATACTGGTTTTGTGAATAAAACGTACTCTAGAATTGACCTAACACATTTACTTGAGGATGTAGAAACTAACGTGGAAAATCTGTCAATCAATAAAACGTTAGAGATGGATGAGTTGACCATATtttccacgttagtttctacatcctcaagtactgtctcttatacacatctgacg,TTCCAATTCAGAGCTAGAACCAGAGTCTGATTCAAGTTCCGACGAATCTACATCTTCTGATTCCTCCGATTCGGATTCCGACTCAGACTCTGGTTCTAGCTCTGAATTGGAAACAAAAGAAGCAACTGCAGACGAATCCAAGGCCGAAGAAacgcctgcctcatctaacgaatcaactccatctgcttccagttcctgtctcttatacac,511453,615305,103852,6751,97101,2.774477182887898,3,2.300919044874868,2.4824360103428784,107.6236012800644,97,146.61449074815056,0,7033,ODIRA
3061,125,9,2076,gap1_ltr_8,E10,LTR KO,ODIRA,KAE1,NAP1,AGCTATGGCTCACGTTAACTCCAATCAAGTTTTGATCGTAGGCGGTGTTGGTTGTAACGTGAGCCATAGCTCTTTCTGTTATTTCAACTAGCATGGCGAATAGGTTCTCTTGCAGAGAGTAGCAACTGTCTCTTATACACATCTGACGCTGgcccgttgtctt,ggaatTCAGATGTGTATAAGttAGACAGCGATGGAGTAGTCTAAAGCTAGACGTTCCTCGAGGTCTTCCTCCAACTCCTCGTCTTGGTCTTCGTTTTGGATCTTGGGAGGGTCGAAGAAGAAGCGGACGAGGACGAAGACGAAGAAGAAGATGATGAT,512166,528651,16485,6038,10447,2.673235989521454,3,2.5251482954974143,2.409511941029959,65.33883075034342,60,75.53662784602992,0,4201,ODIRA
3062,125,9,2076,gap1_ltr_8,E10,LTR KO,ODIRA,CAF4,YKR045C,TTTGtgcagactctgcaacaactttcagaatacttgctcatttagatgagcagcgatacccgctacccaacggtgccgcTGAAAAGAATTTACCTTCTTTATTTGAAGGATTCAAAGCTACCGTTTCCATCATTCAACAGAGACTGTTGTTAGACAATGTAGACGGGGCCACGAATAGTGATAAGGAAAAATACGTTCAATTGCCGGATATTAATACTGGTTTTGTGAATAGATTTTCCACGTTAGTTTCTACATCCTCAAGTAAATGTG,AACTCAGCACGCTTAACTCTTGTGGGGCCAGCCCTAGTGCCGCGTCTTGGTTTACTGCTCGAGACCGATGCGTTAGTTGGATCCGGATGGAACAACCATCAGTTCGTCGTTGCGACCATTGGTgctgctgctgtcttactttgccTGATCGAAATTCGTTGCATTCGAGCGAAcggtctcTC;aaCTCAGCACGCTTAACTCTTGTGGGGCCAGCCCTAGTGCCGCGTCTTGGTTTACTGCTCGAGACCGATGCGTTAGTTGGATCCGGATGGAACAACCATCAGTTCGTCGTTGCGACCATTGGTTGATCGAAATTCGTTGCATTCGAGCGAATC,510109,527187,17078,8095,8983,2.711589278763677,3,2.3872108647987065,2.469311164236861,66.70424526454099,61,94.21448010978216,0,4987,ODIRA
3063,125,9,2076,gap1_ltr_8,E10,LTR KO,ODIRA,DAL80 and CAF4,UTH1,GATGTGTATAAGAGACAGCAAATAGATAAGAAAAATTACAATATGTTGATTACTGGAAGTGGAACTACACTCCAGAGCTTCAGTACAATCTCACCCACAACATTAAGAAAGGtctcttATGTAGCGTTCATGACAGTATAAATATAACAGGATATAG,GGGCTCGGAGATGTGTATAAGAGACAGGCCCAATACTACGTTAACAACGCTGGTGTCTCTGTGGAATGATGGACAAgGTAAGTGATACCATCAGTGTAACCAGCACCCAAGACAACTGGGGCCCAGTTACCGACACCGGAACCCTCAGTACCCCAGATACAACCATCTTCCACCTaatcaaacaaGTCTCTTAT;GGGCTCGGAGATGTGTATAAGAGACAGGCCCAATACTACGTTAACAACGCTGGTGTCTCTGTGGAATGATGGACAAGTAAGTGATACCATCAGTGTAACCAGCACCCAAGACAACTGGGGCCCAGTTACCGACACCGGAACCCTCAGTACCccagatacaaccatcttccacctgtctcttat,508715,523831,15116,9489,5627,2.625068052913296,3,2.3697050625266844,2.423120913,73.61813936427934,66,116.7806855603351,0,6268,ODIRA
3064,125,9,2150,gap1_ars_1,E04,ARS KO,ODIRA,CAF4,MRS4,NA,NA,510681,536844,26163,7523,18640,2.9022098893762993,3,2.501018564939926,2.5997039661620613,83.36854394986703,78,101.87329813760572,0,5194,ODIRA
3068,125,9,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513433,520247,7814,5771,2043,2.105323602885319,2,1.6234479604936396,1.7474982837206814,74.49750176008526,69,98.01556012731974,0,5435,LTR NAHR
3069,125,9,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513840,519942,6102,4364,1738,2.138247978488722,2,1.7224302787799883,1.920962644033908,71.5629568,68,101.13089532002076,0,4806,LTR NAHR
3070,125,9,2150,gap1_ars_3,E06,ARS KO,ODIRA,CAF4,upstream of Lysine tRNA,NA,NA,508987,582244,73257,9217,64040,2.9969574813735296,3,2.549186774165827,2.613288906404521,98.47152737,90,136.15054706460444,0,6985,ODIRA
3071,125,9,2150,gap1_ars_3,E06,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513825,520247,6422,4379,2043,2.1803781029064964,2,1.7757786787824326,1.8889022774494504,89.87669334420802,85,129.02796846785589,0,6443,LTR NAHR
3072,125,9,2150,gap1_ars_4,F07,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513715,520247,6532,4489,2043,4.0833458705548535,4,3.306614254542673,3.548619691057881,112.24617785566716,109,123.02775164406452,0,5409,LTR NAHR
3074,125,9,2150,gap1_ars_4,F07,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,512669,520247,7578,5535,2043,2.933757481474133,3,2.6605106836206125,2.621406567390191,95.70943835379435,92,97.15418624167596,0,4586,LTR NAHR
3075,125,9,2150,gap1_ars_4,F07,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513558,520247,6689,4646,2043,3.573655682249671,4,3.213670474,3.2027803173025804,301.1954165987214,290,230.12851408215977,0,9528,LTR NAHR
3076,125,9,2150,gap1_ars_6,D09,ARS KO,complex CNV,CAF4,UTH1 and DRE2,NA,NA,510457,578048,67591,7747,59844,3.0794174972768387,3,2.6137712881744233,2.727582382740479,101.85083332498266,96,153.63192807162443,0,6986,complex CNV
3077,125,9,2150,gap1_ars_6,D09,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513707,520247,6540,4497,2043,3.865493665166396,4,3.326109947441893,3.4474896587846264,97.50627671857065,91,143.9078431516431,0,6934,LTR NAHR
3079,125,9,2150,gap1_ars_6,D09,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513694,520247,6553,4510,2043,3.532711835,4,3.278027839991343,3.272696439912579,92.82633433324789,85,135.51674904914495,0,6929,LTR NAHR
3080,125,9,2150,gap1_ars_7,A10,ARS KO,ODIRA,KAE1,DYN1,NA,NA,512399,545266,32867,5805,27062,2.9481522946426537,3,2.702314571892889,2.660352148008053,79.89844759,74,123.40603849076564,0,5989,ODIRA
3083,125,9,2150,gap1_ars_7,A10,ARS KO,LTR NAHR,LTR 460kb,LTR12,NA,NA,459870,520381,56511,55334,1177,2.207280630387353,2,1.642283577005571,1.9452519016795116,89.45770715150613,84,120.3470254022825,0,6026,LTR NAHR
3084,125,9,2150,gap1_ars_8,G10,ARS KO,ODIRA,LTR11,TIF1,NA,NA,513587,558723,45136,4617,40519,2.84891915,3,2.5092908225175137,2.6112845317117057,76.34445184191325,71,84.67079095,0,4623,ODIRA
3087,125,9,2150,gap1_ars_8,G10,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513666,520247,6581,4538,2043,3.749528160545581,4,3.3388455494019436,3.362894324451798,99.86707091132104,93,136.90295406073506,0,6236,LTR NAHR
3088,125,9,2071,gap1_all_1,A04,LTR and ARS KO,transposon-mediated,LTR 460kb,new LTR,NA,AACGGGCTCGGagtcgatttAGATGTGTATAAGTGATATAATTACCGTTCTAGACAGGCTAAGTCCCAAATACTATCTTTGTGTTGGCTGTTCAATCTCCGGAATTTGTGCATTTGCAATCTGAGAAATATGTGAATGTTGAGATAATTGTTGGGATTCCATTGTTGATAAtgttAGGCTATAAT;aacGGGCTCGGAGATGTGTATAAGtgatataattaccgttctAGACAGGCTAAGTCCCAAATACTATCTTTGTGTTGGCTGTTCAATCTCCGGAATTTGTGCATTTGCAATCTGAGAAATATGTGAATGTTGAGATAATTGTTGGGATTCCATTGTTGATAAAGGCTATAAT,460209,520240,60031,57995,2036,2.806915163176249,3,2.5284743474311053,2.4994799275155275,62.02934573700848,55,106.15057959105484,0,5695,transposon-mediated
3090,125,9,2071,gap1_all_1,A04,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,514815,520246,5431,3389,2042,3.0986668742490133,3,3.183120690089601,2.5542243519256105,23.135896698394475,21,35.191024377884695,0,2207,transposon-mediated
3092,125,9,2071,gap1_all_4,B07,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,513974,520246,6272,4230,2042,2.016091272087765,2,1.9588703659794653,1.811002228914577,61.64142424727544,57,86.19279353113035,0,4535,transposon-mediated
3093,125,9,2071,gap1_all_4,B07,LTR and ARS KO,ODIRA,VSP1,upstream of BAS1,NA,NA,441374,638463,197089,76830,120259,2.624547730570447,3,2.672583899019442,2.3855571817190713,37.03288818497446,33,58.58811096166601,0,3330,ODIRA
3094,125,9,2071,gap1_all_4,B07,LTR and ARS KO,ODIRA,upsteam of PAP1,RHO4,GACCACCGAGATCTACACGCATCGTTTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAAATTATTTAGCTAGTTTAGTGTCTTTAAACTTTTGCTAAAACGTTTCACTGTGAGCAAGTCTTTAAACGGTCTTTTTTGAATCAAAAGAGGctgtctcttatacacatctccgagcccacgagacaggacagcatctcgtatgccgtctt,NA,443732,551559,107827,74472,33355,2.7861158994632578,3,2.4679135718793273,2.4523434625257017,40.193975652067984,36,67.70594763285476,0,3754,ODIRA
3096,125,9,2071,gap1_all_5,A08,LTR and ARS KO,ODIRA,SPO14,upstream of BAS1,tcagagagttcgttaaagcaatGGATGAGTTCAATTATCAAAATGTCTACCTCAACACCTTGGTCGAAACCAAATAGATTTGGTAGTTTCGCACCTGTAAGAACAAATTCGTTTTGCAAATAATTTTCAGTTTCCTTTCACTGTTTTCTAGGGCTGTCTCTTATACACATCTC,,505163,637561,132398,13041,119357,2.728409717573086,3,2.5295218164176108,2.486608058369711,81.98362120933714,74,113.41280994956438,0,6190,ODIRA
3097,125,9,2071,gap1_all_5,A08,LTR and ARS KO,transposon-mediated,new LTR,new LTR,NA,NA,514554,520246,5692,3650,2042,2.912719033637399,3,2.786514634265071,2.4949595576713937,48.81850292,45,62.789558874470515,0,3717,transposon-mediated
3098,125,9,2071,gap1_all_5,A08,LTR and ARS KO,complex CNV,LTR 490kb,UTH1,gcttattctttatcttgttacgttatcaatgcttgcatttcagcttctattataTTTAATAACCGTTTCTCATTCTTAATGTCATCTTCTTACACTGTGTATGAGAACATACTGCTAATTTGTGTGCTAGTGCATAGATGGTAGTTAATTCTTATTCAGACAAAAAATACTTATCTAACATGTTTAACAACAGATCAGATACCTG,ggtctaggcggctgggcttccatcatgGACATGAACGGTAACACCGCCACCTAGACCTAACCAGTCCAAGGAGACAGCACCTTGTCCGGATGGGAAATCAGAACAGGAAATGGTACCATCTTCAAAATCTCCAGAACCAACAGAGGAAGAAGAGGAAGAGGAGGAAGAGGAAGAGGAG,490956,643924,152968,27248,125720,5.500025985609364,6,5.161396576254474,4.742637357775146,87.53644756917751,80,132.56730077620026,0,6467,complex CNV
3099,125,9,2071,gap1_all_5,A08,LTR and ARS KO,complex CNV,VSP1,TEL11,GTTCTTAAAGGATGCTACTATTCCTACGAATGAACTGATTAGAAATCGCTTCTCTTAGAGCAGGATACCTTGAGTACTTTGGTTGTGAAATAATCTGTTTTAGCATACGAACAAGTTCATCAAACACCAGAGTAACTAAACGTAGAGATGG,,443748,669910,226162,74456,151706,3.690259318483597,4,3.370992666469939,3.2990048086617603,84.48773389916626,77,135.7782166613323,0,6612,complex CNV
3100,125,9,2071,gap1_all_6,G08,LTR and ARS KO,ODIRA,CEN11,TEL11,NA,NA,438421,665501,227080,79783,147297,2.7869809692535306,3,2.2116254794130508,2.454387649,83.57762225333727,75,130.02121221150995,0,6274,ODIRA
3101,125,9,2071,gap1_all_6,G08,LTR and ARS KO,ODIRA,SPO14,FLO10,CTTTTGAACACGTTCTACGAGATGATGCAGAATCTTTATTAGATCAAAATTTTCCTGGTAAGGATTATTCAAATGCCAGAATTGCTGATGTTCATGATTTAGATAAACCATTCGAATCAATGTATGATAGAAAAGTCATTCCGAGGATGCCatggcatgatgtgcaaatgatgacttttctatcatacattgattcgaatctgtctcttatacacatctgacgctgccgacgattgcaggtgtgtagatct,gtttctGCTTCTGAGGCTGTCAGTAGCAAAAGTGTCGCTATTTTCAGACGCGTTGCTTGTAGTGGTTGTATGTGTTTCAATAGAAGTAGTCCCAGAAGTTGGAACAAAATTGTTGTTTCTGCTTATGGATTTTGTCTCAGCAGCCTCTGAAACGAAT,505604,651712,146108,12600,133508,2.8809193049936632,3,2.5267891208716895,2.5546247190811715,79.06848997751615,73,122.46011279287946,0,5854,ODIRA
3102,125,9,2071,gap1_all_6,G08,LTR and ARS KO,ODIRA,CEN11,TEL11,NA,NA,459862,669931,210069,58342,151727,1.844896153320844,2,1.6450385696248082,1.6755175489673793,76.88220835,70,124.21238570418528,0,6132,ODIRA
3103,125,9,2071,gap1_all_6,G08,LTR and ARS KO,complex CNV,YKR023W,TEL11 or unresolved,CGGCAGCGTCAGATGTGTATAAGAGAnCGCTGGATGCCTTGTACCTTGACAATTACAATTTTTAGACGAAGCAATCAAGATGCTAGAGCTTCGAGATAGCGGTTCTTCTAAAAATTGTAATTGTCAAGGTACAAGGCATCCAGTTTTCGACatcgcgccaaactgtcttcactgtggtaaagtggt,,485986,669931,183945,32218,151727,2.894355015032842,3,2.479150897854224,2.534494106648122,76.61832777,68,121.1541265,0,6471,complex CNV
3105,125,9,2071,gap1_all_7,F09,LTR and ARS KO,ODIRA,unresolved,RHO4,NA,TCTCTATTTCCGGAACGACAAGAGAAAGAAAAAACAAGTGTAGGATAATGGAAGACTAATGATGAAGATTATTCTGTTGCCCAGTCTGTACGCACTTACAACATTTGAAAAGTGGCAAGAATGGGCAACAGAATAATCTTCATCATTATTCttacattataatacacttgttttttcttaatcttttcgttccggaaatagagacgctggtatctccagtagaagaatcgata,458933,552461,93528,59271,34257,2.8833498863159264,3,2.600032378570224,2.489908232,31.729033041894933,29,57.64910396655381,0,3100,ODIRA one end
3106,125,9,2071,gap1_all_7,F09,LTR and ARS KO,ODIRA,SPO14,upstream of YSR3,aggtatcaaaanttttattgtgatttataggaatgtggggaatattgttgggacagataGTCTTTGGACCAAGCATTCTATGCTAAATTTACATCCAAATATACATATCATAAGGTCTCCCAATCAATAACGACAAACTTCTCGTGGTGTGCCCAAAAATATGTATTTTGTAGCCATTGATTGGGAGCTGTCTCTTATACACATCTGACG,caagaaagggtgccaaaataccgaaaagagacacgatcgggggtgtcaaagtagcgattcctgtgggttaaaagagggtgaaccacggcaaacatgcatgtgtaaaacCCAAAACGCCGATCTAGGGCCTGCGACGCATGGTACGAACAGTCCTGAAGGTATATAAAAGAGCTAAAGTCTTGACTCATGCCTGAAATCTTGATTTTTCATTGTTATATCCTCTCGCTTTTGATAGCCAGCCCATCTATGGTGCTTACTAATGT,503987,537372,33385,14217,19168,2.865328175,3,2.4152542109117694,2.575698617509938,69.04338326886948,64,99.50651552066326,0,5033,ODIRA
3107,125,9,2071,gap1_all_7,F09,LTR and ARS KO,transposon-mediated,LTR 490kb,new LTR,NA,gctgtattccccgtgggagattctccaagtgcggaaggtttcttcgaagcttatctatccttcccacttgttatggttatgtacatcggacacaagatctataagaggaattggaaGCTTTTCATCCCAGCAGAAAAGATGGACATTGATACGGGTAGAAGAGAAGTCGATTTAGATTTGTTGAAACAAGAAATTGCAGAAGAAAAGGCAATTATGGCCACAAAGCCAAGATGGTATAGAATCTGGAATTTCTGGTGTTAAGATCTTGATATTGTTGGAATAAAAATCCACTATCGTCTAT,491118,520246,29128,27086,2042,3.268450666344887,3,2.712103221297607,2.8563118863776196,91.41469209,85,131.24047464770842,0,6303,transposon-mediated
3108,125,9,2071,gap1_all_8,C10,LTR and ARS KO,ODIRA,VSP1,upstream of SRL3,AAaattggcagctttggaatccTTACATCCTCGCCAAGTCGCTGTTGACCCAAAGACaatGGGTAAACCATTACCAACCCAACCATCGTCTAGTAAGGCGCCAGTTATGGAAGAGAAATCAGGATTTTTTGGTGGGTTCTTCTCCACTAAAAACAAGAAGAAATTGGCAGCTTT,GCTAAAAAGGGAACAGGAGCCTAAGAATAGAGAATAAGGAAATTTATTTAAGGAAAGGCTAAGCAATGAAATGTTTCGTTATTCTCTATTCTAAGGCTCCTGTTCCCTTTTTAGCTTTTAGCCTTTAATGCACCGGTACGAGAACTGTCTCttatacacatctgacgctg,443800,612879,169079,74404,94675,2.9363448541642785,3,2.3377831343258215,2.574889369,64.77068061561128,58,116.66083242403175,0,5949,ODIRA
3109,125,9,2071,gap1_all_8,C10,LTR and ARS KO,complex CNV,"FOX2, DBP7",MSA2,GAATGATCGTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGCGATATTCCCATCAACTCCGAAAAATTTCCCAAGACCACCTCCTGCACCCGTAACTACTACGACTTTGTTGCAAAGCGACTTGATTTTCACTGAGCCTTGTTatacacatctgacgctgccgacgatgtgattggtgtagatctcggtCATTGGG;caacaaaGCAAAAAAATTACCTCCCAATGACCAAGGCTCAGTGAAAATCAAGTCGCGTTGCAACCACGTCGTAGTAGTTACGGGTGCAGGAGGTGGGATTGGGAAATTTTTAGGAGTTGATGGGAATATCGTGAACAATTTTAAGCTGTCTCTTATACatgtgtggg,NA,453972,586684,132712,64232,68480,4.179819962423486,4,2.994151941008094,3.5229170971807298,64.7040017,59,105.8993365066293,0,5215,complex CNV
3110,125,9,2071,gap1_all_8,C10,LTR and ARS KO,transposon-mediated,LTR 490kb,new LTR,NA,NA,491106,520246,29140,27098,2042,4.119043795567484,4,2.9455962959860833,3.4981757742170836,76.69724045340737,70,119.39134142555028,0,6372,transposon-mediated
3111,125,9,2071,gap1_all_8,C10,LTR and ARS KO,complex CNV,VSP1,upstream of SRL3,NA,NA,440800,615374,174574,77404,97170,3.0847089555425113,3,2.3975571372493594,2.609891766994245,113.5849300947494,104,172.57454399003873,0,8015,complex CNV
3112,79,6,1657,gap1_3,H05,Wildtype architecture,ODIRA,GMH1,VBA5,AACCTTtggctcgatttgaAATTATAAATCGACCAAAGAATAGAACTGAGTGAAAATAAGTCTATTTGGAAGATGAAAAAGGAAGGATCATCTCTCGCCCACTGAGTTTCCATCCAAGAAAAGCTTATAGATCAATATATTATCATCGACAGACGCTGCCAAAAATCATCATCGTGTAGATCTCGGTG;AACCTTAATTATAAATCGACCAAAGAATAGAACTGAGTGAAAATAAGTCTATTTGGAAGATGAAAAAGGAAGGATCATCTCTCGCCCACTGAGTTTCCATCCAAGAAAAGCTTATAGATCAATATATTATCATCGACAGACGctgccAAAAATCAtcatcgtgtagatctcggtG,NA,501688,661297,159609,16516,143093,2.9188519635089745,3,2.4096437155677326,2.612709301295333,129.14749185093655,120,175.65531963938804,0,7893,ODIRA
3113,79,6,2150,gap1_ars_8,G10,ARS KO,LTR NAHR,LTR11,LTR12,NA,NA,513820,520247,6427,4384,2043,2.980607932306224,3,2.4441099822342194,2.714608039356074,168.59134449788905,161,208.23878511969735,0,8520,LTR NAHR
3114,125,9,1657,gap1_1,H03,Wildtype architecture,ODIRA,LTR11,TRK2,cgtcatattccacgacacgcttgtcctttaaatcacacttgttacctaccaatagcttcaacactgttgaggttgcataccgatcaatctcttgcagccacacgaggtattttttgattaCTTGACCCAGAGCGAGGTGTAAATGATGTATTTCACACGGATGGAACGCCCGCAAGAGTCTACTAAGCAAAACATGATGTTGAAATATCATCTGTTTAGTAATATTCAAAACAGATGATATTTCAACATCATGTTTTGCTTAGGAAGAGGACATAAGGTTGAAAAATAGTCATCAATCCTTGCATTTAGACTCT,CAAGTGACAAACTGGAACAAATTGATCGTTTACAAGATATGAAAGCTAAGGGTAAGTTGTTAGCCAAAGTTGGTGAGGATCCAATGACTACTTACGTCAAAAAGAGATCCCCCAAAACTTTGTTGCTATTTTTTTCAGTTTGTGGGATCTCTTTTTGACGTAAGTAGTCATTGccatgctaataagaggaagaaatagaGATCC,513772,533756,19984,4432,15552,2.9229988718219615,3,2.4837900926856173,2.58034918,95.14354599753658,87,137.83813623678296,0,7379,ODIRA
3115,125,9,1657,gap1_3,H05,Wildtype architecture,ODIRA,NA,YSR3,NA,ctctaccaaaaaCCAGGGTTAAGTAGTAAAATATCACCAGACTCAGTAAAAGAAGCTTTGTTGGCCATACCAGTGTGTCAGATAAACATATTCTCCAAAAGAATATGGTGCACCCAGTTCACATTCTGCTAACGCTACTGCGGTAAGTCTATTATTCTTTTG,513861,538200,24339,4343,19996,2.8289175197009975,3,2.484871287103019,2.530696523267863,64.56028112000472,59,81.65680634448448,0,4801,ODIRA one end
3116,125,9,2076,gap1_ltr_4,D07,LTR KO,ODIRA,CAF4,YKR041W,CCAACTGAGCGGATCCACCATGGGTCTGTCTCCTGTTAAAGCATGTAGCTTCATGTTTCTCACATAAACTTTCCTCATCGTAATGGAAAAAAAAAATAGTCATAAAAAAAAAACTAACCATGAATGACATATAGAGATACTCTTTTTTACTctcgctctgtctctta,gccttgatggatgcaaacagactagacttgattcACAGCGTnAGAATCCGGTGGCACCCGGACAnACATCGTTATCATAAGTCCAAAGTCACAAAACTGTTTGnATCCATCAAGGCACTCCTCnTTGTGTAAATTTGTTCTACGCTTTTGTCATCAATCATATCTAAACTCACAGCCGCTAGGGT;cttttcgagtacggtgaaACCCTAGCGGCTGTGAGTTTAGATATGATTGATGACAAAAgagaccGCGTAGAACAAATTTACACAAnGAGGAGTGCCTTGATGGATnCAAACAGTTTTGTGACTTTGGACTTATGATAACGATGTnTGTCCGGGTGCCACCGGATTCTnACGCTGTGAATCAAGTCTAGTCTGTTTGCATCCATCAAGGC,510670,522195,11525,7534,3991,2.800453088352379,3,2.7571621036506575,2.550559674293978,96.52153664094875,89,137.82667830969638,0,6569,ODIRA