Note: Report input files
This report has been generated using the below files, if you are missing any samples please add the summary statistics CSV into the./analysis/directory and re-run this script.Files:
## [1] "analysis/CONCOCT_mag_qual_statistics.csv" ## [2] "analysis/DAS_tool_mag_qual_statistics.csv" ## [3] "analysis/BinSanity_mag_qual_statistics.csv" ## [4] "analysis/MetaWRAP_mag_qual_statistics.csv" ## [5] "analysis/MetaBAT2_mag_qual_statistics.csv"
Table 1: Overall MAG quality of CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2 and total number of MAGs generated by each method.
Figure 1: Total number of bases and contigs binned
for CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2
Figure 2: Distribution of the completeness and
contamination of CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2.
Figure 3: Distribution of the the N50 lengths (bp) of the bins generated by CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2.
Figure 4: Distribution of the the length (bp) of the bins generated by CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2.
Figure 5: Distribution of the the number of unique tRNA sequences (/20) extracted in the bins generated by CONCOCT, DAS_tool, BinSanity, MetaWRAP, MetaBAT2.