QuantQC for pSCoPE data
Jan 2024
Results
LC/MS Performance Statistics
IDs and intensities
Retention time drift
Single Cell Statistics
Negative control vs real cell statistics
Carrier Statistics
Protein and peptide numbers per cell
Data completness based on filtering (uses intersected subset of proteins from channel qval filtered data)
Correlations between peptides mapping to protein compared to variance
PCA and batch effects checks
Additional dimensionality reduction and clustering
Viz proteins of interest
Advanced Peptide mapping to a Protein Correlations
CellenONE_info
Cell type positions across slide
Label position across slide
