Supporting information for Fouts et al. (2002) Proc. Natl. Acad. Sci. USA 99 (4), 2275–2280. (10.1073/pnas.032514099)
Table 3.
Nucleotide sequences of Hrp promoter regions in the hidden Markov model training setavr gene | P. s. pathovar | Race or strain | Hrp box | Accession no. |
avrD | tomato | PT23 | TGGAACCAAATCCGTCCCAAAGGCCACACAGAG | J03681 |
avrD | glycinia |
| TGGAACCAAATCCGTCCCAAAGGCCACACATTT | J03682 |
avrD | phaseolicola | 3121 | TGGAACCAAATCCGTCCCAAAGGCCACACAGAG | L11336 |
avrA | glycinia | Race 6 | TGAAACCGAAACGGCGTTGCTTGCCACACAGCA | M15194 |
avrB | glycinia | Race 4 | TGGAACCTAATTCAGGGTAAATGCCACACAGCT | M21965 |
avrPto | tomato | DC3000 | TGGAACCGATCCGCTCCCTATGACCACTCAAGT | L20425 |
avrRpt2 | tomato | JL1065 | GGGAACCCATTCATTGTTTGGAACCACCAACGG | Z21715 |
avrPpiB.R3 | pisi | 870A | GGGAACCACATCATGGGTAAAAGCCACGAAGAG | X84843 |
hopPsyA (hrmA) | syringae | 61 | TGGAACCTTATCGGGAAAATTTGCCACCCACCC | L14926 |
avrE | tomato | PT23 | GGGAACCGGTCGCTGCGCTTTGCCACTCACTT | U16119 |
avrE | tomato | DC3000 | TGGAACCCGCTGGCATTGCATGCCACTCATCC | AF232006 |
avrC | glycinia | Race 4 | TGGAACCGTTCTGCAACTCGTGCCACTAAGCT | M22219 |
avrPpiA1 | pisi | Race 2 | GGGAACTCATTTTCTTTTAAAACCACACATGT | AJ251482 |
avrRPM1 | maculicola | M2 | GGGAACTCATTTTCTTTTAAAACCACACATGT | X67808 |
avrPpiA2.R2 | pisi |
| GGGAACTCATTTTCTTTTAAAACCACACATGT | AJ222647 |
avrPphB | phaseolicola |
| TGGAACCGAATGGGTCAGCTGGACACTTAGAT | M86401 |
avrPpiC2 | pisi | Race 1 (299A) | GGGAACTGAACCGCTTATGAAACCACTCATTT | AJ277496 |
avrPpiG1 | pisi | Race 4A (895A) | TGGAACCACGGTAGCTTAGCTGACCACTCAAGG | AJ277495 |
avrPphD | phaseolicola | Race 4 (1302A) | TGGAACCCAAGAGCCCTTGCGACCACACATTG | AJ277494 |
avrPphF | phaseolicola | 1449A | TGGAACCAGCTACATAGGTATGACCACTGATCT | AF231453 |
hrpY | phaseolicola | 1302A | TGGAACCAACTCGCACGCAAAACCACACAGTT | PSJ224433 |
hrp /hrc gene |
|
|
|
|
hrpK | syringae | 61 | TGGAACCAACTCGCACGCAAAACCACACAGTT | Lab |
hrpJ operon | syringae | 61 | GGGAACCGAACCGCGTCAATGACCCACTCAGCG | Lab |
hrpU operon | syringae | 61 | TGGAACTGAAATCGATCCTCGACCACTTAGCA | Lab |
hrpC operon | syringae | 61 | TGGAACCGCTCCACCTGTTTGCTCCACTCAAGG | Lab |
hrpZ operon | syringae | 61 | TGGAACCGATTCGCGGACACATGCCACCTAGCT | L41863 |
hrpZ operon | syringae | B728a | TGGAACCGATTCGCGGACGCATGCCACCTAGCT | Lab |
hrpK | tomato | DC3000 | TGGAACCAACTTGCACCTTCAACCACACAGTT | Lab |
hrpJ operon | tomato | DC3000 | GGGAACTGATCCGGGACCGTGACCCACTCAGCG | Lab |
hrpU operon | tomato | DC3000 | TGGAACTGAAATCGATGCTCGACCACTTATCA | Lab |
hrpC operon | tomato | DC3000 | TGGAACCGCTCGGCGGGTTTGCTCCACTCAAGG | Lab |
hrpZ operon | tomato | DC3000 | TGGAACCGTATCGCAGGCTGCTGCCACCTAGTG | Lab |
hrpZ operon | phaseolicola | 1302A | TGGAACCGATTTAAGGGTCGTTACCACCTATCT | AF268940 |
From Tn5 screens |
|
|
|
|
| HrpF03 | orf00584 | TGGAACCTCACGCTTAGTGATGACCACGCATAG |
|
| HrpF07 | hrpW | GGGAACCGGTCGCTGCGCTTTGCCACTCACTT |
|
| HrpF09 | orf04808 | TGGAACCAGATCTCGTTGCTTGCCACCAAGGC |
|
| HrpF43 | iaal | CGGAACTGCAACGTTGTTTCGGTCACTCAGTG |
|
| HrpR20 | orf11016 | TGGAACCGGACGAGGCTTTTTACCACTCAATG |
|
| HrpR23 | AvrPto2 | TGGAACTCTTTCCTGCTCTTTTGCCACACAGCG |
|
| HrpR25 | orf07885 | CGGAACCGAATCCATATTTCGACCACCCATCC |
|
| HrpR26 | orf07755 | GGGAACCCTGCGCAGGTCATTGACCACTCAGTG |
|
| HrpR31 | orf7-cel | GGGAACCGCATCACGTCTTGAACCACAGAGGA |
|
| HrpR32 | hopPtoA | TGGAACCGTCAACCGATCCGGGACCACACAGCC |
|
| HrpR34 | hrmB/A | TGGAACCGCCTCGAGCAGAGGCTCCACTCATTG |
|
| HrpR36 | orf1-cel | GGGAACCGTAACGGCGAGCGTGCCACGTAGGG |
|
| HrpR40 | orf2-eel | TGGAACCGATTTCGATGAGTCGCCACACATAA |
|
| HrpR41 | AvrPpiC2 | GGGAACTGAACCGCTTATGAAACCACTCATTT |
|
| HrpR55 | Pectin lyase | CGGAACTCTTTCCCTGCGCTTTCCACTCAGGG |
|
| HrpR57 | orf00527 | CGGAACCGATCCGGTTGCCTGGCCACTCAATT |
|
| HrpR72 | AvrPphE | GGGCACCGACCACGCCGGTATCGCCACGCAGAT |
|
| HrpR85 | hrpA-related | AGGAACTCATCACCGCGAATCGCCACTCAGCA |
|