#NEXUS 

Begin trees;  [Treefile saved Tue Jan  8 17:05:21 2002]
[!
>Data file = /home/bjorn/bartonella/Glycolysis/Analysis15/Aldolase2/redaa2.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 500
>  Starting seed = 219653884
>  Optimality criterion = distance (minimum evolution)
>    Negative branch lengths allowed, but set to zero for tree-score calculation
>    Distance measure = mean character difference
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 578744930
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100
>  Zero-length branches not collapsed
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>   500 bootstrap replicates completed
>   Time used = 00:06:46 (CPU time = 00:06:39.8)
]
	Translate
		1 Helicobacter_py,
		2 Thermotoga_mari,
		3 Deinococcus_rad,
		4 Treponema_palli,
		5 Trichomonas_vag,
		6 Rhizobium_melil,
		7 Rhodobacter_sph,
		8 Caulobacter_cre,
		9 Pseudomonas_stu,
		10 Neisseria_menin,
		11 Alcaligenes_eut,
		12 Xanthobacter_fl,
		13 Nostoc_commune,
		14 Synechocystis_s,
		15 Cyanophora_para,
		16 Giardia_lamblia,
		17 Bacillus_subtil,
		18 Mycoplasma_pneu,
		19 Escherichia_col,
		20 Haemophilus_inf,
		21 Campylobacter_j,
		22 Borrelia_burgdo,
		23 Schizosaccharom,
		24 Saccharomyces_c,
		25 Neurospora_cras,
		26 Mycobacterium_l,
		27 Streptomyces_ga
		;
tree PAUP_1 = [&U] (1,2,(3,((4,5)100,(((6,7)69,8)78,(9,10)94,11,12,((13,14)64,15)83)100,16,(17,18)54,((((19,20)99,(21,22)66)100,((23,24)96,25)100)82,(26,27)100)100)78)88)0;
End;