#NEXUS 

Begin trees;  [Treefile saved Wed Jan  9 09:00:49 2002]
[!
>Data file = /home/bjorn/bartonella/Glycolysis/Analysis15/Kpy/redaa2.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 500
>  Starting seed = 1672316161
>  Optimality criterion = distance (minimum evolution)
>    Negative branch lengths allowed, but set to zero for tree-score calculation
>    Distance measure = mean character difference
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 625274227
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100
>  Zero-length branches not collapsed
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>   500 bootstrap replicates completed
>   Time used = 01:36:29 (CPU time = 01:36:28.5)
]
	Translate
		1 Ricinus_communi,
		2 Nicotiana_tabac,
		3 Borrelia_burgdo,
		4 Chlamydophila_p,
		5 Bartonella_hens,
		6 Mesorhizobium_l,
		7 Methylobacteriu,
		8 2Pseudomonas_ae,
		9 Zymomonas_mobil,
		10 Caulobacter_cre,
		11 1Agrobacterium,
		12 Mycobacterium_i,
		13 Streptomyces_co,
		14 Deinococcus_rad,
		15 1Synechocystis,
		16 2Synechocystis,
		17 2Escherichia_co,
		18 Haemophilus_inf,
		19 1Pseudomonas_hy,
		20 Neisseria_menin,
		21 Methanococcus_j,
		22 Thermotoga_mari,
		23 Pyrococcus_hori,
		24 Pyrococcus_abys,
		25 Mycoplasma_geni,
		26 Campylobacter_j,
		27 1Escherichia_co,
		28 Salmonella_typh,
		29 Bacillus_subtil,
		30 Drosophila_mela,
		31 Caenorhabditis,
		32 Rattus_norvegic,
		33 Trypanosoma_bru,
		34 Aspergillus_nig,
		35 Yarrowia_lipoly,
		36 Arabidopsis_tha,
		37 Glycine_max_cyt,
		38 Eimeria_tenella,
		39 Lactococcus_lac,
		40 Aeropyrum_perni,
		41 Thermoproteus_t
		;
tree PAUP_1 = [&U] (1,2,((3,4,(5,(6,7)95)62,8,9,10,11,(12,13)100,14,15,16,((17,18)100,(19,20)92)100,(21,22)90,(23,24)100,26,((27,28)100,29)52,((30,31)59,32,33,(34,35)95)70,((36,37)100,38)62,39,(40,41)92)53,25)100)0;
End;