#NEXUS 

Begin trees;  [Treefile saved Wed Jan  9 16:42:39 2002]
[!
>Data file = /home/bjorn/bartonella/Glycolysis/Analysis15/Pgk/redaa2.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 500
>  Starting seed = 1527093848
>  Optimality criterion = maximum parsimony
>    Character-status summary:
>      Of 200 total characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        15 characters are constant
>        26 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 159
>    Gaps are treated as "missing"
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 952168425
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>   500 bootstrap replicates completed
>   Time used = 03:14:40 (CPU time = 03:12:48.3)
]
	Translate
		1 Mycoplasma_geni,
		2 Ureaplasma,
		3 Alcaligenes_eut,
		4 Neisseria_menin,
		5 Escherichia_col,
		6 Pseudomonas_sp.,
		7 Brucella_abortu,
		8 Mesorhizobium_l,
		9 Zymomonas_mobil,
		10 Xanthobacter_fl,
		11 Caulobacter_cre,
		12 Bartonella_hens,
		13 1Triticum_aesti,
		14 Nicotiana_tabac,
		15 2Triticum_aesti,
		16 Chlamydomonas_r,
		17 Synechocystis_s,
		18 1Phaeodactylum,
		19 2Phaeodactylum,
		20 Bacillus_megate,
		21 Mycobacterium_l,
		22 Streptomyces_co,
		23 Thermotoga_mari,
		24 Thermus_thermop,
		25 Borrelia_burgdo,
		26 Treponema_palli,
		27 Mus_musculus,
		28 Aplysia_califor,
		29 Drosophila_mela,
		30 Caenorhabditis,
		31 Opisthorchis_si,
		32 Schistosoma_man,
		33 Aspergillus_ory,
		34 Saccharomyces_c,
		35 Plasmodium_falc,
		36 Euplotes_crassu,
		37 Tetrahymena_the,
		38 1Crithidia_fasc,
		39 2Crithidia_fasc,
		40 Chlamydia_pneum,
		41 Chlamydia_trach,
		42 Helicobacter_py,
		43 Campylobacter_j,
		44 Aquifex_aeolicu,
		45 Aeropyrum_perni,
		46 Sulfolobus_solf,
		47 Haloarcula_vall
		;
tree PAUP_1 = [&U] (1,2,((3,4,(5,6)79)100,((7,8)86,9,10,11,12)82,((13,(14,15)83)65,16)59,17,18,19,20,(21,22)76,23,24,(25,26)53,(27,28,29,30,(31,32)84,33,34,35,36,37)96,(38,39)95,(40,41)100,42,43,44,(45,46)92,47)71)0;
End;