;; saved by seaview on Tue Jul 3 16:33:47 2001 ;;# of segments=5 all seqs ;; 85,202 230,271 292,296 316,342 353,356 ;no comment cp_Porphyra_purpurea ------------------------MSYPKKVELPLTNCN--------------------- ---------------QINLTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQ EAVSTGVIKLLD-SKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIF SAPHNFLGGFAFIAEGIPVATGA--AFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFF ECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHK-KAEAFGLPGIEVDGMD-VLA VRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADP-DELRSRQEK-EAWVARDPIKKLK KHILDNQIASSDELNDIQSSVKIDLE-QSVEFAMSSPEPNI--SELKRYLFADN------ ------------------------- ;no comment Synechocystis_sp. --------------------------MVSERILPELNTA--------------------- ---------------EISLDRETALVLYEDMVLGRFFEDKCAEMYYRGKMFGFVHLYNGQ EAVSSGIIKAMRQDEDYVCSTYRDHVHALSAGVPAREVMAELFGKETGCSRGRGGSMHLF SSAHNLLGGFAFIGEGIPVALGA--AFQTKYRREVLKDDGYDQVTACFFGDGTSNNGQFF ECLNMAALWKLPILFVVENNKWAIGMAHERATSQPEIYK-KASVFNMVGVEVDGMD-VVA MHKVATEAVARARAGEGPTLIEALTYRFRGHSLADP-DELRSAEEK-QFWAARDPIKKFA AFMTEHELASNEELKAIDKRIQEVID-DALAFAESSPEPNP--EDLRKYIFAD------- ------------------------- ;no comment Thiobacillus_ferrooxidans ------------------------------------------------------------ ------------------MDATDQKRLLREMLFARRFEERCAEAYHERQIGGFLHLYPGE EACAIGVLEKARTGSDYVVTGYRDHIHALKSGMDPKALMAELFGKETGCSKGRGGSMHLF DPDVHFMGGYALVGGPFPLAAGF--AKAIQLR-------GSDEISICFLGDGANNQGTFH ETMNMASLWNLPVLFVCENNLYGIGTAIERSTVEINQYK-RVAPYRIEAAQCDGQD-IDV VMDHAEKAVQYVREKRKPYFLELMTYRLRGHSMSDS-GAYRSKEEV-EEWAQRDPIGIYK HRLLEAGVVSEDEFHAMDKAILDEIENEIVRFAAESPEPRL--EDIARYVYTEKEAGSHG ------------------------- ;no comment Rhizobium_meliloti --------------------------MAPRKSASVSSRKT-----------------AAK PA-----KKDFAGGTIAEFSKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQ EAVVVGMQLALKEG-DQVITGYRDHGHMLACGMSARGVMAELTGRRGGLSKGKGGSMHMF SKEKHFYGGHGIVGAQVSLGTGL--AFANRYRGND-------NVSLAYFGDGAANQGQVY ESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQ-RGASFGIPGYQVDGMD-VRA VKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDP-AKYRSKDEVQKMRSEHDPIEQVK ARLTDKGWATEDELKQIDKEVRDIVA-DSADFAQSDPEPDV--SELYTDILL-------- ------------------------- ;no comment Mesorhizobium_loti --------------------------MATAARKAPAKSKS-----------------EGK --------SGLSAPKPAEFTKDEELAAYRHMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQ EAVVTGMKMALIDG-DQMITAYRDHGHMLAMELSPRGVMAELTGRRGGLSKGKGGSMHMF SKEKHFYGGHGIVGAQVSLGTGL--AFANRYRDNN-------NVSLTYFGDGAANQGQVY ESFNMASLWKLPVIYIIENNRYAMGTSVSRSSAETNFSH-RGASFKIPGIQVDGMD-VRA VKSAGDQATEWCRAGNGPIILEMQTYRYRGHSMSDP-AKYRSKEEVQKMRSEHDPIEQVK ARLTEKKWATEDELKTIDKEVRDIVA-DAAEFAQNDAEPDP--SELWTDIVL-------- ------------------------- ;no comment Bartonella_henselae --------------------------MAERLKKNSASVVH-----------------NAL S-------NTTKKAKIANFTKEEEIDAYREMLLIRRFEEKAGQLYGMGLIGGFCHLYIGQ EAVVIGTLKAAKEG-DQVITSYRDHGHMLAVGMSPRGVMAELTGRQGGFSKGKGGSMHMF SKEKNFYGGHGIVGAQVPIGSGL--AFSNQYLGKD-------NVTLVYFGDGAANQGQVY ESFNMASLWKLPVVYIIENNQYAMGTSVARASAETDFSR-RGLSFEIPGIVVDGMD-VRA VKGAADEAITWTRSGKGPIILDMQTYRYRGHSMSDP-AKYRSKEEVQKIKEEQDPIDQVR NRILQQGFASEDDLKSIDKEVRAIVA-DAVDFAQSDQEPDA--SELYTDILV-------- ------------------------- ;no comment Azorhizobium_caulinodans --------------------------MAARKPSARAEAAP-----------------AGV P----------------TFTKEQELLAYREMLLIRRFEEKAGQMYGMGLIGGFCHLYIGQ EAVVVGMQMAMKQG-DQVITGYRDHGHMLATGMESRGVMAELTGRKGGYSKGKGGSMHMF SIEKQFFGGHGIVGCAGVAGHRP--RLREPLSAEN------GSVSVTYFGDGAANQGQVY ESFNMAELWKLPVVYVIENNKYAMGSAVSRASAQTDFSK-RGQSFNIPGEQVDGMDSAQP VKAAGERALEFARSGKGPYILEMQTYRYRGHSMSDP-AKYRSKEEVQKMRTEHDPIEQVR NRLLEAGLVTEDELKKVDAEIRDIVN-DAADFATHDPEPDP--SELYTDIVR-------- ------------------------- ;no comment Caulobacter_crescentus --------------------------MARTRKAEASEGKA-----------------PET G-------------VNAFVGKDELLKFYQDMLLIRRFEERAGQLYGMGLIGGFCHLYIGQ EAIAVGMQSISQKG-DQIITGYRDHGHMLAAGMDPREVMAELTGRAGGSSKGKGGSMHMF DIATGFYGGHGIVGAQVALGTGL--ALANSYRNNG-------NVSYAYMGDGAANQGQVY ESFNMAQLWKLPVVYVIENNQYAMGTAVERAASETAFHK-RGVSFRIPGEEVDGMD-VIA VREAGARATEHARSGQGPYILEMKTYRYRGHSMSDP-AKYRTKEEVDEVKTTRDPIDHIK ERLAKAG-VTEDDLKGVDAEVKRIVA-EAAEFARTSPEPDP--SELYTDVYLEAAE---- ------------------------- ;no comment Zymomonas_mobilis --------------------------MAKATQDSNRPHKAD--------------VGSAI PN-----HDLPPIPGRYHADREELLEFYRRMLMIRRFEERCGQLYGLGLIAGFCHLYIGQ EAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMHMF STEHKFFGGNGIVGAQVPLGAGL--AFAHKYRNDG-------GCSAAYFGDGSANQGQVY EAYNMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSE-RGAGFGIPALVVDGMD-VLE VRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDP-ARYRSREEVNDMKENHDPLDNLK KDLFAAG-VPEAELVKLDEDIRQQVK-EAADFAEKAPLPAD--EELYTNILVGKY----- ------------------------- ;no comment Rickettsia_prowazekii ---------------------------VDIKPEKYKP----------------------- -------------------IKEEYIKSFKDMLLLRRFEEKCGQLYGMGKIGGFCHLYIGQ EAVISAVAMIKKKG-DSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLF DIPNKFYGGHGIVGAQVPIGTGL--AFAEKYNGTN-------NICFTFLGDGAVNQGQVY EAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYK-KGESFGIRGFQLDGMD-FEE MYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDP-AKYRSKEEVEKYK-ERDTLVRIR EIILDNKYATEADLKAIEQSVREIIK-VAVEFSENSPLPAE--DELYTEIYV-------- ------------------------- ;no comment Ascaris_suum --------------------MIFVFANIFKVPTVSPSVMAISVRLAS----TEATFQTKP FK---LHKLDSGPDINVHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLYSGQ EACAVGTKAAMDAG-DAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNVYGKGGSMHMY --GENFYGGNGIVGAQQPLGTGI--AFAMKYRKE-------KNVCITMFGDGATNQGQLF ESMNMAKLWDLPVLYVCENNGYGMGTAAARSSASTDYYT-RGD--YVPGIWVDGMD-VLA VRQAVRWAKEWCNAGKGPLMIEMATYRYSGHSMSDPGTSYRTREEVQEVRKTRDPITGFK DKIVTAGLVTEDEIKEIDKQVRKEID-AAVKQAHTDKESPV--ELMLTDIYYNTPAQYVR -CTTDE-VLQKYLTSEEAVKALAK- ;no comment Caenorhabditis_elegans ---------------------MSLFARQLQSLTAS-GIRTQQVRLAS----TEVSFHTKP CK---LHKLDNGPNTSVTLNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQ EACAVGMKAAMTEG-DAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMY --TKNFYGGNGIVGAQQPLGAGV--ALAMKYREQ-------KNVCVTLYGDGAANQGQLF EATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYT-RGD--YVPGIWVDGMD-ILA VREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFK DRIITSSLATEEELKAIDKEVRKEVD-EALKIATSDGVLPP--EALYADIYHNTPAQEIR GATIDETIVQPFKTSADVLKSIGRA ;no comment Mus_musculus --------------------MRKMLAAVSRVLAGSAQKPASRVLVASRNFANDATFEIKK CD---LHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQ EACCVGLEAGINPT-DHLITAYRAHGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMY --AKNFYGGNGIVGAQVPLGAGI--ALACKYNGK-------DEVCLTLYGDGAANQGQIF EAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK-RGD--FIPGLRVDGMD-ILC VREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLK DRMVNSNLASVEELKEIDVEVRKEIE-DAAQFATADPEPPL--EELGYHIYSSDPPFEVR ----GANQWIKFKSVS--------- ;no comment Rattus_norvegicus --------------------MRKMLAAVSHVLAGAAQKPASRVLVASRNFANDATFEIKK CD---LHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQ EACCVGLEAGINPT-DHLITAYRAHGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMY --AKNFYGGNGIVGAQVPLGAGI--ALACKYNGK-------DEVCLTLYGDGAANQGQIF EAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK-RGD--FIPGLRVDGMD-ILC VREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLK DRMVNSNLASVEELKEIDVEVRKEIE-DAAQFATADPEPPL--EELGYHIYSSDPPFEVR ----GANQWIKFKSVS--------- ;no comment Homo_sapiens --------------------MRKMLAAVSRVLSGASQKPASRVLVASRNFANDATFEIKK CD---LHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQ EACCVGLEAGINPT-DHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMY --AKNFYGGNGIVGAQVPLGAGI--ALACKYNGK-------DEVCLTLYGDGAANQGQIF EAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK-RGD--FIPGLRVDGMD-ILC VREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLK DRMVNSNLASVEELKEIDVEVRKEIE-DAAQFATADPEPPL--EELGYHIYSSDPPFEVR ----GANQWIKFKSVS--------- ;no comment Sus_scrofa ---------------------GKMLAAVSRVLSGVAQKPASRVLVASRTFANDATFEIKK CD---LHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQ EACCVGLEAGINPT-DHLITAYRAHGFTFTRGLSVREILAELTGRRGGCGKGKGGSMHMY --AKNFYGGNGIVGAQVPLGAGI--ALACKYNGK-------DEVCLTLYGDGAANQGQIF EAYNMAALWKLPCVFICENNRYGMGTSVERAAASTDYYK-RGD--FIPGLRVDGMD-ILC VREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLK DRMVNSNLASVEELKEIDVEVRKEIE-DAAQFATADPEPPL--EELGYHIYCNDPPFEVR ----GANQWIKFKSIS--------- ;no comment Trypanosoma_cruzi -----------------------MFRSASCILLAAKTIPIN----------PQKPFKLHT AG---RDDVPPVP-TTATYDTEQMKKCLEMMFRIRRMESLCDQSYKLKKIRGFCHLYIGQ EAIPVGMENVLTLE-DLIVTAYRDHAWYIVRGGTPGEVFAEMFGKEGGCSKGKGGSMHMY SVKNNFFGGNGIVGAQVPIGAGLGWRFALENRDKP------RNVAVTFYGDGAANQGQVF EAMNIAAIHRIPVIFCCENNQFGMGTSKERAAYQPEMYR-RGD--YIPGLQVDGMD-VLA VQEGTRWAKEWCLSGKGPIVLEFDSYRYVGHSMSDPDSQYRKKSDIQDVRKTRDCIHKMK DFMLEEGIMTDEEMKKLEKDVKKEVD-QQLQPAEKQKPTPR--SELFTDIYVG-EQYEHR -----TTQGTVYAKP---------- ;no comment Kluyveromyces_lactis --MLSLKAQSS--VVGKSSSLRLVRNFSKNVRALS--QVADETKPGDD-----DLVQIDL PETSFEGYLLDVPELSYQTTKSNLLQMYKDMIIVRRMEMACDALYKAKKIRGFCHSSVGQ EAIAVGIENAITKR-DTVITSYRCHGFTYMRGAAVQAVLAELMGRRTGVSFGKGGSMHLY AP--GFYGGNGIVGAQVPLGAGL--AFAHQYKHE-------DACSFALYGDGASNQGQVF ESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFK-RGQ--YIPGLKVNGMD-ILA VTKL----KDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLK MHLLELGIATEDEIKAYDKAARKYVD-EQVELADAAPAPEAKMSILFEDVYVPGSETPTL R---GRLQEDTWDFAKKSFAFRD-- ;no comment Saccharomyces_cerevisiae MLAASFKRQPSQLVRGLGAVLRTPTRIG-HVRTMATLKTTDKKAPEDIEGS--DTVQIEL PESSFESYMLEPPDLSYESSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFCHLSVGQ EAIAVGIENAITKL-DSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLY AP--GFYGGNGIVGAQVPLGAGL--AFAHQYKNE-------DACSFTLYGDGASNQGQVF ESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFK-RGQ--YIPGLKVNGMD-ILA VYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLK MHLIDLGIATEAEVKAYDKSARKYVD-EQVELADAAPPPEAKLSILFEDVYVKGTETPTL R---GRIPEDTWDFKKQGFASRD-- ;no comment Schizosaccharomyces_pombe ----MFRTCTK--IGTVPKVLVNQKGLIDGLRRVTTDATTSRANPAHVPEEHDKPFPVKL DDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQ EAVAAGIEGAITLD-DSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIF AK--NFYGGNGIVGAQIPLGAGI--GFAQKYLEK-------PTTTFALYGDGASNQGQAF EAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYK-RGQ--YIPGLLVNGMD-VLA VLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLK KHIMEWGVANANELKNIEKRIRGMVD-EEVRIAEESPFPDPIEESLFSDVYVAGTEPAYA R---GRNSLEYHQYK---------- ;no comment Arabidopsis_thaliana --MALSRLSSRSN-----IITRPFSAAFS--RLISTDTTP-------------ITIETSL P---FTAHLCDPPSRSVESSSQELLDFFRTMALMRRMEIAADSLYKANVIRGFCHLYDGQ EAVAIGMEAAITKK-DAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFY KKESSFYGGHGIVGAQVPLGCGI--AFAQKYNKE-------EAVTFALYGDGAANQGQLF EALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD--YVPGLKVDGMD-AFA VKQACKFAKQHALE-KGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIK KLVLSHDLATEKELKDMEKEIRKEVD-DAIAKAKDCPMPEP--SELFTNVYVKGFGTESF G---PDRKEVKASLP---------- ;no comment Pisum_sativum --MALSRLSSSSSSSNGSNLFNPFSAAFTLNRPISSDTTAT------------LTIETSL P---FTAHNCDPPSRSVTTSPSELLSFFRTMALMRRMEIAADSLYKANLIRGFCHLYDGQ EAVAVGMEAGTTKK-DCIITAYRDHCTFLGRGGTLLRVYAELMGRRDGCSKGKGGSMHFY KKDSGFYGGHGIVGAQVPLGCGL--AFGQKYLKD-------ESVTFALYGDGAANQGQLF EALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFK-RGD--YVPGLKVDGMD-ALA VKQACKFAKEHALK-NGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVR KLLLSHDIATEKELKDTEKEVRKEVD-EAIAKAKDSPMPDP--SDLFSNVYVKGYGVEAF G---VDRKEVRVTLP---------- ;no comment Solanum_tuberosum --MALS--TSRAIN----HIMKPLSAAVCATRRLSSDSTAT------------ITVETSL P---FTSHNIDPPSRSVETSPKELMTFFKDMTEMRRMEIAADSLYKAKLIRGFCHLYDGQ EAVAVGMEAAITKK-DCIITAYRDHCIFLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFY KKESGFYGGHGIVGAQVPLGIGL--AFAQKYKKE-------DYVTFAMYGDGAANQGQLF EALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYK-RGD--YVPGLRVDGMD-VFA VKQACTFAKQHALK-NGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPVERIR SLILAHNIATEAELKDIEKENRKVVD-EAIAKAKESPMPDP--SELFTNVYVKGFGVEAY G---ADRKELRATLP---------- ;no comment mtZea_mays --MAAAALLRRLPA----ARAQAQAPAFMAARPIS-DSTAA------------LTIETSV P---FTSHLVDPPSRDVTTTPAELVTFFRDMSLMRRMEIAADSLYKAKLIRGFCHLYDGQ EAVAVGMEAAITRS-DSIITAYRDHCTYLARGGDLVSAFSELMGREAGCSRGKGGSMHFY KKDANFYGGHGIVGAQVPLGCGL--AFAQKYKKE-------DTATFALYGDGAANQGQLF EALNISALWKLPAILVCENNHYGMGTAEWRAAKSPAYYK-RGD--YVPGLKVDGMD-VLA VKQACKFAKDHAVA-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVR KLLLTHDLANAAELKNMEKEIRKQVD-DAIAKAKESSMPDT--SELFTNVYKKGFGVESF G---PDRKEMRASLP---------- ;no comment Chlamydia_trachomatis ----------------------MHP-LTLNIASEETTEAR-------------------- -----------VFHVIENFGNSFCIDLLKKMLLIREFEIRGEEAYLEGLVGGFYHSYIGQ EAVATAAIACTGKD-HWFFSSYRCHGVALLLDIPLRQLAAELLGKETGCALGRGGSMHMC G--DRLPGGFGIVGGQIPLAAGA--AFSMKYQNSSS-------ISMCFIGDGAVAQGVFH ETLNFVALHSLPLMLIIENNGWSMGTALHRAIAKQPIAESQAISYGLSSITLNGFD-LFN SLIGFREAYHHMQQTGSPIIVEALCSRFRGHSISDP-NLYRS-KEEMQCLLKRDPILFAK EWLIRANVLSEDDFKDLRQTSKTAVL-EAVAQARLDPEPAV--ATLEEGVYA-------- ------------------------- ;no comment Chlamydophila_pneumoniae ----------------------MDSSAPYNIASQGTEKST-------------------- -----------VERILDLYGPASCIKFLKQMVLIREFEARGEEAYLEGLVGGFYHSYAGQ EAVATAAIANTGLD-PWVFSSYRCHALAILLNIPLQEIAAELLGKETGCALGRGGSMHMC G--PNFPGGFGIVGGQIPLAAGA--AFTIKYQEQKNR------VSLCFIGDGAVAQGVFH ETLNFVSLHQLPLMLIIENNGWSMGTSLNRAVAKQPIAESQGSSYDIRAVTVNGFD-LFN SLLGFREAYRYMVDTESPVLVECLCSRFRGHSISDP-NLYRS-KEEMQCLFKKDPIVLAK DWLIRLEVLTEEEFQNIRQECKTAVL-EAFSNAKLSSDPSV--TTLEEGVYA-------- -------------------------