#NEXUS [!Imported GCG-MSF file "redaa2.gcg" (Wed Jan 9 06:19:27 2002)] [PileUp MSF: 182 Type: P Check: 4300 .. ] Begin data; Dimensions ntax=34 nchar=182; Format datatype=protein interleave gap=. missing=~ equate="-=."; Matrix Borrelia_burgdo ENRKVLHHLT RGVQIGIGGS SLGPFISNID PDESEEVLSS INVTLFIIVS Treponema_palli EKRKVLHHLT RLVQIGIGGS DLGPFISNVD PDDAALVLSK LPLTLFILVS Chlamydia_pneum EMRPALHTAT RAVQIGIGGS ELGPFISNID PDNGAEVLDT IDCALVVVVS Chlamydia_murid ESRSVLHTAT RAVQIGIGGS ELGPFVSNID PDNAAEVLKE VDLTLIVVVS Plasmodium_falc ENRSVLHTAL RIICIGIGGS YLGTFLANVD PNDVNRAIQN LDQTLVIIIS Toxoplasma_gond ENRAVLHVAL RMISIGIGGS YLGTFLANVD PVDVWLAERG FDPTLVVVIS Spinacia_olerac ENRSVLHVAL RAVAVGIGGS FLGPFLANVD PIDVAKNISG LNPTLVVVVS 2Arabidopsis_th ENRSVLHVAL RAIAIGIGGS FLGPFLANID PVDVARNISG LNPTLVVVVS Clarkia_lewisii ENRSVLHVAL RAIAVGIGGS FLGPFLANVD PIDVARNISG LNPTLVVVVS Zea_mays ENRSVLHVAL RAVSVGIGGS FLGPFLANVD PVDVARSIKD LDPTLVVVVS Cricetulus_gris EDRAVLHVAL RNVNIGIGGS DLGPFVSNID GTHIAKTLAN LTPSLFIVAS Sus_scrofa EDRAVLHVAL RNINIGIGGS DLGPFVSNID GTHIAKTLAT LNPSLFIIAS Drosophila_mela ENRAVLHTAL RNVNIGIGGS DLGPFVSNID GTHLAEVLKK VNYTLFIVAS Drosophila_yaku ENRAVLHTAL RNVNIGIGGS DLGPFVSNID GTHLAEVLKK VNYTLFIVAS Escherichia_col ENRAVLHVAL RNVNIGIGGS DLGPFVSNVD GTHIAEVLKK VNPTLFLVAS Haemophilus_inf ENRAVLHTAL RNVNIGIGGS DLGPFVSNVD GTHIAETLKK VNPTLFLVAS Kluyveromyces_l EGRAVYHVAL RNVNIGIGGS DLGPFVSNID GTHIAETLKD LDHTLFLIAS Schizosaccharom EDRAVFHPAL RNVNVGIGGS DLAPFVSNID GTHLSEALKK CDPTLFLIAS Leishmania_mexi ENRAVLHVAL RNVNIGIGGS DLGPFVSNVD GTHMAEVLKQ VNLTIFIIAS Trypanosoma_bru ENRPVLHIAL RNVNIGIGGS DLGPFVSNVD GTHIAEVLKS IDITLFIVAS Helicobacter_py EKRAVLHTAL RSVNIGIGGS DLGAFVSNVD GTQILDVLEK LNPTLFIVAS Neisseria_menin ENRAVLHVAL RNVNIGIGGS DLGPFVSNVD GSQLRDVLSK VHPTLFIIAS Streptomyces_co EDRAVLHTAL RAVNIGIGGS DLGPFVSNVD GADLHEAVRD LDPTLFIIAS Deinococcus_rad EGRAVLHTAL RAVNIGIGGS DLGPFVSNVD GTDLTEKTRD LDPTLFIVSS Mycobacterium_t EDRAVLHTAL RLVNIGIGGS DLGPFVSNVD PADLIATLAD LDPTLFIVAS Bartonella_hens EKRSVLHIAL RLVNIGIGGS DLGPFVSNAD SAHISDTLSV LNPTLFVIAS Mesorhizobium_l EDRAVLHTAL RNVNIGIGGS DLGPYVSNID GAHIHDTLKG LSATLFIVAS Acinetobacter_c EQREAMHWAL RLVNIGVGGS DLGPFVSTMD GSQLSDILHQ LRPTLFIVSS Neisseria_menin EGRAALHTAL RLVHIGIGGS DLGPFAANAD PACLDAVLCR LNPTVFCVAS Zymomonas_mobil EDRAVEHMAE RGLHIGIGGS ALGPVVSNVD GQALEEVFKK FNPTLIAVAS Caulobacter_cre EGRAVLHTAL RALHIGIGGS DLGPFVANVD GAEFALTTAD MDPTLVMVVS Spinacia_olerac EGRMVGHYWL RNLSVGIGGS ALGPFIDNTD PAGIDHQIAQ LGPTLVMVIS 1Arabidopsis_th EGRMVGHYWL RNLSVGIGGS ALGPFIDNTD PAGIDHQIAQ LGPTLVVVIS Synechocystis_s EQRMVGHYWL RNLAIGIGGS ALGPFIDNSD PDGIDRVLNC LKATLVVTTS Borrelia_burgdo KSGNTLETVI ITIGGRFSPT SAVGDKKSLN KNVKDNASLL AALIIIAYSK Treponema_palli KSGTTLETVA VTIGGRYSSS SVCGDRAAQE QDIRRNAALL DALIVLPYSQ Chlamydia_pneum KSGTTIETIA VTIGGRFSST SMVGDQIALQ PNARENLPML SALIVIPYSS Chlamydia_murid KSGTTLEPVA VTVGGRFSAT SMVGDAHALT PIMEKNLPLL SAMLVIPYAT Plasmodium_falc KTFTTAETVA VSVGGRFSVT SSVGDEHFLH ADLKENIPVL LALTILPYFQ Toxoplasma_gond KTFTTAETCA VSVGGRYSVT SAVGDVHFKT AELADNLPML MGLIVLPYAQ Spinacia_olerac KTFTTAETVA VSVGGRYSVC SAVGDQHFHS APLEKNLPVL LGLLILPYCQ 2Arabidopsis_th KTFTTAETVA VSVGGRYSVC SAVGDQHFQS TPFEKNIPVL LGLLILPYSQ Clarkia_lewisii KTFTTAETVA VSVGGRYSVC SAVGDQHFSS APFEKNIPVL LGLLILPYSQ Zea_mays KTFTTAETIA VSVGGRYSVC SAVGDNHFYS SSFEKNIPVL LGLLILPYSQ Cricetulus_gris KTFTTQETIA LSVGGRYSLW SAIGDQHFRK TPLEKNAPVL LALLLLPYDQ Sus_scrofa KTFTTQETVA LSVGGRYSLW SAIGDQHFRT TPLEKNAPVL LALLMLPYDQ Drosophila_mela KTFTTQETVA LSVGGRYSLW SAIGDNHFKT TPFEKNAPVI LALLLLPYDQ Drosophila_yaku KTFTTQETVA LSVGGRYSLW SAIGDNHFRT TPLEKNAPVI LALLLLPYDQ Escherichia_col KTFTTQETAA LSVGGRYSLW SAIGDKHFST TPAEKNLPVL VALIILPYDQ Haemophilus_inf KTFTTQETAA LSVGGRYSLW SAIGDKHFLS TPIEQNIPTT LALVILPYDQ Kluyveromyces_l KTFTTAETAA LSVGGRYSVW SAIGDKHFVE TPLEDNIPLL GGLLVAPFDQ Schizosaccharom KTFTTAETVA LSVGGRYSVW SAIGDEYFCS TPLEKNIPAL AALIVAPYDQ Leishmania_mexi KTFTTQETVA LSVGGRYSVW SAIGDNHFAS TPTEQNLPMM LALVVLPYDQ Trypanosoma_bru KTFTTQETVA LSVGGRYSMW SAIGDEHFAN APPEQNVPLL LALVILPYDQ Helicobacter_py KTFSTQETVA VSVGGRYSLW SAIGDEHFRN APFESNLPVL MGLIIAPYDQ Neisseria_menin KTFTTQETAA VSVGGRYSLW SAIGDQHFIN TPLERNLPVI LALIIAPYDQ Streptomyces_co KTFTTIETVA LSVGGRYSFD SAIGDEHFRN AEAPANAPLL LGLLVLPYSH Deinococcus_rad KTFTTQETVA VSVGGRYSMD SAIGDEHFRT APAEQNLPML MGLLVLPYDQ Mycobacterium_t KTFSTLETVA VSVGGRYSVD SAIGDRHFAT APLESNAPVL LGLIVLPYSN Bartonella_hens KTFTTAETIA VSVGGRYSIW SAIGDRHFKT APLRKNIPIR FALLVIPYAQ Mesorhizobium_l KTFTTVETAA VSVGGRYSVW GAIGDQHFRT APLAGNLPAL LGLVVIPYDQ Acinetobacter_c KSFSTIDTIG VSVGGRYSLW SCIGDEHFRT TEFHQNIPVL MGLMVLPYDG Neisseria_menin KSFKTPETCA VSVGGRYSVW SPVGDRHFFS TPTRHNIPVL MALIAVPYSH Zymomonas_mobil KTFTTAETIA LTIGGRYSLW SSIGDRHFLE AAPEKNAPIL AAFAIFAYDE Caulobacter_cre KTFTTQETAA ISVGGRYSLW SSVSDEHFRT APLEQNAPVL VALAVVPYSH Spinacia_olerac KSGGTPETVA ITVGGRTSEM SAVGDEATKI PVLRSNPAAL LAMSVLPYKD 1Arabidopsis_th KSGGTPETVA ITVGGRTSIM SAVGDEATRT TSIKNNPAAL LAMCVLPYKD Synechocystis_s KSGGTPEPVA VTVGGRTSEL SAVGDEATRV RELRQNPAAL LALAILPYKD Borrelia_burgdo AMENFYLHLQ QLEMESNGKQ HSFFQMLHQG SALIYSKELT PYAIGAILSH Treponema_palli ALARFPAHLQ QLDMESNGKQ HSFYQHLHQG SSLLYAKALT PQTLGALLAH Chlamydia_pneum GLEFFPAHLQ QCCMESNGKQ HSFFQCLHQG SSVLVSSQLN PYSLGELLSY Chlamydia_murid GLKYFTAHLQ QCGMESNGKQ HSFFQSLHQG SSILVAQQLS PRIAGGLLAF Plasmodium_falc NLLKFSAHIQ QLSMESNGKQ HSFYQLIHQG STLLLFDELN FYTCGLLLSL Toxoplasma_gond ALLRFPAHIQ QLTMESNGKQ HSFYQLIHQG SCMLLFPEIS PFHIGQLLAL Spinacia_olerac ALEKFAPHIQ QVSMESNGKQ HSFYQLIHQG SLSLLLPSLT AYNVGQLLAI 2Arabidopsis_th ALEKFAPHIQ QVSMESNGKQ HSFYQLIHQG SLSLLLPELT AYNVGQLLAI Clarkia_lewisii ALEKLAPHIQ QVSMESNGKQ HSFYQLIHQG SISILLPTLD AYRIGQLLAI Zea_mays ALEKLAPHIQ QLSMESNGKQ HSFYQLIHQG SLSLLLPTLS AYEVGQLLSI Cricetulus_gris YMHRFAAYFQ QGDMESNGKQ HAFYQLIHQG TNSIVFTKLT PFILGALIAL Sus_scrofa YLHRFAAYFQ QGDMESNGKQ HAFYQLIHQG TNSIVFTKLT PFILGALIAM Drosophila_mela YLHRFAAYFQ QGDMESNGKQ HAFYQLIHQG TNSIVVKKVS PFTLGALIAL Drosophila_yaku YLHRFAAYFQ QGDMESNGKQ HAFYQLIHQG TNSIVVKKVS PFTLGALIAL Escherichia_col YMHRFAAYFQ QGNMESNGKQ HAFYQLIHQG TNSILLREIT PFSLGALIAL Haemophilus_inf YLHRFAAYFQ QGNMESNGKQ HAFYQLIHQG TNSILVQKIT PFTLGALIAM Kluyveromyces_l YLHRFPAYLQ QLSMESNGKQ HSFFQLIHQG TTSILAQKIT PATLGALIAY Schizosaccharom YLHRFPAYLQ QLSMESNGKQ HSFFQLIHQG SNSIIAKKIT PASLGALIAF Leishmania_mexi YLWRLPAYLQ QLDMESNGKQ HAFYQLIHQG SNSILVNALT PRALGAIIAM Trypanosoma_bru YLWRLPAYLQ QLDMESNGKQ HAFYQLIHQG SNTLLIKSLT PRALGAIIAM Helicobacter_py YLRHFPKFIQ QLDMESNGKQ HAFFQLLHQG SNILLLEKIS PSNIGALVAL Neisseria_menin HLHRLPKFIQ QLDMESNGKQ HAFFQLLHQG TNLILMDKVN PRNMGSLIAM Streptomyces_co YLSKFTAYLQ QLDMESNGKQ HAYYQLIHQG TTTVLAAELT PSVLGQLIAL Deinococcus_rad YLASFPAYLQ QLDMESNGKQ HAFYQLIHQG TSTILADRLT PRTLGALIAL Mycobacterium_t DLSRFPAYLQ QLTMESNGKQ HAFYQLLHQG STSILASRLT PSVLGQLIAL Bartonella_hens RLARFPAYLQ QLDMESNGKQ HAFFQLLHQG NMMLVQDLLT PFALGRLIAL Mesorhizobium_l RLSRLPAYLQ QLDMESNGKQ HAFFQLLHQG SLTILYRKLD PRTFGRLIAL Acinetobacter_c RLKYFTSYLQ QLEMESNGKQ HAFYQLLHQG STTMLLKELS PRTMGKLIAL Neisseria_menin NLRLLPAWLN QLDMESLGKQ HAYFQLLHQG SNSILIDRLT PYNLGMLMAA Zymomonas_mobil RLQLLPFYLQ QLEMESNGKQ HAVFQLLHQG STTILMEELR PAQLGALIAF Caulobacter_cre RLRRLAAFLQ QLEMESNGKQ HAYFQCMHQG STLVLLDRLT PQTFGALIAL Spinacia_olerac SLLLFSRYLQ QLVMESLGKQ HAYIQQLRDG SISVTVQEVT PRSVGAMVAL 1Arabidopsis_th SLLLFSRYLQ QLVMESLGKQ HAYIQQLRDG SISVTIQEVT PTSVGAIIAL Synechocystis_s RLLLFSRYLQ QLVMESLGKQ HAYVQQLRDG SITVTIPEVD ATSVGALIAL Borrelia_burgdo YENKVMFEGF LLNINSFDQE GVQLGKIIAN QI Treponema_palli FENKIMFQGF AWNLNSFDQE GVQLGKTLAQ HI Chlamydia_pneum YENKIVFQGF CWGINSFDQE GVSLGKALAN RV Chlamydia_murid YEHKFAFQGF CWGINSFDQE GVSLGKELAT QI Plasmodium_falc YESRIVAEGF LLNINSFDQW GVELGKVLAK EV Toxoplasma_gond YEHRVAVEGW LWGINSFDQW GVELGKVLAK GV Spinacia_olerac YEHRVAVEGF VWGINSFDQW GVELGKSLAN QV 2Arabidopsis_th YEHRVAVQGF VWGINSFDQW GVELGKVLAT QV Clarkia_lewisii YEHRVAVQGF VWGINSFDQW GVELGKSLAT QV Zea_mays YEHRIAVQGF IWGINSFDQW GVELGKSLAS QV Cricetulus_gris YEHKIFVQGV IWDINSFDQW GVELGKQLAK NI Sus_scrofa YEHKIFVQGV IWDINSFDQW GVELGKQLAK KI Drosophila_mela YEHKIFVQGI IWDINSFDQW GVELGKQLAK AI Drosophila_yaku YEHKIFVQGI IWDINSFDQW GVELGKQLAK AI Escherichia_col YEHKIFTQGV ILNIFTFDQW GVELGKQLAN RI Haemophilus_inf YEHKIFVQGV IFNIFSFDQW GVELGKQLAN RI Kluyveromyces_l YEHVTFTEGR IWNINSFDQW GVELGKVLAK VI Schizosaccharom YEWVTFTEGA VWNINSFDQF GVELGKKLVK NV Leishmania_mexi YEHKVLVQGA IWGINSYDQW GVELGKVLAK SI Trypanosoma_bru YEHKVLVQGA IWGIDSYDQW GVELGKVLAK SI Helicobacter_py YEHKVFVQGV IWDINSFDQW GVELGKELAV PI Neisseria_menin YEHKTFVQGI IWGINSFDQW GVELGKQLAK TI Streptomyces_co YEHKVFVQGA IWNIDSFDQW GVELGKVLAK RV Deinococcus_rad YEHKVFVQGA VWDINSFDQW GVELGKVLAK KI Mycobacterium_t YEHQVFTEGV VWGIDSFDQW GVELGKTQAK AL Bartonella_hens YEHRIFVEGI LMNINSFDQW GVELGKELAN EL Mesorhizobium_l YEHRVFVEGT LFNINSFDQW GVELGKELAT GL Acinetobacter_c YEHKVFVQSV IWDINPFDQW GVEKGKEIAN DL Neisseria_menin YEHKTFVQGA IWNVNPFDQW GVEYGKQLAK TI Zymomonas_mobil YEHRTFTNGV LLGINSFDQF GVELGKEMAH AI Caulobacter_cre YEHKTFVEGV IWGINSFDQW GVELGKVMAN RI Spinacia_olerac YERAVGLYAS LVNINAYHQP GVEAGKKAAA EV 1Arabidopsis_th YERAVGLYAS IVNINAYHQP GVEAGKKAAA EV Synechocystis_s YERAVSFYGS LVNVNAYHQP GVEAGKKAAA SI ; End;