#NEXUS 

Begin trees;  [Treefile saved Mon Jan  7 18:04:27 2002]
[!
>Data file = /home/bjorn/bartonella/Glycolysis/Analysis15/Aldolase1/rednt.nex
>Heuristic search settings:
>  Optimality criterion = distance (minimum evolution)
>    Negative branch lengths allowed, but set to zero for tree-score calculation
>    Distance measure = HKY85
>    Proportion of sites assumed to be invariable = 0.2168; identical sites removed proportionally to
>      base frequencies estimated from all sites (distances represent mean number of substitutions
>      over all sites)
>    Rates (for variable sites) assumed to follow gamma distribution with shape parameter = 1.6818
>    265 characters are excluded
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 500
>    Starting seed = 719984262
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100
>  Zero-length branches not collapsed
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Heuristic search completed
>   Total number of rearrangements tried = 14733
>   Score of best tree(s) found = 3.34302
>   Number of trees retained = 1
>   Time used = <1 sec (CPU time = 0.80 sec)
]
	Translate
		1 Plasmodium_falciparum,
		2 Euglena_gracilis,
		3 Fragaria_x_ananassa,
		4 Persea_americana,
		5 Xenopus_laevis,
		6 Sphoeroides_nephelus,
		7 Gallus_gallus,
		8 Drosophila_melanogaster,
		9 Schistosoma_mansoni,
		10 Caenorhabditis_elegans,
		11 Galdieria_sulphuraria,
		12 Bartonella_henselae,
		13 Rhizobium_meliloti,
		14 Mesorhizobium_loti,
		15 Xylella_fastidiosa,
		16 Trypanosoma_brucei
		;
tree PAUP_1 = [&U] (1:0.308647,((2:0.285262,((11:0.231508,16:0.477287):0.065380,(((12:0.097073,13:0.161402):0.039199,14:0.146947):0.057617,15:0.267800):0.088763):0.056048):0.022863,(3:0.036398,4:0.064113):0.132116):0.011272,(((5:0.053311,6:0.061774):0.034798,7:0.118718):0.024128,((8:0.100021,9:0.156089):0.014742,10:0.173052):0.004359):0.052334);
End;