#NEXUS 

Begin trees;  [Treefile saved Thu Jan  3 15:06:13 2002]
[!
>Data file = /home/bjorn/bartonella/Glycolysis/Analysis14/Tpis3/rednt.nex
>Bootstrap method with heuristic search:
>  Number of bootstrap replicates = 500
>  Starting seed = 698992195
>  Optimality criterion = maximum parsimony
>    Character-status summary:
>      120 characters are excluded
>      Of the remaining 240 included characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        62 characters are constant
>        13 variable characters are parsimony-uninformative
>        Number of (included) parsimony-informative characters = 165
>    Gaps are treated as "missing"
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 10
>    Starting seed = 1701225316
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 100 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>   500 bootstrap replicates completed
>   Time used = 01:10:08 (CPU time = 00:18:53.5)
]
	Translate
		1 Homo_sapiens,
		2 Rattus_norvegic,
		3 Culex_tarsalis,
		4 Schistosoma_man,
		5 Caenorhabditis,
		6 cy_Oryza_sativa,
		7 cy_Secale_cerea,
		8 cy_Coptis_japon,
		9 cp_Spinacia_ole,
		10 cp_Fragaria_ana,
		11 cp_Secale_cerea,
		12 Emericella_nidu,
		13 Saccharomyces_c,
		14 Odontella_sinen,
		15 Achlya_bisexual,
		16 Trypanosoma_bru,
		17 Giardia_lamblia,
		18 Plasmodium_falc,
		19 Entamoeba_histo,
		20 Neisseria_menin,
		21 Rhizobium_etli,
		22 Bartonella_hens,
		23 Mesorhizobium_l,
		24 Xanthobacter_fl,
		25 Caulobacter_cre,
		26 Agrobacterium_r,
		27 Mycobacterium_l,
		28 Buchnera_aphidi,
		29 Escherichia_col,
		30 Pseudomonas_syr,
		31 Chlamydia_pneum,
		32 Chlamydia_trach,
		33 Aquifex_aeolicu,
		34 Synechocystis_s,
		35 Bacillus_stearo,
		36 Borrelia_burgdo,
		37 Mycoplasma_floc,
		38 Mycoplasma_geni
		;
tree PAUP_1 = [&U] (1,2,(3,4,5,(6,7,8)99,((9,11)54,10)97,12,13,(14,15)66,16,17,18,19,20,21,((22,23)76,24)70,25,26,27,(28,29)71,30,(31,32)89,33,34,35,36,37,38)100)0;
End;