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Mutations in APC, Kirsten-ras, and p53—alternative genetic pathways to colorectal cancer

Supporting information for Smith et al. (2002) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.122612899.

Table 5. PCR primers used for direct sequencing

Name of fragment

Sequence (5' 3')

Position (1)

p53 analysis

p532/3 FM13 Seq

tgt aaa acg acg gcc agt aga gag aat gtg aag cag cc

11531–11550

p53 2/3 RM13 Seq

cag gaa aca gct atg acc agc atc aaa tca tcc att gc

12039–12058

p53 4 FM13 Seq

tgt aaa acg acg gcc agt ctt cct gaa aac aac gtt ctg

11907–11927

p53 4 RM13 Seq

cag gaa aca gct atg acc gag atc aca cat taa gtg gg

12430–12450

p53 5 FM13 Seq

tgt aaa acg acg gcc agt cta gct cgc tag tgg gtt gc

12931–12950

p53 5 RM13 Seq

cag gaa aca gct atg acc cac tcg gat aag atg ctg ag

13312–13351

p53 6 FM13 Seq

tgt aaa acg acg gcc agt cca cca tga gcg ctg ctc ag

13210–13229

p53 6 RM13 Seq

cag gaa aca gct atg acc ccc tta gcc tcg taa gct tc

13599–13518

p537 FM13 Seq

tgt aaa acg acg gcc agt gcc tcc cct gct tgc cac ag

13930–13950

p53 7 RM13 Seq

cag gaa aca gct atg acc ggg agc agt aag gag att cc

14242–14261

p53 8/9 FM13 Seq

tgt aaa acg acg gcc agt acc tct taa cct gtg gct tc

14290–14309

p53 8/9 RM13 Seq

cag gaa aca gct atg acc tac aac cag gag cca ttg tc

14881–14900

p53 10 FM13 Seq

tgt aaa acg acg gcc agt gat ccg tca taa agt caa ac

17348–17397

p53 10 RM13 Seq

cag gaa aca gct atg acc tgg tta tag gat tca acc gg

17832–17851

p53 11 FM13 Seq

tgt aaa acg acg gcc agt ccc gtt gtc cca gcc tta gg

18492–18511

p53 11 RM13 Seq

cag gaa aca gct atg acc aca aaa cac cag tgc agg cc

18842–18861

APC analysis

APC A1 FM13 Seq

tgt aaa acg acg gcc agt ctt aaa tat tca gat gag cag ttg

3103–3126

APC A1 RM13 Seq

cag gaa aca gct atg acc cct gtg tcg tct gat tac atc c

3880–3901

APC A2 FM13 Seq

tgt aaa acg acg gcc agt caa aag gct gcc act tgc aaa g

3748–3769

APC A2 RM13 Seq

cag gaa aca gct atg acc caa gaa aat cca tct gga gta c

4502–4523

APC A3 FM13 Seq

tgt aaa acg acg gcc agt aaa ata aag cac cta ctg ctg

4379–4399

APC A3 RM13 Seq

cag gaa aca gct atg acc cag gta tgg tta cag atg agg

5132–5152

APC A1-2 FM13

tgt aaa acg acg gcc agt tga aga gaa acg tca tgt gg

3519–3538

APC A1-2 RM13

cag gaa aca gct atg acc gct ttg tgc ctg gct gat tc

4051–4070

APC A2-3 FM13

tgt aaa acg acg gcc agt gaa tca gcc agg cac aaa gc

4051–1070

APC A2-3 RM13

cag gaa aca gct atg acc ttt ctg cct ctt tct ctt gg

4662–4681

K-ras analysis

K-ras 12 FM13 Seq

tgt aaa acg acg gcc agt aca tgt tct aat ata gtc ac

 

K-ras 12 RM13 Seq

cag gaa aca gct atg acc cta ttg ttg gat cat att cg

 

K-ras 61 FM13 Seq

tgt aaa acg acg gcc agt tgt ttc tcc ctt ctc agg at

 

K-ras 61 RM13 Seq

cag gaa aca gct atg acc caa ttt aaa ccc acc tat aa