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The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

Supporting information for Eisen et al. (2002) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.132181499.

Table 3. Lineage-specific gene duplications in C. tepidum

ORF no.

Gene description

CT1421

2-vinyl bacteriochlorophyllide hydratase (bchF-1)

CT1776

2-vinyl bacteriochlorophyllide hydratase (bchF-2)

CT0800

Acetyl-CoA carboxylase, carboxyl transferase subunit alpha, putative

CT0980

ArsA ATPase family protein

CT1939

ArsA ATPase family protein

CT1945

ArsA ATPase family protein

CT0116

ArsA ATPase family protein

CT0348

ArsA ATPase family protein

CT1033

ATP synthase F1, beta subunit (atpD-1)

CT1610

Bacteriochlorophyll synthase, 34 kDa subunit (bchG-2)

CT1320

BchE/P-methylase family protein

CT1502

BchE/P-methylase family protein

CT1777

BchE/P-methylase family protein

CT0072

BchE/P-methylase family protein

CT1382

Chlorosome envelope protein I (csmI)

CT0651

Chlorosome envelope protein J (csmJ)

CT0652

Chlorosome envelope protein X (csmX)

CT0458

Conserved hypothetical protein

CT0483

Conserved hypothetical protein

CT0995

Conserved hypothetical protein

CT1076

Conserved hypothetical protein

CT1169

Conserved hypothetical protein

CT1170

Conserved hypothetical protein

CT1734

Conserved hypothetical protein

CT2051

Conserved hypothetical protein

CT2065

Conserved hypothetical protein

CT0167

Conserved hypothetical protein

CT0258

Conserved hypothetical protein

CT0413

Conserved hypothetical protein

CT1061

Conserved hypothetical protein

CT1931

Dihydroflavonol 4-reductase family

CT1260

Ferredoxin, 4Fe-4S

CT1261

Ferredoxin, 4Fe-4S

CT1736

Ferredoxin, 4Fe-4S

CT0409

Ferredoxin, 4Fe-4S

CT0168

Ferredoxin, 4Fe-4S, putative

CT0282

Glutamate synthase, small subunit, putative

CT0196

Glycosyl transferase

CT0224

Glycosyl transferase

CT0225

Glycosyl transferase

CT0226

Glycosyl transferase

CT0219

Glycosyl transferase

CT0644

Heat shock protein, Hsp20 family

CT1970

Heat shock protein, Hsp20 family

CT0067

Hemagglutinin-related protein

CT0068

Hemagglutinin-related protein

CT0428

Hypothetical protein

CT0439

Hypothetical protein

CT0440

Hypothetical protein

CT0441

Hypothetical protein

CT0442

Hypothetical protein

CT0471

Hypothetical protein

CT0482

Hypothetical protein

CT0489

Hypothetical protein

CT0537

Hypothetical protein

CT0880

Hypothetical protein

CT0882

Hypothetical protein

CT1218

Hypothetical protein

CT1335

Hypothetical protein

CT1482

Hypothetical protein

CT1483

Hypothetical protein

CT1569

Hypothetical protein

CT1571

Hypothetical protein

CT1679

Hypothetical protein

CT1745

Hypothetical protein

CT2148

Hypothetical protein

CT2198

Hypothetical protein

CT0060

Hypothetical protein

CT0143

Hypothetical protein

CT0395

Hypothetical protein

CT0425

Hypothetical protein

CT0426

Hypothetical protein

CT0410

Iron(III) ABC transporter, periplasmic iron-binding protein

CT0854

Iron-sulfur cluster-binding protein, gltD family

CT2247

Iron-sulfur cluster-binding protein, gltD family

CT1602

Lipoprotein releasing system (lolC)

CT1957

Magnesium-protoporphyrin methyltransferase (bchH-1)

CT1955

Magnesium-protoporphyrin methyltransferase (bchH-2)

CT1295

Magnesium-protoporphyrin methyltransferase (bchH-3)

CT1543

Molybdenum transport protein ModE (modE)

CT1765

Molybdenum-pterin-binding protein

CT1539

Nitrogenase molybdenum-iron protein, NifN subunit (nifN)

CT1145

NLP/P60 family protein

CT0097

NLP/P60 family protein

CT0687

Nudix family protein, MutT subfamily

CT0625

Nudix/MutT family protein

CT2144

Outer surface protein, putative

CT0918

Pentapeptide repeat family protein

CT2067

Pentapeptide repeat family protein

CT1632

Peptide ABC transporter, periplasmic peptide-binding protein

CT1420

Peptide ABC transporter, periplasmic peptide-binding protein, putative

CT0895

Phosphate ABC transporter, periplasmic phosphate-binding protein, putative

CT0896

Phosphate ABC transporter, periplasmic phosphate-binding protein, putative

CT0180

Phytoene dehydrogenase CrtD, putative

CT0887

Polyphosphate kinase (ppk-1)

CT1049

Polyphosphate kinase (ppk-2)

CT1754

Receptor, putative

CT0547

Rod shape-determining protein MreB (mreB-1)

CT1470

Rod shape-determining protein MreB (mreB-2)

CT0531

Sensor histidine kinase/response regulator

CT1396

Sensor histidine kinase/response regulator

CT1695

Sensor histidine kinase/response regulator

CT2060

Sensory box histidine kinase/response regulator

CT1015

Sulfide dehydrogenase, flavoprotein subunit (fccB-1)

CT2081

Sulfide dehydrogenase, flavoprotein subunit (fccB-2)

CT0852

Sulfite reductase, dissimilatory-type, alpha subunit (dsrA-1)

CT2249

Sulfite reductase, dissimilatory-type, alpha subunit (dsrA-2)

CT0851

Sulfite reductase, dissimilatory-type, gamma subunit (dsrC-1)

CT2250

Sulfite reductase, dissimilatory-type, gamma subunit (dsrC-2)

CT2233

Thiol:disulfide interchange protein, thioredoxin family protein

CT1023

Thiol:disulfide interchange protein, thioredoxin family protein

CT0446

Transposase

CT0518

Transposase

CT1925

Transposase

CT1530

Transposase, authentic frame shift

CT0229

Transposase, degenerate

CT0620

Transposase, internal deletion

CT1231

Transposase, internal deletion

CT0878

Transposase, internal deletion

CT2156

Transposase, putative

CT1028

Transposase, truncation

CT0703

Trans-sulfuration enzyme family protein

CT1763

Uroporphyrin-III C-methyltransferase

Genes were considered potentially duplicated in the Chlorobium tepidum evolutionary lineage if they had a better scoring match with another C. tepidum gene relative to any gene in all complete genome sequences.