Influence of the period-dependent circadian clock on diurnal, circadian, and aperiodic gene expression in Drosophilamelanogaster

Supporting information for Lin et al. (2002) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.132269699

Table 4.Comparison between results from the present study and those of three other Drosophila circadian microarray studies published recently (1–3)

Gene	y w LD A₀*^†	**y w DD A₀***	This study^‡	Claridge-Chang et al. 2001	McDonald & Rosbash 2001	*Ueda et al.* 2002**
CG5798	0.93	0.98
CG11891	0.86	0.97
CG10553	0.83	0.96
CG17386	0.95	0.95
CG11407	0.86	0.91
CG11796	0.77	0.91
CG10091	0.88	0.88
tim	0.93	0.87
Cyp4d21	0.91	0.85
Clk	0.85	0.83
Pdh	0.89	0.83
Slob	0.97	0.83
per	0.94	0.79
CG4962	0.89	0.79
vri	0.84	0.76
Ugt35b	0.78	0.75
CG7149	0.87	0.71
CG9497	0.90	0.67
Reg-2	0.80	0.67
puc	0.83	0.65
CG10237	0.80	0.97
amphiphysin	0.75	0.87
CG2121	0.96	0.37
ana	0.91	0.15
CG1441	0.92	0.26
CG12790	0.92	0.04
BcDNA:GH02712	0.91	0.39
CG3699	0.88	–0.45
cry	0.88	–0.02
CG13848	0.89	0.39
CG17100	0.84	0.30
CG11853	0.80	A/P filter
b	0.85	0.51
CG2827	0.85	–0.28
CG6070	0.75	0.26
CG10639	–0.07	0.93
Cyp6a20	0.01	0.90
Pdp1	0.42	0.89
Chd64	0.37	0.88
CG9377	0.68	0.87
CG18330	0.70	0.87
CG9990	0.63	0.86
BcDNA:LD21405	–0.26	0.85
vig	–0.54	0.85
CG6188	–0.74	0.85
Cyp305a1	–0.50	0.85
CG10513	0.60	0.84
CG9764	–0.09	0.84
CG4784	0.68	0.83
CG6151	–0.15	0.83
CG8034	0.19	0.80
Akap200	–0.65	0.80
CG14194	0.09	0.79
Cyp4p1	–0.72	0.78
CG11440	0.42	0.78
tim	0.71	0.78
CG5945	–0.52	0.77
CG12116	0.27	0.77
CG10746	–0.33	0.76
CG6166	0.02	0.75
Bap	–0.59	0.74
CG9645	–0.89	0.74
CG6409	0.56	0.73
CG10657	–0.38	0.73
CG3153	0.71	0.72
CG3823	0.55	0.72
CG10175	0.66	0.71
CG1552	–0.06	0.70
CG5284	–0.58	0.70
Cyp6a21	–0.03	0.70
CG8286	–0.37	0.69
CG3767	0.05	0.69
CG15694	0.51	0.68
CG6278	–0.37	0.68
CG14275	0.50	0.68
Nmdmc	–0.25	0.66
CG7096	0.74	0.65
CG3174	0.26	0.65
Cat	–0.51	0.64
CG18291	A/P filter	0.64
BcDNA:GH02901	0.49	0.63
CG17932	–0.50	0.63
CG9363	0.72	0.62
CG9507	–0.86	0.61
CG8889	0.76	0.59
CG1359	–0.38	0.58
CG9285	0.64	0.58
CG11275	0.63	0.57
CG11583	–0.69	0.57
CG7470	–0.19	0.56
CG1124	0.20	0.56
CG7079	0.12	0.56
Drip	0.22	0.56
CG17189	–0.02	0.55
Tpi	–0.94	0.55
Cp1	0.05	0.54
CG9451	0.17	0.54
Eip55E	–0.11	0.51
CG8036	–0.01	0.50
CG7176	0.57	0.50
CG1213	–0.49	0.50
CG9328	–0.19	0.49
Buffy	0.39	0.49
BcDNA:GH02435	–0.49	0.48
CG15828	–0.59	0.48
ush	–0.34	0.48
CG10611	–0.45	0.48
CG6755	–0.24	0.48
CG9649	–0.65	0.47
CG4468	0.71	0.47
CG11605	0.46	0.47
CG5165	–0.66	0.46
CG4779	0.69	0.44
CG6162	–0.25	0.44
CG15353	–0.23	0.43
CG13559	–0.74	0.42
mor	–0.79	0.42
CG12023	0.70	0.42
CG9331	–0.47	0.42
CG13928	0.02	0.40
CG18578	–0.35	0.40
B4	–0.46	0.40
CG12014	0.08	0.40
CG14403	0.14	0.39
CG15171	0.42	0.39
CG1696	–0.37	0.39
SP1173	0.57	0.39
CG6815	0.23	0.38
CG12991	0.43	0.38
CG10616	–0.59	0.38
CG9622	–0.58	0.38
CG10433	0.36	0.37
CH3	–0.78	0.37
CG15723	–0.46	0.34
CG6293	–0.64	0.34
CG8643	0.59	0.32
CG6043	–0.21	0.32
CG2765	0.50	0.32
CG17108	0.51	0.32
Cyp6a17	–0.78	0.31
CG7321	–0.40	0.31
Ldlr	–0.64	0.30
CG2277	0.34	0.30
ninaA	0.26	0.29
CG5390	–0.30	0.28
CG9705	0.22	0.28
Acer	0.04	0.27
EG:34F3.7	–0.69	0.25
CG17257	–0.75	0.24
CG9393	–0.42	0.24
CG11956	0.22	0.23
S6kII	A/P filter	0.23
Fdxh	0.01	0.23
CG18302	0.53	0.23
CG14742	0.18	0.22
CG4919	0.55	0.22
CG9699	0.03	0.22
msta	0.80	0.21
CG15236	0.40	0.21
CG15093	0.11	0.21
CG12855	–0.02	0.21
CG5618	–0.58	0.21
e	–0.75	0.20
crp	–0.02	0.20
CG8462	–0.92	0.20
Eaat1	0.37	0.20
Cct5	0.26	0.19
CG11594	–0.33	0.18
CG9914	0.50	0.17
CG7417	–0.92	0.17
CG6145	–0.63	0.16
CG1147	–0.34	0.16
CG10184	–0.23	0.16
flw	–0.41	0.15
CG13064	–0.32	0.15
Ugt35a	0.32	0.14
CG4049	–0.75	0.14
PebIII	–0.67	0.13
CG9485	–0.72	0.13
CG7322	0.51	0.12
CG11238	–0.22	0.11
CG4451	–0.34	0.10
CG17124	0.54	0.10
CG14329	A/P filter	0.10
Nsf2	–0.50	0.09
CG10799	–0.25	0.09
Sodh-1	–0.30	0.09
CG15162	0.66	0.08
CG5958	–0.18	0.08
BcDNA:GH03693	0.09	0.08
CG4250	–0.15	0.07
CG3364	–0.80	0.07
CG3021	–0.50	0.07
CG18003	0.20	0.06
CG10680	–0.67	0.06
CG3961	–0.34	0.05
Ahcy89E	0.63	0.05
Fdh	–0.03	0.04
CG8468	0.55	0.03
Rh5	–0.44	0.02
CG5273	–0.05	0.02
pn	–0.59	0.02
CG8417	0.31	0.01
ATPCL	0.38	0.01
CG7724	0.24	–0.00
KdelR	0.07	–0.01
ap	–0.54	–0.02
CG15390	–0.60	–0.03
CG11425	–0.18	–0.03
CG12397	–0.38	–0.04
CG2190	–0.78	–0.04
5-HT2	0.39	–0.05
CG3495	0.07	–0.05
CG4684	–0.33	–0.05
loco	–0.46	–0.08
CG6074	–0.56	–0.08
Cpr	–0.46	–0.09
CG17572	0.59	–0.10
36770	–0.88	–0.10
CG11915	–0.65	–0.10
CG6459	–0.80	–0.11
Cnx99A	0.42	–0.11
CG6126	0.65	–0.12
CG8550	–0.14	–0.12
myo-inositol-1-phosphate-synthase	–0.40	–0.13
rost	0.31	–0.14
CG9886	–0.44	–0.15
CG4963	–0.39	–0.18
CG8628	–0.80	–0.18
CG5896	–0.29	–0.19
ea	–0.67	–0.20
CG1673	–0.34	–0.20
CG2103	–0.20	–0.20
CG3066	–0.34	–0.20
CG6926	–0.42	–0.20
CG17524	–0.16	–0.21
CG6125	–0.38	–0.21
CG13435	0.09	–0.21
Ser99Da	–0.51	–0.22
timp	0.67	–0.22
CG13631	0.77	–0.22
CG5853	–0.02	–0.23
CG1583	–0.18	–0.24
CG17777	0.10	–0.25
CG4847	0.19	–0.25
CG8468	–0.51	–0.25
Zw	–0.10	–0.27
CG3672	–0.68	–0.28
BG:DS09218.4	–0.71	–0.28
CG6178	–0.43	–0.29
CG12910	–0.07	–0.30
CG3451	–0.89	–0.30
rux	–0.33	–0.30
CG18111	–0.52	–0.31
Uch	–0.12	–0.31
CG10253	0.03	–0.35
ple	A/P filter	–0.35
prod	A/P filter	–0.35
BcDNA:GH08420	0.08	–0.36
CG9232	0.53	–0.37
CG8993	0.29	–0.38
CG13101	0.25	–0.38
EG:25E8.2	–0.66	–0.38
CG9701	0.55	–0.38
CG13610	–0.20	–0.39
CG7224	–0.44	–0.40
CG6309	0.78	–0.40
trpl	0.68	–0.42
pll	–0.78	–0.44
CG2049	–0.64	–0.45
smp-30	0.66	–0.46
mew	–0.18	–0.46
CG4572	–0.63	–0.48
CG12016	–0.05	–0.48
CG15668	–0.23	–0.49
CG3618	0.06	–0.49
Rab-RP1	0.51	–0.50
CG17111	–0.30	–0.51
CG17211	0.30	–0.52
EG:22E5.12	–0.29	–0.53
CG9066	–0.77	–0.53
Cyp18a1	0.24	–0.55
CG4548	–0.06	–0.60
CG18607	–0.50	–0.61
CG15335	0.20	–0.62
CG11045	–0.98	–0.62
Fps85D	0.07	–0.63
CG9953	–0.80	–0.66
CG8147	–0.68	–0.67
CG5156	0.61	–0.69
CG5181	–0.03	–0.69
CG6218	0.57	–0.70
CG3252	0.25	–0.71
CG10947	A/P filter	–0.76
CG5446	–0.69	–0.79
CG6659	0.58	–0.85
methyl-CpG-binding-domain-like-protein	–0.56	A/P filter
DebB	0.25	A/P filter
CG7054	–0.94	A/P filter
CG6888	–0.54	A/P filter
CG13489	–0.45	A/P filter
Hsp26	–0.43	A/P filter
CG7828	–0.29	A/P filter
CG11852	0.25	A/P filter
CG10514	–0.48	A/P filter
CG5147	–0.83	A/P filter
CG5566	A/P filter	A/P filter
CG2069	A/P filter	A/P filter
CG10516	A/P filter	A/P filter
CG14279	A/P filter	A/P filter
CG13856	A/P filter	A/P filter
CG16796	A/P filter	A/P filter
CG11854	A/P filter	A/P filter
CG8300	A/P filter	A/P filter
CG7288	A/P filter	A/P filter
CG14191	A/P filter	A/P filter
CG8782	A/P filter	A/P filter
CG15240	A/P filter	A/P filter
CG4723	A/P filter	A/P filter
CG15213	A/P filter	A/P filter
CG3348	A/P filter	A/P filter
CG13936	A/P filter	A/P filter
CG11531	A/P filter	A/P filter
TpnC47D	A/P filter	A/P filter
CG14239	A/P filter	A/P filter
CG8136	A/P filter	A/P filter
CG2555	A/P filter	A/P filter
CG7729	A/P filter	A/P filter
5-HT1A	A/P filter	A/P filter
CG8010	A/P filter	A/P filter
CG11713	A/P filter	A/P filter
CG13305	A/P filter	A/P filter
CG13738	A/P filter	A/P filter
CG5091	A/P filter	A/P filter
CG11889	A/P filter	A/P filter
Cry	A/P filter	A/P filter
CG9119	A/P filter	A/P filter
CG15632	A/P filter	A/P filter
CG11902	A/P filter	A/P filter
CG15447	A/P filter	A/P filter

Genes are listed if they were identified by any of the three studies as circadian. A₀ values reported here are derived from results of the present study only. LD, light-dark; DD, dark-dark.

*Data from this study.
^†Minimum A₀ values from pairwise comparisons of three cycles, control LD data
^‡Identified by this study as rhythmic: in both y w LD and y w DD; in y w LD only.

1. Claridge-Chang, A., Wijnen, H., Naef, F., Boothroyd, C., Rajewsky, N. & Young, M. W. (2001) Neuron 32, 657–671.

2. McDonald, M. J. & Rosbash, M. (2001) Cell107, 567–578.

3. Ueda, H. R., Matsumoto, A., Kawamura, M., Iino, M., Tanimura, T. & Hashimoto, S. (2002) J. Biol. Chem., published February 19, 2002 online as 10.1074/jbc.C100765200.

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Published online before print June 27, 2002, doi: 10.1073/pnas.132269699 PNAS July 9, 2002 vol. 99 no. 14 9562-9567

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