Supporting information for Levenberg et al. (March 26, 2002) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.032074999.
Supporting Materials and Methods
Reverse Transcription (RT)-PCR Conditions
RT and activation: 30°C for 30 min, 95°C for 15 min.
Amplification: 94°C for 1 min, 55°C for 1 min, 72°C for 1 min. See below for cycle numbers.
Final extension: 72°C for 10 min.
Optimal Cycle Numbers
Optimal cycle numbers were determined for each gene to ensure that conditions were in the linear range of PCR amplification:
PECAM1: 28 cycles
VE-cad: 32 cycles
CD34: 30 cycles
Flk-1: 31 cycles
Tie-2: 31 cycles
GATA-2: 33 cycles
GATA-3: 29 cycles
AC133: 27 cycles
OCT-4: 31 cycles
GAPDH: 24 cycles
Primer Sequences
PECAM1: GCTGTTGGTGGAAGGAGTGC / GAAGTTGGCTGGAGGTGCTC
VE-cad: CCGGCGCCAAAAGAGAGA / CTGGTTTTCCTTCAGCTGGAAGTGGT
CD34: TGAAGCCTAGCCTGTCACCT / CGCACAGCTGGAGGTCTTAT
Flk-1: CAACAAAGCGGAGAGGAG / ATGACGATGGACAAGTACCC
Tie-2: CCTTAGTGACATTCTTCC / GCAAAAATGTCCACCTGG
GATA-2: CCCTAAGCAGCGCAGCAAGAC / TGACTTCTCCTGCATGCACT
GATA-3: ACCCCACTGTGGCGGCGAGAT / CACAGCACTAGAGACC
AC133: CAGTCTGACCAGCGTGAAAA / GGCCATCCAAATCTGTCCTA
OCT-4: GAGAACAATGAGAACCTTCAGGAGA / TTCTGGCGCCGGTTACAGAACCA
GAPDH: AGCCACATCGCTCAGACACC / GTACTCAGCGGCCAGCATCG