|
Table S32: Characteristics of the 5 RMP-specific intersyntenic genes. A list of 5 RMP-specific genes
located in indels between SBs (intersyntenic genes). Proteins
with a TM domain in the first 100 amino acids (TM-N) are considered proteins potentially
targeted to the surface membrane of the parasite or erythrocyte (1 of 5 genes
marked with an asterisk). |
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|
RMP chr |
Pb gene |
Pb contig |
Pc gene |
Pc contig |
Py gene |
Py contig |
Product |
Size (aa) |
SP |
AP |
TM-N |
TM |
|
5 |
c-rrna
gene unit |
Contig5161 |
c-rrna
gene unit |
Contig4882 |
c-rrna
gene unit |
MALPY00527 |
28S, 5.8S,
18S rRNA |
- |
- |
- |
- |
- |
|
6 |
PB101816.00.0 |
Pb.Contig31 |
PC404234.00.0 |
Pch1282h06.q1k
UNCHAB.0.29007 |
not annotated |
MALPY02445 |
hypothetical
protein |
203 |
- |
X |
- |
- |
|
10 |
not annotated |
Pb.Contig126 |
not annotated |
Pch1539b06.q1k
UNCHAB.0.23105 |
PY02305 |
MALPY00633 |
hypothetical
protein |
46 |
- |
- |
- |
- |
|
12 |
NI |
Pb.c001702793. Contig1 |
NI |
no contig |
PY01538 |
MALPY00409 |
hypothetical
protein |
73 |
- |
- |
- |
- |
|
12 * |
PB108348.00.0
- PB000847.03.0 |
Pb.c000301471. Contig1.0/1 |
not annotated |
Pc.Contig140 |
PY01786 |
MALPY00483 |
dentin
phosphoryn, putative |
965 |
- |
- |
X |
X |
|
Abbreviations:
RMP, rodent malaria parasites; SB, synteny block; chr,
chromosome; Pb, P. berghei; Pc, P. chabaudi; Py, P. yoelii;
aa, amino acids; SP, predicted signal peptide; AP,
predicted apicoplast transit peptide; TM, transmembrane domain; TM-N,
N-terminal TM-domain; NI, not identified. |
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