Date:		2005/06/24
Method:		Fisher test
Cut off P-value:		0.05
Target dataset(s):		Chromosome:5 Chromosome:3 Chromosome:4 Chromosome:1 Chromosome:2
Query dataset(s):		SOM Cluster
3_20040001_20070000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL08-12-E04	At3g54110 / uncoupling protein (ucp/PUMP)		At3g54110 ,RAFL08-12-E04 plant uncoupling mitochondrial protein (PUMP) identical to plant uncoupling mitochondrial protein [Arabidopsis thaliana] GI:3115108
5_26340001_26370000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-11-J12	At5g66760 / succinate dehydrogenase (ubiquinone), putative		RAFL09-11-J12 ,At5g66760 succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II identical to SP|O82663 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II) {Arabidopsis thaliana}
3_2460001_2490000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL04-16-E03	At3g07790 / expressed protein		RAFL04-16-E03 ,At3g07790 DGCR14-related similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot:Q96DF8) [Homo sapiens]
		RAFL08-16-C13	At3g07780 / expressed protein		RAFL08-16-C13 ,At3g07780 expressed protein
5_5520001_5550000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-12-I17	At5g16840 / RRM-containing protein		At5g16840 ,RAFL06-12-I17 RNA recognition motif (RRM)-containing protein predicted proteins - Arabidopsis thaliana
2_12360001_12390000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	0	4416	0.002795081	0.002795081	1
		RAFL07-14-N08	At2g28910 / expressed protein		At2g28910 ,RAFL07-14-N08 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
		RAFL08-16-B05	At2g28910 / expressed protein		At2g28910 ,RAFL08-16-B05 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
5_26220001_26250000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	2	4629	0.020451	0.061353	3
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
4_13830001_13860000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-12-N20	At4g30470 / cinnamoyl-CoA reductase-related		RAFL05-12-N20 ,At4g30470 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Saccharum officinarum [GI:3341511]
4_900001_1200000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	15	4616	0.005819355	0.075651616	13
		RAFL08-10-G22	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		RAFL08-10-G22 ,At4g02280 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
		RAFL05-18-M07	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At4g02280 ,RAFL05-18-M07 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
	Cluster:10-1				2	41	15	4605	0.01034811	0.13452543	13
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
2_12150001_12180000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-11-H19	At2g28550 / AP2 domain transcription factor RAP2.7		RAFL08-11-H19 ,At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI:2281639) [Arabidopsis thaliana]
4_7170001_7200000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-13-K22	At4g14300 / heterogeneous nuclear ribonucleoprotein (hnRNP), putative		At4g14300 ,RAFL05-13-K22 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative
5_10950001_10980000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-18-K01	At5g29000 / expressed protein		At5g29000 ,RAFL05-18-K01 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
2_15360001_15390000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-18-H16	At2g36780 / UDP-glycosyltransferase family		At2g36780 ,RAFL05-18-H16 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
4_17430001_17460000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL09-15-K07	At4g39800 / myo-inositol-1-phosphate synthase		At4g39800 ,RAFL09-15-K07 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
		RAFL09-14-L01	At4g39800 / myo-inositol-1-phosphate synthase		RAFL09-14-L01 ,At4g39800 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
3_18420001_18450000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-09-J08	At3g49720 / expressed protein		RAFL06-09-J08 ,At3g49720 expressed protein
1_2460001_2490000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-08-O03	At1g07940 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-08-O03 ,At1g07940 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
3_17820001_17850000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-14-I05	At3g48200 / expressed protein		At3g48200 ,RAFL04-14-I05 expressed protein
3_19560001_19590000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A20	At3g52800 / zinc finger - like protein		At3g52800 ,RAFL04-17-A20 zinc finger (AN1-like) family protein contains Pfam domain, PF01428: AN1-like Zinc finger
4_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-15-N09	At4g04020 / plastid-lipid associated protein PAP/fibrillin, putative		RAFL07-15-N09 ,At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from [Brassica rapa], fibrillin [Brassica napus] GI:4139097; contains Pfam profile PF04755: PAP_fibrillin
Chromosome:4					A	B	C	D	P	P'	N
	Cluster:8-1				33	129	599	3902	0.0137234	0.45287222	33
		RAFL08-18-B11	At4g36990 / heat shock transcription factor 4 (HSF4)		RAFL08-18-B11 ,At4g36990 heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) identical to heat shock transcription factor 4 (HSF4) SP:Q96320 from [Arabidopsis thaliana]
		RAFL05-14-K07	At4g27680 / expressed protein		RAFL05-14-K07 ,At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family
		RAFL07-10-J07	At4g31550 / WRKY family transcription factor		RAFL07-10-J07 ,At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain
		RAFL09-17-E21	At4g19410 / pectinacetylesterase, putative		RAFL09-17-E21 ,At4g19410 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL09-10-G07	At4g18950 / protein kinase - like protein		At4g18950 ,RAFL09-10-G07 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674
		RAFL05-08-J06	At4g19640 / GTP-binding protein, putative		At4g19640 ,RAFL05-08-J06 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI:1370178 from [Lotus japonicus]
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-11-C11	At4g12040 / expressed protein		RAFL09-11-C11 ,At4g12040 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL11-02-D14	At4g36730 / G-box-binding factor 1		At4g36730 ,RAFL11-02-D14 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor
		RAFL09-14-I01	At4g33920 / expressed protein		At4g33920 ,RAFL09-14-I01 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL08-09-D17	At4g11220 / expressed protein		At4g11220 ,RAFL08-09-D17 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL04-12-D15	At4g38360 / expressed protein		RAFL04-12-D15 ,At4g38360 expressed protein contains Pfam profile PF03619: Domain of unknown function
		RAFL02-09-C13	At4g28240 / wound induced protein -related		At4g28240 ,RAFL02-09-C13 wound-responsive protein-related wound-induced protein - tomato (fragment), PIR2:S19773
		RAFL04-12-N22	At4g25170 / expressed protein		At4g25170 ,RAFL04-12-N22 expressed protein
		RAFL05-07-L01	At4g24400 / CBL-interacting protein kinase 8		RAFL05-07-L01 ,At4g24400 CBL-interacting protein kinase 8 (CIPK8) identical to CBL-interacting protein kinase 8 [Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
		RAFL08-18-J23	At4g25650 / Rieske (2Fe-2S) domain-containing protein		RAFL08-18-J23 ,At4g25650 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain
		RAFL09-12-B15	At4g30600 / signal recognition particle receptor-related protein		At4g30600 ,RAFL09-12-B15 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL05-18-A07	At4g27500 / proton pump interactor		RAFL05-18-A07 ,At4g27500 expressed protein non-consensus GA donor splice site at exon 6
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-14-J24	At4g26750 / proline-rich protein family		RAFL05-14-J24 ,At4g26750 hydroxyproline-rich glycoprotein family protein
		RAFL11-01-P18	At4g31770 / calcineurin-like phosphoesterase family		At4g31770 ,RAFL11-01-P18 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
4_5100001_5130000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL06-16-C13	At4g09760 / choline kinase GmCK2p -related protein		At4g09760 ,RAFL06-16-C13 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375
5_21540001_21570000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-19-N02	At5g53800 / expressed protein		At5g53800 ,RAFL05-19-N02 expressed protein
2_7770001_7800000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-20-P13	At2g18050 / histone H1		RAFL05-20-P13 ,At2g18050 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305
4_10770001_10800000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-20-J03	At4g22380 / Ribosomal protein L7Ae family		At4g22380 ,RAFL04-20-J03 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
5_16140001_16170000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
1_18000001_21000000					A	B	C	D	P	P'	N
	Cluster:0-2				9	70	115	4469	2.1293285E-4	0.006387986	30
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	Cluster:0-1				9	97	115	4442	0.0018587124	0.05576137	30
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-07-I23	At1g56190 / phosphoglycerate kinase -related		RAFL07-07-I23 ,At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	Cluster:10-0				4	20	120	4519	0.0033508611	0.10052583	30
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	Cluster:9-0				4	28	120	4511	0.00962857	0.2888571	30
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
1_6930001_6960000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-11-P11	At1g20010 / tubulin beta-5 chain (TUB5)		RAFL09-11-P11 ,At1g20010 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana}
2_270001_300000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-10-E23	At2g01660 / expressed protein		At2g01660 ,RAFL06-10-E23 33 kDa secretory protein-related contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins
4_5400001_5700000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	4	4426	0.032636177	0.1305447	4
		RAFL08-18-K16	At4g10480 / alpha NAC -related		RAFL08-18-K16 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
		RAFL05-12-D01	At4g10480 / alpha NAC -related		RAFL05-12-D01 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
	Cluster:2-1				2	242	4	4415	0.0355681	0.1422724	4
		RAFL04-13-M20	At4g11010 / nucleoside diphosphate kinase 3 (ndpk3)		At4g11010 ,RAFL04-13-M20 nucleoside diphosphate kinase 3, mitochondrial (NDK3) identical to Nucleoside diphosphate kinase III, mitochondrial precursor (NDK III) (NDP kinase III) (NDPK III) (SP:O49203) [Arabidopsis thaliana]; contains Pfam PF00334 : Nucleoside diphosphate kinase domain;
		RAFL05-21-M05	At4g10480 / alpha NAC -related		At4g10480 ,RAFL05-21-M05 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
2_17820001_17850000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-I08	At2g43020 / amine oxidase family		At2g43020 ,RAFL05-17-I08 amine oxidase family protein similar to polyamine oxidase SP:O64411 [Zea mays]; contains Pfam profile PF01593 amine oxidase, flavin-containing
5_7440001_7470000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-17-P13	At5g22500 / male sterility 2-related protein (emb|CAA68191.1)		At5g22500 ,RAFL09-17-P13 acyl CoA reductase, putative / male-sterility protein, putative similar to acyl CoA reductase [Simmondsia chinensis] GI:5020215; contains Pfam profile PF03015: Male sterility protein; identical to cDNA male sterility 2-like protein GI:1491614
2_12570001_12600000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	3	4628	0.027177518	0.10871007	4
		RAFL04-17-K13	At2g29460 / glutathione transferase, putative		RAFL04-17-K13 ,At2g29460 glutathione S-transferase, putative
5_23250001_23280000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL06-11-B13	At5g58250 / unknown protein (sp|P72777) -related		At5g58250 ,RAFL06-11-B13 expressed protein
3_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:1-0				13	136	172	4342	0.007977094	0.255267	32
		RAFL06-08-E07	At3g11630 / 2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein) -related		At3g11630 ,RAFL06-08-E07 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL09-11-D17	At3g12780 / phosphoglycerate kinase -related		RAFL09-11-D17 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL06-16-H23	At3g15030 / TCP family transcription factor, putative		At3g15030 ,RAFL06-16-H23 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-01-K06	At3g11170 / omega-3 fatty acid desaturase, chloroplast precursor (FAD7)		RAFL05-01-K06 ,At3g11170 omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD) identical to omega-3 fatty acid desaturase, chloroplast precursor SP:P46310 [Arabidopsis thaliana (Mouse-ear cress)]; identical to Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI:809491
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL08-11-A20	At3g15850 / fatty acid desaturase family protein		RAFL08-11-A20 ,At3g15850 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana]
		RAFL09-09-J21	At3g11700 / expressed protein		RAFL09-09-J21 ,At3g11700 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein contains Pfam profile PF02469: Fasciclin domain
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-04-C24	At3g13120 / chloroplast 30S ribosomal protein S10, putative		At3g13120 ,RAFL05-04-C24 30S ribosomal protein S10, chloroplast, putative similar to 30S ribosomal protein S10 GB:P02364 [Escherichia coli] (est matches suggest the N-terminal extension)
		RAFL04-09-O21	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-09-O21 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
		RAFL04-20-A09	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-20-A09 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
5_26100001_26400000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	19	4612	0.008833496	0.12366895	14
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
		RAFL08-10-E21	At5g66780 / expressed protein		At5g66780 ,RAFL08-10-E21 expressed protein
	Cluster:4-0				4	236	17	4406	0.020494834	0.28692767	14
		RAFL04-20-L08	At5g66040 / senescence-associated protein		RAFL04-20-L08 ,At5g66040 senescence-associated family protein almost identical to ketoconazole resistant protein GI:928938 from [Arabidopsis thaliana] full-length cDNA: Ceres:101608.
		RAFL08-08-F13	At5g66055 / expressed protein		At5g66055 ,RAFL08-08-F13 ankyrin repeat protein / AKRP (AKR) identical to ankyrin repeat protein (AKRP) [Arabidopsis thaliana] SWISS-PROT:Q05753
		RAFL06-10-I09	At5g66290 / hypothetical protein		RAFL06-10-I09 ,At5g66290 expressed protein
		RAFL04-20-B17	At5g66590 / pathogenesis-related protein family		RAFL04-20-B17 ,At5g66590 allergen V5/Tpx-1-related family protein contains similarity to SP|Q41495 STS14 protein precursor {Solanum tuberosum}; contains Pfam profile PF00188: SCP-like extracellular protein
5_18120001_18150000					A	B	C	D	P	P'	N
	Cluster:5-0				2	75	0	4586	2.6919477E-4	2.6919477E-4	1
		RAFL07-11-O11	At5g45430 / protein kinase, putative		At5g45430 ,RAFL07-11-O11 protein kinase, putative contains similarity to male germ cell-associated kinase [Homo sapiens] gi|23268497|gb|AAN16405
		RAFL07-18-J19	At5g45500 / expressed protein		At5g45500 ,RAFL07-18-J19 expressed protein weak similarity to resistance complex protein I2C-2 [Lycopersicon esculentum] GI:2258317
5_20460001_20490000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	0	4567	4.1952432E-4	4.1952432E-4	1
		RAFL09-15-D15	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL09-15-D15 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
		RAFL05-05-I08	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL05-05-I08 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
4_11970001_12000000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-10-E08	At4g25500 / arginine/serine-rich splicing factor RSp40		At4g25500 ,RAFL04-10-E08 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana}
1_27900001_27930000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-15-A17	At1g75350 / chloroplast 50S ribosomal protein L31 -related		RAFL04-15-A17 ,At1g75350 ribosomal protein L31 family protein similar to SP:O46917 from [Guillardia theta]
3_17340001_17370000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-15-K17	At3g47070 / expressed protein		At3g47070 ,RAFL04-15-K17 expressed protein
1_23280001_23310000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
5_14010001_14040000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-14-E07	At5g36290 / transmembrane protein FT27/PFT27-related		At5g36290 ,RAFL07-14-E07 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016
5_5070001_5100000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL05-02-G21	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL05-02-G21 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
		RAFL11-05-M03	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL11-05-M03 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
1_28620001_28650000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL07-16-P10	At1g77120 / alcohol dehydrogenase (ADH)		RAFL07-16-P10 ,At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana)
2_15720001_15750000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-16-P06	At2g37660 / expressed protein		At2g37660 ,RAFL04-16-P06 expressed protein
1_28860001_28890000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL09-07-M15	At1g77760 / nitrate reductase 1 (NR1)		RAFL09-07-M15 ,At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana}
5_4200001_4230000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H19	At5g13190 / expressed protein		RAFL05-07-H19 ,At5g13190 expressed protein
4_15510001_15540000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	5	4591	0.004077173	0.024463037	6
		RAFL08-11-N01	At4g34710 / arginine decarboxylase SPE2		At4g34710 ,RAFL08-11-N01 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
		RAFL09-13-D07	At4g34710 / arginine decarboxylase SPE2		RAFL09-13-D07 ,At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
4_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:1-0				9	140	86	4428	0.0030741743	0.079928525	26
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL05-17-O20	At4g12030 / bile acid:sodium symporter family		RAFL05-17-O20 ,At4g12030 bile acid:sodium symporter family protein low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family
		RAFL04-17-B18	At4g13840 / transferase family		RAFL04-17-B18 ,At4g13840 transferase family protein low similarity to acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna] GI:6166328; contains Pfam profile PF02458: Transferase family
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL11-07-D18	At4g16370 / isp4 like protein		At4g16370 ,RAFL11-07-D18 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	Cluster:1-2				9	165	86	4403	0.00847757	0.22041681	26
		RAFL04-16-C09	At4g17520 / nuclear RNA binding protein, putative		RAFL04-16-C09 ,At4g17520 nuclear RNA-binding protein, putative similar to nuclear RNA binding protein GI:6492264 from [Arabidopsis thaliana]
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,RAFL09-11-K06 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-14-M21	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-14-M21 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-09-I24	At4g15540 / nodulin MtN21 - related		At4g15540 ,RAFL04-09-I24 nodulin-related low similarity to MtN21 [Medicago truncatula] GI:2598575
		RAFL05-01-M18	At4g13510 / ammonium transport protein (AMT1)		RAFL05-01-M18 ,At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1;1) {Arabidopsis thaliana}
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
3_5940001_5970000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
4_14850001_14880000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-09-J06	At4g32940 / gamma-VPE (vacuolar processing enzyme)		RAFL05-09-J06 ,At4g32940 vacuolar processing enzyme gamma / gamma-VPE nearly identical to SP|Q39119 Vacuolar processing enzyme, gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) {Arabidopsis thaliana}
5_360001_390000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL06-12-H12	At5g02020 / expressed protein		At5g02020 ,RAFL06-12-H12 expressed protein
4_4590001_4620000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-18-H22	At4g08870 / arginase -related		At4g08870 ,RAFL05-18-H22 arginase, putative similar to Swiss-Prot:P46637 arginase (EC 3.5.3.1) [Arabidopsis thaliana]
5_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-09-L14	At5g22580 / expressed protein		RAFL04-09-L14 ,At5g22580 expressed protein
5_25590001_25620000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-09-M07	At5g64740 / cellulose synthase, catalytic subunit, putative		RAFL05-09-M07 ,At5g64740 cellulose synthase, catalytic subunit, putative similar to gi:2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis thaliana
2_1710001_1740000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-09-E11	At2g04900 / expressed protein		At2g04900 ,RAFL06-09-E11 expressed protein
4_10380001_10410000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-07-E08	At4g21440 / myb family protein		At4g21440 ,RAFL09-07-E08 myb family transcription factor (MYB102) contains Pfam profile: PF00249 myb-like DNA-binding domain
1_21690001_21720000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-A17	At1g59900 / pyruvate dehydrogenase e1 alpha subunit -related		At1g59900 ,RAFL09-17-A17 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A) identical to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana}
3_15780001_15810000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL02-10-H10	At3g43980 / 40S ribosomal protein S29 (RPS29A)		At3g43980 ,RAFL02-10-H10 40S ribosomal protein S29 (RPS29A) ribosomal protein S29, rat, PIR:S30298
3_17460001_17490000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-17-P09	At3g47430 / expressed protein		At3g47430 ,RAFL04-17-P09 peroxisomal biogenesis factor 11 family protein / PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11)
1_3060001_3090000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	1	4630	1.3631E-4	2.7262E-4	2
		RAFL06-15-H16	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL06-15-H16 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
		RAFL05-18-A06	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL05-18-A06 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
3_4350001_4380000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	1	4347	0.013038642	0.026077284	2
		RAFL05-05-P01	At3g13410 / expressed protein		At3g13410 ,RAFL05-05-P01 expressed protein
		RAFL05-10-K07	At3g13445 / transcription initiation factor TFIID-1 (TATA sequence-binding protein 1)		RAFL05-10-K07 ,At3g13445 transcription initiation factor IID-1 (TFIID-1) / TATA-box factor 1 / TATA sequence-binding protein 1 (TBP1) identical to Swiss-Prot:P28147 transcription initiation factor TFIID-1 (TATA-box factor 1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis thaliana]
4_13470001_13500000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-02-E04	At4g29590 / expressed protein		At4g29590 ,RAFL05-02-E04 expressed protein
2_16050001_16080000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-07-J20	At2g38530 / nonspecific lipid transfer protein 2 (LTP 2)		RAFL06-07-J20 ,At2g38530 nonspecific lipid transfer protein 2 (LTP2) identical to nonspecific lipid-transfer protein 2 from Arabidopsis thaliana [SP|Q9S7I3]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
3_4710001_4740000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL09-06-D04	At3g14210 / myrosinase-associated protein, putative		RAFL09-06-D04 ,At3g14210 myrosinase-associated protein, putative similar to GB:CAA71238 from [Brassica napus]; contains Pfam profile:PF00657 Lipase/Acylhydrolase with GDSL-like motif
1_18450001_18480000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
3_20700001_20730000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-12-O19	At3g55800 / sedoheptulose-bisphosphatase precursor		At3g55800 ,RAFL05-12-O19 sedoheptulose-1,7-bisphosphatase, chloroplast / sedoheptulose-bisphosphatase identical to SP|P46283 Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana}
5_21420001_21450000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-18-D08	At5g53490 / thylakoid lumenal 17.4 kD pentapeptide repeat family protein, chloroplast precursor		At5g53490 ,RAFL04-18-D08 thylakoid lumenal 17.4 kDa protein, chloroplast identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}
1_10710001_10740000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	2	4597	0.0010932032	0.0032796096	3
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
5_7830001_7860000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-09-I02	At5g23340 / expressed protein		At5g23340 ,RAFL05-09-I02 expressed protein
5_16590001_16620000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-04-D03	At5g42270 / FtsH protease, putative		RAFL05-04-D03 ,At5g42270 FtsH protease, putative similar to FtsH protease GI:13183728 from [Medicago sativa]
2_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:5-0				2	75	6	4580	0.00706652	0.04239912	6
		RAFL04-14-C14	At2g05100 / light-harvesting chlorophyll a/b binding protein		RAFL04-14-C14 ,At2g05100 chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-01-K24	At2g05620 / expressed protein		RAFL05-01-K24 ,At2g05620 expressed protein
5_2910001_2940000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-I05	At5g09440 / expressed protein		At5g09440 ,RAFL06-07-I05 phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region
2_11100001_11400000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	11	4543	0.035702586	0.35702586	10
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
		RAFL06-10-M04	At2g26800 / hydroxymethylglutaryl-CoA lyase -related		At2g26800 ,RAFL06-10-M04 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to SP|P35915 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA lyase) {Gallus gallus}; contains Pfam profile PF00682: HMGL-like
2_13590001_13620000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-09-E18	At2g32090 / glyoxalase family protein (lactoylglutathione lyase family protein)		RAFL09-09-E18 ,At2g32090 lactoylglutathione lyase family protein / glyoxalase I family protein contains glyoxalase family protein domain, Pfam:PF00903
1_25080001_25110000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-04-I18	At1g67850 / F12A21.2		RAFL05-04-I18 ,At1g67850 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707)
5_630001_660000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	4	4509	0.014161414	0.056645654	4
		RAFL07-14-H10	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-H10 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL11-13-A04	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL11-13-A04 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
	Cluster:2-1				2	242	4	4415	0.0355681	0.1422724	4
		RAFL07-14-M14	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-M14 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL09-12-B05	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL09-12-B05 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
5_22200001_22500000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	7	4579	7.7957714E-7	6.236617E-6	8
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
1_24630001_24660000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-12-I20	At1g66970 / expressed protein		At1g66970 ,RAFL06-12-I20 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009 : Glycerophosphoryl diester phosphodiesterase family
2_11190001_11220000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL05-03-B18	At2g26500 / expressed protein		RAFL05-03-B18 ,At2g26500 cytochrome b6f complex subunit (petM), putative nearly identical to cytochrome b6f complex subunit (GI:3090403) [Arabidopsis thaliana]; alternative splice forms exist
3_23040001_23070000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL06-13-K18	At3g62260 / protein phosphatase 2C (PP2C), putative		RAFL06-13-K18 ,At3g62260 protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR:S22423
5_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	10	4371	0.039814703	0.39814702	10
		RAFL04-17-B06	At5g22060 / DnaJ protein, putative		RAFL04-17-B06 ,At5g22060 DNAJ heat shock protein, putative strong similarity to SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL07-08-I10	At5g22460 / esterase/lipase/thioesterase family		At5g22460 ,RAFL07-08-I10 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379
		RAFL05-08-E17	At5g22330 / Ruv DNA-helicase-related protein		At5g22330 ,RAFL05-08-E17 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus]
1_4770001_4800000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-E24	At1g13990 / expressed protein		At1g13990 ,RAFL05-05-E24 expressed protein
1_19290001_19320000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-M12	At1g52930 / expressed protein		RAFL04-14-M12 ,At1g52930 brix domain-containing protein contains Pfam domain, PF04427: Brix domain
1_2430001_2460000					A	B	C	D	P	P'	N
	Cluster:2-0				4	146	5	4508	1.1431223E-4	4.572489E-4	4
		RAFL08-18-F01	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-18-F01 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL09-13-F11	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL09-13-F11 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL07-17-I21	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL07-17-I21 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL08-09-H17	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-09-H17 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
1_25410001_25440000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-01-L22	At1g68620 / expressed protein		RAFL05-01-L22 ,At1g68620 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
4_12870001_12900000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-14-N02	At4g27960 / ubiquitin-conjugating enzyme 9 (UBC9)		At4g27960 ,RAFL04-14-N02 ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883
5_24660001_24690000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL06-13-P21	At5g62130 / expressed protein		At5g62130 ,RAFL06-13-P21 Per1-like protein-related
1_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-21-I19	At1g43670 / fructose 1,6-bisphosphatase -related		RAFL05-21-I19 ,At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative very strong similarity to SP|P46267 Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) {Brassica napus}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
1_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	3	4554	0.004895142	0.019580567	4
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
3_19950001_19980000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
1_26970001_27000000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL06-08-C15	At1g72610 / germin-like protein (AtGER1)		RAFL06-08-C15 ,At1g72610 germin-like protein (GER1) identical to germin-like protein subfamily 3 member 1 SP|P94040; contains Pfam profile: PF01072 Germin family
4_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-12-C20	At4g04330 / expressed protein		RAFL04-12-C20 ,At4g04330 expressed protein
3_19230001_19260000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-13-H12	At3g51840 / acyl-coA dehydrogenase		At3g51840 ,RAFL06-13-H12 short-chain acyl-CoA oxidase identical to Short-chain acyl CoA oxidase [Arabidopsis thaliana] GI:5478795; contains InterPro entry IPR006089: Acyl-CoA dehydrogenase
1_5910001_5940000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL11-07-B20	At1g17330 / hypothetical protein		RAFL11-07-B20 ,At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related
5_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	11	4599	0.009126297	0.07301038	8
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
3_19380001_19410000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-17-A01	At3g52300 / expressed protein		RAFL05-17-A01 ,At3g52300 ATP synthase D chain-related contains weak similarity to ATP synthase D chain, mitochondrial (EC 3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
5_16800001_16830000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
5_19530001_19560000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-L12	At5g48930 / anthranilate N-hydroxycinnamoyl/benzoyltransferase family		RAFL04-15-L12 ,At5g48930 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus [GI:3288180, GI:2239091]; contains Pfam profile PF02458 transferase family
2_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	9	4618	0.003051236	0.024409888	8
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
5_24600001_24630000					A	B	C	D	P	P'	N
	Cluster:6-2				3	173	1	4486	2.0567402E-4	4.1134804E-4	2
		RAFL05-05-M22	At5g61990 / pentatricopeptide (PPR) repeat-containing protein		At5g61990 ,RAFL05-05-M22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL07-10-G12	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL07-10-G12 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-10-G12
		RAFL04-09-J03	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL04-09-J03 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-09-J03
5_12360001_12390000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-07-E13	At5g33320 / triose phosphate/phosphate translocator, putative		At5g33320 ,RAFL06-07-E13 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea}
1_3810001_3840000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-08-I15	At1g11360 / expressed protein		RAFL08-08-I15 ,At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) [Lycopersicon esculentum]
3_22650001_22680000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-08-A21	At3g61220 / short-chain dehydrogenase/reductase family protein		At3g61220 ,RAFL07-08-A21 short-chain dehydrogenase/reductase (SDR) family protein similar to carbonyl reductase GI:1049108 from [Mus musculus]
5_24030001_24060000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
1_5490001_5520000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-C07	At1g16030 / heat shock protein hsp70b		RAFL05-14-C07 ,At1g16030 heat shock protein 70, putative / HSP70, putative similar to heat shock protein hsp70 GI:1771478 from [Pisum sativum]
2_9510001_9540000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-09-N09	At2g22500 / mitochondrial carrier protein family		At2g22500 ,RAFL05-09-N09 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein
4_8700001_9000000					A	B	C	D	P	P'	N
	Cluster:1-0				4	145	12	4502	0.0013500572	0.016200686	12
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
3_22050001_22080000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-17-C18	At3g59690 / expressed protein		At3g59690 ,RAFL04-17-C18 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif
4_1500001_1530000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-C10	At4g03420 / expressed protein		At4g03420 ,RAFL05-17-C10 expressed protein
4_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	13	4544	0.04433326	0.39899936	9
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
		RAFL07-16-J11	At4g36870 / BEL1-like homeobox 2 protein (BLH2)		RAFL07-16-J11 ,At4g36870 BEL1-like homeobox 2 protein (BLH2)
1_9300001_9330000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-09-N14	At1g26920 / expressed protein		RAFL06-09-N14 ,At1g26920 expressed protein Location of EST 228A16T7A, gb|N65686
1_14100001_14400000					A	B	C	D	P	P'	N
	Cluster:5-2				3	123	3	4534	3.6307445E-4	0.0014522978	4
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
2_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL06-16-J10	At2g06050 / 12-oxophytodienoate reductase (OPR3)(DDE1)		RAFL06-16-J10 ,At2g06050 12-oxophytodienoate reductase (OPR3) / delayed dehiscence1 (DDE1) nearly identical to DELAYED DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314]; contains Pfam profile PF00724:oxidoreductase, FAD/FMN-binding; identical to cDNA OPDA-reductase homolog GI:5059114
1_15660001_15690000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-18-N16	At1g42990 / bZIP family transcription factor		At1g42990 ,RAFL05-18-N16 bZIP transcription factor family protein contains Pfam profile: PF00170: bZIP transcription factor
4_780001_810000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-14-A18	At4g01850 / S-adenosylmethionine synthase 2		At4g01850 ,RAFL05-14-A18 S-adenosylmethionine synthetase 2 (SAM2) identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Arabidopsis thaliana] SWISS-PROT:P17562
2_17610001_17640000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-11-I16	At2g42490 / copper amine oxidase -related		At2g42490 ,RAFL05-11-I16 copper amine oxidase, putative similar to copper methylamine oxidase precursor (MAOXII) [Arthrobacter sp.] SWISS-PROT:Q07123
4_14040001_14070000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
5_2700001_2730000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	0	4447	0.0021362621	0.0021362621	1
		RAFL04-13-O20	At5g08420 / rev interacting protein mis3 - like		At5g08420 ,RAFL04-13-O20 expressed protein
		RAFL04-20-G24	At5g08400 / expressed protein		RAFL04-20-G24 ,At5g08400 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp.
5_21900001_22200000					A	B	C	D	P	P'	N
	Cluster:4-0				5	235	12	4411	0.0012869332	0.009008532	7
		RAFL06-07-B07	At5g55190 / GTP-binding protein atran3, putative		RAFL06-07-B07 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
		RAFL05-17-L19	At5g55160 / ubiquitin-like protein SMT3, putative		At5g55160 ,RAFL05-17-L19 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP:P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family
		RAFL06-15-K24	At5g54750 / transport protein particle component Bet3p-related protein		RAFL06-15-K24 ,At5g54750 transport protein particle (TRAPP) component Bet3, putative similar to SP|P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3
		RAFL06-16-L13	At5g54960 / pyruvate decarboxylase (gb|AAB16855.1)		RAFL06-16-L13 ,At5g54960 pyruvate decarboxylase, putative strong similarity to pyruvate decarboxylase 1 [Vitis vinifera] GI:10732644; contains InterPro entry IPR000399: Pyruvate decarboxylase
		RAFL05-17-C16	At5g55190 / GTP-binding protein atran3, putative		RAFL05-17-C16 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
	Cluster:7-1				4	261	13	4385	0.0134790605	0.09435342	7
		RAFL11-06-H06	At5g54650 / formin homology 2 (FH2) domain-containing protein		RAFL11-06-H06 ,At5g54650 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181
		RAFL06-13-G07	At5g54855 / expressed protein		At5g54855 ,RAFL06-13-G07 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family
		RAFL09-12-N24	At5g54810 / tryptophan synthase, beta subunit 1 (TSB1)		At5g54810 ,RAFL09-12-N24 tryptophan synthase, beta subunit 1 (TSB1) identical to SP|P14671
		RAFL05-07-E06	At5g55100 / expressed protein		RAFL05-07-E06 ,At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein contains Pfam domain PF01805: Surp module
1_25380001_25410000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A15	At1g68580 / expressed protein		At1g68580 ,RAFL04-17-A15 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain and PF05641: Agenet domain
4_16200001_16230000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
3_19140001_19170000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-12-D06	At3g51600 / nonspecific lipid transfer protein 5 (LTP 5)		At3g51600 ,RAFL06-12-D06 nonspecific lipid transfer protein 5 (LTP5) identical to SP|Q9XFS7 Nonspecific lipid-transfer protein 5 (LTP 5) {Arabidopsis thaliana}
4_16800001_16830000					A	B	C	D	P	P'	N
	Cluster:8-0				3	106	0	4554	1.243132E-5	1.243132E-5	1
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
3_6960001_6990000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-L05	At3g20000 / membrane import protein -related		RAFL08-12-L05 ,At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin
5_18240001_18270000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL05-01-H15	At5g45680 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase		RAFL05-01-H15 ,At5g45680 FK506-binding protein 1 (FKBP13) identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (Ppiase) (Rotamase) (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744) [Arabidopsis thaliana]; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
1_10500001_10800000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	7	4592	0.00627458	0.04392206	7
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
5_8550001_8580000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-N23	At5g24930 / CONSTANS B-box zinc finger family protein		RAFL04-17-N23 ,At5g24930 zinc finger (B-box type) family protein similar to CONSTANS-like protein 1 GI:4091804 from [Malus x domestica]
4_5040001_5070000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-K18	At4g09650 / H+-transporting ATP synthase-related protein		At4g09650 ,RAFL06-07-K18 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to SP|P32980 ATP synthase delta chain, chloroplast precursor (EC 3.6.3.14) {Nicotiana tabacum}; contains Pfam profile PF00213: ATP synthase F1, delta subunit
3_19710001_19740000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL08-17-D17	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL08-17-D17 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
		RAFL06-09-F14	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL06-09-F14 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
3_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:3-2				7	30	123	4503	5.706903E-5	0.0015979329	28
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
	Cluster:1-1				7	98	123	4435	0.026404485	0.7393256	28
		RAFL05-17-A02	At3g20810 / expressed protein		At3g20810 ,RAFL05-17-A02 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain PF02373: jmjC domain
		RAFL07-14-J18	At3g23530 / cyclopropane synthase, putative		RAFL07-14-J18 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL09-10-N16	At3g18000 / phosphoethanolamine N-methyltransferase, putative		RAFL09-10-N16 ,At3g18000 phosphoethanolamine N-methyltransferase 1 / PEAMT 1 (NMT1) identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (SP:Q9FR44){Arabidopsis thaliana}; strong similarity to phosphoethanolamine N-methyltransferase from [Spinacia oleracea] GI:7407189, [Triticum aestivum] GI:17887465; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family
		RAFL05-19-J04	At3g24430 / mrp protein -related		RAFL05-19-J04 ,At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function
		RAFL04-14-G15	At3g22780 / DNA binding protein -related		RAFL04-14-G15 ,At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425
		RAFL07-18-P15	At3g22120 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At3g22120 ,RAFL07-18-P15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein Lycopersicon esculentum, proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL05-17-H07	At3g17840 / leucine-rich repeat transmembrane protein kinase, putative		At3g17840 ,RAFL05-17-H07 leucine-rich repeat transmembrane protein kinase, putative similar to receptor kinase GB:AAA33715 from [Petunia integrifolia]
	Cluster:2-1				12	232	118	4301	0.0452302	1.2664456	28
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL04-13-D06	At3g23940 / dihydroxyacid dehydratase -related		RAFL04-13-D06 ,At3g23940 dehydratase family contains Pfam profile: PF00920 dehydratase family
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL06-16-M11	At3g18780 / actin 2		At3g18780 ,RAFL06-16-M11 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-21-D08	At3g18490 / chloroplast nucleoid DNA-binding protein -related		At3g18490 ,RAFL05-21-D08 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
		RAFL04-16-M03	At3g20790 / expressed protein		At3g20790 ,RAFL04-16-M03 oxidoreductase family protein weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
		RAFL07-12-K04	At3g20050 / T-complex protein 1, alpha subunit/chaperonin		RAFL07-12-K04 ,At3g20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
3_5580001_5610000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	2	4511	0.00591059	0.017731769	3
		RAFL04-15-D12	At3g16460 / jacalin lectin family		At3g16460 ,RAFL04-15-D12 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase binding protein [Brassica napus] GI:1711296, GI:1655824, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin family
		RAFL03-03-J03	At3g16450 / jacalin lectin family		At3g16450 ,RAFL03-03-J03 jacalin lectin family protein similar to SP|Q9SAV1 Myrosinase binding protein-like At1g52030 {Arabidopsis thaliana}; contains Pfam profile: PF01419 jacalin-like lectin domain
5_25620001_25650000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-03-E09	At5g64860 / glycosyl hydrolase family 77 (4-alpha-glucanotransferase)		At5g64860 ,RAFL05-03-E09 4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]
3_4200001_4230000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-17-H16	At3g13110 / serine acetyltransferase (Sat-1)		RAFL04-17-H16 ,At3g13110 serine O-acetyltransferase (SAT-1) identical to serine acetyltransferase (Sat-1) GI:1184048 [Arabidopsis thaliana]
1_7650001_7680000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
4_8550001_8580000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-16-M17	At4g17090 / glycosyl hydrolase family 14 (beta-amylase)		At4g17090 ,RAFL06-16-M17 beta-amylase (CT-BMY) / 1,4-alpha-D-glucan maltohydrolase identical to beta-amylase enzyme GI:6065749 from [Arabidopsis thaliana]
3_15600001_15630000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-09-N18	At3g43720 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-09-N18 ,At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
2_18720001_18750000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-09-M22	At2g45600 / expressed protein		At2g45600 ,RAFL09-09-M22 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873
4_14940001_14970000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-02-O17	At4g33150 / lysine-ketoglutarate reductase/saccharopine		At4g33150 ,RAFL05-02-O17 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from [Arabidopsis thaliana]
2_17400001_17700000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	12	4418	0.03588357	0.39471924	11
		RAFL06-09-K10	At2g41960 / expressed protein		At2g41960 ,RAFL06-09-K10 expressed protein
		RAFL05-21-P13	At2g42600 / phosphoenolpyruvate carboxylase		At2g42600 ,RAFL05-21-P13 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase
		RAFL08-09-E20	At2g41840 / 40S ribosomal protein S2 (RPS2C)		RAFL08-09-E20 ,At2g41840 40S ribosomal protein S2 (RPS2C)
	Cluster:7-1				3	262	12	4386	0.049681213	0.54649335	11
		RAFL09-10-C07	At2g42030 / C3HC4-type zinc finger protein family		At2g42030 ,RAFL09-10-C07 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL08-11-N21	At2g42270 / U5 small nuclear ribonucleoprotein helicase, putative		RAFL08-11-N21 ,At2g42270 U5 small nuclear ribonucleoprotein helicase, putative
		RAFL05-02-C24	At2g41900 / CCCH-type zinc finger protein -related		At2g41900 ,RAFL05-02-C24 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
5_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	9	4410	0.021903817	0.19713435	9
		RAFL08-15-K17	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL08-15-K17 40S ribosomal protein S4 (RPS4B)
		RAFL08-14-N17	At5g07020 / proline-rich protein family		RAFL08-14-N17 ,At5g07020 proline-rich family protein
		RAFL05-12-E19	At5g07340 / calnexin, putative		At5g07340 ,RAFL05-12-E19 calnexin, putative identical to calnexin homolog 2 from Arabidopsis thaliana [SP|Q38798], strong similarity to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262 calreticulin family
	Cluster:1-1				2	103	10	4548	0.028613875	0.25752488	9
		RAFL04-15-E20	At5g07240 / expressed protein		At5g07240 ,RAFL04-15-E20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
		RAFL04-10-L09	At5g07030 / nucleoid DNA-binding-related protein		RAFL04-10-L09 ,At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease
4_4740001_4770000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-N07	At4g09040 / RNA recognition motif (RRM) - containing protein		At4g09040 ,RAFL04-15-N07 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
3_17580001_17610000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-04-L01	At3g47670 / pectinesterase family		At3g47670 ,RAFL05-04-L01 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase from Arabidopsis thaliana SP|Q43867, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor
3_20400001_20700000					A	B	C	D	P	P'	N
	Cluster:3-2				2	35	12	4614	0.0052507473	0.063008964	12
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
1_20310001_20340000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-O09	At1g55530 / expressed protein		At1g55530 ,RAFL05-04-O09 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
3_20760001_20790000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-18-O11	At3g55980 / expressed protein		At3g55980 ,RAFL08-18-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
1_27300001_27600000					A	B	C	D	P	P'	N
	Cluster:4-0				3	237	9	4414	0.020962995	0.20962994	10
		RAFL09-14-N04	At1g73590 / auxin transporter splice variant b -related		At1g73590 ,RAFL09-14-N04 auxin efflux carrier protein, putative (PIN1) identical to putative auxin efflux carrier protein; AtPIN1 [Arabidopsis thaliana] GI:4151319; contains Pfam profile PF03547: Auxin Efflux Carrier
		RAFL04-17-F10	At1g74230 / glycine-rich RNA-binding protein		RAFL04-17-F10 ,At1g74230 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris]
		RAFL11-02-J06	At1g74050 / 60S ribosomal protein L6 (RPL6C)		At1g74050 ,RAFL11-02-J06 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa]
5_20790001_20820000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-I02	At5g51940 / DNA-directed RNA polymerase II subunit-related protein		RAFL05-07-I02 ,At5g51940 DNA-directed RNA polymerase II, putative similar to SP|O88828 DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) {Rattus norvegicus}; contains Pfam profile PF01192: RNA polymerases K / 14 to 18 kDa subunit
1_23250001_23280000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
3_930001_960000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL11-05-E10	At3g03770 / leucine-rich repeat transmembrane protein kinase, putative		At3g03770 ,RAFL11-05-E10 leucine-rich repeat transmembrane protein kinase, putative may contain C-terminal ser/thr protein kinase domain, similar to serine/threonine protein kinase Pto GB:AAB47421 [Lycopersicon esculentum]
5_22380001_22410000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	1	4585	6.383303E-9	1.2766606E-8	2
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
2_11280001_11310000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
1_17370001_17400000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-14-A14	At1g48210 / serine/threonine protein kinase, putative		RAFL05-14-A14 ,At1g48210 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 [Lycopersicon esculentum] gi|3668069|gb|AAC61805; contains protein kinase domain, Pfam:PF00069
5_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:0-0				14	22	93	4534	1.1793967E-14	3.1843712E-13	27
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	Cluster:6-1				14	301	93	4255	0.016745122	0.45211828	27
		RAFL05-10-P24	At5g40890 / CLC-a chloride channel protein		At5g40890 ,RAFL05-10-P24 chloride channel protein (CLC-a) identical to GI:1742952 (gb|AAC05742.1)
		RAFL05-14-B01	At5g42980 / thioredoxin H-type 3 (TRX-H-3)		RAFL05-14-B01 ,At5g42980 thioredoxin H-type 3 (TRX-H-3) (GIF1) identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3) {Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA for thioredoxin GI:992961
		RAFL09-06-P04	At5g39730 / avirulence induced gene (AIG) - like protein		At5g39730 ,RAFL09-06-P04 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana}
		RAFL05-14-O08	At5g39950 / thioredoxin H-type 2 (TRX-H-2)		At5g39950 ,RAFL05-14-O08 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI:992963
		RAFL04-20-N11	At5g41370 / TFIIH basal transcription factor complex helicase XPB subunit, putative		At5g41370 ,RAFL04-20-N11 DNA repair protein, putative / TFIIH basal transcription factor complex helicase XPB subunit, putative (XPB1) contains Pfam profile PF00271:Helicase conserved C-terminal domain; identical to cDNA putative DNA repair protein (XPB1) GI:10314019
		RAFL06-09-A21	At5g40580 / 20S proteasome beta subunit B (PBB2)		At5g40580 ,RAFL06-09-A21 20S proteasome beta subunit B (PBB2) (PRCFC) identical to 20S proteasome beta subunit PBB2 [Arabidopsis thaliana] GI:3421104, cDNA proteasome subunit prcfc GI:2511575
		RAFL07-12-M14	At5g42390 / pitrilysin		At5g42390 ,RAFL07-12-M14 metalloendopeptidase identical to chloroplast processing enzyme metalloendopeptidase [Arabidopsis thaliana] gi|2827039|gb|AAC39482
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL09-12-L08	At5g38470 / DNA repair protein RAD23, putative		RAFL09-12-L08 ,At5g38470 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform I GI:1914683 from [Daucus carota]
		RAFL06-12-E24	At5g42790 / 20S proteasome alpha subunit F1 (PAF1)		At5g42790 ,RAFL06-12-E24 20S proteasome alpha subunit F1 (PAF1) (gb|AAC32062.1)
		RAFL11-01-O04	At5g42520 / expressed protein		RAFL11-01-O04 ,At5g42520 expressed protein
		RAFL11-10-D22	At5g43280 / enoyl-CoA hydratase/isomerase family		RAFL11-10-D22 ,At5g43280 enoyl-CoA hydratase/isomerase family protein similar to Delta 3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial (ECH1) from Rattus norvegicus [SP|Q62651], from Homo sapiens [SP|Q13011]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
		RAFL04-13-C05	At5g43780 / ATP sulfurylase precursor (gb|AAD26634.1)		At5g43780 ,RAFL04-13-C05 sulfate adenylyltransferase 4 / ATP-sulfurylase 4 (APS4) identical to ATP sulfurylase precursor (APS4) [Arabidopsis thaliana] GI:4633131
	Cluster:8-0				6	103	101	4453	0.03824088	1.0325037	27
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
		RAFL04-17-M08	At5g43450 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL04-17-M08 ,At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967)
		RAFL06-15-G18	At5g42380 / calmodulin-related protein, putative		RAFL06-15-G18 ,At5g42380 calmodulin-related protein, putative similar to regulator of gene silencing calmodulin-related protein GI:12963415 from [Nicotiana tabacum]
5_900001_930000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-E03	At5g03560 / expressed protein		At5g03560 ,RAFL05-04-E03 expressed protein
1_9750001_9780000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL03-05-O03	At1g28050 / CONSTANS B-box zinc finger family protein		At1g28050 ,RAFL03-05-O03 zinc finger (B-box type) family protein
4_8700001_8730000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
4_16560001_16590000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-02-B21	At4g37430 / cytochrome P450 91A2		RAFL05-02-B21 ,At4g37430 cytochrome P450 81F1 (CYP81F1) (CYP91A2) identical to cytochrome P450 81F1 (91A2) (SP:O65790) [Arabidopsis thaliana]
2_12000001_12030000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-12-N06	At2g28305 / expressed protein		At2g28305 ,RAFL09-12-N06 expressed protein contains Pfam profile PF03641: decarboxylase family protein
5_13710001_13740000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-02-H10	At5g35840 / phytochrome C (PHYC)		RAFL05-02-H10 ,At5g35840 phytochrome C (PHYC) identical to SP|P14714 Phytochrome C {Arabidopsis thaliana}
1_7920001_7950000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-18-L02	At1g22500 / RING-H2 zinc finger protein ATL5 -related		At1g22500 ,RAFL04-18-L02 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger)
1_18900001_19200000					A	B	C	D	P	P'	N
	Cluster:0-1				4	102	7	4550	7.364662E-5	5.155263E-4	7
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	Cluster:1-0				2	147	9	4505	0.04617144	0.32320008	7
		RAFL08-09-I24	At1g52040 / jacalin lectin family		RAFL08-09-I24 ,At1g52040 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
		RAFL09-14-K04	At1g52040 / jacalin lectin family		At1g52040 ,RAFL09-14-K04 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
3_6210001_6240000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL08-11-G19	At3g18165 / expressed protein		At3g18165 ,RAFL08-11-G19 expressed protein similar to DAM1 (GI:3985930) [Homo sapiens]; contains Pfam profile PF05700: Breast carcinoma amplified sequence 2 (BCAS2)
		RAFL05-04-O11	At3g18190 / chaperonin, putative		At3g18190 ,RAFL05-04-O11 chaperonin, putative similar to SWISS-PROT:P50991- T-complex protein 1, delta subunit (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
1_25740001_25770000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-13-J20	At1g69410 / Eukaryotic initiation factor 5A -related		RAFL09-13-J20 ,At1g69410 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
1_8430001_8460000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-09-I21	At1g23880 / expressed protein		At1g23880 ,RAFL08-09-I21 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat
1_24000001_24300000					A	B	C	D	P	P'	N
	Cluster:2-0				3	147	11	4502	0.009149455	0.0823451	9
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
	Cluster:6-1				4	311	10	4338	0.011896291	0.10706662	9
		RAFL04-09-A20	At1g65720 / expressed protein		At1g65720 ,RAFL04-09-A20 expressed protein
		RAFL04-17-H05	At1g65650 / expressed protein		At1g65650 ,RAFL04-17-H05 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to 26S proteasome regulatory complex subunit p37A [Drosophila melanogaster] GI:6434962; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1
		RAFL04-20-K18	At1g65980 / type 2 peroxiredoxin -related		RAFL04-20-K18 ,At1g65980 peroxiredoxin type 2, putative strong similarity to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL02-10-H06	At1g65820 / microsomal glutathione s-transferase, putative		RAFL02-10-H06 ,At1g65820 microsomal glutathione s-transferase, putative similar to MGST3_HUMAN SP:O14880
2_16890001_16920000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL06-13-E16	At2g40630 / expressed protein		At2g40630 ,RAFL06-13-E16 expressed protein
		RAFL04-14-J20	At2g40660 / methionyl-tRNA synthetase -related		RAFL04-14-J20 ,At2g40660 tRNA-binding region domain-containing protein similar to SP|Q12904 Multisynthetase complex auxiliary component p43 [Contains: Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Homo sapiens}; contains Pfam profile PF01588: Putative tRNA binding domain
1_660001_690000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-16-O07	At1g02930 / glutathione transferase, putative		At1g02930 ,RAFL05-16-O07 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]
4_11040001_11070000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-18-D20	At4g23060 / expressed protein		At4g23060 ,RAFL05-18-D20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
4_6300001_6330000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-14-D12	At4g12430 / trehalose-6-phosphate phosphatase, putative		At4g12430 ,RAFL07-14-D12 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase
1_6600001_6900000					A	B	C	D	P	P'	N
	Cluster:9-2				3	64	6	4590	2.2394971E-4	0.001567648	7
		RAFL09-09-P15	At1g19180 / expressed protein		RAFL09-09-P15 ,At1g19180 expressed protein
		RAFL06-10-F03	At1g19180 / expressed protein		RAFL06-10-F03 ,At1g19180 expressed protein
		RAFL05-02-L02	At1g19180 / expressed protein		RAFL05-02-L02 ,At1g19180 expressed protein
3_15900001_16200000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	3	4551	0.005170766	0.020683063	4
		RAFL06-13-E03	At3g44300 / nitrilase 2		RAFL06-13-E03 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
		RAFL08-10-H06	At3g44300 / nitrilase 2		RAFL08-10-H06 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
1_19920001_19950000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	1	4583	8.409994E-4	0.0016819988	2
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
5_3390001_3420000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-06-K06	At5g10730 / expressed protein		RAFL09-06-K06 ,At5g10730 expressed protein
5_13530001_13560000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-16-N11	At5g35630 / glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1) (pir||S18600)		At5g35630 ,RAFL04-16-N11 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-- ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
1_2670001_2700000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	5	4425	0.044206142	0.2210307	5
		RAFL07-11-D02	At1g08520 / magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin IX chelatase) (CHLD), putative		RAFL07-11-D02 ,At1g08520 magnesium-chelatase subunit chlD, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum sativum]
		RAFL05-02-J02	At1g08490 / nitrogen fixation protein. putative (NifS)		RAFL05-02-J02 ,At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V
3_19980001_20010000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL03-05-E08	At3g53990 / expressed protein		At3g53990 ,RAFL03-05-E08 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
		RAFL02-10-G21	At3g53990 / expressed protein		At3g53990 ,RAFL02-10-G21 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
5_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
1_3390001_3420000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-12-M19	At1g10360 / glutathione transferase, putative		RAFL04-12-M19 ,At1g10360 glutathione S-transferase, putative similar to glutathione S-transferase (sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275 gb:AB039930.
3_4860001_4890000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-09-C10	At3g14560 / expressed protein		At3g14560 ,RAFL08-09-C10 expressed protein
1_27510001_27540000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-13-F01	At1g74100 / sulfotransferase family		RAFL05-13-F01 ,At1g74100 sulfotransferase family protein similar to SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-) (F4-ST) {Flaveria chloraefolia}; contains Pfam profile PF00685: Sulfotransferase domain
3_3900001_4200000					A	B	C	D	P	P'	N
	Cluster:0-1				4	102	15	4542	7.516408E-4	0.0075164083	10
		RAFL07-16-P05	At3g12780 / phosphoglycerate kinase -related		RAFL07-16-P05 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-15-L04	At3g12780 / phosphoglycerate kinase -related		RAFL09-15-L04 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-14-L16	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL07-14-L16 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-18-L22	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL09-18-L22 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
	Cluster:8-1				3	159	16	4485	0.026495453	0.26495454	10
		RAFL09-16-C16	At3g12570 / expressed protein		At3g12570 ,RAFL09-16-C16 expressed protein
		RAFL07-09-M01	At3g12740 / membrane protein common family		RAFL07-09-M01 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
		RAFL06-16-B16	At3g12740 / membrane protein common family		RAFL06-16-B16 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
4_1020001_1050000					A	B	C	D	P	P'	N
	Cluster:10-1				2	41	1	4619	2.4776903E-4	4.9553806E-4	2
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
5_16080001_16110000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL05-17-L14	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL05-17-L14 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
		RAFL11-03-K10	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL11-03-K10 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
1_25920001_25950000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL06-15-N08	At1g69840 / expressed protein		At1g69840 ,RAFL06-15-N08 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI:7716466; contains Pfam profile PF01145: SPFH domain / Band 7 family
2_9300001_9330000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL11-05-A04	At2g21970 / stress enhanced protein 2 (SEP2); nuclear gene for chloroplast product		At2g21970 ,RAFL11-05-A04 stress enhanced protein 2 (SEP2) nearly identical to stress enhanced protein 2; SEP2 (GI:7384980) [Arabidopsis thaliana]
3_5880001_5910000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-02-I18	At3g17210 / expressed protein		At3g17210 ,RAFL11-02-I18 stable protein 1-related similar to stable protein 1 (GI:13445204) [Populus tremula] PMID:12376651; similar to pop3 peptide GB:AAC26526 from [Populus balsamifera subsp. trichocarpa X Populus deltoides]
2_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL05-07-F05	At2g17360 / 40S ribosomal protein S4 (RPS4A)		At2g17360 ,RAFL05-07-F05 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
		RAFL09-18-O15	At2g17360 / 40S ribosomal protein S4 (RPS4A)		RAFL09-18-O15 ,At2g17360 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
	Cluster:5-0				1	76	2	4584	0.04873567	0.09747134	2
		RAFL08-14-M16	At2g17340 / expressed protein		RAFL08-14-M16 ,At2g17340 pantothenate kinase-related contains Pfam domain, PF01937: Protein of unknown function; supported by tandem duplication of pantothenate kinase -related protein (TIGR_Ath1:At2g17320) [Arabidopsis thaliana]
1_21000001_24000000					A	B	C	D	P	P'	N
	Cluster:2-0				10	140	77	4436	4.19244E-4	0.010900344	26
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-C02	At1g61520 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C02 ,At1g61520 chlorophyll A-B binding protein / LHCI type III (LHCA3.1) nearly identical to PSI type III chlorophyll a/b-binding protein GI:430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll a/b-binding protein GI:430947 from [Arabidopsis thaliana]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-17-B02	At1g59359 / 40S ribosomal protein S2 (RPS2B)		RAFL07-17-B02 ,At1g59359 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-13-D15	At1g65295 / expressed protein		RAFL08-13-D15 ,At1g65295 expressed protein
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	Cluster:9-1				7	89	80	4487	0.0019192069	0.04989938	26
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
		RAFL09-10-F14	At1g63010 / expressed protein		At1g63010 ,RAFL09-10-F14 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
1_1530001_1560000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	1	4638	0.01026841	0.02053682	2
		RAFL06-10-C16	At1g05340 / expressed protein		RAFL06-10-C16 ,At1g05340 expressed protein
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
1_7890001_7920000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-02-P11	At1g22370 / glycosyltransferase family		At1g22370 ,RAFL05-02-P11 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family
4_6300001_6600000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	4	4580	0.0040679234	0.020339618	5
		RAFL06-07-K01	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-07-K01 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
		RAFL06-16-J22	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-16-J22 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
4_16650001_16680000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-N03	At4g37660 / ribosomal - like protein		RAFL05-15-N03 ,At4g37660 ribosomal protein L12 family protein ribosomal protein L12, Liberobacter africanum, U09675
2_16320001_16350000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-I05	At2g39220 / patatin family		At2g39220 ,RAFL07-13-I05 patatin family protein similar to patatin-like latex allergen [Hevea brasiliensis][PMID:10589016]; contains patatin domain PF01734
4_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	7	4412	0.012910854	0.09037598	7
		RAFL06-10-J18	At4g14320 / 60S ribosomal protein L36a/L44 (RPL36aB)		RAFL06-10-J18 ,At4g14320 60S ribosomal protein L36a/L44 (RPL36aB)
		RAFL07-16-L09	At4g14420 / elicitor like protein		At4g14420 ,RAFL07-16-L09 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] gi|1762945|gb|AAC49975
		RAFL05-21-A10	At4g14870 / expressed protein		At4g14870 ,RAFL05-21-A10 expressed protein
	Cluster:1-1				2	103	8	4550	0.02008839	0.14061873	7
		RAFL06-14-F04	At4g14890 / ferredoxin family		RAFL06-14-F04 ,At4g14890 ferredoxin family protein similar to SP|P00252 Ferredoxin I from Nostoc muscorum, SP|P00248 Ferredoxin from Mastigocladus laminosus, SP|P00244 Ferredoxin I from Aphanizomenon flos-aquae; contains Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding domain
		RAFL07-08-F02	At4g14360 / dehydration-induced protein-related		At4g14360 ,RAFL07-08-F02 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
3_570001_600000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-13-P15	At3g02750 / protein phosphatase 2C (PP2C)		RAFL07-13-P15 ,At3g02750 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2C; PP2C (GI:3643088) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain;
1_3510001_3540000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-07-M15	At1g10670 / ATP citrate-lyase -related		At1g10670 ,RAFL07-07-M15 expressed protein
2_16140001_16170000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-20-B02	At2g38750 / annexin -related		At2g38750 ,RAFL04-20-B02 annexin 4 (ANN4) nearly identical to annexin (AnnAt4) [Arabidopsis thaliana] GI:6503084; contains Pfam profile PF00191: Annexin
1_30030001_30060000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-18-H12	At1g80840 / WRKY family transcription factor		RAFL05-18-H12 ,At1g80840 WRKY family transcription factor similar to WRKY transcription factor GB:BAA87058 GI:6472585 from [Nicotiana tabacum]
1_21900001_22200000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	2	4582	0.0016634972	0.0049904916	3
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
5_24900001_25200000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	12	4542	0.041028306	0.49233967	12
		RAFL07-11-G07	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL07-11-G07 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
		RAFL04-10-G08	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL04-10-G08 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
1_23760001_23790000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-16-D24	At1g64950 / cytochrome P450, putative		At1g64950 ,RAFL09-16-D24 cytochrome P450, putative similar to cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602) [Arabidopsis thaliana];similar to cytochrome P450 (GI:438242) [Solanum melongena]
1_9900001_10200000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	8	4591	0.0077741425	0.06219314	8
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
3_10020001_10050000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-09-G20	At3g27210 / expressed protein		RAFL08-09-G20 ,At3g27210 expressed protein
2_12300001_12330000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-17-D16	At2g28840 / RING zinc finger ankyrin protein -related		At2g28840 ,RAFL04-17-D16 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
4_1_3000000					A	B	C	D	P	P'	N
	Cluster:8-1				9	153	72	4429	0.0018003528	0.04320847	24
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
	Cluster:10-1				4	39	77	4543	0.006235307	0.14964737	24
		RAFL05-12-H13	At4g01020 / helicase domain-containing protein		At4g01020 ,RAFL05-12-H13 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain
		RAFL05-14-D24	At4g05100 / myb DNA-binding protein		At4g05100 ,RAFL05-14-D24 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
	Cluster:1-0				7	142	74	4440	0.014235923	0.34166214	24
		RAFL05-01-O08	At4g01150 / expressed protein		RAFL05-01-O08 ,At4g01150 expressed protein
		RAFL05-02-L04	At4g02530 / chloroplast thylakoid lumen protein		RAFL05-02-L04 ,At4g02530 chloroplast thylakoid lumen protein SP:022773 ;TL16_ARATH
		RAFL05-08-K07	At4g01310 / ribosomal protein L5p family		RAFL05-08-K07 ,At4g01310 ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5
		RAFL07-17-I11	At4g02290 / glycosyl hydrolase family 9		RAFL07-17-I11 ,At4g02290 glycosyl hydrolase family 9 protein similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891 from [Arabidopsis thaliana]
		RAFL06-16-A22	At4g05180 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL06-16-A22 ,At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
		RAFL07-07-D15	At4g04940 / transducin / WD-40 repeat protein family		At4g04940 ,RAFL07-07-D15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats
		RAFL09-14-J06	At4g04460 / aspartic protease -related		RAFL09-14-J06 ,At4g04460 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
	Cluster:8-2				4	58	77	4524	0.022002848	0.52806836	24
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
3_210001_240000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	2	4414	0.0013562166	0.00406865	3
		RAFL08-18-G23	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL08-18-G23 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-16-I19	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL07-16-I19 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL05-12-D03	At3g01540 / DEAD box RNA helicase (DRH1)		RAFL05-12-D03 ,At3g01540 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
5_210001_240000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-11-F15	At5g01600 / ferritin 1 precursor		RAFL06-11-F15 ,At5g01600 ferritin 1 (FER1) identical to ferritin [Arabidopsis thaliana] GI:1246401, GI:8163920
3_18240001_18270000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-12-F11	At3g49220 / pectinesterase family		At3g49220 ,RAFL07-12-F11 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
4_12930001_12960000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-16-H23	At4g28140 / AP2 domain transcription factor, putative		RAFL05-16-H23 ,At4g28140 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 - Arabidopsis thaliana, PID:g2281633
1_7560001_7590000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-10-H23	At1g21640 / expressed protein		At1g21640 ,RAFL05-10-H23 ATP-NAD kinase family protein contains similarity to NAD kinase [Homo sapiens] gi|20070086|gb|AAM01195; contains Pfam domain, PF01513: ATP-NAD kinase
5_6060001_6090000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-08-B08	At5g18380 / 40S ribosomal protein S16 (RPS16C)		At5g18380 ,RAFL05-08-B08 40S ribosomal protein S16 (RPS16C)
4_14550001_14580000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-12-O23	At4g32330 / expressed protein		RAFL04-12-O23 ,At4g32330 expressed protein
5_19560001_19590000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-08-E09	At5g49030 / isoleucyl-tRNA synthetase		RAFL07-08-E09 ,At5g49030 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
4_10590001_10620000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-16-O12	At4g21960 / peroxidase, putative		RAFL04-16-O12 ,At4g21960 peroxidase 42 (PER42) (P42) (PRXR1) identical to SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana}
1_29670001_29700000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL06-16-K01	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL06-16-K01 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
		RAFL04-19-L23	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL04-19-L23 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
1_29280001_29310000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	4	4519	0.012401914	0.062009573	5
		RAFL09-18-I11	At1g78820 / curculin-like (mannose-binding) lectin family		At1g78820 ,RAFL09-18-I11 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
		RAFL09-06-A15	At1g78820 / curculin-like (mannose-binding) lectin family		RAFL09-06-A15 ,At1g78820 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
1_19680001_19710000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-10-O06	At1g53840 / pectinesterase family		At1g53840 ,RAFL06-10-O06 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
2_9990001_10020000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-12-L06	At2g23600 / hydrolase, alpha/beta fold family		At2g23600 ,RAFL09-12-L06 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
Chromosome:1					A	B	C	D	P	P'	N
	Cluster:0-2				32	47	1087	3497	0.0012182354	0.040201765	33
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-12-J08	At1g14345 / expressed protein		At1g14345 ,RAFL08-12-J08 expressed protein contains one transmembrane domain
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL02-02-L10	At1g03130 / photosystem I reaction center subunit II precursor -related		RAFL02-02-L10 ,At1g03130 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL08-09-H12	At1g75460 / protease -related		At1g75460 ,RAFL08-09-H12 ATP-dependent protease La (LON) domain-containing protein weak similarity to SP|P36774 ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus xanthus}; contains Pfam profile PF02190: ATP-dependent protease La (LON) domain
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	Cluster:7-1				84	181	1035	3363	0.0037613933	0.12412597	33
		RAFL11-06-E04	At1g76920 / F-box protein family (FBX3)		At1g76920 ,RAFL11-06-E04 F-box family protein (FBX3) contains similarity to stamina pistilloidia GI:4101570, the pea ortholog of Fim and UFO from [Pisum sativum]
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-15-K12	At1g54270 / eukaryotic translation initiation factor 4A-2 (eIF4A-2)		RAFL05-15-K12 ,At1g54270 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia]
		RAFL02-07-N19	At1g10760 / SEX1 protein; nuclear gene for chloroplast product		At1g10760 ,RAFL02-07-N19 starch excess protein (SEX1) identical to SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA gi|12044357|gb|AF312027.1|AF312027
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-12-E01	At1g01550 / expressed protein		At1g01550 ,RAFL08-12-E01 expressed protein
		RAFL06-08-E17	At1g22840 / cytochrome C -related		RAFL06-08-E17 ,At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
		RAFL09-12-N02	At1g07630 / expressed protein		RAFL09-12-N02 ,At1g07630 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2c (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL11-05-C09	At1g78100 / F-box protein family		RAFL11-05-C09 ,At1g78100 F-box family protein contains F-box domain Pfam:PF00646
		RAFL09-16-J21	At1g72330 / alanine aminotransferase, putative		At1g72330 ,RAFL09-16-J21 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa
		RAFL05-16-O12	At1g27930 / expressed protein		RAFL05-16-O12 ,At1g27930 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579)
		RAFL05-21-L05	At1g60170 / expressed protein		RAFL05-21-L05 ,At1g60170 pre-mRNA processing ribonucleoprotein binding region-containing protein similar to U4/U6 snRNP-associated 61 kDa protein [Homo sapiens] GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain
		RAFL09-14-E14	At1g20560 / AMP-dependent synthetase and ligase family		RAFL09-14-E14 ,At1g20560 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to adenosine monophosphate binding protein 1 AMPBP1 (AMPBP1) GI:20799710
		RAFL08-11-M01	At1g67580 / protein kinase family		RAFL08-11-M01 ,At1g67580 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL11-04-K22	At1g29050 / expressed protein		RAFL11-04-K22 ,At1g29050 expressed protein similar to hypothetical protein GB:AAB67625 GI:2342727 from [Arabidopsis thaliana]
		RAFL04-20-P06	At1g05170 / galactosyltransferase family		RAFL04-20-P06 ,At1g05170 galactosyltransferase family protein
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL02-05-J03	At1g67730 / short chain dehydrogenase/reductase family protein (b-keto acyl reductase, putative)		RAFL02-05-J03 ,At1g67730 b-keto acyl reductase, putative (GLOSSY8) similar to b-keto acyl reductase GI:2586127 from [Hordeum vulgare]
		RAFL07-18-E24	At1g03400 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL07-18-E24 ,At1g03400 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); similar to ESTs emb|Z34690, gb|T04168, gb|H37738, gb|T76913, gb|T43801, amd gb|T21964
		RAFL06-16-K07	At1g73720 / transducin / WD-40 repeat protein family		RAFL06-16-K07 ,At1g73720 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to Will die slowly protein (SP:Q9V3J8)[Drosophila melanogaster]
		RAFL05-19-L21	At1g60650 / glycine-rich RNA-binding protein, putative		At1g60650 ,RAFL05-19-L21 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
		RAFL06-09-B20	At1g80400 / C3HC4-type zinc finger protein family		RAFL06-09-B20 ,At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus}; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL07-08-A08	At1g06780 / glycosyltransferase family 8		At1g06780 ,RAFL07-08-A08 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
		RAFL09-17-E24	At1g04140 / transducin / WD-40 repeat protein family		RAFL09-17-E24 ,At1g04140 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb|M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb|Q05946. ESTs gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101, gb|H36304, and gb|N65606 come from
		RAFL05-21-H02	At1g15920 / BTG1 binding factor 1 -related		RAFL05-21-H02 ,At1g15920 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus]
		RAFL09-17-J17	At1g49160 / protein kinase family		RAFL09-17-J17 ,At1g49160 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL09-07-D22	At1g16670 / protein kinase family		RAFL09-07-D22 ,At1g16670 protein kinase family protein contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from [Arabidopsis thaliana]
		RAFL04-18-D20	At1g78570 / NAD-dependent epimerase/dehydratase family		At1g78570 ,RAFL04-18-D20 NAD-dependent epimerase/dehydratase family protein similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family
		RAFL04-19-J24	At1g20920 / DEAD box RNA helicase, putative		At1g20920 ,RAFL04-19-J24 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-14-O09	At1g49710 / fucosyltransferase, putative		RAFL07-14-O09 ,At1g49710 fucosyltransferase-like protein, putative / FucT2, putative / FucTB, putative (FUT12) identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana]; similar to glycoprotein 3-alpha-L-fucosyltransferase A (SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam profile PF00852: Fucosyl transferase
		RAFL09-18-J20	At1g52740 / histone H2A, putative		RAFL09-18-J20 ,At1g52740 histone H2A, putative similar to histone H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-12-O04	At1g16010 / expressed protein		At1g16010 ,RAFL05-12-O04 magnesium transporter CorA-like family protein (MRS2-1) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
		RAFL07-13-L09	At1g33980 / expressed protein		At1g33980 ,RAFL07-13-L09 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens]
		RAFL05-08-M04	At1g61740 / expressed protein		RAFL05-08-M04 ,At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI:4079631
		RAFL03-01-D05	At1g07080 / expressed protein		RAFL03-01-D05 ,At1g07080 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to SP|P13284 Gamma-interferon inducible lysosomal thiol reductase precursor {Homo sapiens}; contains Pfam profile PF03227: Gamma interferon inducible lysosomal thiol reductase (GILT)
		RAFL08-13-A20	At1g33230 / expressed protein		At1g33230 ,RAFL08-13-A20 expressed protein
		RAFL05-09-P18	At1g53320 / F-box containing tubby family protein		RAFL05-09-P18 ,At1g53320 F-box family protein / tubby family protein (TULP7) similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby protein homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans] contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
		RAFL08-12-N08	At1g71040 / multicopper oxidase, type 1 family		At1g71040 ,RAFL08-12-N08 multi-copper oxidase type I family protein similar to SP|P07788 Spore coat protein A {Bacillus subtilis}; contains Pfam profile PF00394: Multicopper oxidase
		RAFL04-10-F21	At1g61250 / secretory carrier membrane protein		At1g61250 ,RAFL04-10-F21 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family
		RAFL07-18-M23	At1g10080 / unknown similar to AGI		RAFL07-18-M23 ,At1g10080 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-18-M23
		RAFL04-13-M11	At1g04260 / expressed protein		At1g04260 ,RAFL04-13-M11 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor [Mus musculus] GI:7716652; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
		RAFL07-11-D20	At1g16860 / expressed protein		At1g16860 ,RAFL07-11-D20 merozoite surface protein-related contains weak similarity to merozoite surface protein [Plasmodium falciparum] gi|12043655|gb|AAG47601
		RAFL05-08-H19	At1g68820 / expressed protein		RAFL05-08-H19 ,At1g68820 membrane protein, putative contains 7 transmembrane domains; similar to inhibitor of apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata nucleopolyhedrovirus]
		RAFL07-13-G24	At1g03040 / bHLH protein		At1g03040 ,RAFL07-13-G24 basic helix-loop-helix (bHLH) family protein component of the pyruvate dehydrogenase complex E3, contains PF|00010 helix-loop-helix DNA-binding domain. ESTs gb|T45640 and gb|T22783 come from this gene
		RAFL09-06-D22	At1g79690 / MutT/nudix family protein		At1g79690 ,RAFL09-06-D22 MutT/nudix family protein contains Pfam NUDIX domain [PF00293]; very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase [gi:15826361] [gi:15826360]
		RAFL09-15-I11	At1g37130 / nitrate reductase 2 (NR2)		RAFL09-15-I11 ,At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-16-H09	At1g20980 / SPL1-related protein -related		RAFL09-16-H09 ,At1g20980 SPL1-Related2 protein (SPL1R2) strong similarity to SPL1-Related2 protein [Arabidopsis thaliana] GI:6006427; contains Pfam profile PF03110: SBP domain
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL06-14-H20	At1g04850 / expressed protein		RAFL06-14-H20 ,At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain
		RAFL04-09-P08	At1g32490 / RNA helicase, putative		RAFL04-09-P08 ,At1g32490 RNA helicase, putative similar to ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL06-15-D19	At1g13580 / longevity assurance protein -related		RAFL06-15-D19 ,At1g13580 longevity-assurance (LAG1) family protein similar to Alternaria stem canker resistance protein (ASC1) [Lycopersicon esculentum] GI:7688742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1)
		RAFL03-07-O21	At1g19570 / dehydroascorbate reductase, putative		RAFL03-07-O21 ,At1g19570 dehydroascorbate reductase, putative similar to GB:BAA90672 from (Oryza sativa)
		RAFL08-10-J10	At1g04990 / zinc finger protein 2 -related		RAFL08-10-J10 ,At1g04990 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL09-13-D16	At1g53210 / expressed protein		RAFL09-13-D16 ,At1g53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand
		RAFL09-14-L13	At1g63420 / expressed protein		RAFL09-14-L13 ,At1g63420 expressed protein
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
		RAFL08-15-G22	At1g17440 / expressed protein		At1g17440 ,RAFL08-15-G22 transcription initiation factor IID (TFIID) subunit A family protein similar to SP|Q16514 Transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam profile PF03847: Transcription initiation factor TFIID subunit A
		RAFL09-16-K08	At1g70810 / C2 domain-containing protein		RAFL09-16-K08 ,At1g70810 C2 domain-containing protein similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana]
		RAFL06-13-N05	At1g47240 / NRAMP metal ion transporter 2, putative (NRAMP2)		RAFL06-13-N05 ,At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563
		RAFL07-13-I02	At1g30810 / expressed protein		At1g30810 ,RAFL07-13-I02 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein contains similarity to Swiss-Prot:P29375 retinoblastoma-binding protein 2 (RBBP-2) [Homo sapiens]; contains Pfam domains PF02375: jmjN domain and PF02373: jmjC domain; intron between exons 6 and 7 was required to circumvent a frameshift. There could be an underlying sequence error.
		RAFL05-09-A05	At1g63490 / RB-binding protein -related		At1g63490 ,RAFL05-09-A05 transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus musculus]; similar to Retinoblastoma-binding protein 2 (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam PF02373: jmjC domain
		RAFL05-08-K14	At1g72175 / C3HC4-type zinc finger protein family		At1g72175 ,RAFL05-08-K14 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL02-06-O21	At1g26665 / expressed protein		At1g26665 ,RAFL02-06-O21 expressed protein
		RAFL07-07-K16	At1g35670 / calcium-dependent protein kinase (CDPK)		RAFL07-07-K16 ,At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL06-07-P06	At1g72360 / ethylene responsive element binding factor (EREBP), putative		RAFL06-07-P06 ,At1g72360 ethylene-responsive element-binding protein, putative contains Pfam profile: PF00847 AP2 domain; similar to ethylene responsive element binding protein (GI:18496063)[Fagus sylvatica]
		RAFL05-09-D08	At1g66160 / expressed protein		RAFL05-09-D08 ,At1g66160 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain
		RAFL09-16-B05	At1g79975 / expressed protein		At1g79975 ,RAFL09-16-B05 expressed protein
		RAFL06-12-C16	At1g56200 / expressed protein		RAFL06-12-C16 ,At1g56200 expressed protein
		RAFL04-17-L18	At1g07670 / calcium-transporting ATPase 4, endoplasmic reticulum-type (calcium pump)		At1g07670 ,RAFL04-17-L18 calcium-transporting ATPase 4, endoplasmic reticulum-type (ECA4) identical to SP|Q9XES1 Calcium-transporting ATPase 4, endoplasmic reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana); contains InterPro Accession IPR006069: Cation transporting ATPase
		RAFL05-20-M22	At1g64740 / tubulin alpha-1 chain (TUA1)		RAFL05-20-M22 ,At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
		RAFL05-18-I06	At1g28710 / expressed protein		RAFL05-18-I06 ,At1g28710 expressed protein similar to GI:2827651, GI:7527728, GI:4406788, GI:6063544, GI:10764853 from [Arabidopsis thaliana]
		RAFL06-13-I03	At1g18360 / hydrolase, alpha/beta fold family		RAFL06-13-I03 ,At1g18360 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162,[Rattus norvegicus] GI:19697886; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL09-11-L17	At1g10410 / expressed protein		RAFL09-11-L17 ,At1g10410 expressed protein similar to ESTs gb|N96021 and gb|N96863
		RAFL07-08-G04	At1g68550 / AP2 domain transcription factor, putative		RAFL07-08-G04 ,At1g68550 AP2 domain-containing transcription factor, putative contains Pfam profile: PF00847 AP2 domain
		RAFL04-17-N08	At1g63900 / C3HC4-type zinc finger protein family		At1g63900 ,RAFL04-17-N08 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL09-18-B11	At1g13195 / C3HC4-type zinc finger protein family		RAFL09-18-B11 ,At1g13195 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL05-16-H11	At1g15130 / proline-rich protein family		RAFL05-16-H11 ,At1g15130 hydroxyproline-rich glycoprotein family protein
		RAFL08-12-O19	At1g04690 / potassium channel protein, putative		RAFL08-12-O19 ,At1g04690 potassium channel protein, putative nearly identical to K+ channel protein [Arabidopsis thaliana] GI:1063415; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
		RAFL05-05-F21	At1g34370 / zinc finger protein -related		At1g34370 ,RAFL05-05-F21 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL05-19-K20	At1g27510 / hypothetical protein		At1g27510 ,RAFL05-19-K20 expressed protein
		RAFL09-09-J08	At1g47530 / ripening regulated protein, putative		RAFL09-09-J08 ,At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL09-10-K04	At1g26270 / phosphatidylinositol 3- and 4-kinase family		RAFL09-10-K04 ,At1g26270 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL07-07-A03	At1g36730 / Eukaryotic translation initiation factor 5 -related		At1g36730 ,RAFL07-07-A03 eukaryotic translation initiation factor 5, putative / eIF-5, putative similar to SP|P55876 Eukaryotic translation initiation factor 5 (eIF-5) {Zea mays}; contains Pfam profiles PF02020: eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in IF2B/IF5
	Cluster:0-1				35	71	1084	3473	0.037540954	1.2388514	33
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL06-08-C03	At1g31580 / ORF1		At1g31580 ,RAFL06-08-C03 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905
		RAFL05-16-P12	At1g67740 / F12A21.13		RAFL05-16-P12 ,At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY) / L-arginine metabolising enzyme identical to SP:O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana]
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-04-M03	At1g32470 / glycine cleavage system H protein precursor -related		At1g32470 ,RAFL05-04-M03 glycine cleavage system H protein, mitochondrial, putative similar to SP|P25855 Glycine cleavage system H protein 1, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF01597: Glycine cleavage H-protein
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
		RAFL06-12-A07	At1g72930 / disease resistance protein (TIR class), putative		RAFL06-12-A07 ,At1g72930 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein.
		RAFL08-08-D01	At1g29660 / GDSL-motif lipase/hydrolase protein		RAFL08-08-D01 ,At1g29660 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL1 [Arabidopsis thaliana] GI:15054382; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-10-O24	At1g15820 / chlorophyll a/b-binding protein Lhcb6		At1g15820 ,RAFL06-10-O24 chlorophyll A-B binding protein, chloroplast (LHCB6) nearly identical to Lhcb6 protein [Arabidopsis thaliana] GI:4741960; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL07-08-C08	At1g64770 / expressed protein		RAFL07-08-C08 ,At1g64770 expressed protein
		RAFL02-04-K03	At1g20340 / plastocyanin		At1g20340 ,RAFL02-04-K03 plastocyanin similar to plastocyanin GI:1865683 from [Arabidopsis thaliana]
		RAFL02-06-A08	At1g06680 / photosystem II oxygen-evolving complex 23 (OEC23)		At1g06680 ,RAFL02-06-A08 photosystem II oxygen-evolving complex 23 (OEC23) JBC 14:211-238 (2002); identical to 23 kDa polypeptide of oxygen-evolving comlex (OEC) GB:CAA66785 GI:1769905 [Arabidopsis thaliana]
		RAFL06-13-H16	At1g11860 / aminomethyltransferase-related precursor protein		At1g11860 ,RAFL06-13-H16 aminomethyltransferase, putative similar to aminomethyltransferase, mitochondrial precursor SP:O49849 from [Flaveria anomala]
		RAFL04-15-A14	At1g12900 / calcium-binding protein, calreticulin -related		At1g12900 ,RAFL04-15-A14 glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative similar to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain
		RAFL04-13-J22	At1g09750 / expressed protein		At1g09750 ,RAFL04-13-J22 chloroplast nucleoid DNA-binding protein-related contains Pfam profile PF00026: Eukaryotic aspartyl protease;b similar to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) [Nicotiana tabacum]
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL07-07-I23	At1g56190 / phosphoglycerate kinase -related		RAFL07-07-I23 ,At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
		RAFL09-16-K05	At1g09340 / RNA-binding protein -related		RAFL09-16-K05 ,At1g09340 expressed protein
		RAFL05-08-B17	At1g16410 / cytochrome P450, putative		At1g16410 ,RAFL05-08-B17 cytochrome P450, putative similar to gb|AF069494 cytochrome P450 from Sinapis alba and is a member of the PF|00067 Cytochrome P450 family
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	Cluster:9-1				32	64	1087	3480	0.039249726	1.2952409	33
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL05-18-O20	At1g29395 / expressed protein		At1g29395 ,RAFL05-18-O20 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL08-08-I15	At1g11360 / expressed protein		RAFL08-08-I15 ,At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) [Lycopersicon esculentum]
		RAFL09-16-I11	At1g69490 / No apical meristem (NAM) protein family		At1g69490 ,RAFL09-16-I11 no apical meristem (NAM) family protein similar to N-term half of NAC domain protein NAM [Arabidopsis thaliana] GI:4325282
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL08-10-M13	At1g17020 / oxidoreductase, 2OG-Fe(II) oxygenase family		At1g17020 ,RAFL08-10-M13 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI:311658], leucoanthocyanidin dioxygenase [Malus domestica][SP|P51091]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
		RAFL07-16-P10	At1g77120 / alcohol dehydrogenase (ADH)		RAFL07-16-P10 ,At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana)
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL05-09-P03	At1g74020 / strictosidine synthase family		At1g74020 ,RAFL05-09-P03 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]; contains strictosidine synthase domain PF03088
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
		RAFL05-02-P11	At1g22370 / glycosyltransferase family		At1g22370 ,RAFL05-02-P11 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL07-13-F20	At1g78850 / curculin-like (mannose-binding) lectin family		At1g78850 ,RAFL07-13-F20 curculin-like (mannose-binding) lectin family protein low similarity to ser/thr protein kinase from Zea mays [GI:2598067]; contains Pfam lectin (probable mannose binding) domain PF01453
		RAFL05-05-E24	At1g13990 / expressed protein		At1g13990 ,RAFL05-05-E24 expressed protein
		RAFL05-10-D21	At1g54120 / expressed protein		At1g54120 ,RAFL05-10-D21 expressed protein
		RAFL09-10-A12	At1g68440 / expressed protein		RAFL09-10-A12 ,At1g68440 expressed protein
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
		RAFL09-10-F14	At1g63010 / expressed protein		At1g63010 ,RAFL09-10-F14 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
		RAFL05-07-A03	At1g17870 / expressed protein		At1g17870 ,RAFL05-07-A03 expressed protein contains 6 transmembrane domains; similar to predicted metalloproteases
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
1_21870001_21900000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-19-J02	At1g60260 / glycosyl hydrolase family 1		At1g60260 ,RAFL05-19-J02 pseudogene, glycosyl hydrolase family 1 contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]; blastp match of 60% identity and 6.4e-121 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-09-H06	At1g60260 / glycosyl hydrolase family 1		At1g60260 ,RAFL09-09-H06 pseudogene, glycosyl hydrolase family 1 contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]; blastp match of 60% identity and 6.4e-121 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}
2_480001_510000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-12-M13	At2g02070 / C2H2-type zinc finger protein -related		At2g02070 ,RAFL07-12-M13 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
3_9270001_9300000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	3	4416	0.0025160299	0.0100641195	4
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
2_16350001_16380000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	0	4513	0.0010281106	0.0010281106	1
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
3_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-18-O03	At3g21270 / Dof zinc finger protein		At3g21270 ,RAFL05-18-O03 Dof-type zinc finger domain-containing protein (ADOF2) identical to Dof zinc finger protein ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical to cDNA adof2 mRNA for Dof zinc finger protein GI:3608262; contains Pfam profile PF02701: Dof domain, zinc finger
1_27000001_27300000					A	B	C	D	P	P'	N
	Cluster:9-1				3	93	11	4556	0.0026107915	0.026107915	10
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
3_19320001_19350000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-A10	At3g52140 / tetratricopeptide repeat (TPR)-containing protein		At3g52140 ,RAFL04-20-A10 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain
3_17910001_17940000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-09-L11	At3g48360 / expressed protein		RAFL05-09-L11 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL07-16-B09	At3g48360 / expressed protein		RAFL07-16-B09 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
1_4890001_4920000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL08-12-J08	At1g14345 / expressed protein		At1g14345 ,RAFL08-12-J08 expressed protein contains one transmembrane domain
1_8400001_8430000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL05-01-K23	At1g23780 / F-box protein family		RAFL05-01-K23 ,At1g23780 F-box family protein contains Pfam PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only protein 7 {Homo sapiens}; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
		RAFL05-07-D16	At1g23800 / mitochondrial aldehyde dehydrogenase (ALDH3)		At1g23800 ,RAFL05-07-D16 aldehyde dehydrogenase, mitochondrial (ALDH3) nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 [Arabidopsis thaliana] gi|19850249|gb|AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein
1_26160001_26190000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL09-10-F09	At1g70370 / aromatic rich glyco protein -related		At1g70370 ,RAFL09-10-F09 BURP domain-containing protein / polygalacturonase, putative similar to polygalacturonase isoenzyme 1 beta subunit [Lycopersicon esculentum] GI:170480; contains Pfam profile PF03181: BURP domain
		RAFL04-13-K08	At1g70410 / carbonic anhydrase -related		RAFL04-13-K08 ,At1g70410 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase
5_18270001_18300000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
5_22800001_23100000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	9	4528	0.03396712	0.30570406	9
		RAFL03-10-B01	At5g57120 / expressed protein		At5g57120 ,RAFL03-10-B01 expressed protein weak similarity to SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
		RAFL04-15-B08	At5g57370 / expressed protein		At5g57370 ,RAFL04-15-B08 expressed protein low similarity to nucleic acid binding protein [Homo sapiens] GI:431953
1_28200001_28500000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	10	4518	0.045415256	0.4995678	11
		RAFL09-17-G19	At1g76180 / dehydrin -related		RAFL09-17-G19 ,At1g76180 dehydrin (ERD14) identical to SP|P42763 Dehydrin ERD14 {Arabidopsis thaliana}
		RAFL05-16-M10	At1g76200 / expressed protein		RAFL05-16-M10 ,At1g76200 expressed protein
2_5670001_5700000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL07-13-F17	At2g13790 / leucine-rich repeat protein kinase family		At2g13790 ,RAFL07-13-F17 leucine-rich repeat family protein / protein kinase family protein
3_19800001_19830000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL03-09-N15	At3g53420 / plasma membrane intrinsic protein 2A		RAFL03-09-N15 ,At3g53420 plasma membrane intrinsic protein 2A (PIP2A) / aquaporin PIP2.1 (PIP2.1) identical to plasma membrane intrinsic protein 2A SP: P43286 from [Arabidopsis thaliana]
5_18840001_18870000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-16-N08	At5g47110 / Lil3 protein		RAFL04-16-N08 ,At5g47110 lil3 protein, putative similar to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
1_4080001_4110000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
2_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:2-0				3	147	13	4500	0.013429119	0.16114943	12
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL06-07-L23	At2g39670 / expressed protein		RAFL06-07-L23 ,At2g39670 radical SAM domain-containing protein similar to hypothetical protein PIR|S76698|S76698 contains Pfam profile PF04055: radical SAM domain protein
3_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	7	4494	0.03678091	0.29424727	8
		RAFL08-14-F20	At3g20920 / expressed protein		RAFL08-14-F20 ,At3g20920 translocation protein-related contains weak similarity to Drosophila translocation protein 1 (GI:558181) [Drosophila melanogaster]
		RAFL05-17-O13	At3g21230 / 4-coumarate:CoA ligase (4-coumaroyl-CoA synthase) (4CL), putative		At3g21230 ,RAFL05-17-O13 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL) similar to 4CL2 [gi:12229665] and 4CL1 [gi:12229649] from [Arabidopsis thaliana], 4CL1 [gi:12229631] from Nicotiana tabacum
4_7950001_7980000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-13-M21	At4g15880 / Ulp1 protease family		At4g15880 ,RAFL05-13-M21 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; low similarity to sentrin/SUMO-specific protease [Homo sapiens] GI:6906859; identical to cDNA hypothetical protein, partial (1189 bp) GI:2326349
1_16860001_16890000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-03-L12	At1g47128 / cysteine proteinase RD21A		RAFL05-03-L12 ,At1g47128 cysteine proteinase (RD21A) / thiol protease identical to SP|P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana}, thiol protease RD21A SP:P43297 from [Arabidopsis thaliana]
3_18210001_18240000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-07-G15	At3g49120 / peroxidase, putative		At3g49120 ,RAFL09-07-G15 peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677
1_9960001_9990000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
1_22470001_22500000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
4_11820001_11850000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL04-09-K07	At4g25050 / acyl carrier protein family		RAFL04-09-K07 ,At4g25050 acyl carrier family protein / ACP family protein similar to Acyl carrier protein, chloroplast precursor from {Spinacia oleracea} SP|P23235, {Casuarina glauca} SP|P93092; contains InterPro accession IPR003881: Isochorismatase
1_26880001_26910000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	3	4395	0.028701013	0.11480405	4
		RAFL09-16-J21	At1g72330 / alanine aminotransferase, putative		At1g72330 ,RAFL09-16-J21 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa
		RAFL06-07-P06	At1g72360 / ethylene responsive element binding factor (EREBP), putative		RAFL06-07-P06 ,At1g72360 ethylene-responsive element-binding protein, putative contains Pfam profile: PF00847 AP2 domain; similar to ethylene responsive element binding protein (GI:18496063)[Fagus sylvatica]
1_22800001_23100000					A	B	C	D	P	P'	N
	Cluster:10-2				4	105	10	4544	2.3608547E-4	0.0023608548	10
		RAFL08-15-K01	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-15-K01 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-03-G20	At1g62600 / flavin-containing monooxygenase (FMO) family		RAFL05-03-G20 ,At1g62600 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase 2 from Cavia porcellus [SP|P36366]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
		RAFL04-12-E05	At1g63010 / expressed protein		At1g63010 ,RAFL04-12-E05 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
		RAFL08-13-K06	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-13-K06 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
1_4110001_4140000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-B11	At1g12120 / expressed protein		At1g12120 ,RAFL08-12-B11 expressed protein contains Pfam domain PF05904: Plant protein of unknown function (DUF863)
1_18930001_18960000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL08-09-I24	At1g52040 / jacalin lectin family		RAFL08-09-I24 ,At1g52040 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
		RAFL09-14-K04	At1g52040 / jacalin lectin family		At1g52040 ,RAFL09-14-K04 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
	Cluster:2-2				1	52	2	4608	0.033719275	0.06743855	2
		RAFL04-09-C15	At1g52030 / myrosinase binding protein, putative		At1g52030 ,RAFL04-09-C15 myrosinase-binding protein, putative (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding protein-like f-AtMBP [Arabidopsis thaliana]; similar to myrosinase binding protein GI:1711295 from [Brassica napus]; contains Pfam PF01419: Jacalin-like lectin domain; identical to cDNA myrosinase-binding protein-like protein (MBP1.2) GI:6760446
1_19890001_19920000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-15-K18	At1g54410 / dehydrin protein family		RAFL06-15-K18 ,At1g54410 dehydrin family protein contains Pfam domain, PF00257: Dehydrin
2_12900001_13200000					A	B	C	D	P	P'	N
	Cluster:3-0				4	229	15	4415	0.013005282	0.19507922	15
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
		RAFL07-17-K15	At2g31040 / expressed protein		RAFL07-17-K15 ,At2g31040 ATP synthase protein I -related contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I [Synechococcus sp.]
		RAFL08-14-P10	At2g30410 / TCP1-chaperonin cofactor A isolog		RAFL08-14-P10 ,At2g30410 tubulin folding cofactor A (KIESEL) identical to cDNA tubulin folding cofactor A, GI:20514256, SP|O04350 Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A homolog) {Arabidopsis thaliana}
		RAFL09-07-B08	At2g30970 / aspartate aminotransferase, mitochondrial (transaminase A/Asp1)		At2g30970 ,RAFL09-07-B08 aspartate aminotransferase, mitochondrial / transaminase A (ASP1) identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
5_3630001_3660000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	3	4554	0.004895142	0.019580567	4
		RAFL07-10-E04	At5g11420 / expressed protein		RAFL07-10-E04 ,At5g11420 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
		RAFL07-11-I06	At5g11420 / expressed protein		RAFL07-11-I06 ,At5g11420 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
4_12450001_12480000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-21-A21	At4g26850 / expressed protein		RAFL05-21-A21 ,At4g26850 expressed protein
1_29490001_29520000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-09-G04	At1g79340 / putative latex-abundant protein		At1g79340 ,RAFL05-09-G04 latex-abundant protein, putative (AMC7) / caspase family protein similar to latex-abundant protein [Hevea brasiliensis] gb:AAD13216; contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain
5_8070001_8100000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-20-B22	At5g24020 / septum site-determining MinD (dbj|BAA90261.1)		RAFL04-20-B22 ,At5g24020 septum site-determining protein (MIND) identical to MinD [Arabidopsis thaliana] GI:6759277; contains Pfam PF00991 : ParA family ATPase
2_17700001_17730000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-18-J03	At2g42690 / lipase, putative		RAFL05-18-J03 ,At2g42690 lipase, putative similar to lipase [Dianthus caryophyllus] GI:4103627; contains Pfam profile PF01764: Lipase
1_29640001_29670000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-03-J16	At1g79730 / proline-rich protein family		RAFL05-03-J16 ,At1g79730 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965
4_13170001_13200000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-11-A20	At4g28760 / expressed protein		RAFL07-11-A20 ,At4g28760 expressed protein predicted protein. Arabidopsis thaliana
1_2610001_2640000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-16-H06	At1g08360 / 60S ribosomal protein L10A (RPL10aA)		At1g08360 ,RAFL04-16-H06 60S ribosomal protein L10A (RPL10aA) similar to 60S ribosomal protein L10A GB:AAC73045 GI:3860277 from [Arabidopsis thaliana]
4_9000001_12000000					A	B	C	D	P	P'	N
	Cluster:6-0				9	131	95	4428	0.0037356832	0.104599126	28
		RAFL09-09-G01	At4g19840 / lectin-related		At4g19840 ,RAFL09-09-G01 lectin-related similar to PP2 lectin polypeptide [Cucurbita maxima] GI:410437
		RAFL05-01-C20	At4g23670 / major latex protein (MLP)-related		At4g23670 ,RAFL05-01-C20 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL04-10-E08	At4g25500 / arginine/serine-rich splicing factor RSp40		At4g25500 ,RAFL04-10-E08 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana}
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL04-18-D10	At4g24520 / NADPH-ferrihemoprotein reductase (NADPH-cytochrome p450 reductase), putative		At4g24520 ,RAFL04-18-D10 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-ferrihemoprotein reductase NADPH-cytochrome P450 oxydoreductase isoform 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183562, SP|P37116 NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR) [Vigna radiata] {Phaseolus aureus}
		RAFL04-18-L18	At4g24120 / expressed protein		At4g24120 ,RAFL04-18-L18 transporter, putative similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] GI:10770865; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL09-17-I10	At4g19110 / protein kinase, putative		At4g19110 ,RAFL09-17-I10 protein kinase, putative contains protein kinase domain, Pfam:PF00069
5_7020001_7050000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-16-I09	At5g20830 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase/SUS1)		At5g20830 ,RAFL05-16-I09 sucrose synthase / sucrose-UDP glucosyltransferase (SUS1) identical to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana}
2_18300001_18600000					A	B	C	D	P	P'	N
	Cluster:5-1				4	278	9	4372	0.0060573313	0.054515984	9
		RAFL08-09-K17	At2g44670 / senescence-associated protein -related		RAFL08-09-K17 ,At2g44670 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana];
		RAFL05-16-D13	At2g44500 / axi 1 protein from Nicotiana tabacum -related		RAFL05-16-D13 ,At2g44500 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'axi 1 protein from Nicotiana tabacum -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
		RAFL05-19-F23	At2g44520 / UbiA prenyltransferase family		At2g44520 ,RAFL05-19-F23 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae}
		RAFL08-18-G13	At2g44680 / casein kinase II beta chain, putative		RAFL08-18-G13 ,At2g44680 casein kinase II beta chain, putative similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana] SWISS-PROT:O81275
2_14490001_14520000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL11-13-L01	At2g34520 / ribosomal protein S14p family, mitochondrial precursor		At2g34520 ,RAFL11-13-L01 ribosomal protein S14 mitochondrial family protein identical to ribosomal protein S14 {Arabidopsis thaliana} NCBI_gi:4583554
		RAFL06-08-D06	At2g34590 / pyruvate dehydrogenase E1 beta subunit -related		At2g34590 ,RAFL06-08-D06 transketolase family protein similar to SP|O66113 Pyruvate dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain
	Cluster:2-2				1	52	3	4607	0.044709165	0.13412748	3
		RAFL04-17-F09	At2g34510 / expressed protein		At2g34510 ,RAFL04-17-F09 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
4_17310001_17340000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-21-P16	At4g39460 / mitochondrial carrier protein family		At4g39460 ,RAFL05-21-P16 mitochondrial substrate carrier family protein
5_25410001_25440000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	5	4508	0.019410595	0.11646357	6
		RAFL07-09-K24	At5g64300 / GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase (emb|CAA03884.1)		At5g64300 ,RAFL07-09-K24 riboflavin biosynthesis protein, putative (RIBA) similar to SP|P47924 {Arabidopsis thaliana}, SP|P51695 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Bacillus amyloliquefaciens}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase
		RAFL07-09-O18	At5g64290 / oxoglutarate/malate translocator, putative		At5g64290 ,RAFL07-09-O18 oxoglutarate/malate translocator, putative similar to SWISS-PROT:Q41364 2-oxoglutarate/malate translocator, chloroplast precursor. [Spinach]{Spinacia oleracea}
5_22620001_22650000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	0	4528	8.321486E-4	8.321486E-4	1
		RAFL04-13-A16	At5g56600 / profilin 5		At5g56600 ,RAFL04-13-A16 profilin 5 (PRO5) (PRF3) identical to SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
		RAFL04-18-L19	At5g56670 / 40S ribosomal protein S30 (RPS30C)		RAFL04-18-L19 ,At5g56670 40S ribosomal protein S30 (RPS30C)
5_3270001_3300000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	2	4487	0.007905076	0.023715228	3
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
1_19500001_19530000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-C18	At1g53400 / expressed protein		RAFL05-08-C18 ,At1g53400 expressed protein
4_13500001_13530000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-12-O13	At4g29670 / thioredoxin family		RAFL05-12-O13 ,At4g29670 thioredoxin family protein contains Pfam profile PF00085: Thioredoxin
5_25020001_25050000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL11-10-F22	At5g63160 / expressed protein		At5g63160 ,RAFL11-10-F22 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
3_18150001_18180000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL08-12-E20	At3g48990 / AMP-dependent synthetase and ligase family		At3g48990 ,RAFL08-12-E20 AMP-dependent synthetase and ligase family protein similar to peroxisomal-coenzyme A synthetase (FAT2) [gi:586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI:20799714
		RAFL09-06-C22	At3g48990 / AMP-dependent synthetase and ligase family		At3g48990 ,RAFL09-06-C22 AMP-dependent synthetase and ligase family protein similar to peroxisomal-coenzyme A synthetase (FAT2) [gi:586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI:20799714
5_7980001_8010000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL09-15-M15	At5g23740 / 40S ribosomal protein S11 (RPS11C)		RAFL09-15-M15 ,At5g23740 40S ribosomal protein S11 (RPS11C)
		RAFL05-16-O05	At5g23820 / expressed protein		At5g23820 ,RAFL05-16-O05 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain
5_24300001_24330000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL02-07-L08	At5g61160 / transferase family		At5g61160 ,RAFL02-07-L08 transferase family protein similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234; contains Pfam profile PF02458 transferase family
4_5430001_5460000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL08-18-K16	At4g10480 / alpha NAC -related		RAFL08-18-K16 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
		RAFL05-12-D01	At4g10480 / alpha NAC -related		RAFL05-12-D01 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
3_15870001_15900000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	1	4347	0.0011607888	0.0023215776	2
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
1_4200001_4230000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL06-10-N03	At1g12410 / ATP-dependent Clp protease proteolytic subunit (ClpR2)		At1g12410 ,RAFL06-10-N03 ATP-dependent Clp protease proteolytic subunit (ClpP2) identical to nClpP2 GI:5360589 from [Arabidopsis thaliana]
		RAFL05-10-E01	At1g12370 / type II CPD photolyase PHR1 (PHR1)		At1g12370 ,RAFL05-10-E01 type II CPD photolyase PHR1 (PHR1) nearly identical to type II CPD photolyase PHR1 [Arabidopsis thaliana] GI:2984707; similar to class II DNA photolyase (GI:5081541) [Chlamydomonas reinhardtii]; supporting cDNA gi|2984706|gb|AF053365.1|AF053365
4_4710001_4740000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	1	4397	0.009291402	0.018582804	2
		RAFL09-17-I12	At4g08960 / phosphotyrosyl phosphatase activator protein -related		RAFL09-17-I12 ,At4g08960 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
		RAFL06-11-F02	At4g08980 / F-box protein family, AtFBW2		At4g08980 ,RAFL06-11-F02 F-box family protein (FBW2) contains similarity to N7 protein GI:3273101 from [Medicago truncatula]
1_24870001_24900000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL08-11-D22	At1g67360 / stress related protein -related		At1g67360 ,RAFL08-11-D22 rubber elongation factor (REF) family protein contains Pfam profile: PF05755 rubber elongation factor protein (REF)
		RAFL11-12-J24	At1g67360 / stress related protein -related		RAFL11-12-J24 ,At1g67360 rubber elongation factor (REF) family protein contains Pfam profile: PF05755 rubber elongation factor protein (REF)
1_600001_630000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-16-I05	At1g02816 / expressed protein		RAFL04-16-I05 ,At1g02816 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
3_2310001_2340000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL04-17-J04	At3g07310 / expressed protein		RAFL04-17-J04 ,At3g07310 expressed protein
5_6390001_6420000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	1	4512	0.003019041	0.006038082	2
		RAFL11-11-J05	At5g19120 / conglutin gamma - like protein		RAFL11-11-J05 ,At5g19120 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max}
		RAFL03-09-J09	At5g19120 / conglutin gamma - like protein		RAFL03-09-J09 ,At5g19120 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max}
5_720001_750000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-16-B20	At5g03120 / expressed protein		At5g03120 ,RAFL04-16-B20 expressed protein
2_18840001_18870000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	3	4350	0.038523052	0.15409221	4
		RAFL11-06-I12	At2g45950 / E3 ubiquitin ligase SCF complex subunit SKP1/ASK1-related		At2g45950 ,RAFL11-06-I12 SKP1 family protein similar to glycoprotein FP21 SP:P52285 from [Dictyostelium discoideum]; contains Pfam profile PF01466: Skp1 family, dimerisation domain
		RAFL05-19-H24	At2g45990 / expressed protein		RAFL05-19-H24 ,At2g45990 expressed protein
	Cluster:3-2				1	36	4	4622	0.039065886	0.15626355	4
		RAFL06-15-B17	At2g45960 / plasma membrane intrinsic protein 1B		RAFL06-15-B17 ,At2g45960 plasma membrane intrinsic protein 1B (PIP1B) / aquaporin PIP1.2 (PIP1.2) / transmembrane protein A (TMPA) identical to plasma membrane intrinsic protein 1B SP:Q06611 from [Arabidopsis thaliana]
3_20100001_20400000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	13	4545	0.04357712	0.52292544	12
		RAFL09-09-I17	At3g54920 / polysaccharide lyase family 1 (pectate lyase)		At3g54920 ,RAFL09-09-I17 pectate lyase, putative / powdery mildew susceptibility protein (PMR6) identical to powdery mildew susceptibility protein [Arabidopsis thaliana] GI:22506901; similar to pectate lyase 2 GP:6606534 from [Musa acuminata]
		RAFL05-16-C09	At3g54400 / nucleoid DNA-binding - like protein		RAFL05-16-C09 ,At3g54400 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease
2_15300001_15600000					A	B	C	D	P	P'	N
	Cluster:2-0				3	147	14	4499	0.015928537	0.20707098	13
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL06-08-J02	At2g37130 / peroxidase, putative (ATP2a)		RAFL06-08-J02 ,At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) identical to SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
1_3900001_3930000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-03-G09	At1g11630 / pentatricopeptide (PPR) repeat-containing protein		At1g11630 ,RAFL05-03-G09 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
5_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:5-1				16	266	125	4256	0.017493017	0.48980445	28
		RAFL11-03-N11	At5g20020 / GTP-binding nuclear protein (RAN-2)		RAFL11-03-N11 ,At5g20020 Ras-related GTP-binding nuclear protein (RAN-2) identical to GTP-binding nuclear protein RAN-2 SP:P41917 from [Arabidopsis thaliana]
		RAFL07-17-O15	At5g19180 / RUB-activating enzyme ECR1		At5g19180 ,RAFL07-17-O15 ubiquitin activating enzyme, putative (ECR1) identical to putative ubiquitin activating enzyme E1 [Arabidopsis thaliana] GI:2952433; similar to NEDD8 activating enzyme [Mus musculus] GI:17061821
		RAFL07-17-N07	At5g23890 / expressed protein		At5g23890 ,RAFL07-17-N07 expressed protein weak similarity to SP|P12957 Caldesmon (CDM) {Gallus gallus}
		RAFL08-12-D06	At5g23660 / nodulin MtN3 family protein		At5g23660 ,RAFL08-12-D06 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]
		RAFL08-11-O19	At5g23670 / serine C-palmitoyltransferase, putative		At5g23670 ,RAFL08-11-O19 serine C-palmitoyltransferase (LCB2) identical to serine palmitoyltransferase [Arabidopsis thaliana] GI:9309380; similar to serine palmitoyltransferase from Solanum tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL09-16-N12	At5g19820 / expressed protein		RAFL09-16-N12 ,At5g19820 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130 PBS lyase HEAT-like repeat
		RAFL05-15-P17	At5g19150 / expressed protein		RAFL05-15-P17 ,At5g19150 carbohydrate kinase family contains Pfam profile PF01256: Carbohydrate kinase
		RAFL04-17-B06	At5g22060 / DnaJ protein, putative		RAFL04-17-B06 ,At5g22060 DNAJ heat shock protein, putative strong similarity to SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL06-07-D07	At5g20020 / GTP-binding nuclear protein (RAN-2)		RAFL06-07-D07 ,At5g20020 Ras-related GTP-binding nuclear protein (RAN-2) identical to GTP-binding nuclear protein RAN-2 SP:P41917 from [Arabidopsis thaliana]
		RAFL07-12-C22	At5g19130 / GPAA1 - like protein		At5g19130 ,RAFL07-12-C22 GPI transamidase component family protein / Gaa1-like family protein contains Pfam profile: PF04114 Gaa1-like, GPI transamidase component
		RAFL07-08-I10	At5g22460 / esterase/lipase/thioesterase family		At5g22460 ,RAFL07-08-I10 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379
		RAFL04-20-B01	At5g21010 / expressed protein		At5g21010 ,RAFL04-20-B01 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL04-14-K03	At5g18590 / RanGAP1 interacting protein		At5g18590 ,RAFL04-14-K03 kelch repeat-containing protein identical to RanGAP1 interacting protein (GI:21950739) [Arabidopsis thaliana]; similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe]; contains Pfam PF01344: Kelch motif (5 repeats)
		RAFL05-08-E17	At5g22330 / Ruv DNA-helicase-related protein		At5g22330 ,RAFL05-08-E17 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus]
		RAFL05-15-M17	At5g23390 / expressed protein		At5g23390 ,RAFL05-15-M17 expressed protein contains Pfam profile: PF04842 plant protein of unknown function (DUF639)
		RAFL04-13-H19	At5g18620 / DNA-dependent ATPase, putative		RAFL04-13-H19 ,At5g18620 DNA-dependent ATPase, putative similar to DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00249: Myb-like DNA-binding domain
2_14790001_14820000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-12-E13	At2g35260 / expressed protein		At2g35260 ,RAFL09-12-E13 expressed protein
5_26160001_26190000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-08-B20	At5g66190 / ferredoxin--NADP(+) reductase (adrenodoxin reductase), putative		At5g66190 ,RAFL06-08-B20 ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP|P10933, {Mesembryanthemum crystallinum} SP|P41343, {Spinacia oleracea} SP|P00455; identical to cDNA ferredoxin-NADP+ reductase precursor (petH) GI:5730138
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL02-09-F24	At5g66170 / senescence-associated protein		RAFL02-09-F24 ,At5g66170 senescence-associated family protein contains similarity to ketoconazole resistant protein GI:928938 and senescence-associated protein GI:1046268 from [Arabidopsis thaliana]
2_16980001_17010000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-18-L20	At2g40890 / cytochrome P450 98A3		RAFL05-18-L20 ,At2g40890 cytochrome P450 98A3, putative (CYP98A3) identical to Cytochrome P450 98A3 (SP|O22203) [Arabidopsis thaliana]; similar to gi:17978651 from Pinus taeda
2_1170001_1200000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-A06	At2g03890 / phosphatidylinositol 3- and 4-kinase family		At2g03890 ,RAFL08-09-A06 phosphatidylinositol 3- and 4-kinase family protein low similarity to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
5_14130001_14160000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-14-K21	At5g36700 / phosphoglycolate phosphatase, putative		At5g36700 ,RAFL06-14-K21 phosphoglycolate phosphatase, putative similar to phosphoglycolate phosphatase precursor [Chlamydomonas reinhardtii] GI:15982558; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
3_5760001_5790000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-17-C14	At3g16910 / AMP-dependent synthetase and ligase family		RAFL05-17-C14 ,At3g16910 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 7 AMPBP7 (AMPBP7) GI:20799722
1_27150001_27180000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-09-L10	At1g73180 / expressed protein		RAFL07-09-L10 ,At1g73180 eukaryotic translation initiation factor-related similar to eukaryotic translation initiation factor 2A (GI:21956484) [Homo sapiens]; similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Swiss-Prot:P55884) [Homo sapiens]
1_20010001_20040000					A	B	C	D	P	P'	N
	Cluster:0-2				3	76	1	4583	1.850166E-5	3.700332E-5	2
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
4_1_300000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	6	4595	0.0046263156	0.03238421	7
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
3_9000001_12000000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	74	4512	0.0093790805	0.21571885	23
		RAFL05-10-E23	At3g27820 / monodehydroascorbate reductase, putative		At3g27820 ,RAFL05-10-E23 monodehydroascorbate reductase, putative similar to cytosolic monodehydroascorbate reductase GB:BAA77214 [Oryza sativa]
		RAFL07-12-I09	At3g29240 / chloroplast lumen common protein family		At3g29240 ,RAFL07-12-I09 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
		RAFL05-18-K22	At3g26450 / major latex protein (MLP)-related		RAFL05-18-K22 ,At3g26450 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-16-M01	At3g25830 / myrcene/ocimene synthase, putative		At3g25830 ,RAFL09-16-M01 myrcene/ocimene synthase, putative similar to myrcene/ocimene synthase [Arabidopsis thaliana] GI:9957293; contains Pfam profiles PF03936: Terpene synthase family, metal binding domain, PF01397: Terpene synthase, N-terminal domain
		RAFL08-19-G11	At3g28270 / At14a		At3g28270 ,RAFL08-19-G11 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
	Cluster:4-1				11	299	68	4285	0.018645054	0.42883623	23
		RAFL07-17-D11	At3g26300 / cytochrome P450 family		At3g26300 ,RAFL07-17-D11 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450
		RAFL07-09-E19	At3g27700 / RNA recognition motif (RRM) - containing protein		RAFL07-09-E19 ,At3g27700 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif
		RAFL07-08-F20	At3g24800 / E3 ubiquitin ligase, PRT1		RAFL07-08-F20 ,At3g24800 PRT1 protein (PRT1) E3, N-end rule ubiquitin ligase, contains two RING finger domain; identical to PRT1 [Arabidopsis thaliana] GI:3319884
		RAFL05-08-N12	At3g27080 / TOM20 -related		RAFL05-08-N12 ,At3g27080 mitochondrial import receptor subunit TOM20-3 / translocase of outer membrane 20 kDa subunit 3 (TOM20-3) identical to mitochondrial import receptor subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
		RAFL05-13-E16	At3g26420 / glycine-rich RNA-binding protein		At3g26420 ,RAFL05-13-E16 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
		RAFL06-07-A02	At3g27240 / cytochrome c -related		RAFL06-07-A02 ,At3g27240 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
		RAFL03-09-J10	At3g27925 / DegP protease		RAFL03-09-J10 ,At3g27925 DegP protease, putative SP:022609; almost identical to DegP protease precursor GB:AF028842 from [Arabidopsis thaliana] (J. Biol. Chem. 273 (12), 7094-7098 (1998))
		RAFL06-11-N20	At3g25220 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP15-1)		At3g25220 ,RAFL06-11-N20 FK506-binding protein 2-1 (FKBP15-1) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38935 FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) {Arabidopsis thaliana}, immunophilin (FKBP15-1) GB:U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 93 (14), 6964-6969 (1996))
		RAFL09-09-A19	At3g27090 / gda-1 -related		RAFL09-09-A19 ,At3g27090 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
		RAFL05-03-N24	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-03-N24 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL06-10-D09	At3g25230 / peptidylprolyl isomerase (ROF1)		RAFL06-10-D09 ,At3g25230 peptidyl-prolyl cis-trans isomerase / FK506-binding protein (ROF1) identical to rotamase FKBP (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252 (5), 510-517 (1996))
	Cluster:0-1				5	101	74	4483	0.03297345	0.75838935	23
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL09-14-L24	At3g28220 / expressed protein		At3g28220 ,RAFL09-14-L24 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
		RAFL08-09-L12	At3g26060 / peroxiredoxin -related		RAFL08-09-L12 ,At3g26060 peroxiredoxin Q, putative similar to peroxiredoxin Q [Sedum lineare] GI:6899842; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
4_15300001_15600000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	21	4575	0.04238358	0.7205209	17
		RAFL08-11-N01	At4g34710 / arginine decarboxylase SPE2		At4g34710 ,RAFL08-11-N01 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
		RAFL09-13-D07	At4g34710 / arginine decarboxylase SPE2		RAFL09-13-D07 ,At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
4_1410001_1440000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-13-C07	At4g03280 / Rieske FeS protein (component of cytochrome B6-F complex)		At4g03280 ,RAFL06-13-C07 cytochrome B6-F complex iron-sulfur subunit, chloroplast / Rieske iron-sulfur protein / plastoquinol-plastocyanin reductase (petC) identical to gi:9843639; identical to cDNA rieske iron-sulfur protein precursor (petC) GI:5725449
4_9300001_9600000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	4	4497	0.016411448	0.08205724	5
		RAFL09-17-E21	At4g19410 / pectinacetylesterase, putative		RAFL09-17-E21 ,At4g19410 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]
		RAFL09-10-G07	At4g18950 / protein kinase - like protein		At4g18950 ,RAFL09-10-G07 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674
4_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:8-0				4	105	22	4532	0.0028403332	0.036924332	13
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
	Cluster:7-2				3	61	23	4576	0.0051187878	0.06654424	13
		RAFL08-17-I12	At4g38550 / Phospholipase like protein		RAFL08-17-I12 ,At4g38550 expressed protein
		RAFL04-09-M02	At4g38400 / expansin protein family (EXPL2)		At4g38400 ,RAFL04-09-M02 expansin family protein (EXPL2) contains Pfam profile: PF01357 pollen allergen; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL09-15-P17	At4g38550 / Phospholipase like protein		At4g38550 ,RAFL09-15-P17 expressed protein
	Cluster:1-0				3	146	23	4491	0.048582267	0.6315695	13
		RAFL06-13-F04	At4g38160 / expressed protein		At4g38160 ,RAFL06-13-F04 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF
		RAFL06-11-A22	At4g38770 / proline-rich protein family		At4g38770 ,RAFL06-11-A22 proline-rich family protein (PRP4) similar to proline-rich protein [Arabidopsis thaliana] gi|6782442|gb|AAF28388; contains proline-rich extensin domains, INTERPRO:IPR002965
		RAFL07-14-E15	At4g38520 / protein phosphatase-2c -related		At4g38520 ,RAFL07-14-E15 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain;
3_10290001_10320000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
5_5910001_5940000					A	B	C	D	P	P'	N
	Cluster:1-2				5	169	2	4487	1.3512496E-6	2.7024992E-6	2
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
	Cluster:0-2				2	77	5	4579	0.0056326813	0.011265363	2
		RAFL08-16-E05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL08-16-E05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-09-A21	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-09-A21 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
5_15930001_15960000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-13-A19	At5g40510 / sucrose cleavage protein -related		RAFL06-13-A19 ,At5g40510 expressed protein
Chromosome:3					A	B	C	D	P	P'	N
	Cluster:2-1				67	177	850	3569	0.002774971	0.09157405	33
		RAFL05-09-L11	At3g48360 / expressed protein		RAFL05-09-L11 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL06-08-P20	At3g07110 / 60S ribosomal protein L13A (RPL13aA)		RAFL06-08-P20 ,At3g07110 60S ribosomal protein L13A (RPL13aA) similar to ribosomal protein L13A GB:O49885 [Lupinus luteus]
		RAFL05-03-N22	At3g15410 / leucine rich repeat protein family		RAFL05-03-N22 ,At3g15410 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596; identical to leucine-rich repeat protein [Arabidopsis thaliana] gi|2760084|emb|CAA76000
		RAFL04-12-O11	At3g27740 / carbamoyl-phosphate synthase (glutamine-hydrolyzing) (glutamine-dependent carbamoyl-phosphate synthase) small subunit		At3g27740 ,RAFL04-12-O11 carbamoyl-phosphate synthase [glutamine-hydrolyzing] (CARA) / glutamine-dependent carbamoyl-phosphate synthase small subunit identical to carbamoyl phosphate synthetase small subunit GI:2462781 [Arabidopsis thaliana]
		RAFL07-10-D04	At3g61150 / homeodomain protein, GLABRA2 like 1 (HD-GL2-1)		At3g61150 ,RAFL07-10-D04 homeobox-leucine zipper family protein / homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis thaliana, EMBL:AF077335
		RAFL09-15-G07	At3g62250 / ubiquitin extension protein (UBQ5)/40S ribosomal protein S27A (RPS27aC)		RAFL09-15-G07 ,At3g62250 ubiquitin extension protein 5 (UBQ5) / 40S ribosomal protein S27A (RPS27aC) identical to GI:166933, GI:166934
		RAFL07-18-N03	At3g59780 / expressed protein		RAFL07-18-N03 ,At3g59780 expressed protein
		RAFL06-08-B12	At3g01190 / peroxidase, putative		RAFL06-08-B12 ,At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) identical to SP|Q43735 Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a) {Arabidopsis thaliana}
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL04-15-J09	At3g58140 / phenylalanine-tRNA synthetase-related protein		At3g58140 ,RAFL04-15-J09 phenylalanyl-tRNA synthetase class IIc family protein similar to phenylalanine-tRNA synthetase [Homo sapiens] GI:3983103; contains Pfam profile PF01409: tRNA synthetases class II core domain (F)
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-09-H09	At3g48930 / 40S ribosomal protein S11 (RPS11A)		At3g48930 ,RAFL06-09-H09 40S ribosomal protein S11 (RPS11A)
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL02-02-B08	At3g02540 / RAD23 -related		At3g02540 ,RAFL02-02-B08 ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain;
		RAFL02-02-A04	At3g54890 / light-harvesting chlorophyll a/b binding protein		At3g54890 ,RAFL02-02-A04 chlorophyll A-B binding protein / LHCI type I (CAB) identical to chlorophyll A/B-binding protein [Arabidopsis thaliana] GI:16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-11-J16	At3g15950 / expressed protein		RAFL07-11-J16 ,At3g15950 DNA topoisomerase-related similar to DNA topoisomerase IV subunit A (GI:26454107) [Mycoplasma penetrans]
		RAFL04-17-H07	At3g57610 / adenylosuccinate synthetase		At3g57610 ,RAFL04-17-H07 adenylosuccinate synthetase (ADSS) identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) [Arabidopsis thaliana]
		RAFL09-06-J23	At3g16470 / jacalin lectin family		RAFL09-06-J23 ,At3g16470 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767
		RAFL04-13-D06	At3g23940 / dihydroxyacid dehydratase -related		RAFL04-13-D06 ,At3g23940 dehydratase family contains Pfam profile: PF00920 dehydratase family
		RAFL07-18-J24	At3g02690 / expressed integral membrane protein		RAFL07-18-J24 ,At3g02690 integral membrane family protein similar to PecM protein (GI:5852331) {Vogesella indigofera} and PecM protein (SP:P42194) [Erwinia chrysanthemi]
		RAFL06-14-I03	At3g60770 / 40S ribosomal protein S13 (RPS13A)		RAFL06-14-I03 ,At3g60770 40S ribosomal protein S13 (RPS13A) AtRPS13A mRNA for cytoplasmic ribosomal protein S13, Arabidopsis thaliana,AB031739
		RAFL06-08-B09	At3g11510 / 40S ribosomal protein S14 (RPS14B)		At3g11510 ,RAFL06-08-B09 40S ribosomal protein S14 (RPS14B) similar to 40S ribosomal protein S14 GB:P19950 [Zea mays]
		RAFL05-05-K17	At3g03780 / methionine synthase -related		RAFL05-05-K17 ,At3g03780 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative / vitamin-B12-independent methionine synthase, putative / cobalamin-independent methionine synthase, putative very strong similarity to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}; contains Pfam profile PF01717: Methionine synthase, vitamin-B12 independent
		RAFL09-06-A22	At3g62870 / 60S ribosomal protein L7A (RPL7aB)		RAFL09-06-A22 ,At3g62870 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL04-18-D21	At3g57230 / MADS-box protein		At3g57230 ,RAFL04-18-D21 MADS-box protein (AGL16) MADS-box transcription factor DEFH125 - Antirrhinum majus, PIR:T17029; contains Pfam domain PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); contains Pfam domain PF01486: K-box region
		RAFL06-16-N12	At3g46740 / chloroplast import-associated channel protein homolog		At3g46740 ,RAFL06-16-N12 chloroplast outer envelope protein, putative similar to chloroplastic outer envelope membrane protein (OEP75) [Pisum sativum] GI:633607; contains Pfam profile PF01103: outer membrane protein, OMP85 family
		RAFL07-14-F14	At3g14840 / receptor-related serine/threonine kinase		At3g14840 ,RAFL07-14-F14 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; contains 2 predicted transmembrane domains
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL05-08-L19	At3g43540 / expressed protein		At3g43540 ,RAFL05-08-L19 expressed protein hypothetical protein slr1699 - Synechocystis sp. (strain PCC 6803), PIR:S75306
		RAFL06-10-G07	At3g11500 / small nuclear ribonucleo protein polypeptide G -related		At3g11500 ,RAFL06-10-G07 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens]
		RAFL05-20-D01	At3g51510 / expressed protein		RAFL05-20-D01 ,At3g51510 expressed protein
		RAFL09-07-O12	At3g26520 / tonoplast intrinsic protein, putative		At3g26520 ,RAFL09-07-O12 tonoplast intrinsic protein, putative similar to tonoplast intrinsic protein GI:5081419 from [Brassica napus]
		RAFL04-13-N21	At3g02870 / myo-inositol monophosphatase -related		RAFL04-13-N21 ,At3g02870 inositol-1(or 4)-monophosphatase, putative / inositol monophosphatase, putative / IMPase, putative similar to SP|P54928 Inositol-1(or 4)-monophosphatase 3 (EC 3.1.3.25) (IMPase 3) (IMP 3) (Inositol monophosphatase 3) {Lycopersicon esculentum}; contains Pfam profile PF00459: Inositol monophosphatase family
		RAFL05-01-G23	At3g49600 / ubiquitin-specific protease 26 (UBP26)		At3g49600 ,RAFL05-01-G23 ubiquitin-specific protease 26 (UBP26) similar to GI:11993492; RNA binding protein - Homo sapiens, EMBL:AB016089 (N-terminus), several ubiquitin carboxyl-terminal hydrolases from aa pos. 712
		RAFL06-16-M11	At3g18780 / actin 2		At3g18780 ,RAFL06-16-M11 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL06-13-D11	At3g14120 / expressed protein		At3g14120 ,RAFL06-13-D11 expressed protein similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus norvegicus]
		RAFL07-16-B09	At3g48360 / expressed protein		RAFL07-16-B09 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL05-17-P11	At3g04920 / 40S ribosomal protein S24 (RPS24A)		At3g04920 ,RAFL05-17-P11 40S ribosomal protein S24 (RPS24A) similar to ribosomal protein S19 GB:445612 [Solanum tuberosum] and similar to ribosomal protein S24 GB:4506703 [Homo sapiens]
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL09-06-K03	At3g26070 / plastid-lipid associated protein PAP/fibrillin family		At3g26070 ,RAFL09-06-K03 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-19-H05	At3g28900 / 60S ribosomal protein L34 (RPL34C)		RAFL05-19-H05 ,At3g28900 60S ribosomal protein L34 (RPL34C) similar to 60S ribosomal protein L34 GB:P41098 [Nicotiana tabacum]
		RAFL02-01-G08	At3g58610 / ketol-acid reductoisomerase		RAFL02-01-G08 ,At3g58610 ketol-acid reductoisomerase identical to ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Swiss-Prot:Q05758) [Arabidopsis thaliana]
		RAFL06-08-E09	At3g54640 / tryptophan synthase, alpha subunit (TSA1)		RAFL06-08-E09 ,At3g54640 tryptophan synthase, alpha subunit (TSA1) identical to gi:619753
		RAFL05-18-N15	At3g15353 / expressed protein		At3g15353 ,RAFL05-18-N15 metallothionein protein, putative
		RAFL04-14-L08	At3g49010 / 60S ribosomal protein L13 (RPL13B)/breast basic conserved protein 1-related (BBC1)		At3g49010 ,RAFL04-14-L08 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1)
		RAFL11-07-J05	At3g16420 / myrosinase binding protein, putative		RAFL11-07-J05 ,At3g16420 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296; contains Pfam profile: PF01419 jacalin-like lectin domain
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-21-D08	At3g18490 / chloroplast nucleoid DNA-binding protein -related		At3g18490 ,RAFL05-21-D08 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
		RAFL04-10-H14	At3g49910 / 60S ribosomal protein L26 (RPL26A)		At3g49910 ,RAFL04-10-H14 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-17-L17	At3g55280 / 60S ribosomal protein L23A (RPL23aB)		RAFL05-17-L17 ,At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins
		RAFL04-16-M03	At3g20790 / expressed protein		At3g20790 ,RAFL04-16-M03 oxidoreductase family protein weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
		RAFL05-13-D18	At3g04400 / 60S ribosomal protein L23 (RPL23C)		At3g04400 ,RAFL05-13-D18 60S ribosomal protein L23 (RPL23C) similar to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana tabacum]
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
		RAFL08-13-I06	At3g28180 / glycosyltransferase family 2		RAFL08-13-I06 ,At3g28180 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
		RAFL07-12-K04	At3g20050 / T-complex protein 1, alpha subunit/chaperonin		RAFL07-12-K04 ,At3g20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL05-03-L01	At3g56340 / 40S ribosomal protein S26 homolog		At3g56340 ,RAFL05-03-L01 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26
		RAFL06-12-K17	At3g10060 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase, putative		RAFL06-12-K17 ,At3g10060 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans isomerases
		RAFL07-09-D05	At3g60320 / bZIP protein		At3g60320 ,RAFL07-09-D05 expressed protein contains Pfam profiles: PF04782: protein of unknown function (DUF632), PF04783: protein of unknown function (DUF630)
	Cluster:3-2				14	23	903	3723	0.0107122185	0.3535032	33
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL06-11-L24	At3g46650 / UDP-glycosyltransferase family		At3g46650 ,RAFL06-11-L24 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
		RAFL07-08-K09	At3g16000 / myosin heavy chain-related protein		RAFL07-08-K09 ,At3g16000 matrix-localized MAR DNA-binding protein-related similar to matrix-localized MAR DNA binding protein MFP1 GI:1771158 from [Lycopersicon esculentum]
		RAFL07-12-E11	At3g02230 / reversibly glycosylated polypeptide-1		At3g02230 ,RAFL07-12-E11 reversibly glycosylated polypeptide-1 (RGP1) identical to reversibly glycosylated polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
		RAFL03-08-F09	At3g25770 / allene oxide cyclase family		RAFL03-08-F09 ,At3g25770 allene oxide cyclase, putative / early-responsive to dehydration protein, putative / ERD protein, putative strong similarity to early-responsive to dehydration (ERD12) protein [GI:15320414]; similar to allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL05-09-N18	At3g43720 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-09-N18 ,At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
3_4830001_4860000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-11-H16	At3g14440 / 9-cis-epoxycarotenoid dioxygenase (neoxanthin cleavage enzyme)(NC1)(NCED1), putative		At3g14440 ,RAFL08-11-H16 9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin cleavage enzyme, putative / carotenoid cleavage dioxygenase, putative similar to 9-cis-epoxycarotenoid dioxygenase GB:AAF26356 [GI:6715257][Phaseolus vulgaris]
2_7680001_7710000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-19-H17	At2g17840 / senescence-associated protein 12 -related		At2g17840 ,RAFL08-19-H17 senescence/dehydration-associated protein-related (ERD7) similar to senescence-associated protein 12 [Hemerocallis hybrid cultivar] gi|3551958|gb|AAC34857; strong similarity to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB63916; identical to cDNA ERD7 partial cds GI:15320411
1_16380001_16410000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	0	4557	5.119853E-4	5.119853E-4	1
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
5_4560001_4590000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-15-H14	At5g14200 / 3-isopropylmalate dehydrogenase, chloroplast, putative		At5g14200 ,RAFL05-15-H14 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to SP|P29102 3-isopropylmalate dehydrogenase, chloroplast precursor {Brassica napus}
5_6600001_6630000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-17-L09	At5g19590 / expressed protein		At5g19590 ,RAFL04-17-L09 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
5_2580001_2610000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-H11	At5g08100 / asparaginase		At5g08100 ,RAFL04-20-H11 L-asparaginase / L-asparagine amidohydrolase identical to Swiss-Prot:P50287 L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) [Arabidopsis thaliana]
2_7500001_7800000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	9	4545	0.025949622	0.18164736	7
		RAFL05-20-P13	At2g18050 / histone H1		RAFL05-20-P13 ,At2g18050 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305
		RAFL08-16-B13	At2g17390 / glucanase -related		At2g17390 ,RAFL08-16-B13 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
4_15330001_15360000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	3	4617	0.03639058	0.14556232	4
		RAFL04-14-P24	At4g34230 / cinnamyl-alcohol dehydrogenase (CAD), putative		RAFL04-14-P24 ,At4g34230 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl alcohol dehydrogenase, Nicotiana tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL06-12-L22	At4g34190 / stress enhanced protein 1 (SEP1)		RAFL06-12-L22 ,At4g34190 stress enhanced protein 1 (SEP1) identical to stress enhanced protein 1 (SEP1) GI:7384978 from [Arabidopsis thaliana]
5_10410001_10440000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-12-K23	At5g28500 / expressed protein		At5g28500 ,RAFL08-12-K23 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp.
3_23280001_23310000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-11-G23	At3g63060 / expressed protein		At3g63060 ,RAFL08-11-G23 circadian clock coupling factor, putative similar to gb:AAK56924 circadian clock coupling factor ZGT {Nicotiana tabacum}
1_9000001_9300000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	7	4374	0.019107534	0.114645205	6
		RAFL05-20-P12	At1g26470 / expressed protein		At1g26470 ,RAFL05-20-P12 expressed protein
		RAFL04-13-O14	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL04-13-O14 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL03-09-A18	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL03-09-A18 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
3_4500001_4800000					A	B	C	D	P	P'	N
	Cluster:3-0				4	229	15	4415	0.013005282	0.1430581	11
		RAFL06-08-N17	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL06-08-N17 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-J10	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL07-10-J10 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-F16	At3g13930 / acetyltransferase -related		At3g13930 ,RAFL07-10-F16 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL04-20-E04	At3g14100 / oligouridylate binding protein (UBP1), putative		RAFL04-20-E04 ,At3g14100 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies)
	Cluster:4-1				4	306	15	4338	0.03352726	0.36879984	11
		RAFL07-16-E16	At3g13930 / acetyltransferase -related		RAFL07-16-E16 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL04-12-B09	At3g14290 / 20S proteasome alpha subunit E2 (PAE2)		At3g14290 ,RAFL04-12-B09 20S proteasome alpha subunit E2 (PAE2) identical to 20S proteasome subunit PAE2 GB:AAC32061 from [Arabidopsis thaliana]
		RAFL09-12-A19	At3g13930 / acetyltransferase -related		RAFL09-12-A19 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL11-09-K08	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		At3g13920 ,RAFL11-09-K08 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
1_6690001_6720000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-17-D19	At1g19400 / expressed protein		At1g19400 ,RAFL05-17-D19 expressed protein
3_1050001_1080000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL07-08-G02	At3g04080 / apyrase (Atapy1)		At3g04080 ,RAFL07-08-G02 apyrase (APY1) identical to apyrase (Atapy1) GI:6002631 from [Arabidopsis thaliana]
1_960001_990000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-08-M23	At1g03860 / prohibitin 2 -related		RAFL05-08-M23 ,At1g03860 prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain / Band 7 family
5_7530001_7560000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-10-K01	At5g22740 / glycosyltransferase family 2		At5g22740 ,RAFL09-10-K01 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
3_17310001_17340000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL08-18-I10	At3g47000 / glycosyl hydrolase family 3		At3g47000 ,RAFL08-18-I10 glycosyl hydrolase family 3 protein beta-D-glucan exohydrolase, Nicotiana tabacum, TREMBL:AB017502_1
2_9450001_9480000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-19-N01	At2g22430 / homeobox-leucine zipper protein ATHB-6 (HD-Zip transcription factor Athb-6)		At2g22430 ,RAFL05-19-N01 homeobox-leucine zipper protein 6 (HB-6) / HD-ZIP transcription factor 6 identical to homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (SP:P46668) [Arabidopsis thaliana]
4_2550001_2580000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-02-M17	At4g05020 / NADH dehydrogenase - related		At4g05020 ,RAFL05-02-M17 NADH dehydrogenase-related similar to alternative NADH-dehydrogenase [Yarrowia lipolytica] GI:3718005, 64 kDa mitochondrial NADH dehydrogenase [Neurospora crassa] GI:4753821; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase
1_3150001_3180000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	4	4533	0.0101192035	0.050596017	5
		RAFL08-12-B13	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-12-B13 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
		RAFL08-13-D11	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-13-D11 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
5_2430001_2460000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-07-L19	At5g07690 / myb family transcription factor		RAFL05-07-L19 ,At5g07690 myb family transcription factor (MYB29) similar to myb transcription factor GI:3941436 from [Arabidopsis thaliana]
3_6240001_6270000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-F21	At3g18280 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-04-F21 ,At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to TED4 [Zinnia elegans] GI:493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
1_19800001_20100000					A	B	C	D	P	P'	N
	Cluster:0-2				5	74	16	4568	2.0219552E-5	2.6285416E-4	13
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
4_16620001_16650000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-E01	At4g37640 / calcium-transporting ATPase 2, plasma membrane-type (Ca2+-ATPase, isoform 2)		RAFL07-13-E01 ,At4g37640 calcium-transporting ATPase 2, plasma membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical to SP|O81108 Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) {Arabidopsis thaliana}
1_29070001_29100000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL09-16-F04	At1g78240 / dehydration-induced protein-related		At1g78240 ,RAFL09-16-F04 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
4_2580001_2610000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
3_2400001_2700000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	12	4404	0.04162972	0.4162972	10
		RAFL03-04-J10	At3g07560 / glycine-rich protein		At3g07560 ,RAFL03-04-J10 glycine-rich protein
		RAFL05-21-O04	At3g08860 / alanine--glyoxylate aminotransferase (beta-alanine-pyruvate aminotransferase/AGT), putative		RAFL05-21-O04 ,At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative similar to similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus}; contains Pfam profile PF00202: aminotransferase, class III
		RAFL05-09-B20	At3g08590 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL05-09-B20 ,At3g08590 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
5_23970001_24000000					A	B	C	D	P	P'	N
	Cluster:8-0				4	105	0	4554	2.827725E-7	2.827725E-7	1
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
2_18810001_18840000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-B05	At2g45820 / remorin		RAFL06-07-B05 ,At2g45820 DNA-binding protein, putative identical to DNA-binding protein gi|601843|gb|AAA57124 [Arabidopsis thaliana]; contains Pfam domain, PF03766: Remorin, N-terminal region; contains Pfam domain, PF03763: Remorin, C-terminal region
2_17070001_17100000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL07-08-J03	At2g41090 / calmodulin-like calcium binding protein (CaBP-22)		RAFL07-08-J03 ,At2g41090 calmodulin-like calcium-binding protein, 22 kDa (CaBP-22) identical to SP|P30187 22 kDa calmodulin-like calcium-binding protein (CABP-22) [Arabidopsis thaliana]
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL06-09-P21	At2g41110 / calmodulin		At2g41110 ,RAFL06-09-P21 calmodulin-2/3/5 (CAM2) (CAL1) almost identical to Calmodulin-2/3/5 SP:P25069 from [Arabidopsis thaliana]
4_2610001_2640000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-14-D24	At4g05100 / myb DNA-binding protein		At4g05100 ,RAFL05-14-D24 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505
1_1170001_1200000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	2	4428	0.013951966	0.041855898	3
		RAFL07-17-M04	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL07-17-M04 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
		RAFL06-07-J21	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL06-07-J21 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
1_9480001_9510000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-05-A02	At1g27300 / expressed protein		At1g27300 ,RAFL11-05-A02 expressed protein
1_28230001_28260000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	2	4526	0.004804949	0.014414847	3
		RAFL09-17-G19	At1g76180 / dehydrin -related		RAFL09-17-G19 ,At1g76180 dehydrin (ERD14) identical to SP|P42763 Dehydrin ERD14 {Arabidopsis thaliana}
		RAFL05-16-M10	At1g76200 / expressed protein		RAFL05-16-M10 ,At1g76200 expressed protein
	Cluster:3-2				1	36	3	4623	0.031373426	0.09412027	3
		RAFL09-09-K20	At1g76160 / pectinesterase (pectin methylesterase), putative		At1g76160 ,RAFL09-09-K20 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase
3_18360001_18390000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL07-09-D08	At3g49530 / No apical meristem (NAM) protein family		At3g49530 ,RAFL07-09-D08 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 - Arabidopsis thaliana, EMBL:AF201456
1_23100001_23400000					A	B	C	D	P	P'	N
	Cluster:7-1				3	262	6	4392	0.0118007725	0.07080463	6
		RAFL09-14-L13	At1g63420 / expressed protein		RAFL09-14-L13 ,At1g63420 expressed protein
		RAFL05-09-A05	At1g63490 / RB-binding protein -related		At1g63490 ,RAFL05-09-A05 transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus musculus]; similar to Retinoblastoma-binding protein 2 (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam PF02373: jmjC domain
		RAFL04-17-N08	At1g63900 / C3HC4-type zinc finger protein family		At1g63900 ,RAFL04-17-N08 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
	Cluster:1-1				2	103	7	4551	0.016308056	0.09784834	6
		RAFL04-15-B06	At1g63940 / monodehydroascorbate reductase, putative		RAFL04-15-B06 ,At1g63940 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
		RAFL07-07-K13	At1g63940 / monodehydroascorbate reductase, putative		At1g63940 ,RAFL07-07-K13 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
1_5580001_5610000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL05-18-C23	At1g16320 / expressed protein		RAFL05-18-C23 ,At1g16320 expressed protein ESTs gb|T76348, gb|N65615 and gb|Z18119 come from this gene
1_6300001_6600000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	5	4442	0.03844968	0.23069808	6
		RAFL05-12-D12	At1g18490 / expressed protein		RAFL05-12-D12 ,At1g18490 expressed protein
		RAFL07-16-P07	At1g18620 / expressed protein		RAFL07-16-P07 ,At1g18620 expressed protein
4_6210001_6240000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-14-K15	At4g12110 / C-4 methyl sterol oxidase, putative		RAFL05-14-K15 ,At4g12110 sterol desaturase family protein similar to sterol 4-alpha-methyl-oxidase GI:16973471 from [Arabidopsis thaliana]; contains Pfam profile PF01598: Sterol desaturase
5_22080001_22110000					A	B	C	D	P	P'	N
	Cluster:4-0				3	237	0	4423	1.3473156E-4	1.3473156E-4	1
		RAFL06-07-B07	At5g55190 / GTP-binding protein atran3, putative		RAFL06-07-B07 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
		RAFL05-17-L19	At5g55160 / ubiquitin-like protein SMT3, putative		At5g55160 ,RAFL05-17-L19 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP:P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family
		RAFL05-17-C16	At5g55190 / GTP-binding protein atran3, putative		RAFL05-17-C16 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
4_15930001_15960000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL05-21-L13	At4g35880 / expressed protein		RAFL05-21-L13 ,At4g35880 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141
		RAFL06-11-K08	At4g35830 / aconitate hydratase (citrate hydro-lyase/aconitase/ACO) (cytoplasmic)		At4g35830 ,RAFL06-11-K08 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) identical to SP|Q42560 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Arabidopsis thaliana}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain
1_9630001_9660000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL04-15-K19	At1g27730 / salt-tolerance zinc finger protein		At1g27730 ,RAFL04-15-K19 zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) identical to salt-tolerance zinc finger protein GB:CAA64820 GI:1565227 from [Arabidopsis thaliana]; contains Pfam domain, PF00096: Zinc finger, C2H2 type; identical to cDNA zinc finger protein STZ/ZAT10 (STZ/ZAT10) GI:9965730
4_7050001_7080000					A	B	C	D	P	P'	N
	Cluster:1-2				4	170	1	4488	9.10167E-6	1.820334E-5	2
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
3_16200001_16230000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-08-E01	At3g44630 / disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative		At3g44630 ,RAFL05-08-E01 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB
5_25260001_25290000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	1	4380	0.010497557	0.020995114	2
		RAFL04-18-F13	At5g63910 / expressed protein		At5g63910 ,RAFL04-18-F13 expressed protein
		RAFL05-15-F08	At5g63860 / UVB-resistance protein UVR8 (gb|AAD43920.1)		RAFL05-15-F08 ,At5g63860 UVB-resistance protein (UVR8) identical to UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1) [Arabidopsis thaliana]; contains Pfam 00415: Regulator of chromosome condensation (RCC1)
5_24930001_24960000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-14-M06	At5g62890 / permease 1 - like protein		RAFL04-14-M06 ,At5g62890 permease, putative similar to permease 1 [Zea mays] GI:7844006; contains Pfam profile: PF00860 Xanthine/uracil permeases family; identical to cDNA putative permease 1 (MQB2.21) GI:21326024
1_7020001_7050000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL02-04-K03	At1g20340 / plastocyanin		At1g20340 ,RAFL02-04-K03 plastocyanin similar to plastocyanin GI:1865683 from [Arabidopsis thaliana]
3_22590001_22620000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-08-B11	At3g61060 / F-box protein (lectin-related)		RAFL05-08-B11 ,At3g61060 F-box family protein / lectin-related low similarity to PP2 lectin polypeptide [Cucurbita maxima] GI:410437; contains Pfam profile PF00646: F-box domain
1_24690001_24720000					A	B	C	D	P	P'	N
	Cluster:0-0				4	32	5	4622	3.6700155E-7	1.1010047E-6	3
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	Cluster:0-1				4	102	5	4552	2.9127843E-5	8.738353E-5	3
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
4_13320001_13350000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	0	4501	0.0011997843	0.0011997843	1
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
1_10320001_10350000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-10-G18	At1g29500 / auxin-induced (indole-3-acetic acid induced) protein, putative		At1g29500 ,RAFL08-10-G18 auxin-responsive protein, putative similar to auxin-induced protein 6B (SP:P33083) [Glycine max]
5_21750001_21780000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	2	4582	0.0016634972	0.0049904916	3
		RAFL02-10-L11	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		RAFL02-10-L11 ,At5g54270 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL02-06-M22	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		At5g54270 ,RAFL02-06-M22 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
1_1800001_1830000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-17-D16	At1g06000 / glycosyltransferase family		RAFL05-17-D16 ,At1g06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains similarity to UDPG glucosyltransferase GB:AAB62270 GI:2232354 from [Solanum berthaultii]
5_2250001_2280000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-15-E20	At5g07240 / expressed protein		At5g07240 ,RAFL04-15-E20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
4_16110001_16140000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-16-A05	At4g36250 / aldehyde dehydrogenase family protein		RAFL04-16-A05 ,At4g36250 aldehyde dehydrogenase family protein contais aldehyde dehydrogenase (NADP) family protein domain, Pfam:PF00171
1_10200001_10500000					A	B	C	D	P	P'	N
	Cluster:0-2				5	74	21	4563	6.1163635E-5	0.0010397818	17
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
	Cluster:1-2				4	170	22	4467	0.014724249	0.25031224	17
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
5_9660001_9690000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-13-J16	At5g27560 / expressed protein		RAFL04-13-J16 ,At5g27560 expressed protein hypothetical protein slr1702 - Synechocystis sp., PIR:S75312
3_10320001_10350000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
4_13410001_13440000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
3_1620001_1650000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-15-E19	At3g05640 / protein phosphatase 2C (PP2C), putative		At3g05640 ,RAFL05-15-E19 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase-2C GB:AAC36699 from [Mesembryanthemum crystallinum]
5_26580001_26610000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL09-17-H02	At5g67370 / expressed protein		RAFL09-17-H02 ,At5g67370 expressed protein similar to unknown protein (gb|AAC18972.1)
4_8190001_8220000					A	B	C	D	P	P'	N
	Cluster:0-1				3	103	3	4554	2.1731186E-4	8.692474E-4	4
		RAFL09-09-G02	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-09-G02 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-18-F20	At4g16370 / isp4 like protein		At4g16370 ,RAFL04-18-F20 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL09-16-G24	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-16-G24 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
5_24600001_24900000					A	B	C	D	P	P'	N
	Cluster:6-2				4	172	14	4473	0.003961362	0.04357498	11
		RAFL05-05-M22	At5g61990 / pentatricopeptide (PPR) repeat-containing protein		At5g61990 ,RAFL05-05-M22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL07-10-G12	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL07-10-G12 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-10-G12
		RAFL05-13-L11	At5g62630 / expressed protein		RAFL05-13-L11 ,At5g62630 expressed protein
		RAFL04-09-J03	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL04-09-J03 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-09-J03
1_1_300000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	16	4585	0.023211673	0.37138677	16
		RAFL09-06-M22	At1g01620 / plasma membrane intrinsic protein 1c		At1g01620 ,RAFL09-06-M22 plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane protein B (TMPB) identical to plasma membrane intrinsic protein 1c SP:Q08733 from [Arabidopsis thaliana]
		RAFL08-10-E13	At1g01120 / fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1)		At1g01120 ,RAFL08-10-E13 fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1) nearly identical to GB:AAC99312 GI:4091810 from [Arabidopsis thaliana]
	Cluster:9-2				2	65	16	4580	0.026833067	0.42932907	16
		RAFL05-19-I05	At1g01720 / No apical meristem (NAM) protein family		RAFL05-19-I05 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
		RAFL07-07-G15	At1g01720 / No apical meristem (NAM) protein family		RAFL07-07-G15 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
5_22980001_23010000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-13-N12	At5g57490 / porin-related protein		RAFL04-13-N12 ,At5g57490 porin, putative similar to 36kDA porin II [Solanum tuberosum] GI:515360; contains Pfam profile PF01459: Eukaryotic porin
4_6540001_6570000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-21-N06	At4g13010 / oxidoreductase, zinc-binding dehydrogenase family		At4g13010 ,RAFL05-21-N06 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430]; contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family
1_23880001_23910000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL06-09-G09	At1g65270 / expressed protein		RAFL06-09-G09 ,At1g65270 expressed protein
		RAFL05-19-K10	At1g65260 / expressed protein		At1g65260 ,RAFL05-19-K10 PspA/IM30 family protein contains Pfam PF04012: PspA/IM30 family profile; similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30) (Swiss-Prot:Q03943) [Pisum sativum]; similar to phage shock protein A (GI:28806161) [Vibrio parahaemolyticus]; similar to Phage shock protein A. (Swiss-Prot:P23853) [Shigella flexneri]
1_24600001_24900000					A	B	C	D	P	P'	N
	Cluster:0-0				4	32	12	4615	5.1006496E-6	3.5704546E-5	7
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	Cluster:0-1				4	102	12	4545	3.719998E-4	0.0026039986	7
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
2_7500001_7530000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-16-B13	At2g17390 / glucanase -related		At2g17390 ,RAFL08-16-B13 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
5_19890001_19920000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-12-M04	At5g49730 / ferric reductase-like transmembrane component family		At5g49730 ,RAFL04-12-M04 ferric reductase-like transmembrane component family protein similar to ferric-chelate reductase (FRO1) [Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane componenent
1_23730001_23760000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-B04	At1g64880 / ribosomal protein S5 family		At1g64880 ,RAFL04-14-B04 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni]
1_8280001_8310000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-10-O23	At1g23390 / Kelch repeat containing F-box protein family		At1g23390 ,RAFL05-10-O23 kelch repeat-containing F-box family protein similar to hypothetical protein GB:AAF27090 GI:6730669 from (Arabidopsis thaliana); contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
5_750001_780000					A	B	C	D	P	P'	N
	Cluster:7-0				4	243	1	4415	3.685913E-5	7.371826E-5	2
		RAFL05-18-L21	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-18-L21 polyubiquitin (UBQ3) identical to GI:928809
		RAFL06-08-I12	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL06-08-I12 polyubiquitin (UBQ3) identical to GI:928809
		RAFL04-14-D12	At5g03230 / expressed protein		At5g03230 ,RAFL04-14-D12 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584
		RAFL05-21-L02	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-21-L02 polyubiquitin (UBQ3) identical to GI:928809
	Cluster:10-0				1	23	4	4635	0.02548178	0.05096356	2
		RAFL08-13-F10	At5g03210 / expressed protein		RAFL08-13-F10 ,At5g03210 expressed protein
1_11910001_11940000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL06-16-E18	At1g32920 / expressed protein		RAFL06-16-E18 ,At1g32920 expressed protein
2_15810001_15840000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-13-D04	At2g37970 / expressed protein		At2g37970 ,RAFL05-13-D04 SOUL heme-binding family protein weak similarity to SOUL protein [Mus musculus] GI:4886906; contains Pfam profile PF04832: SOUL heme-binding protein
4_180001_210000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
3_19590001_19620000					A	B	C	D	P	P'	N
	Cluster:7-0				4	243	3	4413	2.3698239E-4	7.1094715E-4	3
		RAFL08-10-B03	At3g52850 / spot 3 protein / vacuolar sorting receptor homolog (AtELP1)		RAFL08-10-B03 ,At3g52850 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog (GP:1737218) [Arabidopsis thaliana]
		RAFL09-17-G22	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL09-17-G22 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
		RAFL08-08-G21	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL08-08-G21 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
		RAFL05-03-M02	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL05-03-M02 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
5_450001_480000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-13-K16	At5g02240 / expressed protein		At5g02240 ,RAFL06-13-K16 expressed protein
5_4170001_4200000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-19-F21	At5g13170 / nodulin MtN3 family protein		RAFL05-19-F21 ,At5g13170 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]; identical to cDNA senescence-associated protein (SAG29) mRNA, partial cds GI:4426938
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-04-K23	At5g13180 / No apical meristem (NAM) protein family		RAFL05-04-K23 ,At5g13180 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; hypothetical protein SENU5, senescence up-regulated - Lycopersicon esculentum, EMBL:Z75524
4_6930001_6960000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-09-H22	At4g13770 / cytochrome P450 family		At4g13770 ,RAFL04-09-H22 cytochrome P450 family protein
1_26790001_26820000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-11-I21	At1g72160 / cytosolic factor -related		RAFL09-11-I21 ,At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to GI:807956 from [Saccharomyces cerevisiae]similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus
		RAFL05-07-A22	At1g72150 / cytosolic factor -related		At1g72150 ,RAFL05-07-A22 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus}; similar to GI:807956 from [Saccharomyces cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus
2_930001_960000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-07-F15	At2g03120 / expressed protein		At2g03120 ,RAFL06-07-F15 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435)
5_9000001_9300000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	7	4423	0.011378965	0.06827379	6
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
	Cluster:4-1				3	307	7	4346	0.02459708	0.14758249	6
		RAFL05-17-I01	At5g26210 / nucleic acid binding protein - like		RAFL05-17-I01 ,At5g26210 PHD finger family protein contains Pfam domain, PF00628: PHD-finger
		RAFL05-14-F02	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL05-14-F02 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
		RAFL09-17-A07	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-17-A07 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
4_13710001_13740000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	1	4512	0.003019041	0.006038082	2
		RAFL04-10-J05	At4g30170 / peroxidase, putative		RAFL04-10-J05 ,At4g30170 peroxidase, putative identical to peroxidase ATP8a [Arabidopsis thaliana] gi|1546706|emb|CAA67361
		RAFL07-09-N06	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,RAFL07-09-N06 ATPase 2, plasma membrane-type, putative / proton pump 2, putative / proton-exporting ATPase, putative strong similarity to SP|P19456 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
3_390001_420000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	3	4623	0.031373426	0.1254937	4
		RAFL07-12-E11	At3g02230 / reversibly glycosylated polypeptide-1		At3g02230 ,RAFL07-12-E11 reversibly glycosylated polypeptide-1 (RGP1) identical to reversibly glycosylated polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
5_18900001_19200000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	15	4552	0.04667572	0.6534601	14
		RAFL09-09-E01	At5g47560 / sodium/dicarboxylate cotransporter, putative		RAFL09-09-E01 ,At5g47560 sodium/dicarboxylate cotransporter, putative similar to SWISS-PROT:Q13183 renal sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
		RAFL11-13-F11	At5g47550 / expressed protein		RAFL11-13-F11 ,At5g47550 cysteine protease inhibitor, putative / cystatin, putative similar to SP|P09229 Cysteine proteinase inhibitor-I (Oryzacystatin-I) {Oryza sativa}; contains Pfam profile PF00031: Cystatin domain
2_7380001_7410000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-21-C22	At2g17120 / delta-8 sphingolipid desaturase		At2g17120 ,RAFL05-21-C22 peptidoglycan-binding LysM domain-containing protein contains Pfam profile PF01476: LysM domain; supporting cDNA gi|16226688|gb|AF428464.1|AF428464
5_19080001_19110000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL04-20-F22	At5g47840 / expressed protein		At5g47840 ,RAFL04-20-F22 adenylate kinase, chloroplast, putative / ATP-AMP transphosphorylase, putative similar to SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase) {Zea mays}; contains Pfam profile PF00406: Adenylate kinase
5_20400001_20430000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-12-P13	At5g50850 / pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (PDHE1-B) (sp Q38799)		At5g50850 ,RAFL06-12-P13 pyruvate dehydrogenase E1 component beta subunit, mitochondrial / PDHE1-B (PDH2) identical to SP|Q38799 Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) {Arabidopsis thaliana}
2_13470001_13500000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-09-C24	At2g31810 / acetolactate synthase, small subunit (ALS), putative		At2g31810 ,RAFL09-09-C24 acetolactate synthase small subunit, putative similar to gi:5931761 from Nicotiana plumbaginifolia
1_1740001_1770000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-D04	At1g05850 / glycosyl hydrolase family 19 (chitinase)		At1g05850 ,RAFL04-15-D04 chitinase-like protein 1 (CTL1) similar to class I chitinase GI:7798656 from [Halimolobos perplexa var. perplexa]; contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328
3_20310001_20340000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL07-09-N03	At3g54820 / plasma membrane aquaporin, putative		RAFL07-09-N03 ,At3g54820 aquaporin, putative similar to plasma membrane aquaporin GI:3551133 from [Raphanus sativus]
1_5100001_5400000					A	B	C	D	P	P'	N
	Cluster:6-1				4	311	13	4335	0.024095291	0.2650482	11
		RAFL09-09-G03	At1g15060 / expressed protein		At1g15060 ,RAFL09-09-G03 expressed protein
		RAFL04-12-M22	At1g15270 / expressed protein		At1g15270 ,RAFL04-12-M22 expressed protein ESTs gb|AA650895, gb|AA720043 and gb|R29777 come from this gene
		RAFL03-01-D10	At1g15670 / Kelch repeat containing F-box protein family		RAFL03-01-D10 ,At1g15670 kelch repeat-containing F-box family protein similar to SP|Q9ER30 Kelch-related protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
		RAFL06-16-H04	At1g14890 / pectinesterase family		RAFL06-16-H04 ,At1g14890 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase GB:X85216 GI:732912 SP|Q43111 [Phaseolus vulgaris], SP|Q42534 from Arabidopsis thaliana; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor
3_19470001_19500000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL09-18-L02	At3g52500 / expressed protein		At3g52500 ,RAFL09-18-L02 aspartyl protease family protein contains Pfam PF00026: eukaryotic aspartyl protease
3_21930001_21960000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-14-A21	At3g59350 / serine/threonine protein kinase, putative		RAFL05-14-A21 ,At3g59350 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
4_16680001_16710000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-15-C22	At4g37760 / squalene monooxygenase (squalene epoxidase) (SE), putative		RAFL08-15-C22 ,At4g37760 squalene monooxygenase, putative / squalene epoxidase, putative similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
3_300001_600000					A	B	C	D	P	P'	N
	Cluster:6-0				3	137	21	4502	0.033808403	0.54093444	16
		RAFL07-09-O22	At3g02090 / mitochondrial processing peptidase -related		RAFL07-09-O22 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL08-17-M09	At3g02200 / expressed protein		At3g02200 ,RAFL08-17-M09 proteasome family protein contains Pfam domain, PF01399: PCI domain
		RAFL09-16-C01	At3g02720 / protease-related		At3g02720 ,RAFL09-16-C01 DJ-1 family protein / protease-related similar to Intracellular Protease [Pyrococcus horikoshii] GI:11513902; contains Pfam profile: PF01965 ThiJ/PfpI family
2_8700001_9000000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	14	4587	0.018517405	0.20369145	11
		RAFL04-17-A14	At2g21050 / amino acid permease, putative		At2g21050 ,RAFL04-17-A14 amino acid permease, putative similar to AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam profile PF01490: Transmembrane amino acid transporter protein
		RAFL07-15-P11	At2g21070 / hypothetical protein		RAFL07-15-P11 ,At2g21070 expressed protein
3_22410001_22440000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-07-O06	At3g60620 / phosphatidate cytidylyltransferase domain-containing protein		At3g60620 ,RAFL05-07-O06 phosphatidate cytidylyltransferase family protein contains Pfam profile: PF01148 phosphatidate cytidylyltransferase
1_25830001_25860000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-02-H04	At1g69680 / expressed protein		At1g69680 ,RAFL05-02-H04 expressed protein similar to MOG1 isoform A (GI:9864064) [Homo sapiens]
1_2010001_2040000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	4	4563	0.005961956	0.023847824	4
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
	Cluster:3-1				2	214	4	4443	0.028317545	0.11327018	4
		RAFL05-21-D14	At1g06640 / 2-oxoglutarate-dependent dioxygenase, putative		At1g06640 ,RAFL05-21-D14 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family
		RAFL09-15-M06	At1g06640 / 2-oxoglutarate-dependent dioxygenase, putative		At1g06640 ,RAFL09-15-M06 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family
	Cluster:9-0				1	31	5	4626	0.04049657	0.16198628	4
		RAFL05-14-F20	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL05-14-F20 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
2_10200001_10500000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	5	4482	0.026250903	0.10500361	4
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
		RAFL02-07-O01	At2g24270 / NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative		RAFL02-07-O01 ,At2g24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase [NADP+]) [Nicotiana plumbaginifolia] SWISS-PROT:P93338
	Cluster:7-0				2	245	5	4411	0.049187053	0.19674821	4
		RAFL09-07-I23	At2g24420 / expressed protein		RAFL09-07-I23 ,At2g24420 DNA repair ATPase-related contains 2 transmembrane domains; similar to DNA double-strand break repair rad50 ATPase. (Swiss-Prot:O33600) [Sulfolobus acidocaldarius]
		RAFL09-18-K24	At2g24180 / cytochrome P450 family		At2g24180 ,RAFL09-18-K24 cytochrome P450 family protein
5_19500001_19800000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	4	4426	0.0037112702	0.01855635	5
		RAFL06-16-O18	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL06-16-O18 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
		RAFL05-07-D18	At5g49510 / von Hippel-Lindau binding protein (VHL binding protein; VBP) like		At5g49510 ,RAFL05-07-D18 VHL binding protein, putative / prefoldin, putative similar to Swiss-Prot:Q15765 prefoldin subunit 3 (Von Hippel-Lindau binding protein 1; VHL binding protein-1; VBP-1; HIBBJ46) [Mus musculus]
		RAFL04-13-N15	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL04-13-N15 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
1_6900001_7200000					A	B	C	D	P	P'	N
	Cluster:10-1				3	40	14	4606	4.5403827E-4	0.0059024976	13
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
4_14580001_14610000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-19-E02	At4g32410 / cellulose synthase, catalytic subunit, putative		RAFL04-19-E02 ,At4g32410 cellulose synthase, catalytic subunit, putative similar to cellulose synthase-1 [gi:9622874] and -2 [gi:9622876] from Zea mays
1_10470001_10500000					A	B	C	D	P	P'	N
	Cluster:0-2				5	74	6	4578	5.2435286E-7	2.6217642E-6	5
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
	Cluster:1-2				3	171	8	4481	0.006753532	0.03376766	5
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
1_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:10-1				4	39	111	4509	0.020676302	0.57893646	28
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	Cluster:4-1				14	296	101	4252	0.022402924	0.6272819	28
		RAFL05-03-P24	At1g19140 / expressed protein		RAFL05-03-P24 ,At1g19140 expressed protein
		RAFL03-02-D01	At1g25550 / expressed protein		At1g25550 ,RAFL03-02-D01 myb family transcription factor contains Pfam domain, PF00249: Myb-like DNA-binding domain
		RAFL07-12-O20	At1g25490 / serine/threonine protein phosphatase 2A, 65 KDa regulatory subunit A		At1g25490 ,RAFL07-12-O20 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit A (RCN1) identical to phosphoprotein phosphatase 2A, regulatory subunit A GI:1262171 from [Arabidopsis thaliana]
		RAFL11-03-C17	At1g22940 / phosphomethylpyrimidine kinase		At1g22940 ,RAFL11-03-C17 thiamin biosynthesis protein, putative strong similarity to hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase (BTH1) GI:7488455 from [Brassica napus]
		RAFL07-17-K18	At1g20880 / RNA recognition motif (RRM) - containing protein		At1g20880 ,RAFL07-17-K18 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386
		RAFL11-02-O13	At1g18660 / RING finger protein family		RAFL11-02-O13 ,At1g18660 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type
		RAFL04-09-G11	At1g23130 / Bet v I allergen family		RAFL04-09-G11 ,At1g23130 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)]; location of ESTs gb|T45139 and gb|T43456 ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL07-09-N02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL07-09-N02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL07-15-D17	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL07-15-D17 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
		RAFL08-18-G05	At1g25350 / glutamine-tRNA ligase (glutaminyl-tRNA synthetase) (GlnRS), putative		RAFL08-18-G05 ,At1g25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative similar to tRNA-glutamine synthetase GI:2995454 from [Lupinus luteus]
		RAFL05-10-C05	At1g18150 / mitogen-activated protein kinase (MAPK), putative (MPK8)		RAFL05-10-C05 ,At1g18150 mitogen-activated protein kinase, putative / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis thaliana] gi|7106542|dbj|BAA92222; mitogen-activated protein kinase (MAPK), PMID:12119167; similar to mitogen-activated protein kinase GI:5815410 from (Oryza sativa)
		RAFL05-21-D23	At1g21720 / 20S proteasome beta subunit C (PBC1)		At1g21720 ,RAFL05-21-D23 20S proteasome beta subunit C1 (PBC1) (PRCT) almost identical to GB:AAC32069 from [Arabidopsis thaliana], EST gb|T76747 comes from this gene; identical to cDNA proteasome subunit prct GI:2511567
		RAFL11-04-J02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL11-04-J02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL05-18-A10	At1g22850 / expressed protein		RAFL05-18-A10 ,At1g22850 expressed protein
3_17190001_17220000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL06-11-L24	At3g46650 / UDP-glycosyltransferase family		At3g46650 ,RAFL06-11-L24 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL08-10-K08	At3g46660 / glucosyltransferase-related protein		At3g46660 ,RAFL08-10-K08 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
1_15600001_15900000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	6	4551	0.013107923	0.09175546	7
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	Cluster:10-0				1	23	7	4632	0.0404709	0.2832963	7
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
1_10380001_10410000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
3_4380001_4410000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	3	4420	0.023792636	0.09517054	4
		RAFL05-04-L08	At3g13460 / expressed protein		At3g13460 ,RAFL05-04-L08 expressed protein contains Pfam profile PF04146: YT521-B-like family
		RAFL11-02-P19	At3g13460 / expressed protein		At3g13460 ,RAFL11-02-P19 expressed protein contains Pfam profile PF04146: YT521-B-like family
2_12000001_12300000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	3	4444	0.019467412	0.077869646	4
		RAFL04-12-K04	At2g28380 / expressed protein		RAFL04-12-K04 ,At2g28380 double-stranded RNA-binding domain (DsRBD)-containing protein contains Pfam profile PF00035: Double-stranded RNA binding motif
		RAFL08-11-H19	At2g28550 / AP2 domain transcription factor RAP2.7		RAFL08-11-H19 ,At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI:2281639) [Arabidopsis thaliana]
1_1680001_1710000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
2_17100001_17130000					A	B	C	D	P	P'	N
	Cluster:10-0				2	22	0	4639	2.5392263E-5	2.5392263E-5	1
		RAFL05-09-P10	At2g41190 / amino acid transporter family		RAFL05-09-P10 ,At2g41190 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
		RAFL05-20-J01	At2g41190 / amino acid transporter family		At2g41190 ,RAFL05-20-J01 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
1_4800001_5100000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	9	4339	0.042557452	0.38301706	9
		RAFL11-07-B22	At1g14650 / splicing factor -related		At1g14650 ,RAFL11-07-B22 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein similar to SP|Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module
		RAFL11-06-C12	At1g14570 / expressed protein		At1g14570 ,RAFL11-06-C12 UBX domain-containing protein contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif
		RAFL05-03-P12	At1g14720 / xyloglucan endotransglycosylase (XTR2)		RAFL05-03-P12 ,At1g14720 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR2) identical to endoxyloglucan transferase [Arabidopsis thaliana] GI:5533311
4_15900001_15930000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL02-09-H01	At4g35770 / senescence-associated protein sen1		At4g35770 ,RAFL02-09-H01 senescence-associated protein (SEN1) identical to senescence-associated protein GI:1046270 from [Arabidopsis thaliana]
2_17640001_17670000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-03-A05	At2g42540 / cold-regulated protein (cor15a)		At2g42540 ,RAFL05-03-A05 cold-responsive protein / cold-regulated protein (cor15a) identical to cold-regulated protein cor15a [Arabidopsis thaliana] GI:507149; contains Pfam profile PF02987: Late embryogenesis abundant protein
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-20-N18	At2g42530 / cold-regulated protein (cor15b)		At2g42530 ,RAFL05-20-N18 cold-responsive protein / cold-regulated protein (cor15b) nearly identical to cold-regulated gene cor15b [Arabidopsis thaliana] GI:456016; contains Pfam profile PF02987: Late embryogenesis abundant protein
4_16260001_16290000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL11-02-D14	At4g36730 / G-box-binding factor 1		At4g36730 ,RAFL11-02-D14 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor
2_9120001_9150000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-07-J20	At2g21440 / RNA recognition motif (RRM) - containing protein		RAFL07-07-J20 ,At2g21440 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
1_18720001_18750000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-08-G22	At1g51610 / cation efflux family protein/metal tolerance protein, putative (MTPc4)		RAFL05-08-G22 ,At1g51610 cation efflux family protein / metal tolerance protein, putative (MTPc4) member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563
1_15480001_15510000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O07	At1g42550 / expressed protein		At1g42550 ,RAFL06-08-O07 expressed protein
5_19380001_19410000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-G13	At5g48580 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase, putative		RAFL05-09-G13 ,At5g48580 FK506-binding protein 2-2 (FKBP15-2) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38936| FK506-binding protein 2-2 precursor (EC 5.2.1.8);
3_19800001_20100000					A	B	C	D	P	P'	N
	Cluster:2-1				6	238	22	4397	0.002746123	0.041191842	15
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
4_17400001_17700000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	9	4601	0.0065294323	0.052235458	8
		RAFL09-15-K07	At4g39800 / myo-inositol-1-phosphate synthase		At4g39800 ,RAFL09-15-K07 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
		RAFL09-14-L01	At4g39800 / myo-inositol-1-phosphate synthase		RAFL09-14-L01 ,At4g39800 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
	Cluster:4-2				2	133	9	4519	0.03856442	0.30851537	8
		RAFL05-03-P16	At4g40030 / histone H3.2		RAFL05-03-P16 ,At4g40030 histone H3.2 identical to Histone H3.2, minor Lolium temulentum SP|P11105, nearly identical to histone H3.2 Mus pahari GI:515005; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-08-N24	At4g39950 / cytochrome P450 79B2		RAFL05-08-N24 ,At4g39950 cytochrome P450 79B2, putative (CYP79B2) identical to cytochrome P450 (79B2) SP:O81346 from [Arabidopsis thaliana]
4_14100001_14400000					A	B	C	D	P	P'	N
	Cluster:7-1				3	262	12	4386	0.049681213	0.59617454	12
		RAFL09-17-A12	At4g31340 / expressed protein		At4g31340 ,RAFL09-17-A12 myosin heavy chain-related contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo sapiens]
		RAFL05-17-E04	At4g31410 / expressed protein		At4g31410 ,RAFL05-17-E04 expressed protein
		RAFL05-12-L10	At4g31780 / 1,2-diacylglycerol 3-beta-galactosyltransferase (UDP-galactose:diacylglycerol galactosyltransferase) (MGDG synthase) (MGD1), putative		At4g31780 ,RAFL05-12-L10 1,2-diacylglycerol 3-beta-galactosyltransferase, putative / monogalactosyldiacylglycerol synthase, putative / MGDG synthase, putative similar to MGD synthase type A from Arabidopsis thaliana [gi:9927297], similar to monogalactosyldiacylglycerol synthase, Cucumis sativus, PID:g1805254
5_22260001_22290000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-F24	At5g55710 / expressed protein		RAFL05-13-F24 ,At5g55710 expressed protein
1_21570001_21600000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-16-M15	At1g59710 / expressed protein		At1g59710 ,RAFL07-16-M15 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569
2_13800001_14100000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	12	4418	0.03588357	0.3588357	10
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL09-06-J09	At2g32860 / glycosyl hydrolase family 1		RAFL09-06-J09 ,At2g32860 glycosyl hydrolase family 1 protein
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
1_5400001_5430000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL05-11-G07	At1g15740 / leucine rich repeat protein-related		RAFL05-11-G07 ,At1g15740 leucine-rich repeat family protein
		RAFL09-17-I16	At1g15740 / leucine rich repeat protein-related		RAFL09-17-I16 ,At1g15740 leucine-rich repeat family protein
3_8640001_8670000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL09-13-P15	At3g23920 / glycosyl hydrolase family 14 (beta-amylase)		RAFL09-13-P15 ,At3g23920 beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative similar to beta-amylase enzyme [Arabidopsis thaliana] GI:6065749, beta-amylase PCT-BMYI from [Solanum tuberosum]; contains Pfam profile PF01373: Glycosyl hydrolase family 14
4_14760001_14790000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-11-M03	At4g32770 / sucrose export defective 1 precursor (SXD1)		RAFL07-11-M03 ,At4g32770 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) identical to SP|Q94FY7 Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) {Arabidopsis thaliana}
5_5670001_5700000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL09-12-G22	At5g17310 / UDP-glucose pyrophosphorylase		At5g17310 ,RAFL09-12-G22 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum}; contains Pfam profile PF01704: UTP--glucose-1-phosphate uridylyltransferase
		RAFL09-15-M21	At5g17310 / UDP-glucose pyrophosphorylase		At5g17310 ,RAFL09-15-M21 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum}; contains Pfam profile PF01704: UTP--glucose-1-phosphate uridylyltransferase
2_11370001_11400000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-10-M04	At2g26800 / hydroxymethylglutaryl-CoA lyase -related		At2g26800 ,RAFL06-10-M04 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to SP|P35915 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA lyase) {Gallus gallus}; contains Pfam profile PF00682: HMGL-like
4_12000001_12300000					A	B	C	D	P	P'	N
	Cluster:9-2				3	64	17	4579	0.0027139732	0.03528165	13
		RAFL09-14-O03	At4g26080 / protein phosphatase ABI1		At4g26080 ,RAFL09-14-O03 protein phosphatase 2C ABI1 / PP2C ABI1 / abscisic acid-insensitive 1 (ABI1) nearly identical to SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 1) {Arabidopsis thaliana}
		RAFL05-03-K03	At4g25670 / expressed protein		RAFL05-03-K03 ,At4g25670 expressed protein
		RAFL09-11-P17	At4g25690 / expressed protein		At4g25690 ,RAFL09-11-P17 expressed protein
3_19290001_19320000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-15-E16	At3g52060 / expressed protein		At3g52060 ,RAFL09-15-E16 expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266
1_900001_930000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL02-09-O22	At1g03610 / expressed protein		RAFL02-09-O22 ,At1g03610 expressed protein
1_29460001_29490000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-09-N17	At1g79270 / expressed protein		RAFL05-09-N17 ,At1g79270 expressed protein contains Pfam profile PF04146: YT521-B-like family
4_12390001_12420000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-13-H13	At4g26670 / expressed protein		RAFL06-13-H13 ,At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|Q9Z0V8 Mitochondrial import inner membrane translocase subunit TIM17 A {Mus musculus}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17
1_12720001_12750000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-19-E24	At1g34780 / expressed protein		RAFL08-19-E24 ,At1g34780 protein disulfide isomerase-related contains weak similarity to Pfam:P08003 protein disulfide isomerase A4 precursor (Protein ERp-72, ERp72) [Mus musculus]
5_5160001_5190000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-19-G24	At5g15850 / Zinc finger protein CONSTANS-LIKE 1 (COL1)		RAFL05-19-G24 ,At5g15850 zinc finger protein CONSTANS-LIKE 1 (COL1) identical to Zinc finger protein CONSTANS-LIKE 1 SP:O50055 from [Arabidopsis thaliana]
5_25860001_25890000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-19-G11	At5g65430 / 14-3-3 protein GF14 kappa (grf8)		RAFL05-19-G11 ,At5g65430 14-3-3 protein GF14 kappa (GRF8) identical to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from [Arabidopsis thaliana]
2_450001_480000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL09-06-M16	At2g01980 / sodium proton exchanger, putative (NHX7/SOS1)		At2g01980 ,RAFL09-06-M16 sodium proton exchanger, putative (NHX7) (SOS1) identical to putative Na+/H+ antiporter SOS1 [Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
2_2070001_2100000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-01-K24	At2g05620 / expressed protein		RAFL05-01-K24 ,At2g05620 expressed protein
1_18900001_18930000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
1_18000001_18300000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	10	4513	0.048507567	0.48507568	10
		RAFL05-13-P07	At1g50480 / formate-tetrahydrofolate ligase (10-formyltetrahydrofolate synthetase)		At1g50480 ,RAFL05-13-P07 formate--tetrahydrofolate ligase / 10-formyltetrahydrofolate synthetase (THFS) identical to 10-formyltetrahydrofolate synthetase (Arabidopsis thaliana) GI:5921663
		RAFL03-06-G11	At1g49970 / ATP-dependent Clp protease proteolytic subunit (ClpR1)		At1g49970 ,RAFL03-06-G11 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069 GI:5360595 from [Arabidopsis thaliana]; identical to cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
3_6180001_6210000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-16-L04	At3g18050 / expressed protein		At3g18050 ,RAFL04-16-L04 expressed protein
		RAFL09-15-K15	At3g18080 / glycosyl hydrolase family 1		At3g18080 ,RAFL09-15-K15 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase BGQ60 precursor GB:A57512 [Hordeum vulgare]; similar to beta-mannosidase enzyme (GI:17226270) [Lycopersicon esculentum]
1_19320001_19350000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
5_8400001_8700000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	9	4577	1.9202305E-6	1.7282075E-5	9
		RAFL08-11-G08	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-11-G08 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-15-M16	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-15-M16 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL06-11-F24	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL06-11-F24 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-I23	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-I23 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-N14	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-N14 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
2_11130001_11160000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-05-I17	At2g26300 / G protein alpha subunit 1 (GPA1)		RAFL05-05-I17 ,At2g26300 guanine nucleotide binding protein (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1) identical to SP|P18064 Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) {Arabidopsis thaliana}
1_17100001_17400000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	3	4551	0.005170766	0.020683063	4
		RAFL06-15-O23	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL06-15-O23 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
		RAFL07-07-N10	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL07-07-N10 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
2_9300001_9600000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	11	4590	0.012347987	0.14817585	12
		RAFL05-19-N01	At2g22430 / homeobox-leucine zipper protein ATHB-6 (HD-Zip transcription factor Athb-6)		At2g22430 ,RAFL05-19-N01 homeobox-leucine zipper protein 6 (HB-6) / HD-ZIP transcription factor 6 identical to homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (SP:P46668) [Arabidopsis thaliana]
		RAFL06-08-M09	At2g22080 / En/Spm-related transposon protein		RAFL06-08-M09 ,At2g22080 expressed protein
5_22020001_22050000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-04-E02	At5g54940 / translation initiation factor-related protein		At5g54940 ,RAFL05-04-E02 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1
4_10110001_10140000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
3_7080001_7110000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	1	4446	0.0062126224	0.012425245	2
		RAFL05-14-P22	At3g20320 / expressed protein		At3g20320 ,RAFL05-14-P22 mce-related family protein contains Pfam PF02470: mce related protein
		RAFL07-16-F16	At3g20330 / aspartate carbamoyltransferase precursor (aspartate transcarbamylase)		RAFL07-16-F16 ,At3g20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana}
	Cluster:3-2				1	36	2	4624	0.02362106	0.04724212	2
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
4_2220001_2250000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-14-J06	At4g04460 / aspartic protease -related		RAFL09-14-J06 ,At4g04460 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
3_11370001_11400000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-05-A17	At3g29575 / expressed protein		At3g29575 ,RAFL05-05-A17 expressed protein
4_10860001_10890000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-12-B16	At4g22670 / tetratricopeptide repeat (TPR)-containing protein		RAFL05-12-B16 ,At4g22670 tetratricopeptide repeat (TPR)-containing protein similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain
2_3000001_3300000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-B20	At2g07350 / unknown similar to AGI		RAFL05-15-B20 ,At2g07350 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL05-15-B20
3_10500001_10800000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	6	4342	0.018891884	0.13224319	7
		RAFL05-10-J16	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-10-J16 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL11-03-E07	At3g28715 / expressed protein		At3g28715 ,RAFL11-03-E07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL09-18-I07	At3g28715 / expressed protein		At3g28715 ,RAFL09-18-I07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
3_15600001_15900000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	4	4344	0.008711721	0.043558605	5
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
1_20790001_20820000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-08-L20	At1g56600 / galactinol synthase, putative		At1g56600 ,RAFL08-08-L20 galactinol synthase, putative similar to galactinol synthase, isoform GolS-1 GI:5608497 from [Ajuga reptans]
3_21120001_21150000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-19-N16	At3g57070 / expressed protein		RAFL04-19-N16 ,At3g57070 glutaredoxin family protein contains Pfam profile PF00462: Glutaredoxin
3_20010001_20040000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-13-J02	At3g54050 / fructose-bisphosphatase precursor		At3g54050 ,RAFL04-13-J02 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative strong similarity to fructose-1,6-bisphosphatase [Brassica napus] GI:289367; identical to SP|P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
2_18960001_18990000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-12-P09	At2g46330 / arabinogalactan-protein (AGP16)		At2g46330 ,RAFL06-12-P09 arabinogalactan-protein (AGP16) identical to gi|10880509|gb|AAG24284
2_13500001_13530000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-10-A09	At2g31880 / leucine-rich repeat transmembrane protein kinase, putative		RAFL09-10-A09 ,At2g31880 leucine-rich repeat transmembrane protein kinase, putative
3_9900001_10200000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	9	4344	0.040857635	0.32686108	8
		RAFL05-08-N12	At3g27080 / TOM20 -related		RAFL05-08-N12 ,At3g27080 mitochondrial import receptor subunit TOM20-3 / translocase of outer membrane 20 kDa subunit 3 (TOM20-3) identical to mitochondrial import receptor subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
		RAFL06-07-A02	At3g27240 / cytochrome c -related		RAFL06-07-A02 ,At3g27240 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
		RAFL09-09-A19	At3g27090 / gda-1 -related		RAFL09-09-A19 ,At3g27090 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
	Cluster:6-0				2	138	10	4513	0.048507567	0.38806054	8
		RAFL04-20-J16	At3g27300 / glucose-6-phosphate 1-dehydrogenase -related		RAFL04-20-J16 ,At3g27300 glucose-6-phosphate 1-dehydrogenase / G6PD (ACG9) identical to glucose-6-phosphate 1-dehydrogenase (acg9) [Arabidopsis thaliana] GI:5732195
		RAFL07-08-A14	At3g26890 / expressed protein		RAFL07-08-A14 ,At3g26890 expressed protein
3_21000001_24000000					A	B	C	D	P	P'	N
	Cluster:9-0				3	29	112	4519	0.043145064	1.337497	31
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
		RAFL09-12-B03	At3g60140 / glycosyl hydrolase family 1, beta-glucosidase		At3g60140 ,RAFL09-12-B03 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547
2_18570001_18600000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL11-02-D19	At2g45180 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g45180 ,RAFL11-02-D19 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
5_8460001_8490000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	0	4586	1.0777667E-9	1.0777667E-9	1
		RAFL08-11-G08	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-11-G08 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-15-M16	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-15-M16 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL06-11-F24	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL06-11-F24 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-I23	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-I23 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-N14	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-N14 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
1_29310001_29340000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	2	4346	0.00275674	0.00827022	3
		RAFL09-07-B18	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-07-B18 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
		RAFL09-10-E02	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-10-E02 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
		RAFL09-07-E05	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-07-E05 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
2_19350001_19380000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-K13	At2g47320 / peptidyl-prolyl cis-trans isomerase -related		At2g47320 ,RAFL05-16-K13 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1_5430001_5460000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-10-O24	At1g15820 / chlorophyll a/b-binding protein Lhcb6		At1g15820 ,RAFL06-10-O24 chlorophyll A-B binding protein, chloroplast (LHCB6) nearly identical to Lhcb6 protein [Arabidopsis thaliana] GI:4741960; contains Pfam profile PF00504: Chlorophyll A-B binding protein
5_20100001_20400000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	4	4616	0.045284163	0.22642082	5
		RAFL05-09-K04	At5g50360 / expressed protein		At5g50360 ,RAFL05-09-K04 expressed protein
1_5880001_5910000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-11-E10	At1g17220 / translation initiation factor IF-2, chloroplast precursor		RAFL09-11-E10 ,At1g17220 translation initiation factor IF-2, chloroplast, putative similar to SP|P57997|IF2C_PHAVU Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) {Phaseolus vulgaris}
5_19260001_19290000					A	B	C	D	P	P'	N
	Cluster:3-1				3	213	1	4446	3.7887847E-4	7.5775693E-4	2
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
3_6990001_7020000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL08-08-I01	At3g20100 / cytochrome P450 family		At3g20100 ,RAFL08-08-I01 cytochrome P450 family protein similar to Cytochrome P450 93A3 (P450 CP5) (SP:O81973) [Glycine max]; contains Pfam profile: PF00067 cytochrome P450; supported by full-length cDNA: Ceres:149380.
3_2100001_2130000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	2	4396	0.017887078	0.053661235	3
		RAFL09-11-P05	At3g06720 / importin alpha subunit		RAFL09-11-P05 ,At3g06720 importin alpha-1 subunit, putative (IMPA1) similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT:Q96321
		RAFL04-20-H12	At3g06670 / expressed protein		At3g06670 ,RAFL04-20-H12 expressed protein
5_6990001_7020000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-B17	At5g20720 / chloroplast Cpn21 protein		At5g20720 ,RAFL04-15-B17 20 kDa chaperonin, chloroplast (CPN21) (CHCPN10) (CPN20) identical to chloroplast 20 kDa chaperonin, chloroplast precursor (Protein Cpn21), chloroplast protein Cpn10, chloroplast chaperonin 10 (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana]; identical to cDNA chaperonin 20 GI:14587372
1_7500001_7800000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	4	4616	0.045284163	0.22642082	5
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
1_18030001_18060000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-L16	At1g49890 / expressed protein		RAFL04-14-L16 ,At1g49890 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566)
5_9150001_9180000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-C18	At5g26260 / expressed protein		At5g26260 ,RAFL09-17-C18 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
3_11100001_11400000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	3	4427	0.0022016333	0.008806533	4
		RAFL04-20-L13	At3g29240 / chloroplast lumen common protein family		RAFL04-20-L13 ,At3g29240 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
		RAFL02-03-B07	At3g29160 / Snf1-related protein kinase KIN11 (AKIN11)		RAFL02-03-B07 ,At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI:1729444 from [Arabidopsis thaliana]
		RAFL08-09-A13	At3g29320 / glucan phosphorylase, putative		RAFL08-09-A13 ,At3g29320 glucan phosphorylase, putative similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4), 691-695 (1989))
1_27090001_27120000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-12-A07	At1g72930 / disease resistance protein (TIR class), putative		RAFL06-12-A07 ,At1g72930 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein.
4_13800001_13830000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-17-H01	At4g30350 / expressed protein		RAFL04-17-H01 ,At4g30350 heat shock protein-related contains similarity to heat shock protein 101 [Triticum aestivum] gi|6013196|gb|AAF01280
1_8010001_8040000					A	B	C	D	P	P'	N
	Cluster:7-1				4	261	2	4396	1.3973503E-4	4.1920505E-4	3
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
5_19230001_19260000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL06-09-N04	At5g48180 / Kelch repeats protein family		RAFL06-09-N04 ,At5g48180 kelch repeat-containing protein contains Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe]
5_15090001_15120000					A	B	C	D	P	P'	N
	Cluster:0-0				11	25	3	4624	3.840276E-22	1.5361104E-21	4
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
1_27630001_27660000					A	B	C	D	P	P'	N
	Cluster:1-2				4	170	2	4487	2.6508811E-5	5.3017622E-5	2
		RAFL03-09-C14	At1g74470 / geranylgeranyl reductase		RAFL03-09-C14 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-16-B07	At1g74470 / geranylgeranyl reductase		RAFL04-16-B07 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL08-12-D18	At1g74470 / geranylgeranyl reductase		RAFL08-12-D18 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-09-F13	At1g74470 / geranylgeranyl reductase		RAFL07-09-F13 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	Cluster:0-2				2	77	4	4580	0.0040679234	0.008135847	2
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
4_6390001_6420000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-13-A12	At4g12550 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At4g12550 ,RAFL06-13-A12 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234; identical to cDNA AIR1 mRNA, partial cds GI:3695016
5_2490001_2520000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL08-10-H13	At5g07830 / glycosyl hydrolase family 79 (endo-beta-glucuronidase/heparanase)		At5g07830 ,RAFL08-10-H13 glycosyl hydrolase family 79 N-terminal domain-containing protein similar to beta-glucuronidase GI:8918740 from [Scutellaria baicalensis]
5_600001_900000					A	B	C	D	P	P'	N
	Cluster:7-0				4	243	16	4400	0.01901638	0.20918018	11
		RAFL05-18-L21	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-18-L21 polyubiquitin (UBQ3) identical to GI:928809
		RAFL06-08-I12	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL06-08-I12 polyubiquitin (UBQ3) identical to GI:928809
		RAFL04-14-D12	At5g03230 / expressed protein		At5g03230 ,RAFL04-14-D12 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584
		RAFL05-21-L02	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-21-L02 polyubiquitin (UBQ3) identical to GI:928809
4_7830001_7860000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-15-A04	At4g15560 / DEF (CLA1) protein		At4g15560 ,RAFL04-15-A04 1-deoxy-D-xylulose 5-phosphate synthase, putative / 1-deoxyxylulose-5-phosphate synthase, putative / DXP-synthase, putative (DEF) (CLA1) identical to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate synthase, chloroplast precursor (EC 4.1.3.37) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF (deficient in photosynthesis) protein [Arabidopsis thaliana] GI:1399261
2_16590001_16620000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-16-P04	At2g39900 / LIM-domain protein -related		At2g39900 ,RAFL06-16-P04 LIM domain-containing protein similar to pollen specific LIM domain protein 1b [Nicotiana tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida] GI:4105772; contains Pfam profile PF00412: LIM domain
4_2700001_3000000					A	B	C	D	P	P'	N
	Cluster:8-1				4	158	2	4499	1.9951145E-5	5.985344E-5	3
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
5_8610001_8640000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-16-K11	At5g25110 / CBL-interacting protein kinase 25		RAFL05-16-K11 ,At5g25110 CBL-interacting protein kinase 25 (CIPK25) identical to CBL-interacting protein kinase 25 [Arabidopsis thaliana] gi|17646697|gb|AAL41008
3_15390001_15420000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-C07	At3g43520 / expressed protein		At3g43520 ,RAFL08-09-C07 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136)
1_4200001_4500000					A	B	C	D	P	P'	N
	Cluster:4-1				5	305	12	4341	0.0039994735	0.043994207	11
		RAFL06-10-N03	At1g12410 / ATP-dependent Clp protease proteolytic subunit (ClpR2)		At1g12410 ,RAFL06-10-N03 ATP-dependent Clp protease proteolytic subunit (ClpP2) identical to nClpP2 GI:5360589 from [Arabidopsis thaliana]
		RAFL07-08-J17	At1g13060 / 20S proteasome beta subunit E1 (PBE1)		At1g13060 ,RAFL07-08-J17 20S proteasome beta subunit E1 (PBE1) (PRCE) identical to GB:O23717; identical to cDNA proteasome subunit prce GI:2511595
		RAFL05-10-E01	At1g12370 / type II CPD photolyase PHR1 (PHR1)		At1g12370 ,RAFL05-10-E01 type II CPD photolyase PHR1 (PHR1) nearly identical to type II CPD photolyase PHR1 [Arabidopsis thaliana] GI:2984707; similar to class II DNA photolyase (GI:5081541) [Chlamydomonas reinhardtii]; supporting cDNA gi|2984706|gb|AF053365.1|AF053365
		RAFL05-05-L13	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL05-05-L13 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
		RAFL11-04-I04	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL11-04-I04 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
1_11430001_11460000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-06-F07	At1g31910 / expressed protein		RAFL09-06-F07 ,At1g31910 GHMP kinase family protein contains TIGRFAM profile TIGR01219: phosphomevalonate kinase; contains Pfam PF00288: GHMP kinases putative ATP-binding protein domain; similar to Phosphomevalonate kinase (EC 2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
1_11580001_11610000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-11-H22	At1g32210 / defender against cell death protein -related		RAFL05-11-H22 ,At1g32210 defender against cell death 1 (DAD1) identical to defender against cell death 1 (DAD-1, AtDAD1) [Arabidopsis thaliana] SWISS-PROT:Q39080
4_12630001_12660000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-10-H05	At4g27350 / membrane lipo protein lipid attachment site-containing expressed protein		At4g27350 ,RAFL05-10-H05 expressed protein
2_17100001_17400000					A	B	C	D	P	P'	N
	Cluster:10-0				2	22	9	4630	0.0013575538	0.01086043	8
		RAFL05-09-P10	At2g41190 / amino acid transporter family		RAFL05-09-P10 ,At2g41190 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
		RAFL05-20-J01	At2g41190 / amino acid transporter family		At2g41190 ,RAFL05-20-J01 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
	Cluster:7-2				2	62	9	4590	0.009418122	0.07534497	8
		RAFL06-10-F19	At2g41430 / ERD15 protein		At2g41430 ,RAFL06-10-F19 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
		RAFL02-08-C02	At2g41430 / ERD15 protein		At2g41430 ,RAFL02-08-C02 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
5_16500001_16530000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	3	4624	0.030535331	0.122141324	4
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
4_12660001_12690000					A	B	C	D	P	P'	N
	Cluster:10-1				2	41	4	4616	0.0012172027	0.004868811	4
		RAFL09-15-E01	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL09-15-E01 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
		RAFL05-21-C17	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL05-21-C17 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
	Cluster:10-0				1	23	5	4634	0.030502912	0.12201165	4
		RAFL08-14-A19	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL08-14-A19 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
	Cluster:7-0				2	245	4	4412	0.036386058	0.14554423	4
		RAFL05-03-O06	At4g27390 / expressed protein		RAFL05-03-O06 ,At4g27390 expressed protein hypothetical protein, Synechocystis sp., PIR2:S77328
		RAFL05-12-B14	At4g27390 / expressed protein		At4g27390 ,RAFL05-12-B14 expressed protein hypothetical protein, Synechocystis sp., PIR2:S77328
4_14340001_14370000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-G10	At4g31810 / 3-hydroxyisobutyryl-coenzyme A hydrolase (CoA-thioester hydrolase) family		At4g31810 ,RAFL05-21-G10 enoyl-CoA hydratase/isomerase family protein similar to CHY1 [gi:8572760]; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein
1_2070001_2100000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-16-P20	At1g06760 / histone H1, putative		At1g06760 ,RAFL05-16-P20 histone H1, putative similar to histone H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana]; identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560
5_26460001_26490000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL07-13-A16	At5g67030 / zeaxanthin epoxidase precursor (LOS6/ABA1)(ZEP)		At5g67030 ,RAFL07-13-A16 zeaxanthin epoxidase (ZEP) (ABA1) identical to GI:9857296 AtABA1; controls Pfam profiles PF01360: Monooxygenase and PF00498: FHA domain; identical to cDNA AtABA1, GI:9857295
4_10950001_10980000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-09-K20	At4g22880 / leucoanthocyanidin dioxygenase (anthocyanidin synthase) (LDOX/ANS), putative		At4g22880 ,RAFL06-09-K20 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative similar to SP|P51091 [Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase superfamily
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-C11	At4g22820 / zinc finger -related protein		At4g22820 ,RAFL05-14-C11 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
1_7950001_7980000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-13-C22	At1g22510 / C3HC4-type zinc finger protein family		At1g22510 ,RAFL04-13-C22 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
1_8400001_8700000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	8	4493	0.044944704	0.40450233	9
		RAFL05-01-K23	At1g23780 / F-box protein family		RAFL05-01-K23 ,At1g23780 F-box family protein contains Pfam PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only protein 7 {Homo sapiens}; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
		RAFL05-07-D16	At1g23800 / mitochondrial aldehyde dehydrogenase (ALDH3)		At1g23800 ,RAFL05-07-D16 aldehyde dehydrogenase, mitochondrial (ALDH3) nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 [Arabidopsis thaliana] gi|19850249|gb|AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein
1_20700001_20730000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-09-J19	At1g56450 / 20S proteasome beta subunit G1 (PBG1)		RAFL04-09-J19 ,At1g56450 20S proteasome beta subunit G1 (PBG1) (PRCH) identical to 20S proteasome beta subunit (PBG1) GI:3421123 [Arabidopsis thaliana]; identical to cDNA proteasome subunit prch GI:2511597
2_8400001_8430000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-09-P04	At2g19590 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At2g19590 ,RAFL05-09-P04 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to ACC oxidase [Cucumis melo][GI:1183898]
4_9270001_9300000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-11-L18	At4g18810 / expressed protein		RAFL05-11-L18 ,At4g18810 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364
2_9780001_9810000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-10-D13	At2g23120 / expressed protein		RAFL04-10-D13 ,At2g23120 expressed protein
4_15660001_15690000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-05-A20	At4g35110 / expressed protein		At4g35110 ,RAFL05-05-A20 expressed protein
1_3120001_3150000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-11-J01	At1g09690 / 60S ribosomal protein L21 (RPL21C)		RAFL06-11-J01 ,At1g09690 60S ribosomal protein L21 (RPL21C) Similar to ribosomal protein L21 (gb|L38826). ESTs gb|AA395597,gb|ATTS5197 come from this gene
1_27030001_27060000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-10-K19	At1g72750 / inner mitochondrial membrane protein		At1g72750 ,RAFL05-10-K19 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17
5_23700001_24000000					A	B	C	D	P	P'	N
	Cluster:8-0				4	105	9	4545	1.7171161E-4	0.0012019812	7
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
	Cluster:7-2				2	62	11	4588	0.013122933	0.09186053	7
		RAFL08-08-B13	At5g59730 / exocyst subunit EXO70 family		RAFL08-08-B13 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
		RAFL09-18-E12	At5g59730 / exocyst subunit EXO70 family		RAFL09-18-E12 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
	Cluster:2-1				3	241	10	4409	0.027396575	0.19177602	7
		RAFL04-10-F11	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL04-10-F11 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL07-08-L21	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL07-08-L21 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL04-16-B10	At5g59540 / oxidoreductase, 2OG-Fe(II) oxygenase family		RAFL04-16-B10 ,At5g59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to desacetoxyvindoline-4-hydroxylase [Catharanthus roseus] GI:2352812; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
5_17310001_17340000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL07-10-D18	At5g43830 / aluminum-induced protein-related		At5g43830 ,RAFL07-10-D18 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI:2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI:451193
1_26250001_26280000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL05-07-N11	At1g70580 / alanine aminotransferase, putative		RAFL05-07-N11 ,At1g70580 glutamate:glyoxylate aminotransferase 2 (GGT2) identical to glutamate:glyoxylate aminotransferase 2 [Arabidopsis thaliana] GI:24461829; similar to alanine aminotransferase from Panicum miliaceum [SP|P34106], GI:4730884 from Oryza sativa; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL04-09-J06	At1g70600 / 60S ribosomal protein L27A (RPL27aC)		At1g70600 ,RAFL04-09-J06 60S ribosomal protein L27A (RPL27aC) identical to 60S ribosomal protein L27A GB:P49637 [Arabidopsis thaliana]
3_7860001_7890000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-15-L10	At3g22300 / 40S ribosomal protein S10, mitochondrial precursor		At3g22300 ,RAFL04-15-L10 40S ribosomal protein S10, mitochondrial (RPS10) identical to SP|P42797 40S ribosomal protein S10, mitochondrial precursor {Arabidopsis thaliana}
5_60001_90000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL06-07-E03	At5g01220 / UDP-sulfoquinovose:DAG sulfoquinovosyltransferase (sulfolipid synthase) (SQD2)		RAFL06-07-E03 ,At5g01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2) identical to GI:20302857
3_15900001_15930000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL04-17-L19	At3g44190 / pyridine nucleotide-disulphide oxidoreductase family		At3g44190 ,RAFL04-17-L19 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum [GI:472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain
4_7230001_7260000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-F02	At4g14360 / dehydration-induced protein-related		At4g14360 ,RAFL07-08-F02 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
2_8730001_8760000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-15-O22	At2g20420 / succinyl-CoA ligase beta subunit		RAFL05-15-O22 ,At2g20420 succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative identical to SP|O82662 Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS- beta) {Arabidopsis thaliana}; similar to SP|O97580 Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.5) {Sus scrofa}; contains Pfam profiles PF00549: CoA-ligase, PF02222: ATP-grasp domain
5_3990001_4020000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-14-K23	At5g12370 / expressed protein		At5g12370 ,RAFL04-14-K23 exocyst complex component Sec10-related low similarity to SP|O00471 Exocyst complex component Sec10 (hSec10) {Homo sapiens}
1_2400001_2700000					A	B	C	D	P	P'	N
	Cluster:2-0				6	144	29	4484	7.5164216E-4	0.012026275	16
		RAFL08-18-F01	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-18-F01 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL05-02-L21	At1g07830 / ribosomal protein L29p family		At1g07830 ,RAFL05-02-L21 ribosomal protein L29 family protein similar to GB:CAA83057 from [Saccharomyces cerevisiae]
		RAFL03-08-O03	At1g07940 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-08-O03 ,At1g07940 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL09-13-F11	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL09-13-F11 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL07-17-I21	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL07-17-I21 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL08-09-H17	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-09-H17 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
	Cluster:0-2				3	76	32	4552	0.020758273	0.33213237	16
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
	Cluster:3-0				5	228	30	4400	0.02841909	0.45470545	16
		RAFL11-04-A02	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL11-04-A02 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
		RAFL07-11-D02	At1g08520 / magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin IX chelatase) (CHLD), putative		RAFL07-11-D02 ,At1g08520 magnesium-chelatase subunit chlD, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum sativum]
		RAFL03-05-E07	At1g07920 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-05-E07 ,At1g07920 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL06-08-M13	At1g07920 / elongation factor 1-alpha (EF-1-alpha)		RAFL06-08-M13 ,At1g07920 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL05-02-J02	At1g08490 / nitrogen fixation protein. putative (NifS)		RAFL05-02-J02 ,At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V
2_510001_540000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL04-13-G03	At2g02130 / plant defensin protein, putative (PDF2.3)		At2g02130 ,RAFL04-13-G03 plant defensin-fusion protein, putative (PDF2.3) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be)
		RAFL05-08-E12	At2g02100 / plant defensin protein, putative (PDF2.2)		RAFL05-08-E12 ,At2g02100 plant defensin-fusion protein, putative (PDF2.2) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT:O65740
1_4020001_4050000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-L15	At1g12000 / pyrophosphate-fructose-6-phosphate 1-phosphotransferase -related		At1g12000 ,RAFL07-12-L15 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase
4_16710001_16740000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL07-10-C24	At4g37790 / Homeobox-leucine zipper protein HAT22 (HD-ZIP protein 22)		RAFL07-10-C24 ,At4g37790 homeobox-leucine zipper protein 22 (HAT22) / HD-ZIP protein 22 identical to homeobox-leucine zipper protein HAT22 (HD-ZIP protein 22) (SP:P46604) [Arabidopsis thaliana]
5_5490001_5520000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL06-09-I24	At5g16750 / transducin / WD-40 repeat protein family		RAFL06-09-I24 ,At5g16750 transducin family protein / WD-40 repeat family protein contains 8 WD-40 repeats (PF00400); similar to transducin homolog sazD - Homo sapiens, EMBL:U02609
5_5700001_6000000					A	B	C	D	P	P'	N
	Cluster:1-2				5	169	18	4471	0.0013294822	0.015953787	12
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
	Cluster:4-2				3	132	20	4508	0.027520001	0.33024	12
		RAFL05-12-F21	At5g17770 / NADH-cytochrome b5 reductase		At5g17770 ,RAFL05-12-F21 NADH-cytochrome b5 reductase identical to NADH-cytochrome b5 reductase [Arabidopsis thaliana] GI:4240116
		RAFL04-14-P20	At5g17710 / chloroplast GrpE protein		RAFL04-14-P20 ,At5g17710 co-chaperone grpE family protein similar to co-chaperone CGE1 precursor isoform a [Chlamydomonas reinhardtii] GI:15384277; contains Pfam profile PF01025: co-chaperone GrpE
		RAFL09-07-F07	At5g17670 / expressed protein		At5g17670 ,RAFL09-07-F07 expressed protein
3_16890001_16920000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	2	4594	0.0011979077	0.0035937233	3
		RAFL04-09-M06	At3g45970 / expansin protein family (EXPL1)		RAFL04-09-M06 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL06-12-F13	At3g45970 / expansin protein family (EXPL1)		RAFL06-12-F13 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
2_14910001_14940000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-18-N23	At2g35650 / glycosyltransferase family 2		RAFL05-18-N23 ,At2g35650 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535; identical to cDNA for partial mRNA for glycosyltransferase (cslA07 gene) GI:28551963
2_900001_1200000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	5	4425	0.044206142	0.26523685	6
		RAFL05-08-A02	At2g03680 / nitrilase-associated protein -related		At2g03680 ,RAFL05-08-A02 expressed protein Alternative splicing exists based on EST evidence
		RAFL06-07-F15	At2g03120 / expressed protein		At2g03120 ,RAFL06-07-F15 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435)
5_17100001_17400000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	8	4546	0.021556646	0.12933987	6
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
		RAFL04-17-M08	At5g43450 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL04-17-M08 ,At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967)
	Cluster:4-2				2	133	8	4520	0.032153092	0.19291855	6
		RAFL05-04-D23	At5g43940 / alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase) (GSH-FDH) (ADHIII)		At5g43940 ,RAFL05-04-D23 alcohol dehydrogenase class III / glutathione-dependent formaldehyde dehydrogenase / GSH-FDH (ADHIII) identical to gi:1143388
		RAFL07-10-D18	At5g43830 / aluminum-induced protein-related		At5g43830 ,RAFL07-10-D18 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI:2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI:451193
2_19020001_19050000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL09-12-N16	At2g46510 / bHLH protein family		RAFL09-12-N16 ,At2g46510 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain
		RAFL05-09-M21	At2g46470 / OXA1 protein (OXA1p), putative		RAFL05-09-M21 ,At2g46470 OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI:10176922
5_2400001_2700000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	6	4552	0.012871708	0.06435854	5
		RAFL04-14-F18	At5g08260 / serine carboxypeptidase II -related		RAFL04-14-F18 ,At5g08260 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; carboxypeptidase D - Triticum aestivum, PIR:A29639
		RAFL05-07-L19	At5g07690 / myb family transcription factor		RAFL05-07-L19 ,At5g07690 myb family transcription factor (MYB29) similar to myb transcription factor GI:3941436 from [Arabidopsis thaliana]
1_13140001_13170000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-18-B15	At1g35620 / protein disulfide isomerase family		RAFL04-18-B15 ,At1g35620 thioredoxin family protein similar to SP|Q43116 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Ricinus communis}; contains Pfam profile PF00085: Thioredoxin
1_25350001_25380000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-N11	At1g68530 / very-long-chain fatty acid condensing enzyme (CUT1)		At1g68530 ,RAFL05-04-N11 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999))
4_11610001_11640000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	2	4624	0.02362106	0.07086318	3
		RAFL04-17-O17	At4g24510 / CER2		At4g24510 ,RAFL04-17-O17 eceriferum protein (CER2) identical to (CER2) [Arabidopsis thaliana] GI:1213594; contains Pfam profile PF02458: Transferase family
4_12060001_12090000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-10-P05	At4g25740 / 40S ribosomal protein S10 (RPS10A)		At4g25740 ,RAFL04-10-P05 40S ribosomal protein S10 (RPS10A) 40S ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
4_11700001_11730000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-20-C13	At4g24750 / expressed protein		RAFL04-20-C13 ,At4g24750 expressed protein
3_8100001_8130000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	1	4609	3.7755756E-4	7.551151E-4	2
		RAFL07-10-P11	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-10-P11 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
		RAFL07-12-E10	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-12-E10 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
1_26400001_26700000					A	B	C	D	P	P'	N
	Cluster:6-0				3	137	7	4516	0.0027225881	0.019058116	7
		RAFL08-09-C08	At1g71070 / N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme family)		At1g71070 ,RAFL08-09-C08 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glucosaminyl (N-acetyl) transferase GB:4758422 from [Homo sapiens]
		RAFL05-18-P09	At1g71695 / peroxidase, putative		RAFL05-18-P09 ,At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) identical to SP|Q96520 Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) {Arabidopsis thaliana}
		RAFL04-20-C09	At1g71780 / expressed protein		RAFL04-20-C09 ,At1g71780 expressed protein
2_12870001_12900000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL06-07-B08	At2g30360 / CBL-interacting protein kinase 11		At2g30360 ,RAFL06-07-B08 CBL-interacting protein kinase 11 (CIPK11) identical to CBL-interacting protein kinase 11 [Arabidopsis thaliana] gi|13249121|gb|AAK16686; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 11 (CIPK11)partial cds GI:13249120
3_8040001_8070000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-14-G15	At3g22780 / DNA binding protein -related		RAFL04-14-G15 ,At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425
4_150001_180000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
2_13980001_14010000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-10-H19	At2g33140 / tRNA-Met		At2g33140 ,RAFL09-10-H19 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL09-10-H19
3_22980001_23010000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-14-G23	At3g62030 / peptidylprolyl isomerase ROC4		At3g62030 ,RAFL07-14-G23 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) identical to peptidyl-prolyl cis-trans isomerase, chloroplast precursor, PPIase (cyclophilin, cyclosporin A-binding protein) [Arabidopsis thaliana] SWISS-PROT:P34791; identical to cDNA nuclear-encoded chloroplast stromal cyclophilin (ROC4) GI:405130
1_600001_900000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	11	4370	0.048468865	0.48468864	10
		RAFL07-18-K04	At1g02850 / glycosyl hydrolase family 1		RAFL07-18-K04 ,At1g02850 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL09-06-G17	At1g02850 / glycosyl hydrolase family 1		At1g02850 ,RAFL09-06-G17 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL07-14-E05	At1g02920 / glutathione transferase, putative		RAFL07-14-E05 ,At1g02920 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA GI:443697.
4_13500001_13800000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	8	4505	0.039047353	0.31237882	8
		RAFL04-10-J05	At4g30170 / peroxidase, putative		RAFL04-10-J05 ,At4g30170 peroxidase, putative identical to peroxidase ATP8a [Arabidopsis thaliana] gi|1546706|emb|CAA67361
		RAFL07-09-N06	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,RAFL07-09-N06 ATPase 2, plasma membrane-type, putative / proton pump 2, putative / proton-exporting ATPase, putative strong similarity to SP|P19456 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
1_28800001_29100000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	5	4621	0.046698898	0.2801934	6
		RAFL09-07-M15	At1g77760 / nitrate reductase 1 (NR1)		RAFL09-07-M15 ,At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana}
5_17670001_17700000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL11-02-K06	At5g44580 / expressed protein		At5g44580 ,RAFL11-02-K06 expressed protein
1_18510001_18540000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL04-12-F24	At1g51090 / heavy-metal-associated domain-containing protein		At1g51090 ,RAFL04-12-F24 heavy-metal-associated domain-containing protein contains Pfam profile PF00403: Heavy-metal-associated domain
2_12000001_15000000					A	B	C	D	P	P'	N
	Cluster:3-0				11	222	102	4328	0.02746028	0.8512687	31
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
		RAFL07-17-K15	At2g31040 / expressed protein		RAFL07-17-K15 ,At2g31040 ATP synthase protein I -related contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I [Synechococcus sp.]
		RAFL04-09-F23	At2g31610 / 40S ribosomal protein S3 (RPS3A)		RAFL04-09-F23 ,At2g31610 40S ribosomal protein S3 (RPS3A)
		RAFL08-14-P10	At2g30410 / TCP1-chaperonin cofactor A isolog		RAFL08-14-P10 ,At2g30410 tubulin folding cofactor A (KIESEL) identical to cDNA tubulin folding cofactor A, GI:20514256, SP|O04350 Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A homolog) {Arabidopsis thaliana}
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL09-06-J09	At2g32860 / glycosyl hydrolase family 1		RAFL09-06-J09 ,At2g32860 glycosyl hydrolase family 1 protein
		RAFL09-07-K24	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL09-07-K24 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL09-07-B08	At2g30970 / aspartate aminotransferase, mitochondrial (transaminase A/Asp1)		At2g30970 ,RAFL09-07-B08 aspartate aminotransferase, mitochondrial / transaminase A (ASP1) identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
		RAFL06-08-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL06-08-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL11-04-H04	At2g34480 / 60S ribosomal protein L18A (RPL18aB)		At2g34480 ,RAFL11-04-H04 60S ribosomal protein L18A (RPL18aB)
5_660001_690000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL07-09-N07	At5g02940 / expressed protein		At5g02940 ,RAFL07-09-N07 expressed protein
1_27780001_27810000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	7	4551	0.016308056	0.114156395	7
		RAFL07-16-O21	At1g74970 / ribosomal protein S9 -related		At1g74970 ,RAFL07-16-O21 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946
		RAFL06-11-O06	At1g74940 / senescence-associated protein -related		RAFL06-11-O06 ,At1g74940 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana]
1_28800001_28830000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-15-D11	At1g77610 / glucose-6-phosphate/phosphate translocator-related		At1g77610 ,RAFL09-15-D11 glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate-translocators from [Mesembryanthemum crystallinum] GI:9295277, [Solanum tuberosum] GI:2997593, [Pisum sativum] GI:2997591; contains Pfam profile PF00892: Integral membrane protein
2_18150001_18180000					A	B	C	D	P	P'	N
	Cluster:4-0				3	237	1	4422	5.1836955E-4	0.0010367391	2
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
5_8100001_8130000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-12-E12	At5g24080 / protein kinase family		At5g24080 ,RAFL08-12-E12 protein kinase family protein contains protein kinase domain, Pfam:PF00069
1_29100001_29400000					A	B	C	D	P	P'	N
	Cluster:6-0				3	137	22	4501	0.037596792	0.6015487	16
		RAFL09-18-I11	At1g78820 / curculin-like (mannose-binding) lectin family		At1g78820 ,RAFL09-18-I11 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
		RAFL05-17-L16	At1g79010 / NADH dehydrogenase -related		RAFL05-17-L16 ,At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) identical to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD) {Arabidopsis thaliana}
		RAFL09-06-A15	At1g78820 / curculin-like (mannose-binding) lectin family		RAFL09-06-A15 ,At1g78820 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
2_10800001_10830000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-16-D08	At2g25510 / expressed protein		RAFL06-16-D08 ,At2g25510 expressed protein
2_17670001_17700000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-P13	At2g42600 / phosphoenolpyruvate carboxylase		At2g42600 ,RAFL05-21-P13 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase
5_7800001_8100000					A	B	C	D	P	P'	N
	Cluster:5-1				4	278	10	4371	0.008082774	0.072744966	9
		RAFL07-17-N07	At5g23890 / expressed protein		At5g23890 ,RAFL07-17-N07 expressed protein weak similarity to SP|P12957 Caldesmon (CDM) {Gallus gallus}
		RAFL08-12-D06	At5g23660 / nodulin MtN3 family protein		At5g23660 ,RAFL08-12-D06 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]
		RAFL08-11-O19	At5g23670 / serine C-palmitoyltransferase, putative		At5g23670 ,RAFL08-11-O19 serine C-palmitoyltransferase (LCB2) identical to serine palmitoyltransferase [Arabidopsis thaliana] GI:9309380; similar to serine palmitoyltransferase from Solanum tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL05-15-M17	At5g23390 / expressed protein		At5g23390 ,RAFL05-15-M17 expressed protein contains Pfam profile: PF04842 plant protein of unknown function (DUF639)
	Cluster:2-1				3	241	11	4408	0.033551577	0.3019642	9
		RAFL09-15-M15	At5g23740 / 40S ribosomal protein S11 (RPS11C)		RAFL09-15-M15 ,At5g23740 40S ribosomal protein S11 (RPS11C)
		RAFL05-16-O05	At5g23820 / expressed protein		At5g23820 ,RAFL05-16-O05 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain
		RAFL08-16-E23	At5g23530 / expressed protein		RAFL08-16-E23 ,At5g23530 expressed protein contains similarity to PrMC3 [Pinus radiata] GI:5487873
4_10410001_10440000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-14-D05	At4g21570 / expressed protein		At4g21570 ,RAFL05-14-D05 expressed protein contains Pfam profile PF03619: Domain of unknown function
3_8490001_8520000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-I07	At3g23670 / phragmoplast-associated kinesin-related protein, putative		At3g23670 ,RAFL04-20-I07 phragmoplast-associated kinesin-related protein, putative similar to kinesin like protein GB:CAB10194 from [Arabidopsis thaliana]
3_22200001_22230000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL09-12-B03	At3g60140 / glycosyl hydrolase family 1, beta-glucosidase		At3g60140 ,RAFL09-12-B03 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547
1_2640001_2670000					A	B	C	D	P	P'	N
	Cluster:0-2				3	76	0	4584	4.6826926E-6	4.6826926E-6	1
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
2_15150001_15180000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-11-K10	At2g36270 / ABA-responsive element binding protein, putative		At2g36270 ,RAFL06-11-K10 bZIP transcription factor family protein / ABA-responsive element-binding protein, putative similar to ABA-responsive element binding protein 1 (AREB1) GI:9967417 from [Arabidopsis thaliana]; contains a bZIP transcription factor basic domain signature (PDOC00036)
2_1110001_1140000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-08-A02	At2g03680 / nitrilase-associated protein -related		At2g03680 ,RAFL05-08-A02 expressed protein Alternative splicing exists based on EST evidence
1_12000001_15000000					A	B	C	D	P	P'	N
	Cluster:7-1				6	259	25	4373	0.0070306235	0.105459355	15
		RAFL07-13-L09	At1g33980 / expressed protein		At1g33980 ,RAFL07-13-L09 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens]
		RAFL08-13-A20	At1g33230 / expressed protein		At1g33230 ,RAFL08-13-A20 expressed protein
		RAFL09-15-I11	At1g37130 / nitrate reductase 2 (NR2)		RAFL09-15-I11 ,At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL07-07-K16	At1g35670 / calcium-dependent protein kinase (CDPK)		RAFL07-07-K16 ,At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL05-05-F21	At1g34370 / zinc finger protein -related		At1g34370 ,RAFL05-05-F21 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL07-07-A03	At1g36730 / Eukaryotic translation initiation factor 5 -related		At1g36730 ,RAFL07-07-A03 eukaryotic translation initiation factor 5, putative / eIF-5, putative similar to SP|P55876 Eukaryotic translation initiation factor 5 (eIF-5) {Zea mays}; contains Pfam profiles PF02020: eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in IF2B/IF5
	Cluster:5-2				3	123	28	4509	0.049966265	0.749494	15
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
5_24870001_24900000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	0	4558	5.023252E-4	5.023252E-4	1
		RAFL09-10-P21	At5g62700 / tubulin beta-2/beta-3 chain (TUB3)		At5g62700 ,RAFL09-10-P21 tubulin beta-2/beta-3 chain (TUB3) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana}
		RAFL09-14-F08	At5g62670 / ATPase, plasma membrane-type (proton pump), putative		At5g62670 ,RAFL09-14-F08 ATPase, plasma membrane-type, putative / proton pump, putative strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia [SP|Q08435, SP|Q08436], Lycopersicon esculentum [GI:5901757, SP|P22180], Solanum tuberosum [GI:435003]; contains InterPro accession IPR001757: ATPase, E1-E2 type
5_2790001_2820000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-19-A22	At5g08650 / GTP-binding protein LepA, putative		RAFL04-19-A22 ,At5g08650 GTP-binding protein LepA, putative
2_12930001_12960000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL09-17-I24	At2g30510 / unknown similar to AGI		RAFL09-17-I24 ,At2g30510 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL09-17-I24
2_8250001_8280000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-09-G02	At2g19170 / subtilisin-like serine protease		At2g19170 ,RAFL07-09-G02 subtilase family protein contains similarity to meiotic serine proteinase TMP GI:6468325 from [Lycopersicon esculentum]
2_2280001_2310000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-10-N22	At2g05940 / protein kinase, putative		RAFL08-10-N22 ,At2g05940 protein kinase, putative similar to auxin-regulated dual specificity cytosolic kinase [Lycopersicon esculentum] gi|14484938|gb|AAK62821
1_21120001_21150000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-16-A02	At1g58200 / expressed protein		At1g58200 ,RAFL05-16-A02 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel
1_20550001_20580000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	4	4426	0.0037112702	0.014845081	4
		RAFL08-12-J19	At1g56070 / elongation factor -related		RAFL08-12-J19 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-13-C01	At1g56070 / elongation factor -related		RAFL04-13-C01 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL07-10-D07	At1g56070 / elongation factor -related		RAFL07-10-D07 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	Cluster:4-0				2	238	5	4418	0.046670057	0.18668023	4
		RAFL07-11-O12	At1g56070 / elongation factor -related		RAFL07-11-O12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-17-N12	At1g56070 / elongation factor -related		RAFL04-17-N12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
3_180001_210000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	2	4625	3.443902E-4	0.0010331706	3
		RAFL06-13-B01	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-13-B01 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
		RAFL06-11-K17	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-11-K17 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
2_2760001_2790000					A	B	C	D	P	P'	N
	Cluster:0-1				3	103	0	4557	1.1423829E-5	1.1423829E-5	1
		RAFL11-02-K17	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL11-02-K17 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL08-17-A06	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL08-17-A06 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL07-10-G09	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL07-10-G09 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
2_13080001_13110000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	3	4623	0.031373426	0.1254937	4
		RAFL06-10-G18	At2g30870 / glutathione transferase, putative		RAFL06-10-G18 ,At2g30870 glutathione S-transferase, putative supported by cDNA GI:443698 GB:D17673
3_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	7	4346	0.02459708	0.14758249	6
		RAFL05-07-O11	At3g06650 / ATP citrate lyase -related		RAFL05-07-O11 ,At3g06650 ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate cleavage enzyme, putative strong similarity to ATP:citrate lyase [Capsicum annuum] GI:13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain
		RAFL05-05-O12	At3g06570 / Kelch repeat containing F-box protein family		RAFL05-05-O12 ,At3g06570 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344
		RAFL05-09-E15	At3g06483 / pyruvate dehydrogenase (lipoamide) kinase (pdhk)		RAFL05-09-E15 ,At3g06483 pyruvate dehydrogenase (lipoamide) kinase (PDHK) nearly identical to pyruvate dehydrogenase kinase [Arabidopsis thaliana] GI:3641834
5_9720001_9750000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL04-09-C14	At5g27640 / eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta / eIF3 p110 / eIF3b)		At5g27640 ,RAFL04-09-C14 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
		RAFL05-04-A18	At5g27670 / histone H2A, putative		RAFL05-04-A18 ,At5g27670 histone H2A, putative similar to histone H2A Lycopersicon esculentum SP|P25469, Pisum sativum SP|P25470, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
5_120001_150000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-08-J06	At5g01350 / expressed protein		RAFL08-08-J06 ,At5g01350 expressed protein
3_7140001_7170000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL07-13-F01	At3g20500 / calcineurin-like phosphoesterase family		At3g20500 ,RAFL07-13-F01 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
5_20940001_20970000					A	B	C	D	P	P'	N
	Cluster:10-0				3	21	0	4639	1.1985192E-7	1.1985192E-7	1
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
4_6810001_6840000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-01-M18	At4g13510 / ammonium transport protein (AMT1)		RAFL05-01-M18 ,At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1;1) {Arabidopsis thaliana}
5_14460001_14490000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-C22	At5g37300 / expressed protein		RAFL08-12-C22 ,At5g37300 expressed protein
5_24540001_24570000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	4	4616	0.045284163	0.22642082	5
		RAFL05-14-G18	At5g61820 / expressed protein		At5g61820 ,RAFL05-14-G18 expressed protein MtN19, Medicago truncatula, EMBL:MTY15367
2_12030001_12060000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-08-O13	At2g28320 / expressed protein		RAFL07-08-O13 ,At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein contains Pfam profiles PF01852: START domain, PF00169: PH domain
1_4380001_4410000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL05-05-L13	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL05-05-L13 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
		RAFL11-04-I04	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL11-04-I04 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
3_22920001_22950000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	0	4639	0.005146901	0.005146901	1
		RAFL11-01-J18	At3g61890 / homeobox-leucine zipper protein ATHB-12 (HD-Zip transcription factor Athb-12)		RAFL11-01-J18 ,At3g61890 homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 identical to homeobox-leucine zipper protein ATHB-12 (GI:6899887) [Arabidopsis thaliana]
3_8520001_8550000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL07-18-A18	At3g23700 / expressed protein		At3g23700 ,RAFL07-18-A18 S1 RNA-binding domain-containing protein contains Pfam domain, PF00575: S1 RNA binding domain
3_15180001_15210000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-J05	At3g43190 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At3g43190 ,RAFL05-07-J05 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1)
3_9420001_9450000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL09-16-M01	At3g25830 / myrcene/ocimene synthase, putative		At3g25830 ,RAFL09-16-M01 myrcene/ocimene synthase, putative similar to myrcene/ocimene synthase [Arabidopsis thaliana] GI:9957293; contains Pfam profiles PF03936: Terpene synthase family, metal binding domain, PF01397: Terpene synthase, N-terminal domain
1_26370001_26400000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	1	4488	0.0040519224	0.008103845	2
		RAFL06-08-E11	At1g70890 / major latex protein (MLP)-related		RAFL06-08-E11 ,At1g70890 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294062] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-10-I20	At1g70940 / auxin transport protein, putative (PIN3)		RAFL09-10-I20 ,At1g70940 auxin transport protein, putative (PIN3) similar to auxin transport protein [Arabidopsis thaliana] gi|5817301|gb|AAD52695
3_18930001_18960000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-14-G09	At3g51000 / epoxide hydrolase, putative		At3g51000 ,RAFL09-14-G09 epoxide hydrolase, putative similar to epoxide hydrolase [Glycine max] GI:2764806; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
3_18180001_18210000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-20-P19	At3g49110 / peroxidase		RAFL04-20-P19 ,At3g49110 peroxidase 33 (PER33) (P33) (PRXCA) / neutral peroxidase C (PERC) identical to SP|P24101 Peroxidase 33 precursor (EC 1.11.1.7) (Atperox P33) (ATPCa) (Neutral peroxidase C) (PERC) {Arabidopsis thaliana}
3_9030001_9060000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-12-A17	At3g24740 / expressed protein		RAFL06-12-A17 ,At3g24740 expressed protein
1_3870001_3900000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-15-L23	At1g11580 / pectin methylesterase, putative		RAFL05-15-L23 ,At1g11580 pectin methylesterase, putative similar to pectin methylesterase GI:1617583 from [Lycopersicon esculentum]
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-12-M07	At1g11580 / pectin methylesterase, putative		RAFL09-12-M07 ,At1g11580 pectin methylesterase, putative similar to pectin methylesterase GI:1617583 from [Lycopersicon esculentum]
3_5280001_5310000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	0	4639	0.005146901	0.005146901	1
		RAFL05-09-G08	At3g15670 / late embryogenesis abundant (LEA) protein, putative		At3g15670 ,RAFL05-09-G08 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
5_5880001_5910000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-20-J21	At5g17870 / plastid-specific ribosomal protein 6 precursor (Psrp-6) - like		RAFL04-20-J21 ,At5g17870 plastid-specific ribosomal protein-related contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from [Spinacia oleracea]
3_9900001_9930000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL07-08-A14	At3g26890 / expressed protein		RAFL07-08-A14 ,At3g26890 expressed protein
3_17640001_17670000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-10-G07	At3g47860 / expressed protein		At3g47860 ,RAFL04-10-G07 apolipoprotein D-related contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot:P51910) [Mus musculus]
3_2880001_2910000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-03-P08	At3g09390 / metallothionein-related protein		At3g09390 ,RAFL05-03-P08 metallothionein protein, putative (MT2A) identical to Swiss-Prot:P25860 metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) [Arabidopsis thaliana]
1_6540001_6570000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-19-H01	At1g19000 / myb family transcription factor		At1g19000 ,RAFL05-19-H01 myb family transcription factor similar to MybSt1 GI:7705206 from [Solanum tuberosum]
4_14640001_14670000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-02-A17	At4g32520 / glycine hydroxymethyltransferase (EC 2.1.2.1) - like protein		RAFL05-02-A17 ,At4g32520 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
1_6240001_6270000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-18-L07	At1g18210 / calcium-binding protein, putative		RAFL05-18-L07 ,At1g18210 calcium-binding protein, putative similar to SP|Q9M7R0 Calcium-binding allergen Ole e 8 (PCA18/PCA23) {Olea europaea}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
3_18870001_18900000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL05-17-B17	At3g50820 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL05-17-B17 ,At3g50820 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative (PSBO2) identical to SP:Q9S841 Oxygen-evolving enhancer protein 1-2, chloroplast precursor (OEE1) [Arabidopsis thaliana]; strong similarity to SP|P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) {Arabidopsis thaliana}
1_5520001_5550000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-13-G15	At1g16170 / expressed protein		At1g16170 ,RAFL04-13-G15 expressed protein
1_23700001_23730000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-C08	At1g64770 / expressed protein		RAFL07-08-C08 ,At1g64770 expressed protein
1_26700001_26730000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-10-F15	At1g71900 / expressed protein		RAFL05-10-F15 ,At1g71900 expressed protein
		RAFL07-17-J24	At1g71880 / sucrose transporter SUC1 (sucrose-proton symporter)		At1g71880 ,RAFL07-17-J24 sucrose transporter / sucrose-proton symporter (SUC1) identical to sucrose-proton symporter SUC1 [Arabidopsis thaliana] GI:407094
3_6900001_7200000					A	B	C	D	P	P'	N
	Cluster:3-1				5	211	9	4438	2.892519E-4	0.002603267	9
		RAFL05-14-P22	At3g20320 / expressed protein		At3g20320 ,RAFL05-14-P22 mce-related family protein contains Pfam PF02470: mce related protein
		RAFL04-09-P17	At3g19960 / myosin		RAFL04-09-P17 ,At3g19960 myosin (ATM) nearly identical to myosin [Arabidopsis thaliana] GI:6491702; similar to myosin GI:6491702 from [Arabidopsis thaliana] ;contains Pfam profiles: PF00063: myosin head (motor domain), PF00612: IQ calmodulin-binding motif; identical to cDNA myosin (ATM) GI:297068
		RAFL07-11-N11	At3g19930 / sugar transport protein STP4		RAFL07-11-N11 ,At3g19930 sugar transport protein (STP4) identical to GB:S25009 GI:16524 from [Arabidopsis thaliana]
		RAFL08-12-L05	At3g20000 / membrane import protein -related		RAFL08-12-L05 ,At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin
		RAFL07-16-F16	At3g20330 / aspartate carbamoyltransferase precursor (aspartate transcarbamylase)		RAFL07-16-F16 ,At3g20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana}
1_28440001_28470000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-H13	At1g76710 / SET-domain transcriptional regulator family		RAFL05-08-H13 ,At1g76710 SET domain-containing protein (ASHH1) low similarity to huntingtin interacting protein 1 [Homo sapiens] GI:12697196; contains Pfam profile PF00856: SET domain; identical to cDNA ASH1-like protein 1 (ASHH1) partial cds GI:15488417
2_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:4-0				10	230	75	4348	0.011240412	0.2810103	25
		RAFL07-08-P19	At2g19650 / CHP-rich zinc finger protein, putative		At2g19650 ,RAFL07-08-P19 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain
		RAFL11-05-K19	At2g20230 / expressed protein		At2g20230 ,RAFL11-05-K19 expressed protein
		RAFL08-13-K01	At2g18160 / bZIP family transcription factor		RAFL08-13-K01 ,At2g18160 bZIP transcription factor family protein contains a bZIP transcription factor basic domain signature (PDOC00036)
		RAFL05-10-J18	At2g15890 / expressed protein		At2g15890 ,RAFL05-10-J18 expressed protein
		RAFL05-12-M02	At2g20490 / expressed protein		At2g20490 ,RAFL05-12-M02 nucleolar RNA-binding Nop10p family protein similar to Nop10p (GI:8096260) [Homo sapiens]
		RAFL04-10-N15	At2g20725 / CAAX amino terminal protease family		At2g20725 ,RAFL04-10-N15 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein
		RAFL11-04-F01	At2g18900 / transducin / WD-40 repeat protein family		RAFL11-04-F01 ,At2g18900 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) [Leishmania donovani]
		RAFL05-16-A08	At2g16600 / cytosolic cyclophilin (ROC3)		At2g16600 ,RAFL05-16-A08 peptidyl-prolyl cis-trans isomerase, cytosolic / cyclophilin / rotamase (ROC3) identical to cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
		RAFL09-13-F17	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL09-13-F17 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL06-08-O23	At2g18280 / F-box containing tubby family protein		RAFL06-08-O23 ,At2g18280 tubby-like protein 2 (TULP2) identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
3_3270001_3300000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-18-N12	At3g10500 / expressed protein		At3g10500 ,RAFL05-18-N12 no apical meristem (NAM) family protein similar to to NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam PF02365: No apical meristem (NAM) protein
3_6120001_6150000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-12-B20	At3g17940 / aldose 1-epimerase family		RAFL04-12-B20 ,At3g17940 aldose 1-epimerase family protein similar to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149] from [Acinetobacter calcoaceticus]; contains Pfam profile PF01263 Aldose 1-epimerase
2_9000001_12000000					A	B	C	D	P	P'	N
	Cluster:6-2				11	165	91	4396	0.0014492914	0.042029448	29
		RAFL02-03-H08	At2g26670 / heme oxygenase 1 (HO1)		At2g26670 ,RAFL02-03-H08 heme oxygenase 1 (HO1) (HY1) identical to plastid heme oxygenase (HY1) [Arabidopsis thaliana] GI:4877362, heme oxygenase 1 [Arabidopsis thaliana] GI:4530591 GB:AF132475; annotation updated per Seth J. Davis at University of Wisconsin-Madison
		RAFL05-07-G15	At2g27730 / expressed protein		At2g27730 ,RAFL05-07-G15 expressed protein contains 1 transmembrane domain; similar to Unknown mitochondrial protein At2g27730 (Swiss-Prot:Q9ZUX4) [Arabidopsis thaliana] similar to F1F0-ATPase inhibitor protein (GI:5821432) [Oryza sativa]
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
		RAFL05-09-N13	At2g21380 / kinesin-related protein		RAFL05-09-N13 ,At2g21380 kinesin motor protein-related
		RAFL04-19-D24	At2g23070 / casein kinase II alpha chain, putative		At2g23070 ,RAFL04-19-D24 casein kinase II alpha chain, putative similar to casein kinase II, alpha chain (CK II) [Zea mays] SWISS-PROT:P28523; contains protein kinase domain, Pfam:PF00069
		RAFL04-20-M06	At2g27260 / expressed protein		At2g27260 ,RAFL04-20-M06 expressed protein
		RAFL02-03-L07	At2g26250 / beta-ketoacyl-CoA synthase family (FIDDLEHEAD) (FDH)		At2g26250 ,RAFL02-03-L07 beta-ketoacyl-CoA synthase family (FIDDLEHEAD) (FDH) identical to GB:AJ010713 (fiddlehead protein)
		RAFL05-17-H03	At2g25430 / expressed protein		RAFL05-17-H03 ,At2g25430 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain;
		RAFL05-09-N19	At2g25850 / poly(A) polymerase -related		At2g25850 ,RAFL05-09-N19 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain; identical to cDNA GI:31747890
		RAFL08-11-P15	At2g25520 / phosphate translocator-related		At2g25520 ,RAFL08-11-P15 phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275
		RAFL02-07-O01	At2g24270 / NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative		RAFL02-07-O01 ,At2g24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase [NADP+]) [Nicotiana plumbaginifolia] SWISS-PROT:P93338
	Cluster:0-1				7	99	95	4462	0.008086153	0.23449846	29
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL06-16-D08	At2g25510 / expressed protein		RAFL06-16-D08 ,At2g25510 expressed protein
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
3_18540001_18570000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-I18	At3g50000 / casein kinase II alpha chain 2		At3g50000 ,RAFL05-09-I18 casein kinase II alpha chain 2 identical to casein kinase II, alpha chain 2 (CK II) [Arabidopsis thaliana] SWISS-PROT:Q08466
1_27600001_27900000					A	B	C	D	P	P'	N
	Cluster:0-2				3	76	16	4568	0.0037301949	0.03730195	10
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	Cluster:1-2				4	170	15	4474	0.004676684	0.04676684	10
		RAFL03-09-C14	At1g74470 / geranylgeranyl reductase		RAFL03-09-C14 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-16-B07	At1g74470 / geranylgeranyl reductase		RAFL04-16-B07 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL08-12-D18	At1g74470 / geranylgeranyl reductase		RAFL08-12-D18 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-09-F13	At1g74470 / geranylgeranyl reductase		RAFL07-09-F13 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
4_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-16-J23	At4g36040 / DnaJ protein family		RAFL09-16-J23 ,At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) identical to dnaJ heat shock protein J11 [Arabidopsis thaliana] GI:9843641; contains Pfam profile PF00226 DnaJ domain
3_240001_270000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-10-F10	At3g01690 / expressed protein		RAFL06-10-F10 ,At3g01690 expressed protein
Chromosome:5					A	B	C	D	P	P'	N
	Cluster:0-0				18	18	999	3628	1.7040157E-4	0.0056232517	33
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL07-09-P04	At5g53140 / protein phosphatase 2C (PP2C), putative		RAFL07-09-P04 ,At5g53140 protein phosphatase 2C, putative / PP2C, putative
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-17-N17	At5g25460 / expressed protein		At5g25460 ,RAFL04-17-N17 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
		RAFL07-10-I15	At5g23060 / expressed protein		At5g23060 ,RAFL07-10-I15 expressed protein
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL04-09-K06	At5g20630 / germin-like protein (AtGER3)		RAFL04-09-K06 ,At5g20630 germin-like protein (GER3) identical to germin-like protein subfamily 3 member 3 [SP|P94072]
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	Cluster:1-2				52	122	965	3524	0.011277354	0.3721527	33
		RAFL07-18-K03	At5g11880 / diaminopimelate decarboxylase - like protein		At5g11880 ,RAFL07-18-K03 diaminopimelate decarboxylase, putative / DAP carboxylase, putative similar to diaminopimelate decarboxylase [Arabidopsis thaliana] GI:6562332; contains Pfam profiles PF02784: Pyridoxal-dependent decarboxylase pyridoxal binding domain, PF00278: Pyridoxal-dependent decarboxylase C-terminal sheet domain
		RAFL05-03-F16	At5g50940 / expressed gene		At5g50940 ,RAFL05-03-F16 expressed protein There's conflicting, but high quality data supporting a variety of gene structures. Each variant is presented here.
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL04-13-N12	At5g57490 / porin-related protein		RAFL04-13-N12 ,At5g57490 porin, putative similar to 36kDA porin II [Solanum tuberosum] GI:515360; contains Pfam profile PF01459: Eukaryotic porin
		RAFL09-07-P20	At5g15350 / plastocyanin-like domain containing protein		At5g15350 ,RAFL09-07-P20 plastocyanin-like domain-containing protein contains plastocyanin-like domain Pfam:PF02298
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-07-E13	At5g33320 / triose phosphate/phosphate translocator, putative		At5g33320 ,RAFL06-07-E13 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea}
		RAFL06-13-L16	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL06-13-L16 40S ribosomal protein S4 (RPS4B)
		RAFL09-06-G11	At5g57930 / expressed protein		At5g57930 ,RAFL09-06-G11 expressed protein
		RAFL09-10-I03	At5g13930 / chalcone synthase (naringenin-chalcone synthase)		At5g13930 ,RAFL09-10-I03 chalcone synthase / naringenin-chalcone synthase identical to SP|P13114
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
		RAFL09-15-L15	At5g12250 / tubulin beta-6 chain (TUB6)		At5g12250 ,RAFL09-15-L15 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
		RAFL06-10-D03	At5g67510 / 60S ribosomal protein L26 (RPL26B)		At5g67510 ,RAFL06-10-D03 60S ribosomal protein L26 (RPL26B)
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL05-13-F24	At5g55710 / expressed protein		RAFL05-13-F24 ,At5g55710 expressed protein
		RAFL06-16-L14	At5g48760 / 60S ribosomal protein L13A (RPL13aD)		RAFL06-16-L14 ,At5g48760 60S ribosomal protein L13A (RPL13aD)
		RAFL05-07-G14	At5g16400 / thioredoxin, putative		At5g16400 ,RAFL05-07-G14 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-07-F17	At5g19780 / tubulin alpha-3/alpha-5 chain (TUA5)		At5g19780 ,RAFL05-07-F17 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL07-08-E09	At5g49030 / isoleucyl-tRNA synthetase		RAFL07-08-E09 ,At5g49030 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
		RAFL06-11-B12	At5g10840 / endomembrane protein 70, putative		RAFL06-11-B12 ,At5g10840 endomembrane protein 70, putative TM4 family;
		RAFL04-18-N15	At5g23860 / beta tubulin		RAFL04-18-N15 ,At5g23860 tubulin beta-8 chain (TUB8) (TUBB8) identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,RAFL03-03-A07 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL05-03-L24	At5g60670 / 60S ribosomal protein L12 (RPL12C)		RAFL05-03-L24 ,At5g60670 60S ribosomal protein L12 (RPL12C) 60S RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana, PIR:T45883
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-07-M17	At5g04140 / glutamate synthase (ferredoxin) (ferredoxin-dependent glutamate synthase/glu1/Fd-GOGAT 1)		RAFL07-07-M17 ,At5g04140 glutamate synthase (GLU1) / ferredoxin-dependent glutamate synthase (Fd-GOGAT 1) identical to ferredoxin-dependent glutamate synthase precursor [Arabidopsis thaliana] GI:3869251
		RAFL07-18-H17	At5g48300 / glucose-1-phosphate adenylyltransferase, small subunit, chloroplast (ADP-glucose pyrophosphorylase) (APS1)		At5g48300 ,RAFL07-18-H17 glucose-1-phosphate adenylyltransferase small subunit 1 (APS1) / ADP-glucose pyrophosphorylase (ADG1) identical to SP|P55228
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL11-12-B10 ,At5g66570 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL05-13-B09	At5g03300 / pfkB type carbohydrate kinase protein family		At5g03300 ,RAFL05-13-B09 adenosine kinase 2 (ADK2) contains Pfam profile: PF00294 pfkB family carbohydrate kinase; identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K24	At5g12860 / oxoglutarate/malate translocator, putative		RAFL11-01-K24 ,At5g12860 oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-09-F20	At5g19770 / tubulin alpha-3/alpha-5 chain (TUA3)		At5g19770 ,RAFL06-09-F20 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL04-18-D08	At5g53490 / thylakoid lumenal 17.4 kD pentapeptide repeat family protein, chloroplast precursor		At5g53490 ,RAFL04-18-D08 thylakoid lumenal 17.4 kDa protein, chloroplast identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}
		RAFL06-15-E15	At5g28290 / protein kinase, putative		At5g28290 ,RAFL06-15-E15 protein kinase, putative similar to LSTK-1-like kinase [Lycopersicon esculentum] GI:15637110; contains Pfam profile: PF00069 Eukaryotic protein kinase domain
		RAFL11-02-K03	At5g18230 / expressed protein		At5g18230 ,RAFL11-02-K03 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2 / NOT3 / NOT5 family
		RAFL05-13-G24	At5g54600 / 50S ribosomal protein L24, chloroplast precursor (CL24)		At5g54600 ,RAFL05-13-G24 50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana}
		RAFL07-18-J10	At5g25610 / dehydration-induced protein RD22		At5g25610 ,RAFL07-18-J10 dehydration-responsive protein (RD22) identical to SP|Q08298 Dehydration-responsive protein RD22 precursor {Arabidopsis thaliana}
		RAFL07-17-M22	At5g61790 / calnexin 1 (CNX1)		At5g61790 ,RAFL07-17-M22 calnexin 1 (CNX1) identical to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]
		RAFL06-15-J04	At5g11480 / GTP-binding protein -related		RAFL06-15-J04 ,At5g11480 expressed protein
		RAFL05-18-H13	At5g65220 / ribosomal protein L29p family		RAFL05-18-H13 ,At5g65220 ribosomal protein L29 family protein contains Pfam profile PF00831: ribosomal protein L29
		RAFL05-02-B22	At5g22640 / expressed protein		RAFL05-02-B22 ,At5g22640 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat
		RAFL11-04-D23	At5g42765 / expressed protein		At5g42765 ,RAFL11-04-D23 expressed protein
		RAFL07-18-K16	At5g03760 / glycosyltransferase family 2		At5g03760 ,RAFL07-18-K16 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
2_14160001_14190000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-14-E15	At2g33590 / cinnamoyl-CoA reductase family		At2g33590 ,RAFL05-14-E15 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Eucalyptus gunnii [GI:2058311]
5_18300001_18600000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	7	4482	0.041940216	0.33552173	8
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
5_24570001_24600000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	0	4398	0.0032181933	0.0032181933	1
		RAFL07-15-O05	At5g61960 / Meiosis protein mei2-related		At5g61960 ,RAFL07-15-O05 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122
		RAFL08-16-K22	At5g61960 / Meiosis protein mei2-related		At5g61960 ,RAFL08-16-K22 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122
2_11310001_11340000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-10-K15	At2g26730 / leucine-rich repeat transmembrane protein kinase, putative		At2g26730 ,RAFL07-10-K15 leucine-rich repeat transmembrane protein kinase, putative
5_24000001_27000000					A	B	C	D	P	P'	N
	Cluster:2-0				10	140	151	4362	0.038271654	1.1481496	30
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-12-H19	At5g60640 / protein disulfide isomerase family		At5g60640 ,RAFL05-12-H19 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-02-F20	At5g65360 / histone H3		RAFL05-02-F20 ,At5g65360 histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
		RAFL07-09-K24	At5g64300 / GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase (emb|CAA03884.1)		At5g64300 ,RAFL07-09-K24 riboflavin biosynthesis protein, putative (RIBA) similar to SP|P47924 {Arabidopsis thaliana}, SP|P51695 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Bacillus amyloliquefaciens}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase
		RAFL09-06-E02	At5g61790 / calnexin 1 (CNX1)		At5g61790 ,RAFL09-06-E02 calnexin 1 (CNX1) identical to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]
		RAFL11-04-C09	At5g66690 / UDP-glycosyltransferase family		At5g66690 ,RAFL11-04-C09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-05-B16	At5g63890 / histidinol dehydrogenase		RAFL05-05-B16 ,At5g63890 histidinol dehydrogenase, putative / HDH, putative strong similarity to SP|P24226 Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) {Brassica oleracea var.capitata}; contains Pfam profile PF00815: histidinol dehydrogenase
		RAFL07-09-O18	At5g64290 / oxoglutarate/malate translocator, putative		At5g64290 ,RAFL07-09-O18 oxoglutarate/malate translocator, putative similar to SWISS-PROT:Q41364 2-oxoglutarate/malate translocator, chloroplast precursor. [Spinach]{Spinacia oleracea}
5_2640001_2670000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	1	4352	0.012636807	0.025273614	2
		RAFL06-11-P24	At5g08300 / succinyl-CoA-ligase alpha subunit		At5g08300 ,RAFL06-11-P24 succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative identical to SP|P53586 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, alpha chain) (SCS-alpha) {Arabidopsis thaliana}; strong similarity to SP|P13086 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor {Rattus norvegicus}; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain
		RAFL02-01-E05	At5g08290 / YLS8, Dim1 homolog		At5g08290 ,RAFL02-01-E05 yellow-leaf-specific protein 8 (YLS8) / mitosis protein DIM1, putative contains Pfam domain PF02966: Mitosis protein DIM1; identical to cDNA YLS8 mRNA for Dim1 homolog GI:13122293
5_24720001_24750000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-07-A12	At5g62300 / 40S ribosomal protein S20 (RPS20C)		RAFL11-07-A12 ,At5g62300 40S ribosomal protein S20 (RPS20C) ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
2_2400001_2700000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-19-N12	At2g06520 / expressed protein		At2g06520 ,RAFL05-19-N12 membrane protein, putative contains 2 transmembrane domains;
1_25950001_25980000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-16-B15	At1g69870 / peptide transporter -related		At1g69870 ,RAFL05-16-B15 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL02-03-F05	At1g69890 / expressed protein		RAFL02-03-F05 ,At1g69890 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569
1_27960001_27990000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
4_11580001_11610000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-L01	At4g24400 / CBL-interacting protein kinase 8		RAFL05-07-L01 ,At4g24400 CBL-interacting protein kinase 8 (CIPK8) identical to CBL-interacting protein kinase 8 [Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
4_11160001_11190000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-08-M19	At4g23400 / major intrinsic protein (MIP) family		RAFL06-08-M19 ,At4g23400 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230
5_24090001_24120000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-03-L24	At5g60670 / 60S ribosomal protein L12 (RPL12C)		RAFL05-03-L24 ,At5g60670 60S ribosomal protein L12 (RPL12C) 60S RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana, PIR:T45883
1_21300001_21600000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	3	4345	0.039689664	0.15875866	4
		RAFL08-10-K09	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-10-K09 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
		RAFL08-14-K24	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-14-K24 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
2_18060001_18090000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	3	4345	0.039689664	0.15875866	4
		RAFL09-18-M22	At2g43790 / mitogen-activated protein kinase (MAPK), putative (MPK6)		At2g43790 ,RAFL09-18-M22 mitogen-activated protein kinase, putative / MAPK, putative (MPK6) identical to mitogen-activated protein kinase homolog 6 (AtMPK6)[Arabidopsis thaliana] SWISS-PROT:Q39026; PMID:12119167
		RAFL05-05-A23	At2g43780 / expressed protein		RAFL05-05-A23 ,At2g43780 expressed protein
3_3570001_3600000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL09-06-P14	At3g11420 / fringe-related protein		RAFL09-06-P14 ,At3g11420 fringe-related protein similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling.
5_780001_810000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-B09	At5g03300 / pfkB type carbohydrate kinase protein family		At5g03300 ,RAFL05-13-B09 adenosine kinase 2 (ADK2) contains Pfam profile: PF00294 pfkB family carbohydrate kinase; identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
3_17970001_18000000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-15-C04	At3g48520 / cytochrome P450 family		At3g48520 ,RAFL05-15-C04 cytochrome P450 family protein similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450
3_4170001_4200000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL07-09-H13	At3g13040 / expressed protein		At3g13040 ,RAFL07-09-H13 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL05-17-J10	At3g13040 / expressed protein		RAFL05-17-J10 ,At3g13040 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
1_29940001_29970000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-12-G04	At1g80560 / 3-isopropylmalate dehydrogenase, chloroplast, putative		At1g80560 ,RAFL07-12-G04 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102 SP|P29102 from [Brassica napus]
2_19590001_19620000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	1	4415	0.008091402	0.016182804	2
		RAFL05-13-O08	At2g48020 / sugar transporter, putative		RAFL05-13-O08 ,At2g48020 sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein
		RAFL11-01-G07	At2g48070 / expressed protein		RAFL11-01-G07 ,At2g48070 expressed protein
2_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:2-0				10	140	139	4374	0.027998626	0.89595604	32
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL09-07-E24	At2g36530 / enolase (2-phospho-D-glycerate hydroylase)		At2g36530 ,RAFL09-07-E24 enolase identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) [Arabidopsis thaliana]
		RAFL09-14-H22	At2g38170 / calcium exchanger (CAX1)		At2g38170 ,RAFL09-14-H22 calcium exchanger (CAX1) identical to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL05-21-H13	At2g42190 / expressed protein		RAFL05-21-H13 ,At2g42190 expressed protein ; similar to GP|9826|X07453
		RAFL06-15-I18	At2g40590 / 40S ribosomal protein S26 (RPS26B)		RAFL06-15-I18 ,At2g40590 40S ribosomal protein S26 (RPS26B)
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL06-07-L23	At2g39670 / expressed protein		RAFL06-07-L23 ,At2g39670 radical SAM domain-containing protein similar to hypothetical protein PIR|S76698|S76698 contains Pfam profile PF04055: radical SAM domain protein
		RAFL06-08-J02	At2g37130 / peroxidase, putative (ATP2a)		RAFL06-08-J02 ,At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) identical to SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
5_7620001_7650000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL08-09-P06	At5g22920 / PGPD14 protein		RAFL08-09-P06 ,At5g22920 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles:PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 type (RING finger)
4_2490001_2520000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-07-D15	At4g04940 / transducin / WD-40 repeat protein family		At4g04940 ,RAFL07-07-D15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats
5_1_3000000					A	B	C	D	P	P'	N
	Cluster:2-1				14	230	121	4298	0.015853178	0.4597422	29
		RAFL06-11-K09	At5g03850 / 40S ribosomal protein S28 (RPS28B)		RAFL06-11-K09 ,At5g03850 40S ribosomal protein S28 (RPS28B) ribosomal protein S28, Arabidopsis thaliana, EMBL:ATRP28A
		RAFL08-09-J20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-09-J20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-14-M14	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-M14 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL09-14-E08	At5g06340 / diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative		RAFL09-14-E08 ,At5g06340 diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI:1888557, [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain
		RAFL08-15-K17	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL08-15-K17 40S ribosomal protein S4 (RPS4B)
		RAFL02-04-I12	At5g04430 / KH domain protein Nova, putative		At5g04430 ,RAFL02-04-I12 KH domain-containing protein NOVA, putative astrocytic NOVA-like RNA-binding protein, Homo sapiens, U70477
		RAFL08-10-A13	At5g04590 / sulphite reductase		At5g04590 ,RAFL08-10-A13 sulfite reductase / ferredoxin (SIR) identical to sulfite reductase [Arabidopsis thaliana] GI:804953, GI:2584721
		RAFL06-08-F19	At5g02120 / one helix protein (OHP)		RAFL06-08-F19 ,At5g02120 thylakoid membrane one helix protein (OHP) identical to one helix protein GI:3283057 from [Arabidopsis thaliana]
		RAFL05-05-M24	At5g02960 / 40S ribosomal protein S23 (RPS23B)		At5g02960 ,RAFL05-05-M24 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673
		RAFL06-15-O15	At5g09220 / amino acid permease 2 (AAP2)		At5g09220 ,RAFL06-15-O15 amino acid permease 2 (AAP2) identical to amine acid permease AAP2 [Arabidopsis thaliana] GI:510236
		RAFL08-14-N17	At5g07020 / proline-rich protein family		RAFL08-14-N17 ,At5g07020 proline-rich family protein
		RAFL08-17-E06	At5g07860 / hydroxycinnamoyl benzoyltransferase-related		At5g07860 ,RAFL08-17-E06 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi:2239091]; contains Pfam transferase family domain PF002458
		RAFL05-12-E19	At5g07340 / calnexin, putative		At5g07340 ,RAFL05-12-E19 calnexin, putative identical to calnexin homolog 2 from Arabidopsis thaliana [SP|Q38798], strong similarity to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262 calreticulin family
		RAFL09-12-B05	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL09-12-B05 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
5_19290001_19320000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL09-06-H02	At5g48380 / leucine rich repeat protein family		At5g48380 ,RAFL09-06-H02 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
		RAFL09-12-F09	At5g48380 / leucine rich repeat protein family		RAFL09-12-F09 ,At5g48380 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
1_11370001_11400000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-14-F21	At1g31780 / expressed protein		At1g31780 ,RAFL05-14-F21 conserved oligomeric Golgi complex component-related / COG complex component-related similar to Conserved oligomeric Golgi complex component 6 (Swiss-Prot:Q9Y2V7) [Homo sapiens];
3_5490001_5520000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-20-D12	At3g16250 / ferredoxin - related		RAFL04-20-D12 ,At3g16250 ferredoxin-related contains Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding domains
		RAFL06-09-P22	At3g16240 / delta tonoplast integral protein (delta-TIP)		At3g16240 ,RAFL06-09-P22 delta tonoplast integral protein (delta-TIP) identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis thaliana] (Plant Cell 8 (4), 587-599 (1996))
4_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:10-2				4	105	35	4519	0.012387993	0.24775985	20
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL05-09-D16	At4g11220 / expressed protein		At4g11220 ,RAFL05-09-D16 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
3_3600001_3630000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL06-08-B09	At3g11510 / 40S ribosomal protein S14 (RPS14B)		At3g11510 ,RAFL06-08-B09 40S ribosomal protein S14 (RPS14B) similar to 40S ribosomal protein S14 GB:P19950 [Zea mays]
		RAFL06-10-G07	At3g11500 / small nuclear ribonucleo protein polypeptide G -related		At3g11500 ,RAFL06-10-G07 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens]
4_9420001_9450000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-17-N14	At4g19120 / ERD3 protein		At4g19120 ,RAFL04-17-N14 early-responsive to dehydration stress protein (ERD3) identical to ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase; identical to cDNA ERD3 GI:15320409
5_10200001_10500000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	3	4416	0.024550742	0.098202966	4
		RAFL06-08-N05	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL06-08-N05 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
		RAFL07-11-O19	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL07-11-O19 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
3_4020001_4050000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL07-09-M01	At3g12740 / membrane protein common family		RAFL07-09-M01 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
		RAFL06-16-B16	At3g12740 / membrane protein common family		RAFL06-16-B16 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
4_16920001_16950000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-09-M02	At4g38400 / expansin protein family (EXPL2)		At4g38400 ,RAFL04-09-M02 expansin family protein (EXPL2) contains Pfam profile: PF01357 pollen allergen; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
1_5220001_5250000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-17-P16	At1g15220 / expressed protein		At1g15220 ,RAFL05-17-P16 cytochrome c biogenesis protein family contains Pfam PF03918: Cytochrome C biogenesis protein; similar to Cytochrome c-type biogenesis protein cycL precursor.(SP:P45405) {Bradyrhizobium japonicum}
		RAFL05-19-H19	At1g15180 / MATE efflux protein - related		RAFL05-19-H19 ,At1g15180 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family
5_19800001_19830000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL02-04-I05	At5g49540 / expressed protein		RAFL02-04-I05 ,At5g49540 expressed protein contains Pfam profile PF05646: Protein of unknown function (DUF786)
2_19500001_19530000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-05-E05	At2g47730 / glutathione transferase, putative (GST6)		RAFL05-05-E05 ,At2g47730 glutathione S-transferase 6 (GST6) identical to GB:X95295. Based on identical cDNA hits, the translation is now 40 AAs longer at the N-terminal, and start of exon2 is also corrected.
5_13890001_13920000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-10-D06	At5g36120 / expressed protein		At5g36120 ,RAFL06-10-D06 YGGT family protein contains Pfam profile PF02325: YGGT family (unknown function)
2_12840001_12870000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-19-E19	At2g30250 / WRKY family transcription factor		RAFL05-19-E19 ,At2g30250 WRKY family transcription factor
2_8970001_9000000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL04-17-A14	At2g21050 / amino acid permease, putative		At2g21050 ,RAFL04-17-A14 amino acid permease, putative similar to AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam profile PF01490: Transmembrane amino acid transporter protein
		RAFL07-15-P11	At2g21070 / hypothetical protein		RAFL07-15-P11 ,At2g21070 expressed protein
3_2010001_2040000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-11-O20	At3g06500 / neutral invertase -related		RAFL05-11-O20 ,At3g06500 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI:4200165; contains Pfam profile PF04853: Plant neutral invertase
1_27420001_27450000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-08-G07	At1g73920 / lipase family		At1g73920 ,RAFL08-08-G07 lipase family protein similar to lipase GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
1_27240001_27270000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-17-M22	At1g73390 / expressed protein		At1g73390 ,RAFL04-17-M22 expressed protein
1_10350001_10380000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	3	4624	0.030535331	0.122141324	4
		RAFL07-15-C21	At1g29660 / GDSL-motif lipase/hydrolase protein		RAFL07-15-C21 ,At1g29660 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL1 [Arabidopsis thaliana] GI:15054382; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-20-P21	At1g29670 / GDSL-motif lipase/hydrolase protein		RAFL04-20-P21 ,At1g29670 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL1 GI:15054382 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase/Acylhydrolase with GDSL-like motif
5_5940001_5970000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-15-E17	At5g17990 / anthranilate phosphoribosyltransferase		At5g17990 ,RAFL07-15-E17 anthranilate phosphoribosyltransferase identical to anthranilate phosphoribosyltransferase, chloroplast precursor (EC 2.4.2.18) SP:Q02166 from [Arabidopsis thaliana]
2_16230001_16260000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL03-08-H22	At2g39010 / major intrinsic protein aquaporin, putative		RAFL03-08-H22 ,At2g39010 aquaporin, putative similar to plasma membrane aquaporin 2b GI:7209560 from [Raphanus sativus]
2_10290001_10320000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
5_18390001_18420000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
1_21540001_21570000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL08-10-K09	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-10-K09 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
		RAFL08-14-K24	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-14-K24 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
5_570001_600000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-19-O24	At5g02610 / 60S ribosomal protein L35 (RPL35D)		RAFL04-19-O24 ,At5g02610 60S ribosomal protein L35 (RPL35D) ribosomal protein L35- cytosolic, Arabidopsis thaliana, PIR:T00549
5_17490001_17520000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-15-L02	At5g44190 / myb family transcription factor		At5g44190 ,RAFL05-15-L02 myb family transcription factor (GLK2) contains Pfam profile: PF00249 myb-like DNA-binding domain
5_2130001_2160000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-12-I04	At5g06870 / polygalacturonase inhibiting protein (PGIP2)		At5g06870 ,RAFL04-12-I04 polygalacturonase inhibiting protein 2 (PGIP2) identical to polygalacturonase inhibiting protein 2 (PGIP2) [Arabidopsis thaliana] gi|7800201|gb|AAF69828; contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
1_19260001_19290000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-05-F02	At1g52870 / expressed protein		RAFL05-05-F02 ,At1g52870 peroxisomal membrane protein-related contains weak similarity to Swiss-Prot:Q07066 22 kDa peroxisomal membrane protein [Rattus norvegicus]
4_8130001_8160000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	0	4416	1.4692015E-4	1.4692015E-4	1
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,RAFL11-12-D09 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL05-17-H06	At4g16190 / cysteine proteinase		RAFL05-17-H06 ,At4g16190 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,RAFL08-11-G18 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
3_23430001_23460000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-08-N09	At3g63490 / ribosomal protein L1p family		RAFL06-08-N09 ,At3g63490 ribosomal protein L1 family protein ribosomal protein L1, S.oleracea, EMBL:SORPL1
3_6480001_6510000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	1	4347	0.013038642	0.026077284	2
		RAFL06-16-B15	At3g18860 / transducin / WD-40 repeat protein family		At3g18860 ,RAFL06-16-B15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to phospholipase a-2-activating protein SP:P27612 from [Mus musculus]
		RAFL05-07-B02	At3g18820 / GTP-binding protein, putative		At3g18820 ,RAFL05-07-B02 Ras-related GTP-binding protein, putative similar to Ras-related protein RAB7 GI:1370186 from [Pisum sativum], Plant Mol. Biol. 21 (6), 1195-1199 (1993); contains Pfam profile: PF00071 Ras family
1_5760001_5790000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	1	4638	0.01026841	0.02053682	2
		RAFL05-21-F13	At1g16850 / expressed protein		At1g16850 ,RAFL05-21-F13 expressed protein
5_6810001_6840000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-13-E17	At5g20230 / plastocyanin-like domain containing protein		RAFL04-13-E17 ,At5g20230 plastocyanin-like domain-containing protein
2_18600001_18900000					A	B	C	D	P	P'	N
	Cluster:8-1				3	159	17	4484	0.03039473	0.48631567	16
		RAFL09-09-M22	At2g45600 / expressed protein		At2g45600 ,RAFL09-09-M22 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873
		RAFL05-09-B17	At2g45980 / expressed protein		RAFL05-09-B17 ,At2g45980 expressed protein
		RAFL05-05-A21	At2g45660 / MADS-box protein (AGL20)		At2g45660 ,RAFL05-05-A21 MADS-box protein (AGL20)
5_9300001_9600000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	5	4411	0.0067411438	0.03370572	5
		RAFL07-14-P04	At5g27150 / sodium proton exchanger (NHX1)		At5g27150 ,RAFL07-14-P04 sodium proton exchanger / Na+/H+ antiporter (NHX1) identical to Na+/H+ exchanger [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium proton exchanger Nhx1 [Arabidopsis thaliana] gi|4324597|gb|AAD16946; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
		RAFL05-04-M14	At5g27210 / expressed protein		RAFL05-04-M14 ,At5g27210 expressed protein weak similarity to seven transmembrane domain orphan receptor [Mus musculus] GI:4321619
		RAFL06-07-O17	At5g27280 / expressed protein		At5g27280 ,RAFL06-07-O17 zinc finger (DNL type) family protein contains Pfam profile PF05180: DNL zinc finger
	Cluster:2-0				2	148	6	4507	0.025339978	0.12669988	5
		RAFL07-12-J16	At5g27120 / SAR DNA-binding protein, putative		At5g27120 ,RAFL07-12-J16 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain
		RAFL06-11-M20	At5g26880 / expressed protein		At5g26880 ,RAFL06-11-M20 tRNA/rRNA methyltransferase (SpoU) family protein low similarity to tRNA (Gm18) methyltransferase [Thermus thermophilus] GI:11079208; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family
1_19710001_19740000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-04-F24	At1g53910 / AP2 domain protein RAP2.12		At1g53910 ,RAFL05-04-F24 AP2 domain-containing protein RAP2.12 (RAP2.12) identical to AP2 domain containing protein GI:2281649 from [Arabidopsis thaliana]
4_9900001_9930000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	1	4522	0.0026325006	0.005265001	2
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
5_25200001_25500000					A	B	C	D	P	P'	N
	Cluster:10-2				3	106	29	4525	0.037709244	0.6033479	16
		RAFL06-15-I24	At5g64080 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At5g64080 ,RAFL06-15-I24 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL05-10-H04	At5g64250 / 2-nitropropane dioxygenase-related protein		RAFL05-10-H04 ,At5g64250 2-nitropropane dioxygenase family / NPD family contains Pfam profile PF03060: oxidoreductase, 2-nitropropane dioxygenase (NPD) family
		RAFL08-15-B03	At5g64230 / expressed protein		RAFL08-15-B03 ,At5g64230 expressed protein
2_9480001_9510000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-18-N19	At2g22470 / arabinogalactan-protein (AGP2)		RAFL08-18-N19 ,At2g22470 arabinogalactan-protein (AGP2) identical to gi|3883122|gb|AAC77824; supported by cDNA gi|3883121|gb|AF082299
5_26400001_26700000					A	B	C	D	P	P'	N
	Cluster:6-2				3	173	14	4473	0.024334893	0.3163536	13
		RAFL05-16-L13	At5g67360 / subtilisin-like serine protease ARA12		RAFL05-16-L13 ,At5g67360 cucumisin-like serine protease (ARA12) Asp48; almost identical to cucumisin-like serine protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
		RAFL08-11-K21	At5g67250 / SKP1 interacting partner 2 (SKIP2)		RAFL08-11-K21 ,At5g67250 SKP1 interacting partner 2 (SKIP2) identical to SKP1 interacting partner 2 GI:10716949 from [Arabidopsis thaliana]
		RAFL09-18-J08	At5g67560 / ADP-ribosylation factor, putative		RAFL09-18-J08 ,At5g67560 ADP-ribosylation factor, putative identical to GP:15450888 ADP-ribosylation factor-like protein {Arabidopsis thaliana]
4_14700001_15000000					A	B	C	D	P	P'	N
	Cluster:0-2				6	73	7	4577	3.0488103E-8	2.4390482E-7	8
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
2_16500001_16530000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-14-B16	At2g39730 / auxin-regulated protein		At2g39730 ,RAFL05-14-B16 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana]
3_3990001_4020000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-06-L09	At3g12580 / heat shock protein hsp70		At3g12580 ,RAFL09-06-L09 heat shock protein 70, putative / HSP70, putative strong similarity to heat shock protein GI:425194 [Spinacia oleracea]
4_1080001_1110000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-05-I07	At4g02520 / glutathione transferase, putative		At4g02520 ,RAFL03-05-I07 glutathione S-transferase, putative
4_12780001_12810000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL05-17-G02	At4g27700 / rhodanese-like domain protein		At4g27700 ,RAFL05-17-G02 rhodanese-like domain-containing protein contains rhodanese-like domain PF00581
1_16350001_16380000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-16-G14	At1g44446 / chlorophyll a oxygenase (chlorophyll b synthase)		At1g44446 ,RAFL04-16-G14 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain
3_19860001_19890000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-08-F01	At3g53570 / protein kinase (AME2/AFC1)		At3g53570 ,RAFL05-08-F01 protein kinase (AFC1) (AME2) identical to protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
1_27330001_27360000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-M13	At1g73680 / feebly-related protein		RAFL05-13-M13 ,At1g73680 pathogen-responsive alpha-dioxygenase, putative similar to pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase
2_11040001_11070000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL09-06-E16	At2g26080 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At2g26080 ,RAFL09-06-E16 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P26969 Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) {Pisum sativum}; contains Pfam profile PF02347: Glycine cleavage system P-protein
4_720001_750000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-10-K21	At4g01690 / protoporphyrinogen oxidase (PPO) (PPOX)		At4g01690 ,RAFL05-10-K21 protoporphyrinogen oxidase (PPOX) identical to SP|P55826
4_13560001_13590000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-15-C16	At4g29820 / mRNA cleavage factor subunit - like protein		At4g29820 ,RAFL05-15-C16 expressed protein
1_29010001_29040000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-05-M05	At1g78080 / AP2 domain transcription factor RAP2.4		RAFL05-05-M05 ,At1g78080 AP2 domain-containing transcription factor RAP2.4 identical to AP2 domain containing protein GI:2281633 from [Arabidopsis thaliana]
5_19500001_19530000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	0	4430	0.0024866017	0.0024866017	1
		RAFL06-16-O18	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL06-16-O18 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
		RAFL04-13-N15	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL04-13-N15 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
3_360001_390000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	4	4349	0.00833001	0.04165005	5
		RAFL02-01-A08	At3g02090 / mitochondrial processing peptidase -related		RAFL02-01-A08 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL07-11-F08	At3g02090 / mitochondrial processing peptidase -related		RAFL07-11-F08 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL04-20-F07	At3g02090 / mitochondrial processing peptidase -related		RAFL04-20-F07 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
5_23220001_23250000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL09-09-K03	At5g58110 / expressed protein		RAFL09-09-K03 ,At5g58110 expressed protein predicted proteins, Homo sapiens and Drosophila melanogaster
		RAFL11-11-A11	At5g58130 / RRM-containing protein		At5g58130 ,RAFL11-11-A11 RNA recognition motif (RRM)-containing protein
1_2400001_2430000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	7	4521	0.02621311	0.20970488	8
		RAFL11-02-D23	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL11-02-D23 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
		RAFL09-17-F16	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL09-17-F16 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
1_750001_780000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL02-02-L10	At1g03130 / photosystem I reaction center subunit II precursor -related		RAFL02-02-L10 ,At1g03130 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
2_12990001_13020000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
2_16530001_16560000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	3	4345	0.039689664	0.15875866	4
		RAFL05-12-M22	At2g39760 / expressed protein		RAFL05-12-M22 ,At2g39760 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL11-05-B04	At2g39780 / S-like ribonuclease RNS2		RAFL11-05-B04 ,At2g39780 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459)
4_6480001_6510000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL06-07-K01	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-07-K01 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
		RAFL06-16-J22	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-16-J22 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
3_5610001_5640000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-02-D20	At3g16520 / glycosyltransferase family		At3g16520 ,RAFL05-02-D20 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
2_16200001_16230000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-09-H18	At2g38970 / C3HC4-type zinc finger protein family		At2g38970 ,RAFL04-09-H18 zinc finger (C3HC4-type RING finger) family protein very low similarity to SP|P97280 Inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mesocricetus auratus}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain
3_23340001_23370000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	2	4445	0.012046366	0.036139097	3
		RAFL03-02-H01	At3g63190 / expressed protein		At3g63190 ,RAFL03-02-H01 ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative similar to SP|P82231 Ribosome recycling factor, chloroplast precursor (Ribosome releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia oleracea}; contains Pfam profile PF01765: ribosome recycling factor
		RAFL06-10-C01	At3g63170 / expressed protein		At3g63170 ,RAFL06-10-C01 expressed protein
2_17310001_17340000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-B22	At2g41680 / thioredoxin reductase, putative		RAFL07-12-B22 ,At2g41680 thioredoxin reductase, putative / NADPH-dependent thioredoxin reductase, putative The last 2 exons encode thioredoxin. There is an EST match to exons 5-7, and the distance between exon 7 and exon 8 is only 90bp. It is unlikely this is two separate genes, but more likely a hybrid protein.
3_21900001_21930000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL03-09-F17	At3g59280 / expressed protein		RAFL03-09-F17 ,At3g59280 signaling molecule-related contains similarity to mitochondria-associated granulocyte macrophage CSF signaling molecule, mitochondrial precursor (CGI-136) [Mus musculus] SWISS-PROT:Q9CQV1
3_5550001_5580000					A	B	C	D	P	P'	N
	Cluster:5-1				4	278	7	4374	0.0030783936	0.021548755	7
		RAFL06-13-O22	At3g16400 / jacalin lectin family		At3g16400 ,RAFL06-13-O22 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL08-11-D18	At3g16400 / jacalin lectin family		RAFL08-11-D18 ,At3g16400 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL09-17-K06	At3g16400 / jacalin lectin family		At3g16400 ,RAFL09-17-K06 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL09-14-M02	At3g16400 / jacalin lectin family		At3g16400 ,RAFL09-14-M02 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
	Cluster:1-0				2	147	9	4505	0.04617144	0.32320008	7
		RAFL04-09-O21	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-09-O21 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
		RAFL04-20-A09	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-20-A09 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
1_22620001_22650000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-17-L12	At1g62180 / phosphoadenylyl-sulfate reductase (thioredoxin) (PAPS reductase), putative		At1g62180 ,RAFL09-17-L12 5'-adenylylsulfate reductase 2, chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate 5'-adenylylsulfate (APS) sulfotransferase 2 / 3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase homolog 43 (PRH-43) identical to SP|P92981 5'-adenylylsulfate reductase 2, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin independent APS reductase 2) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS reductase homolog (PRH43) GI:1710115
3_21300001_21600000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	8	4529	0.028284373	0.19799061	7
		RAFL04-18-F04	At3g58010 / expressed protein		At3g58010 ,RAFL04-18-F04 expressed protein
		RAFL05-19-J18	At3g58130 / hypothetical protein		RAFL05-19-J18 ,At3g58130 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related similar to SP|Q9Y2B2 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) {Homo sapiens}
3_17160001_17190000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-09-N12	At3g46600 / scarecrow transcription factor family		At3g46600 ,RAFL06-09-N12 scarecrow transcription factor family protein scarecrow-like 11 - Arabidopsis thaliana, EMBL:AF036307
1_2310001_2340000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL11-09-C12	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-09-C12 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL11-01-F16	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-01-F16 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
4_1920001_1950000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-15-N09	At4g04020 / plastid-lipid associated protein PAP/fibrillin, putative		RAFL07-15-N09 ,At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from [Brassica rapa], fibrillin [Brassica napus] GI:4139097; contains Pfam profile PF04755: PAP_fibrillin
4_7500001_7800000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	3	4511	0.009519084	0.028557254	3
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
	Cluster:5-1				2	280	3	4378	0.0322657	0.0967971	3
		RAFL04-18-L17	At4g15010 / mitochondrial carrier protein family		RAFL04-18-L17 ,At4g15010 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein
		RAFL07-08-H17	At4g15430 / ERD4 protein-related		At4g15430 ,RAFL07-08-H17 early-responsive to dehydration protein-related / ERD protein-related similar to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
	Cluster:3-2				1	36	4	4622	0.039065886	0.11719766	3
		RAFL05-16-L21	At4g15210 / glycosyl hydrolase family 14 (beta-amylase)		At4g15210 ,RAFL05-16-L21 beta-amylase (BMY1) / 1,4-alpha-D-glucan maltohydrolase identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) SP:P25853 [Arabidopsis thaliana]
3_15660001_15690000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-10-C01	At3g43800 / glutathione transferase, putative		At3g43800 ,RAFL04-10-C01 glutathione S-transferase, putative glutathione transferase, papaya, PIR:T09781
3_6000001_6300000					A	B	C	D	P	P'	N
	Cluster:10-2				3	106	17	4537	0.010602768	0.14843874	14
		RAFL08-13-J12	At3g17800 / expressed protein		At3g17800 ,RAFL08-13-J12 expressed protein
		RAFL05-05-N22	At3g17810 / dehydrogenase -related		RAFL05-05-N22 ,At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase
		RAFL05-03-M03	At3g18035 / expressed protein		At3g18035 ,RAFL05-03-M03 histone H1/H5 family protein contains Pfam domain, PF00538: linker histone H1 and H5 family;similar to HMG I/Y like protein (GI:15706274) [Glycine max];similar to HMR1 protein (GI:4218141) [Antirrhinum majus]; similar to high mobility group protein (GI:1483173) [Canavalia gladiata]
1_1500001_1800000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	5	4562	0.008235214	0.049411286	6
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	Cluster:10-0				1	23	6	4633	0.035499245	0.21299548	6
		RAFL06-10-C16	At1g05340 / expressed protein		RAFL06-10-C16 ,At1g05340 expressed protein
1_11520001_11550000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
5_22500001_22800000					A	B	C	D	P	P'	N
	Cluster:4-2				3	132	10	4518	0.005485695	0.038399864	7
		RAFL04-13-A16	At5g56600 / profilin 5		At5g56600 ,RAFL04-13-A16 profilin 5 (PRO5) (PRF3) identical to SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
		RAFL05-09-E07	At5g57030 / lycopene epsilon cyclase		RAFL05-09-E07 ,At5g57030 lycopene epsilon cyclase identical to lycopene epsilon cyclase [GI:1399181]
		RAFL04-18-L19	At5g56670 / 40S ribosomal protein S30 (RPS30C)		RAFL04-18-L19 ,At5g56670 40S ribosomal protein S30 (RPS30C)
	Cluster:4-1				4	306	9	4344	0.008475307	0.059327148	7
		RAFL11-03-L09	At5g56350 / pyruvate kinase, putative		RAFL11-03-L09 ,At5g56350 pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Nicotiana tabacum] SWISS-PROT:Q42954
		RAFL07-08-B13	At5g56290 / peroxisomal targeting signal type 1 receptor (PEX5)		RAFL07-08-B13 ,At5g56290 peroxisomal targeting signal type 1 receptor (PEX5) identical to GI:3603353; contains Pfam profile PF00515 TPR Domain
		RAFL05-18-E13	At5g57020 / N-myristoyl transferase		RAFL05-18-E13 ,At5g57020 myristoyl-CoA:protein N-myristoyltransferase 1 (NMT1) identical to N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana] GI:7339834
		RAFL11-02-F18	At5g56460 / protein kinase, putative		At5g56460 ,RAFL11-02-F18 protein kinase, putative contains protein kinase domain, Pfam:PF00069
	Cluster:8-0				2	107	11	4543	0.035702586	0.2499181	7
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
		RAFL07-17-B18	At5g56750 / Ndr family		RAFL07-17-B18 ,At5g56750 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus}; contains Pfam profile PF03096: Ndr family
4_8610001_8640000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL07-11-B03	At4g17230 / scarecrow-like transcription factor 13 (SCL13)		RAFL07-11-B03 ,At4g17230 scarecrow-like transcription factor 13 (SCL13)
3_19170001_19200000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-16-C19	At3g51730 / expressed protein		RAFL06-16-C19 ,At3g51730 saposin B domain-containing protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
1_25290001_25320000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-10-A12	At1g68440 / expressed protein		RAFL09-10-A12 ,At1g68440 expressed protein
5_7590001_7620000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-J09	At5g22860 / prolylcarboxypeptidase-related protein		At5g22860 ,RAFL05-07-J09 serine carboxypeptidase S28 family protein contains Pfam profile: PF05577 serine carboxypeptidase S28
5_26520001_26550000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-15-B18	At5g67250 / SKP1 interacting partner 2 (SKIP2)		RAFL05-15-B18 ,At5g67250 SKP1 interacting partner 2 (SKIP2) identical to SKP1 interacting partner 2 GI:10716949 from [Arabidopsis thaliana]
3_4500001_4530000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-10-F19	At3g13750 / glycosyl hydrolase family 35 (beta-galactosidase)		At3g13750 ,RAFL04-10-F19 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor SP:P48980 from [Lycopersicon esculentum]
5_3300001_3600000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	11	4543	0.035702586	0.32132328	9
		RAFL09-07-A12	At5g10930 / CBL-interacting protein kinase 5		RAFL09-07-A12 ,At5g10930 CBL-interacting protein kinase 5 (CIPK5) identical to CBL-interacting protein kinase 5 GP|9280632|gb|AAF86504 [Arabidopsis thaliana]
		RAFL09-06-K06	At5g10730 / expressed protein		RAFL09-06-K06 ,At5g10730 expressed protein
3_5670001_5700000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-09-O15	At3g16720 / RING zinc finger protein -related		At3g16720 ,RAFL06-09-O15 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
3_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL06-13-E03	At3g44300 / nitrilase 2		RAFL06-13-E03 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
		RAFL08-10-H06	At3g44300 / nitrilase 2		RAFL08-10-H06 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
2_8460001_8490000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL04-09-E04	At2g19800 / expressed protein		RAFL04-09-E04 ,At2g19800 expressed protein similar to myo-inositol oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
		RAFL05-18-M20	At2g19730 / 60S ribosomal protein L28 (RPL28A)		At2g19730 ,RAFL05-18-M20 60S ribosomal protein L28 (RPL28A)
1_10440001_10470000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	2	4511	0.00591059	0.017731769	3
		RAFL07-10-G10	At1g29880 / glycyl tRNA synthetase -related		RAFL07-10-G10 ,At1g29880 glycyl-tRNA synthetase / glycine--tRNA ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis thaliana}
		RAFL09-12-G17	At1g29900 / carbamoylphosphate synthetase -related		RAFL09-12-G17 ,At1g29900 carbamoyl-phosphate synthase family protein similar to carbamoylphosphate synthetase GI:6552726 from [Medicago sativa]; contains Pfam profiles PF02786: Carbamoyl-phosphate synthase L chain ATP binding domain, PF00289: Carbamoyl-phosphate synthase L chain N-terminal domain, PF02787: Carbamoyl-phosphate synthetase large chain oligomerisation domain
3_4050001_4080000					A	B	C	D	P	P'	N
	Cluster:0-1				4	102	1	4556	1.2403926E-6	2.4807853E-6	2
		RAFL07-16-P05	At3g12780 / phosphoglycerate kinase -related		RAFL07-16-P05 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-15-L04	At3g12780 / phosphoglycerate kinase -related		RAFL09-15-L04 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-14-L16	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL07-14-L16 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-18-L22	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL09-18-L22 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
5_3060001_3090000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-E04	At5g09900 / 26S proteasome regulatory subunit (RPN5), putative		At5g09900 ,RAFL05-08-E04 26S proteasome regulatory subunit, putative (RPN5) p55 protein-like
2_18000001_18300000					A	B	C	D	P	P'	N
	Cluster:6-1				5	310	15	4333	0.009084601	0.09084601	10
		RAFL09-13-A13	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL09-13-A13 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL05-11-L05	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL05-11-L05 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL09-18-M22	At2g43790 / mitogen-activated protein kinase (MAPK), putative (MPK6)		At2g43790 ,RAFL09-18-M22 mitogen-activated protein kinase, putative / MAPK, putative (MPK6) identical to mitogen-activated protein kinase homolog 6 (AtMPK6)[Arabidopsis thaliana] SWISS-PROT:Q39026; PMID:12119167
		RAFL05-05-A23	At2g43780 / expressed protein		RAFL05-05-A23 ,At2g43780 expressed protein
		RAFL04-17-O24	At2g44350 / citrate synthase		RAFL04-17-O24 ,At2g44350 citrate synthase, mitochondrial, putative strong similarity to SP|P20115 Citrate synthase, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF00285: Citrate synthase
	Cluster:4-0				4	236	16	4407	0.017271759	0.17271759	10
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-09-I23	At2g44090 / expressed protein		At2g44090 ,RAFL08-09-I23 expressed protein
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
5_15120001_15150000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-15-O16	At5g38480 / 14-3-3 protein GF14 psi (grf3/RCI1)		RAFL04-15-O16 ,At5g38480 14-3-3 protein GF14 psi (GRF3) (RCI1) identical to 14-3-3 protein GF14 psi GI:1168200, SP:P42644
1_1_3000000					A	B	C	D	P	P'	N
	Cluster:9-1				9	87	161	4406	0.00782445	0.2503824	32
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
1_23400001_23700000					A	B	C	D	P	P'	N
	Cluster:9-1				3	93	11	4556	0.0026107915	0.01827554	7
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
	Cluster:1-0				3	146	11	4503	0.008982478	0.06287734	7
		RAFL07-09-J02	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-09-J02 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL07-18-L09	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-18-L09 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL06-08-F10	At1g64510 / plastid ribosomal protein S6 -related		At1g64510 ,RAFL06-08-F10 ribosomal protein S6 family protein similar to plastid ribosomal protein S6 precursor GB:AAF64311 GI:7582401 from [Spinacia oleracea]
	Cluster:7-0				3	244	11	4405	0.034623235	0.24236265	7
		RAFL06-13-G03	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL06-13-G03 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
		RAFL06-16-A16	At1g64040 / phosphoprotein phosphatase-type 1 catalytic subunit		RAFL06-16-A16 ,At1g64040 serine/threonine protein phosphatase PP1 isozyme 3 (TOPP3) / phosphoprotein phosphatase 1 identical to SP|P48483 Serine/threonine protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GB:AAA32838 GI:166799 from [Arabidopsis thaliana]
		RAFL05-04-D08	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL05-04-D08 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
2_15690001_15720000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-13-O04	At2g37550 / arabidopsis pde1 suppressor 1 protein (Asp1)		At2g37550 ,RAFL04-13-O04 arabidopsis pde1 suppressor 1 protein (ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1) from GI:4519792 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP)
2_18180001_18210000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	2	4346	0.024916494	0.074749485	3
		RAFL09-13-A13	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL09-13-A13 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL05-11-L05	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL05-11-L05 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
4_9930001_9960000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-16-G16	At4g20360 / elongation factor Tu (EF-Tu)		At4g20360 ,RAFL06-16-G16 elongation factor Tu / EF-Tu (TUFA) identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
4_15030001_15060000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-07-A06	At4g33360 / terpene cyclase/mutase-related		RAFL05-07-A06 ,At4g33360 terpene cyclase/mutase-related low similarity to squalene-hopene cyclase from Zymomonas mobilis [SP|P33990]
2_11490001_11520000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-15-N17	At2g27050 / ethylene-insensitive3-related1 (EIL1)		At2g27050 ,RAFL04-15-N17 ethylene-insensitive3-like1 (EIL1) identical to ethylene-insensitive3-like1 GI:2224927 from [Arabidopsis thaliana]
3_2190001_2220000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-19-N09	At3g07010 / polysaccharide lyase family 1 (pectate lyase)		At3g07010 ,RAFL04-19-N09 pectate lyase family protein similar to pectate lyase GP:14531296 from [Fragaria x ananassa]
5_4200001_4500000					A	B	C	D	P	P'	N
	Cluster:10-2				3	106	16	4538	0.009166159	0.100827746	11
		RAFL09-06-F02	At5g13760 / expressed protein		RAFL09-06-F02 ,At5g13760 expressed protein similar to unknown protein (gb AAF63775.1)
		RAFL04-09-C09	At5g13750 / transporter-related protein		At5g13750 ,RAFL04-09-C09 transporter-related
		RAFL06-09-O18	At5g13750 / transporter-related protein		At5g13750 ,RAFL06-09-O18 transporter-related
	Cluster:6-1				4	311	15	4333	0.035288595	0.38817453	11
		RAFL07-09-C22	At5g13420 / transaldolase - like protein		RAFL07-09-C22 ,At5g13420 transaldolase, putative similar to transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
		RAFL05-11-L11	At5g13440 / ubiquinol--cytochrome c reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13440 ,RAFL05-11-L11 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
		RAFL05-09-D06	At5g13490 / mitochondrial ADP,ATP carrier protein 2		At5g13490 ,RAFL05-09-D06 ADP, ATP carrier protein 2, mitochondrial / ADP/ATP translocase 2 / adenine nucleotide translocator 2 (ANT2) identical to SWISS-PROT:P40941 ADP,ATP carrier protein 2, mitochondrial precursor (Adenine nucleotide translocator 2) [Arabidopsis thaliana]
		RAFL02-02-L02	At5g13430 / ubiquinol--cytochrome C reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13430 ,RAFL02-02-L02 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]; non-consensus AT acceptor splice site at exon 2
3_2130001_2160000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-09-D22	At3g06780 / glycine-rich protein		At3g06780 ,RAFL06-09-D22 glycine-rich protein
3_21270001_21300000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
5_26670001_26700000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-O05	At5g67600 / expressed protein		At5g67600 ,RAFL05-07-O05 expressed protein
1_2160001_2190000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	2	4565	0.002449967	0.007349901	3
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
2_90001_120000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-17-F02	At2g01140 / fructose-bisphosphate aldolase, putative		RAFL04-17-F02 ,At2g01140 fructose-bisphosphate aldolase, putative similar to plastidic aldolase NPALDP1 from Nicotiana paniculata [GI:4827251]; contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-I
5_23760001_23790000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL08-08-B13	At5g59730 / exocyst subunit EXO70 family		RAFL08-08-B13 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
		RAFL09-18-E12	At5g59730 / exocyst subunit EXO70 family		RAFL09-18-E12 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
4_17190001_17220000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-19-J11	At4g39140 / expressed protein		At4g39140 ,RAFL08-19-J11 expressed protein
4_12810001_12840000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-21-B15	At4g27800 / Protein phosphatase 2C PPH1 (PPH1) (PP2C)		RAFL05-21-B15 ,At4g27800 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) identical to SP|P49599|P2C3_ARATH Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis thaliana}; similar to protein phosphatase-2C; PP2C (GI:3643090) [Mesembryanthemum crystallinum]
5_300001_600000					A	B	C	D	P	P'	N
	Cluster:2-0				4	146	5	4508	1.1431223E-4	6.858734E-4	6
		RAFL04-19-O24	At5g02610 / 60S ribosomal protein L35 (RPL35D)		RAFL04-19-O24 ,At5g02610 60S ribosomal protein L35 (RPL35D) ribosomal protein L35- cytosolic, Arabidopsis thaliana, PIR:T00549
		RAFL11-02-P21	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		RAFL11-02-P21 ,At5g02500 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
		RAFL04-17-D18	At5g02030 / homeodomain protein		At5g02030 ,RAFL04-17-D18 homeodomain protein (BELLRINGER) several homeodomain proteins;
		RAFL04-14-A06	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		At5g02500 ,RAFL04-14-A06 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
3_6600001_6900000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	9	4372	0.03202454	0.25619632	8
		RAFL11-01-B05	At3g19515 / expressed protein		RAFL11-01-B05 ,At3g19515 expressed protein
		RAFL05-01-I13	At3g19360 / expressed protein		At3g19360 ,RAFL05-01-I13 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL05-13-I08	At3g19553 / amino acid permease -related		RAFL05-13-I08 ,At3g19553 amino acid permease family protein weak similarity to aspartate/glutamate transporter 1 [Mus musculus] GI:21322754; contains Pfam profile PF00324: Amino acid permease
	Cluster:4-1				3	307	9	4344	0.040857635	0.32686108	8
		RAFL05-16-H07	At3g19760 / eukaryotic translation initiation factor 4A (eIF-4A), putative		At3g19760 ,RAFL05-16-H07 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
		RAFL06-09-F12	At3g19220 / expressed protein		RAFL06-09-F12 ,At3g19220 expressed protein
		RAFL06-11-M09	At3g19640 / expressed protein		At3g19640 ,RAFL06-11-M09 magnesium transporter CorA-like family protein (MRS2-3) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
2_18300001_18330000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-16-D13	At2g44500 / axi 1 protein from Nicotiana tabacum -related		RAFL05-16-D13 ,At2g44500 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'axi 1 protein from Nicotiana tabacum -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
		RAFL05-19-F23	At2g44520 / UbiA prenyltransferase family		At2g44520 ,RAFL05-19-F23 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae}
3_3180001_3210000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL07-13-C20	At3g10300 / calcium-binding EF-hand family protein		At3g10300 ,RAFL07-13-C20 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
4_4110001_4140000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
5_1980001_2010000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL04-20-O21	At5g06530 / ABC transporter family protein		At5g06530 ,RAFL04-20-O21 ABC transporter family protein
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL08-13-M13	At5g06530 / ABC transporter family protein		RAFL08-13-M13 ,At5g06530 ABC transporter family protein
1_8910001_8940000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-11-K13	At1g25440 / CONSTANS B-box zinc finger family protein		At1g25440 ,RAFL06-11-K13 zinc finger (B-box type) family protein similar to zinc finger protein GI:3618318 from [Oryza sativa]
1_18630001_18660000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
2_12810001_12840000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-16-G04	At2g30140 / glycosyltransferase family		RAFL05-16-G04 ,At2g30140 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
1_18180001_18210000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL08-16-K08	At1g50250 / chloroplast FtsH protease		RAFL08-16-K08 ,At1g50250 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell division protein ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) [Arabidopsis thaliana]
1_7080001_7110000					A	B	C	D	P	P'	N
	Cluster:10-1				3	40	2	4618	7.213993E-6	2.1641978E-5	3
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	Cluster:10-0				1	23	4	4635	0.02548178	0.07644533	3
		RAFL09-17-M11	At1g20450 / dehydrin (ERD10)		RAFL09-17-M11 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
5_5700001_5730000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-G06	At5g17380 / 2-hydroxyphytanoyl-CoA lyase-related protein		RAFL05-08-G06 ,At5g17380 pyruvate decarboxylase family protein similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens] GI:6273457; contains InterPro entry IPR000399: Pyruvate decarboxylase
5_17070001_17100000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-12-P15	At5g43260 / expressed protein		At5g43260 ,RAFL04-12-P15 chaperone protein dnaJ-related similar to Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
5_15900001_16200000					A	B	C	D	P	P'	N
	Cluster:6-1				4	311	9	4339	0.008966274	0.080696456	9
		RAFL05-10-P24	At5g40890 / CLC-a chloride channel protein		At5g40890 ,RAFL05-10-P24 chloride channel protein (CLC-a) identical to GI:1742952 (gb|AAC05742.1)
		RAFL06-09-A21	At5g40580 / 20S proteasome beta subunit B (PBB2)		At5g40580 ,RAFL06-09-A21 20S proteasome beta subunit B (PBB2) (PRCFC) identical to 20S proteasome beta subunit PBB2 [Arabidopsis thaliana] GI:3421104, cDNA proteasome subunit prcfc GI:2511575
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
	Cluster:1-1				2	103	11	4547	0.033326875	0.2999419	9
		RAFL05-17-L14	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL05-17-L14 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
		RAFL11-03-K10	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL11-03-K10 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
2_9060001_9090000					A	B	C	D	P	P'	N
	Cluster:0-1				6	100	2	4555	3.2338237E-9	9.701471E-9	3
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
5_20250001_20280000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-09-E09	At5g50460 / protein translocation complex Sec61 gamma chain (pir |T05513)		RAFL05-09-E09 ,At5g50460 protein transport protein SEC61 gamma subunit, putative similar to Swiss-Prot:Q19967 protein transport protein SEC61 gamma subunit [Caenorhabditis elegans]
2_19440001_19470000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-14-B18	At2g47510 / fumarase -related		At2g47510 ,RAFL07-14-B18 fumarate hydratase, putative / fumarase, putative similar to SP|P55250 Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase) {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
4_12480001_12510000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	2	4396	0.017887078	0.053661235	3
		RAFL05-05-I21	At4g26940 / galactosyltransferase family		At4g26940 ,RAFL05-05-I21 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase
		RAFL05-18-M05	At4g26910 / dihydrolipoamide succinyltransferase -related		At4g26910 ,RAFL05-18-M05 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme
5_6570001_6600000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	3	4345	0.039689664	0.15875866	4
		RAFL04-17-L05	At5g19550 / aspartate aminotransferase, cytoplasmic isozyme 1 (transaminase A/Asp2)		At5g19550 ,RAFL04-17-L05 aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2) identical to SP|P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
		RAFL11-09-A12	At5g19550 / aspartate aminotransferase, cytoplasmic isozyme 1 (transaminase A/Asp2)		RAFL11-09-A12 ,At5g19550 aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2) identical to SP|P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
1_9720001_9750000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL04-15-P04	At1g27950 / lipid transfer protein - related		At1g27950 ,RAFL04-15-P04 lipid transfer protein-related low similarity to lipid transfer protein Picea abies GI:2627141; contains Pfam profile: PF00234: Protease inhibitor/seed storage/LTP family
4_9780001_9810000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-13-L07	At4g19980 / hypothetical protein		RAFL05-13-L07 ,At4g19980 expressed protein ; expression supported by MPSS
1_20100001_20400000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	9	4548	0.024629358	0.19703487	8
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
3_8430001_8460000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
2_4230001_4260000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	0	4627	5.79606E-5	5.79606E-5	1
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
3_16440001_16470000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL08-12-C18	At3g44990 / xyloglucan endotransglycosylase, putative		At3g44990 ,RAFL08-12-C18 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
3_9480001_9510000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-H06	At3g25920 / 50S ribosomal protein L15, chloroplast precursor (CL15)		At3g25920 ,RAFL04-15-H06 50S ribosomal protein L15, chloroplast (CL15) identical to GB:P25873 from [Arabidopsis thaliana]
5_25500001_25800000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	10	4527	0.040051516	0.44056666	11
		RAFL05-21-E11	At5g64740 / cellulose synthase, catalytic subunit, putative		RAFL05-21-E11 ,At5g64740 cellulose synthase, catalytic subunit, putative similar to gi:2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis thaliana
		RAFL05-03-E09	At5g64860 / glycosyl hydrolase family 77 (4-alpha-glucanotransferase)		At5g64860 ,RAFL05-03-E09 4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]
2_18690001_18720000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-15-M08	At2g45470 / fasciclin-like arabinogalactan-protein (FLA8)		At2g45470 ,RAFL06-15-M08 fasciclin-like arabinogalactan-protein (FLA8)
3_21210001_21240000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-19-O12	At3g57340 / DnaJ protein family		RAFL04-19-O12 ,At3g57340 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus musculus; contains Pfam profile PF00226 DnaJ domain
5_540001_570000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	1	4512	0.003019041	0.006038082	2
		RAFL11-02-P21	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		RAFL11-02-P21 ,At5g02500 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
		RAFL04-14-A06	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		At5g02500 ,RAFL04-14-A06 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
	Cluster:5-0				1	76	2	4584	0.04873567	0.09747134	2
		RAFL09-16-G01	At5g02480 / expressed protein		RAFL09-16-G01 ,At5g02480 expressed protein p
1_22500001_22530000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL05-05-K10	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL05-05-K10 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL08-09-F22	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL08-09-F22 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
5_1_300000					A	B	C	D	P	P'	N
	Cluster:1-2				5	169	11	4478	2.1346682E-4	0.002348135	11
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
	Cluster:9-0				2	30	14	4617	0.0051567336	0.05672407	11
		RAFL08-13-G20	At5g01520 / C3HC4-type zinc finger protein family		At5g01520 ,RAFL08-13-G20 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL09-17-E14	At5g01520 / C3HC4-type zinc finger protein family		RAFL09-17-E14 ,At5g01520 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
2_8820001_8850000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-08-L08	At2g20610 / aminotransferase, putative		At2g20610 ,RAFL07-08-L08 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
4_6900001_7200000					A	B	C	D	P	P'	N
	Cluster:1-2				5	169	11	4478	2.1346682E-4	0.002348135	11
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,RAFL09-11-K06 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
1_29700001_29730000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL06-09-J06	At1g79920 / heat shock protein hsp70, putative		RAFL06-09-J06 ,At1g79920 heat shock protein 70, putative / HSP70, putative contains Pfam profile: PF00012 Heat shock hsp70 proteins; similar to heat-shock proteins GB:CAA94389, GB:AAD55461 [Arabidopsis thaliana]
2_10800001_11100000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	7	4480	0.042826395	0.29978478	7
		RAFL05-09-N19	At2g25850 / poly(A) polymerase -related		At2g25850 ,RAFL05-09-N19 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain; identical to cDNA GI:31747890
		RAFL08-11-P15	At2g25520 / phosphate translocator-related		At2g25520 ,RAFL08-11-P15 phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275
3_8700001_8730000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	1	4347	0.013038642	0.026077284	2
		RAFL05-07-N19	At3g24100 / expressed protein		At3g24100 ,RAFL05-07-N19 four F5 family protein / 4F5 family protein contains Pfam PF04419: 4F5 protein family
		RAFL09-14-J17	At3g24160 / type 1 membrane protein -related		At3g24160 ,RAFL09-14-J17 expressed protein identical to cDNA putative type 1 membrane protein (PMP)GI:4206764
1_2280001_2310000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	3	4498	0.011195023	0.04478009	4
		RAFL05-09-H21	At1g07470 / transcription factor IIA large subunit		RAFL05-09-H21 ,At1g07470 transcription factor IIA large subunit, putative / TFIIA large subunit, putative nearly identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana]; contains Pfam profile: PF03153 transcription factor IIA, alpha/beta subunit
		RAFL08-18-K15	At1g07480 / transcription factor IIA large subunit		At1g07480 ,RAFL08-18-K15 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana]
3_7800001_8100000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	11	4543	0.035702586	0.32132328	9
		RAFL05-07-L13	At3g22370 / alternative oxidase 1a, mitochondrial (AOX1A)		RAFL05-07-L13 ,At3g22370 alternative oxidase 1a, mitochondrial (AOX1A) identical to GB:Q39219 [SP|Q39219] from [Arabidopsis thaliana]
		RAFL04-13-O07	At3g22200 / 4-aminobutyrate aminotransferase (gamma-amino-N-butyrate transaminase/GABA transaminase/beta-alanine--oxoglutarate aminotransferase)		RAFL04-13-O07 ,At3g22200 4-aminobutyrate aminotransferase / gamma-amino-N-butyrate transaminase / GABA transaminase / beta-alanine--oxoglutarate aminotransferase identical to gamma-aminobutyrate transaminase subunit precursor [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435; contains Pfam profile PF00202: aminotransferase, class III; identical to cDNA gamma-aminobutyrate transaminase subunit precursor, nuclear gene for mitochondrial product GI:14030434
3_7890001_7920000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-07-L13	At3g22370 / alternative oxidase 1a, mitochondrial (AOX1A)		RAFL05-07-L13 ,At3g22370 alternative oxidase 1a, mitochondrial (AOX1A) identical to GB:Q39219 [SP|Q39219] from [Arabidopsis thaliana]
1_11970001_12000000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-07-L08	At1g33080 / MATE efflux protein family		RAFL07-07-L08 ,At1g33080 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
3_17700001_17730000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-16-L17	At3g47960 / peptide transporter -related		At3g47960 ,RAFL09-16-L17 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL03-05-E06	At3g48000 / mitochondrial aldehyde dehydrogenase, putative (ALDH)		RAFL03-05-E06 ,At3g48000 aldehyde dehydrogenase (ALDH2) identical to aldehyde dehydrogenase [Arabidopsis thaliana] GI:8574427; similar to mitochondrial aldehyde dehydrogenase [Arabidopsis thaliana] gi|19850249|gb|AAL99612; identical to cDNA aldehyde dehydrogenase AtALDH2a GI:20530140
4_17370001_17400000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	3	4628	0.027177518	0.10871007	4
		RAFL05-01-D05	At4g39670 / expressed protein		At4g39670 ,RAFL05-01-D05 expressed protein
5_9000001_12000000					A	B	C	D	P	P'	N
	Cluster:3-0				5	228	33	4397	0.038967177	0.62347484	16
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL05-18-K01	At5g29000 / expressed protein		At5g29000 ,RAFL05-18-K01 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
		RAFL05-18-H11	At5g27700 / ribosomal protein S21 - like		RAFL05-18-H11 ,At5g27700 40S ribosomal protein S21 (RPS21C) ribosomal protein S21, Zea mays, PIR:T03945
3_7980001_8010000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL08-09-M05	At3g22600 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At3g22600 ,RAFL08-09-M05 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
5_17700001_17730000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-11-I01	At5g44650 / expressed protein		At5g44650 ,RAFL06-11-I01 expressed protein
4_5610001_5640000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL06-13-L06	At4g10840 / kinesin light chain - related		RAFL06-13-L06 ,At4g10840 kinesin light chain-related low similarity to kinesin light chain [Plectonema boryanum] GI:2645229; contains Pfam profile PF00515 TPR Domain
4_16980001_17010000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	3	4596	0.001805879	0.007223516	4
		RAFL08-17-I12	At4g38550 / Phospholipase like protein		RAFL08-17-I12 ,At4g38550 expressed protein
		RAFL09-15-P17	At4g38550 / Phospholipase like protein		At4g38550 ,RAFL09-15-P17 expressed protein
5_25380001_25410000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	5	4518	0.017023228	0.10213937	6
		RAFL06-16-H01	At5g64200 / arginine/serine-rich splicing factor SC35		At5g64200 ,RAFL06-16-H01 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
		RAFL06-11-N06	At5g64200 / arginine/serine-rich splicing factor SC35		RAFL06-11-N06 ,At5g64200 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2_1500001_1530000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-11-E20	At2g04350 / long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase) family		At2g04350 ,RAFL05-11-E20 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) similar to LACS 4 [SP|O35547] from Rattus norvegicus, LACS 4 [SP|O60488] from Homo sapiens; contains Pfam HMM hit: AMP-binding enzymes PF00501
3_2700001_3000000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	11	4419	0.029778728	0.29778728	10
		RAFL07-18-J05	At3g09210 / expressed protein		At3g09210 ,RAFL07-18-J05 KOW domain-containing transcription factor family protein ; est match
		RAFL08-10-G08	At3g09630 / 60S ribosomal protein L4/L1 (RPL4A)		RAFL08-10-G08 ,At3g09630 60S ribosomal protein L4/L1 (RPL4A) strong similarity to 60S ribosomal protein L1 GB:P49691
		RAFL04-15-D01	At3g09200 / 60S acidic ribosomal protein P0 (RPP0B)		At3g09200 ,RAFL04-15-D01 60S acidic ribosomal protein P0 (RPP0B) similar to putative 60S acidic ribosomal protein P0 GB:P50346 [Glycine max]
2_16020001_16050000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-08-B14	At2g38400 / alanine--glyoxylate aminotransferase (beta-alanine-pyruvate aminotransferase/AGT), putative		RAFL05-08-B14 ,At2g38400 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus}; contains Pfam profile PF00202: aminotransferase, class III
3_5790001_5820000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-13-E04	At3g17000 / ubiquitin-conjugating enzyme, putative		RAFL05-13-E04 ,At3g17000 ubiquitin-conjugating enzyme, putative similar to Non-Canonical UBiquitin Conjugating Enzyme 1 (NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus] GI:7363050, [Homo sapiens] GI:7362973; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-11-B18	At3g16990 / seed maturation protein -related		At3g16990 ,RAFL09-11-B18 TENA/THI-4 family protein contains Pfam profile: PF03070 TENA/THI-4 family
2_17190001_17220000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	1	4598	5.5148744E-4	0.0011029749	2
		RAFL06-10-F19	At2g41430 / ERD15 protein		At2g41430 ,RAFL06-10-F19 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
		RAFL02-08-C02	At2g41430 / ERD15 protein		At2g41430 ,RAFL02-08-C02 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
1_870001_900000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-14-F01	At1g03600 / photosystem II protein family		At1g03600 ,RAFL05-14-F01 photosystem II family protein similar to SP:P74367 {Synechocystis sp.}; similar to ESTs emb|Z27038, gb|AA451546, emb|Z29876, gb|T45359 and gb|R90316
2_8040001_8070000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-13-B06	At2g18700 / glycosyltransferase family 20		RAFL05-13-B06 ,At2g18700 glycosyl transferase family 20 protein / trehalose-phosphatase family protein similar to trehalose-6-phosphate synthase SL-TPS/P [Selaginella lepidophylla] GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase
2_120001_150000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	3	4416	0.024550742	0.098202966	4
		RAFL11-06-J19	At2g01250 / 60S ribosomal protein L7 (RPL7B)		At2g01250 ,RAFL11-06-J19 60S ribosomal protein L7 (RPL7B)
		RAFL11-09-C11	At2g01250 / 60S ribosomal protein L7 (RPL7B)		At2g01250 ,RAFL11-09-C11 60S ribosomal protein L7 (RPL7B)
1_3750001_3780000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL07-18-O08	At1g11210 / expressed protein		At1g11210 ,RAFL07-18-O08 expressed protein contains similarity to cotton fiber expressed protein 1 [Gossypium hirsutum] gi|3264828|gb|AAC33276
		RAFL07-09-F22	At1g11260 / glucose transporter		At1g11260 ,RAFL07-09-F22 glucose transporter (STP1) nearly identical to glucose transporter GB:P23586 SP|P23586 from [Arabidopsis thaliana]
1_29130001_29160000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	2	4625	0.022987597	0.06896279	3
		RAFL05-18-K12	At1g78370 / glutathione transferase, putative		RAFL05-18-K12 ,At1g78370 glutathione S-transferase, putative similar to 2,4-D inducible glutathione S-transferase GI:2920666 from [Glycine max]
1_20280001_20310000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL02-09-J03	At1g55450 / expressed protein		At1g55450 ,RAFL02-09-J03 embryo-abundant protein-related similar to embryo-abundant protein GI:1350531 from [Picea glauca]
3_8580001_8610000					A	B	C	D	P	P'	N
	Cluster:3-2				6	31	1	4625	1.1369287E-12	2.2738573E-12	2
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1_8850001_8880000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-18-F07	At1g25260 / expressed protein		RAFL05-18-F07 ,At1g25260 acidic ribosomal protein P0-related contains similarity to 60S acidic ribosomal protein GI:5815233 from [Homo sapiens]
4_7080001_7110000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-10-K05	At4g14130 / xyloglucan endotransglycosylase (XTR7)		RAFL07-10-K05 ,At4g14130 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (XTR7) almost identical to xyloglucan endotransglycosylase-related protein XTR7 GI:1244760 from [Arabidopsis thaliana], one amino acid difference
3_6510001_6540000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-18-I11	At3g18890 / expressed protein		RAFL08-18-I11 ,At3g18890 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364
5_20160001_20190000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-04-K21	At5g50250 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		At5g50250 ,RAFL05-04-K21 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
1_19740001_19770000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL05-16-I04	At1g54000 / myrosinase-associated protein, putative		At1g54000 ,RAFL05-16-I04 myrosinase-associated protein, putative similar to myrosinase-associated proteins GI:1769968, GI:1769970, GI:1216391, GI:1216389 from [Brassica napus]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; contains 1 predicted transmembrane domain
		RAFL08-17-C21	At1g54010 / myrosinase-associated protein, putative		At1g54010 ,RAFL08-17-C21 myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769969 from [Brassica napus]; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif
3_21300001_21330000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-06-N19	At3g57540 / expressed protein		RAFL09-06-N19 ,At3g57540 remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region
3_20910001_20940000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-10-F17	At3g56400 / WRKY family transcription factor		RAFL04-10-F17 ,At3g56400 WRKY family transcription factor DNA-binding protein 4 WRKY4 - Nicotiana tabacum, EMBL:AF193771
5_20400001_20700000					A	B	C	D	P	P'	N
	Cluster:4-1				4	306	9	4344	0.008475307	0.06780246	8
		RAFL04-16-C15	At5g51400 / expressed protein		At5g51400 ,RAFL04-16-C15 expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614
		RAFL05-07-K24	At5g51020 / expressed protein		At5g51020 ,RAFL05-07-K24 expressed protein similar to unknown protein (pir||S76207)
		RAFL05-07-C06	At5g50900 / expressed protein		At5g50900 ,RAFL05-07-C06 armadillo/beta-catenin repeat family protein armadillo/beta-catenin-like repeats, Pfam:PF00514
		RAFL05-19-C14	At5g51120 / polyadenylate-binding protein (poly(A)-binding protein), putative		RAFL05-19-C14 ,At5g51120 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	Cluster:9-1				2	94	11	4556	0.028228948	0.22583158	8
		RAFL09-15-D15	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL09-15-D15 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
		RAFL05-05-I08	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL05-05-I08 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
2_8400001_8700000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	12	4407	0.040360164	0.40360165	10
		RAFL04-09-E04	At2g19800 / expressed protein		RAFL04-09-E04 ,At2g19800 expressed protein similar to myo-inositol oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
		RAFL05-18-M20	At2g19730 / 60S ribosomal protein L28 (RPL28A)		At2g19730 ,RAFL05-18-M20 60S ribosomal protein L28 (RPL28A)
		RAFL05-20-L11	At2g20020 / expressed protein		At2g20020 ,RAFL05-20-L11 expressed protein
1_24660001_24690000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	0	4513	0.0010281106	0.0010281106	1
		RAFL05-15-L20	At1g67030 / zinc finger protein (ZFP6)		At1g67030 ,RAFL05-15-L20 zinc finger (C2H2 type) family protein (ZFP6) identical to zinc finger protein, ZFP6 gi|790683|gb|AAA87302; contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL09-07-D23	At1g67050 / expressed protein		RAFL09-07-D23 ,At1g67050 expressed protein
3_21390001_21420000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-16-D03	At3g57790 / polygalacturonase, putative		RAFL04-16-D03 ,At3g57790 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to SP|P15922 Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) {Erwinia chrysanthemi}; contains PF00295: Glycosyl hydrolases family 28
5_6690001_6720000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL09-09-M04	At5g19860 / expressed protein		RAFL09-09-M04 ,At5g19860 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
		RAFL06-07-G22	At5g19860 / expressed protein		RAFL06-07-G22 ,At5g19860 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
5_4110001_4140000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL08-17-F04	At5g13010 / RNA helicase, putative		At5g13010 ,RAFL08-17-F04 RNA helicase, putative similar to DEAH-box RNA helicase [Chlamydomonas reinhardtii] GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
5_26010001_26040000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL07-10-I24	At5g65720 / NifS-related aminotranfserase		At5g65720 ,RAFL07-10-I24 cysteine desulfurase, mitochondrial (NIFS) identical to Cysteine desulfurase, mitochondrial precursor (SP:O49543) {Arabidopsis thaliana}; identical to cDNA GI:12656131; contains Pfam profile PF00266: aminotransferase, class V
1_23550001_23580000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL07-09-J02	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-09-J02 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL07-18-L09	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-18-L09 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
	Cluster:2-2				1	52	2	4608	0.033719275	0.06743855	2
		RAFL09-14-M16	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL09-14-M16 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
3_6930001_6960000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	2	4445	0.012046366	0.036139097	3
		RAFL04-09-P17	At3g19960 / myosin		RAFL04-09-P17 ,At3g19960 myosin (ATM) nearly identical to myosin [Arabidopsis thaliana] GI:6491702; similar to myosin GI:6491702 from [Arabidopsis thaliana] ;contains Pfam profiles: PF00063: myosin head (motor domain), PF00612: IQ calmodulin-binding motif; identical to cDNA myosin (ATM) GI:297068
		RAFL07-11-N11	At3g19930 / sugar transport protein STP4		RAFL07-11-N11 ,At3g19930 sugar transport protein (STP4) identical to GB:S25009 GI:16524 from [Arabidopsis thaliana]
5_18300001_18330000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-G05	At5g45900 / autophagy 7 (APG7)		RAFL05-08-G05 ,At5g45900 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family
2_16920001_16950000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-09-L18	At2g40690 / glycerol-3-phosphate dehydrogenase		At2g40690 ,RAFL07-09-L18 NAD-dependent glycerol-3-phosphate dehydrogenase family protein low similarity to SP|Q26756 Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains Pfam profile PF01210: NAD-dependent glycerol-3-phosphate dehydrogenase
1_15630001_15660000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	Cluster:0-0				1	35	3	4624	0.030535331	0.09160599	3
		RAFL05-16-M03	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-16-M03 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
3_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:6-1				4	311	7	4341	0.0046094977	0.027656987	6
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-10-H13	At3g46220 / expressed protein		RAFL05-10-H13 ,At3g46220 expressed protein
	Cluster:9-2				2	65	9	4587	0.010289272	0.061735634	6
		RAFL04-09-M06	At3g45970 / expansin protein family (EXPL1)		RAFL04-09-M06 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL06-12-F13	At3g45970 / expansin protein family (EXPL1)		RAFL06-12-F13 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
	Cluster:6-0				2	138	9	4514	0.04121896	0.24731375	6
		RAFL11-05-E17	At3g46000 / actin depolymerizing factor 2 (ADF2)		RAFL11-05-E17 ,At3g46000 actin-depolymerizing factor, putative (ADF2) strong similarity to SP|Q9ZSK3 Actin-depolymerizing factor 4 (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam profile PF00241: Cofilin/tropomyosin-type actin-binding protein
		RAFL08-18-K01	At3g45770 / oxidoreductase, zinc-binding dehydrogenase family		At3g45770 ,RAFL08-18-K01 oxidoreductase, zinc-binding dehydrogenase family protein similar to nuclear receptor binding factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724; contains Pfam zinc-binding dehydrogenase domain PF00107
1_7140001_7170000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-13-G24	At1g20620 / catalase 3		RAFL09-13-G24 ,At1g20620 catalase 3 (SEN2) almost identical to catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis thaliana]; identical to catalase 3 (SEN2) mRNA, partial cds GI:3158369
1_25680001_25710000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-N07	At1g69295 / expressed protein		At1g69295 ,RAFL05-07-N07 beta-1,3-glucanase-related low similarity to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] GI:11071974
1_15300001_15600000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O07	At1g42550 / expressed protein		At1g42550 ,RAFL06-08-O07 expressed protein
3_16380001_16410000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-19-O23	At3g44880 / Rieske (2Fe-2S) domain-containing protein		RAFL05-19-O23 ,At3g44880 Rieske [2Fe-2S] domain-containing protein similar to lethal leaf-spot 1 from Zea mays [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S] domain
2_1050001_1080000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-01-A17	At2g03480 / dehydration-induced protein-related		RAFL05-01-A17 ,At2g03480 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase; non-consensus GA donor site at exon 4
3_18570001_18600000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-H15	At3g50110 / tyrosine phosphatase -related		At3g50110 ,RAFL08-11-H15 phosphatase-related similar to PTEN1 GI:5566292 from [Drosophila melanogaster]; contains prosite evidence: PS00383: Tyrosine specific protein phosphatases active site
2_16410001_16440000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-02-D04	At2g39460 / 60S ribosomal protein L23A (RPL23aA)		RAFL05-02-D04 ,At2g39460 60S ribosomal protein L23A (RPL23aA) identical to GB:AF034694
1_22200001_22500000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	4	4394	0.041455213	0.20727606	5
		RAFL05-08-M04	At1g61740 / expressed protein		RAFL05-08-M04 ,At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI:4079631
		RAFL04-10-F21	At1g61250 / secretory carrier membrane protein		At1g61250 ,RAFL04-10-F21 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family
4_8370001_8400000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-09-K15	At4g16760 / acyl-CoA oxidase like protein		RAFL09-09-K15 ,At4g16760 acyl-CoA oxidase (ACX1) identical to acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
5_23820001_23850000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	3	4416	0.024550742	0.098202966	4
		RAFL04-10-F11	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL04-10-F11 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL07-08-L21	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL07-08-L21 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
4_14190001_14220000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-10-K16	At4g31420 / zinc finger protein -related		RAFL04-10-K16 ,At4g31420 zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type
2_12720001_12750000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-J07	At2g29970 / expressed protein		RAFL04-15-J07 ,At2g29970 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689
5_10800001_10830000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-15-P16	At5g28840 / NAD-dependent epimerase/dehydratase family		At5g28840 ,RAFL04-15-P16 NAD-dependent epimerase/dehydratase family protein similar to sugar epimerase BlmG from Streptomyces verticillus GI:9937230; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family
5_24510001_24540000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-14-E20	At5g61780 / 100 kDa coactivator - like protein		At5g61780 ,RAFL07-14-E20 tudor domain-containing protein / nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: Staphylococcal nuclease homologue
5_19110001_19140000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-A02	At5g47930 / ribosomal protein S27		RAFL05-07-A02 ,At5g47930 40S ribosomal protein S27 (RPS27D)
1_90001_120000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-14-L09	At1g01240 / expressed protein		At1g01240 ,RAFL08-14-L09 expressed protein
1_780001_810000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
4_15360001_15390000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-17-H20	At4g34290 / expressed protein		At4g34290 ,RAFL04-17-H20 SWIB complex BAF60b domain-containing protein contains Pfam profile PF02201: BAF60b domain of the SWIB complex
3_23370001_23400000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-F15	At3g63270 / expressed protein		RAFL05-07-F15 ,At3g63270 expressed protein
2_14970001_15000000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-17-N14	At2g35760 / expressed integral membrane protein common family		RAFL05-17-N14 ,At2g35760 integral membrane family protein contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588)
1_11400001_11700000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	7	4550	0.016604977	0.09962986	6
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
	Cluster:6-0				2	138	7	4516	0.028056826	0.16834095	6
		RAFL07-15-L13	At1g32050 / secretory carrier membrane protein -related		At1g32050 ,RAFL07-15-L13 secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family
		RAFL09-06-F07	At1g31910 / expressed protein		RAFL09-06-F07 ,At1g31910 GHMP kinase family protein contains TIGRFAM profile TIGR01219: phosphomevalonate kinase; contains Pfam PF00288: GHMP kinases putative ATP-binding protein domain; similar to Phosphomevalonate kinase (EC 2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
2_14460001_14490000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	6	4424	0.008266786	0.041333932	5
		RAFL09-07-K24	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL09-07-K24 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL06-08-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL06-08-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL11-04-H04	At2g34480 / 60S ribosomal protein L18A (RPL18aB)		At2g34480 ,RAFL11-04-H04 60S ribosomal protein L18A (RPL18aB)
	Cluster:4-2				2	133	7	4521	0.02621311	0.13106555	5
		RAFL02-10-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL02-10-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL02-08-C17	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL02-08-C17 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
2_8610001_8640000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL06-16-K21	At2g20120 / expressed protein		RAFL06-16-K21 ,At2g20120 expressed protein contains Pfam domain, PF04367: Protein of unknown function (DUF502); identical to cDNA putative membrane protein COV (COV) GI:30059123
3_8400001_8430000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-13-I08	At3g23490 / cyanate lyase (CYN)		RAFL06-13-I08 ,At3g23490 cyanate lyase family contains Pfam profile: PF02560 cyanate lyase C-terminal domain
4_14970001_15000000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL04-09-N03	At4g33220 / pectinesterase family		RAFL04-09-N03 ,At4g33220 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
1_20370001_20400000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
1_17430001_17460000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-11-A01	At1g48350 / ribosomal protein L18p family		At1g48350 ,RAFL06-11-A01 ribosomal protein L18 family protein similar to ribosomal protein L18 GI:3980238 from [Thermotoga maritima]
3_4770001_4800000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-12-M04	At3g14310 / pectin methylesterase -related		At3g14310 ,RAFL09-12-M04 pectinesterase family protein contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor ;similar to pectin methylesterase GB:Q42534 from [Arabidopsis thaliana]
1_1260001_1290000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-18-N07	At1g04620 / expressed protein		RAFL04-18-N07 ,At1g04620 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family contains Pfam PF04432: Coenzyme F420 hydrogenase/dehydrogenase, beta domain; similar to Coenzyme F420 hydrogenase beta subunit (SP:Q00391) {Methanobacterium thermoautotrophicum}
3_21420001_21450000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-01-B07	At3g57880 / C2 domain-containing protein		At3g57880 ,RAFL05-01-B07 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain
5_20700001_21000000					A	B	C	D	P	P'	N
	Cluster:10-0				3	21	10	4629	3.3136865E-5	2.6509492E-4	8
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
3_3750001_3780000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	2	4428	0.013951966	0.027903931	2
		RAFL07-11-B07	At3g11910 / ubiquitin carboxyl-terminal hydrolase -related		RAFL07-11-B07 ,At3g11910 ubiquitin-specific protease, putative strong similarity to ubiquitin-specific protease 12 (UBP12) [Arabidopsis thaliana] GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain
		RAFL06-07-B02	At3g11940 / 40S ribosomal protein S5 (RPS5B)		At3g11940 ,RAFL06-07-B02 40S ribosomal protein S5 (RPS5B) similar to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from [Arabidopsis thaliana]
	Cluster:6-1				2	313	2	4346	0.024916494	0.04983299	2
		RAFL05-17-B11	At3g11930 / ethylene-responsive protein -related		At3g11930 ,RAFL05-17-B11 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
		RAFL02-07-E18	At3g11930 / ethylene-responsive protein -related		RAFL02-07-E18 ,At3g11930 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
1_25980001_26010000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL08-18-E07	At1g69980 / expressed protein		At1g69980 ,RAFL08-18-E07 expressed protein
5_25650001_25680000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-06-I01	At5g64940 / ABC transporter-related		RAFL09-06-I01 ,At5g64940 ABC1 family protein contains Pfam domain, PF03109: ABC1 family
1_8700001_9000000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	4	4349	0.00833001	0.04165005	5
		RAFL03-02-D01	At1g25550 / expressed protein		At1g25550 ,RAFL03-02-D01 myb family transcription factor contains Pfam domain, PF00249: Myb-like DNA-binding domain
		RAFL07-12-O20	At1g25490 / serine/threonine protein phosphatase 2A, 65 KDa regulatory subunit A		At1g25490 ,RAFL07-12-O20 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit A (RCN1) identical to phosphoprotein phosphatase 2A, regulatory subunit A GI:1262171 from [Arabidopsis thaliana]
		RAFL08-18-G05	At1g25350 / glutamine-tRNA ligase (glutaminyl-tRNA synthetase) (GlnRS), putative		RAFL08-18-G05 ,At1g25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative similar to tRNA-glutamine synthetase GI:2995454 from [Lupinus luteus]
3_10440001_10470000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-14-I22	At3g28050 / nodulin MtN21 family protein		At3g28050 ,RAFL09-14-I22 nodulin MtN21 family protein similar to MtN21 [Medicago truncatula] GI:2598575; contains Pfam profile PF00892: Integral membrane protein
2_15030001_15060000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-09-C20	At2g35940 / homeodomain protein		At2g35940 ,RAFL11-09-C20 homeodomain-containing protein contains 'Homeobox' domain signature, Prosite:PS00027
1_2040001_2070000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	2	4346	0.024916494	0.074749485	3
		RAFL04-15-I20	At1g06700 / serine/threonine protein kinase, putative		At1g06700 ,RAFL04-15-I20 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
		RAFL05-18-C05	At1g06690 / aldo/keto reductase family		At1g06690 ,RAFL05-18-C05 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
1_23430001_23460000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
5_14400001_14700000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	2	4351	0.0026315711	0.007894713	3
		RAFL11-03-L10	At5g37260 / myb family transcription factor		RAFL11-03-L10 ,At5g37260 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL06-08-D19	At5g37510 / NADH dehydrogenase (ubiquinone), mitochondrial, putative		At5g37510 ,RAFL06-08-D19 NADH-ubiquinone dehydrogenase, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum [SP|Q43644]
		RAFL09-09-P07	At5g37360 / expressed protein		At5g37360 ,RAFL09-09-P07 expressed protein
4_8790001_8820000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-09-G07	At4g17650 / expressed protein		At4g17650 ,RAFL05-09-G07 aromatic-rich family protein contains Pfam PF03654: Aromatic-Rich Protein Family
3_16530001_16560000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-06-O22	At3g45140 / lipoxygenase (LOX2)		RAFL09-06-O22 ,At3g45140 lipoxygenase (LOX2) identical to SP|P38418
4_10140001_10170000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-19-F02	At4g20890 / tubulin beta-9 chain (TUB9)		RAFL04-19-F02 ,At4g20890 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana}
3_5310001_5340000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-17-F06	At3g15690 / acetyl-CoA carboxylase biotin-containing subunit -related		At3g15690 ,RAFL04-17-F06 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related contains weak similarity to Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplast precursor (BCCP) (Swiss-Prot:Q42533) [Arabidopsis thaliana]
4_1380001_1410000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-16-M09	At4g03200 / expressed protein		RAFL08-16-M09 ,At4g03200 expressed protein contains Pfam PF03190: Protein of unknown function, DUF255
1_24180001_24210000					A	B	C	D	P	P'	N
	Cluster:2-0				3	147	1	4512	1.2749233E-4	2.5498465E-4	2
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
	Cluster:2-2				1	52	3	4607	0.044709165	0.08941833	2
		RAFL04-16-J21	At1g65960 / glutamate decarboxylase 2 (GAD 2)		At1g65960 ,RAFL04-16-J21 glutamate decarboxylase 2 (GAD 2) similar to glutamate decarboxylase (gad) GI:294111 from [Petunia hybrida]
2_10140001_10170000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-15-F12	At2g24020 / expressed protein		RAFL05-15-F12 ,At2g24020 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718
1_23580001_23610000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	1	4415	0.008091402	0.016182804	2
		RAFL06-13-G03	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL06-13-G03 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
		RAFL05-04-D08	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL05-04-D08 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
3_5520001_5550000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-18-C18	At3g16340 / ABC transporter family protein		At3g16340 ,RAFL05-18-C18 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza]; contains Pfam profile: PF00005 ABC transporter
1_9180001_9210000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL03-05-O04	At1g26630 / initiation factor 5A-4 -related		At1g26630 ,RAFL03-05-O04 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similariy to SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
1_6660001_6690000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-03-E11	At1g19350 / expressed protein		At1g19350 ,RAFL05-03-E11 brassinosteroid signalling positive regulator, putative similar to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490
3_9210001_9240000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-13-N03	At3g25470 / hemolysin -related		At3g25470 ,RAFL05-13-N03 bacterial hemolysin-related similar to hemolysine GB:AAD36643 from [Thermotoga maritima], contains Pfam profile: PF01479 S4 domain
4_12300001_12600000					A	B	C	D	P	P'	N
	Cluster:7-1				4	261	11	4387	0.00845582	0.101469845	12
		RAFL05-05-I21	At4g26940 / galactosyltransferase family		At4g26940 ,RAFL05-05-I21 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase
		RAFL05-09-B22	At4g27000 / RNA binding protein 45 (RBP45), putative		RAFL05-09-B22 ,At4g27000 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188
		RAFL05-18-M05	At4g26910 / dihydrolipoamide succinyltransferase -related		At4g26910 ,RAFL05-18-M05 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme
		RAFL04-12-O04	At4g27120 / expressed protein		At4g27120 ,RAFL04-12-O04 expressed protein
1_570001_600000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
3_20520001_20550000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	2	4624	0.02362106	0.07086318	3
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
2_14250001_14280000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-19-N24	At2g33850 / expressed protein		At2g33850 ,RAFL04-19-N24 expressed protein contains 1 transmembrane domain; similar to Protein E6 (Swiss-Prot:Q01197) [Gossypium hirsutum]
3_4470001_4500000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-08-G19	At3g13672 / seven in absentia (sina) protein family		At3g13672 ,RAFL05-08-G19 seven in absentia (SINA) family protein low similarity to SP|P21461 Developmental protein seven in absentia {Drosophila melanogaster}; contains Pfam profile PF03145: Seven in absentia protein family
1_22830001_22860000					A	B	C	D	P	P'	N
	Cluster:10-2				3	106	3	4551	2.3612964E-4	7.083889E-4	3
		RAFL08-15-K01	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-15-K01 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-03-G20	At1g62600 / flavin-containing monooxygenase (FMO) family		RAFL05-03-G20 ,At1g62600 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase 2 from Cavia porcellus [SP|P36366]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
		RAFL08-13-K06	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-13-K06 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
	Cluster:7-0				2	245	4	4412	0.036386058	0.10915817	3
		RAFL08-10-D22	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-10-D22 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-04-G22	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL05-04-G22 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
2_3030001_3060000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-B20	At2g07350 / unknown similar to AGI		RAFL05-15-B20 ,At2g07350 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL05-15-B20
1_6600001_6630000					A	B	C	D	P	P'	N
	Cluster:9-2				3	64	1	4595	1.1229972E-5	2.2459944E-5	2
		RAFL09-09-P15	At1g19180 / expressed protein		RAFL09-09-P15 ,At1g19180 expressed protein
		RAFL06-10-F03	At1g19180 / expressed protein		RAFL06-10-F03 ,At1g19180 expressed protein
		RAFL05-02-L02	At1g19180 / expressed protein		RAFL05-02-L02 ,At1g19180 expressed protein
1_4710001_4740000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-14-G09	At1g13740 / expressed protein		At1g13740 ,RAFL08-14-G09 expressed protein
3_8910001_8940000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-18-B19	At3g24503 / aldehyde dehydrogenase (ALDH1a)		At3g24503 ,RAFL04-18-B19 aldehyde dehydrogenase (ALDH1a) identical to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana] gi|20530143|gb|AAM27004
2_10830001_10860000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL03-05-A09	At2g25620 / protein phosphatase 2C (PP2C), putative		RAFL03-05-A09 ,At2g25620 protein phosphatase 2C, putative / PP2C, putative
1_19500001_19800000					A	B	C	D	P	P'	N
	Cluster:9-0				4	28	13	4618	4.0860064E-6	4.0860064E-5	10
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
	Cluster:9-1				2	94	15	4552	0.04667572	0.4667572	10
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
		RAFL05-10-D21	At1g54120 / expressed protein		At1g54120 ,RAFL05-10-D21 expressed protein
1_16230001_16260000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-08-A22	At1g44000 / expressed protein		At1g44000 ,RAFL07-08-A22 expressed protein
1_17340001_17370000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL06-15-O23	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL06-15-O23 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
		RAFL07-07-N10	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL07-07-N10 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
1_210001_240000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL07-15-C03	At1g01610 / expressed protein		At1g01610 ,RAFL07-15-C03 phospholipid/glycerol acyltransferase family protein similar to unknown protein GI:3335359 from [Arabidopsis thaliana]
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL09-06-M22	At1g01620 / plasma membrane intrinsic protein 1c		At1g01620 ,RAFL09-06-M22 plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane protein B (TMPB) identical to plasma membrane intrinsic protein 1c SP:Q08733 from [Arabidopsis thaliana]
4_8100001_8400000					A	B	C	D	P	P'	N
	Cluster:0-1				3	103	13	4544	0.0051543964	0.04638957	9
		RAFL09-09-G02	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-09-G02 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-18-F20	At4g16370 / isp4 like protein		At4g16370 ,RAFL04-18-F20 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL09-16-G24	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-16-G24 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	Cluster:7-0				4	243	12	4404	0.008436354	0.07592718	9
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,RAFL11-12-D09 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL05-17-H06	At4g16190 / cysteine proteinase		RAFL05-17-H06 ,At4g16190 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,RAFL08-11-G18 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL02-06-D19	At4g16520 / symbiosis-related like protein		At4g16520 ,RAFL02-06-D19 autophagy 8f (APG8f) identical to autophagy 8f [Arabidopsis thaliana] GI:19912161; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3
	Cluster:3-0				3	230	13	4417	0.04257905	0.38321143	9
		RAFL09-09-O07	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL09-09-O07 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL06-16-N16	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL06-16-N16 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL07-08-A13	At4g16660 / heat shock protein hsp70, putative		RAFL07-08-A13 ,At4g16660 heat shock protein 70, putative / HSP70, putative
5_21570001_21600000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-A17	At5g53890 / leucine-rich repeat transmembrane protein kinase, putative		RAFL08-11-A17 ,At5g53890 leucine-rich repeat transmembrane protein kinase, putative
1_20430001_20460000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-20-G22	At1g55805 / expressed protein		RAFL04-20-G22 ,At1g55805 BolA-like family protein contains Pfam profile: PF01722 BolA-like protein
5_15540001_15570000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
3_20130001_20160000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-15-L23	At3g54360 / RING finger - like protein		At3g54360 ,RAFL06-15-L23 expressed protein DNA-binding Mel-18 protein, Homo sapiens, PIR:JN0717
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-16-C09	At3g54400 / nucleoid DNA-binding - like protein		RAFL05-16-C09 ,At3g54400 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease
4_600001_900000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	5	4418	0.046670057	0.28002036	6
		RAFL06-15-N06	At4g02010 / protein kinase family		RAFL06-15-N06 ,At4g02010 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL07-12-K16	At4g01750 / expressed protein		At4g01750 ,RAFL07-12-K16 expressed protein T15B16.8
3_9810001_9840000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	1	4522	0.0026325006	0.005265001	2
		RAFL06-15-H18	At3g26740 / light regulated protein -related		At3g26740 ,RAFL06-15-H18 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
		RAFL05-02-K03	At3g26740 / light regulated protein -related		At3g26740 ,RAFL05-02-K03 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
3_10770001_10800000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	2	4346	0.00275674	0.00827022	3
		RAFL05-10-J16	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-10-J16 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL11-03-E07	At3g28715 / expressed protein		At3g28715 ,RAFL11-03-E07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL09-18-I07	At3g28715 / expressed protein		At3g28715 ,RAFL09-18-I07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
1_17520001_17550000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-08-N14	At1g48570 / expressed protein		RAFL06-08-N14 ,At1g48570 zinc finger (Ran-binding) family protein contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others
5_12000001_15000000					A	B	C	D	P	P'	N
	Cluster:4-1				5	305	24	4329	0.03993594	0.678911	17
		RAFL11-03-L10	At5g37260 / myb family transcription factor		RAFL11-03-L10 ,At5g37260 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL05-18-D04	At5g36880 / acetyl-CoA synthetase (acetate-CoA ligase), putative		RAFL05-18-D04 ,At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative similar to SP|P27550 (Escherichia coli) and gi:8439651 (Homo sapiens); contains Pfam AMP-binding enzyme domain PF00501
		RAFL11-05-O08	At5g35200 / expressed protein		RAFL11-05-O08 ,At5g35200 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to clathrin assembly protein short form, Rattus norvegicus, EMBL:AF041373;similar to Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo sapiens}
		RAFL06-08-D19	At5g37510 / NADH dehydrogenase (ubiquinone), mitochondrial, putative		At5g37510 ,RAFL06-08-D19 NADH-ubiquinone dehydrogenase, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum [SP|Q43644]
		RAFL09-09-P07	At5g37360 / expressed protein		At5g37360 ,RAFL09-09-P07 expressed protein
5_10470001_10500000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-N05	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL06-08-N05 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
		RAFL07-11-O19	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL07-11-O19 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
4_1260001_1290000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
1_17880001_17910000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	1	4638	0.01026841	0.02053682	2
		RAFL05-16-F03	At1g49450 / transducin / WD-40 repeat protein family		RAFL05-16-F03 ,At1g49450 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to En/Spm-like transposon protein GI:2739374 from [Arabidopsis thaliana]; no characterized homologs
1_27210001_27240000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-09-D01	At1g73330 / Dr4(protease inhibitor)		RAFL05-09-D01 ,At1g73330 protease inhibitor, putative (DR4) identical to Dr4 GI:469114 from [Arabidopsis thaliana]; contains Pfam profile PF00197: Trypsin and protease inhibitor
5_19800001_20100000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	3	4525	0.007856598	0.023569794	3
		RAFL02-04-I05	At5g49540 / expressed protein		RAFL02-04-I05 ,At5g49540 expressed protein contains Pfam profile PF05646: Protein of unknown function (DUF786)
		RAFL05-16-L10	At5g49970 / expressed protein		At5g49970 ,RAFL05-16-L10 pyridoxamine 5'-phosphate oxidase-related contains weak similarity to Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx). (Swiss-Prot:P28225) [Shigella flexneri]
	Cluster:3-1				2	214	3	4444	0.019467412	0.058402237	3
		RAFL05-02-G06	At5g49720 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		RAFL05-02-G06 ,At5g49720 endo-1,4-beta-glucanase KORRIGAN (KOR) / cellulase (OR16pep) identical to endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis thaliana] GI:3978258; similar to endo-1,4-beta-D-glucanase; cellulase GI:5689613 from [Brassica napus]; identical to cDNA cellulase (OR16pep) GI:1022806
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
1_20670001_20700000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
5_5250001_5280000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL05-17-J22	At5g16110 / expressed protein		At5g16110 ,RAFL05-17-J22 expressed protein hypothetical protein T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
		RAFL09-15-H19	At5g16120 / hydrolase, alpha/beta fold family		At5g16120 ,RAFL09-15-H19 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
2_15210001_15240000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-18-K13	At2g36430 / expressed protein		At2g36430 ,RAFL05-18-K13 expressed protein contains Pfam profile PF03140: Plant protein of unknown function
1_60001_90000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL04-16-A16	At1g01140 / CBL-interacting protein kinase 9		RAFL04-16-A16 ,At1g01140 CBL-interacting protein kinase 9 (CIPK9) identical to CBL-interacting protein kinase 9 [Arabidopsis thaliana] gi|13249117|gb|AAK16684; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 9 (CIPK9) GI:13249116
2_7080001_7110000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-I02	At2g16500 / arginine decarboxylase		RAFL04-17-I02 ,At2g16500 arginine decarboxylase 1 (SPE1) (ARGDC) identical to SP|Q9SI64 Arginine decarboxylase 1 (EC 4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis thaliana}
1_24900001_24930000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-12-K17	At1g67430 / 60S ribosomal protein L17 (RPL17B)		RAFL05-12-K17 ,At1g67430 60S ribosomal protein L17 (RPL17B) similar to ribosomal protein GI:19101 from [Hordeum vulgare]
1_4140001_4170000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
5_18660001_18690000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	0	4447	0.0021362621	0.0021362621	1
		RAFL06-11-E12	At5g46710 / expressed protein		RAFL06-11-E12 ,At5g46710 zinc-binding family protein similar zinc-binding protein [Pisum sativum] GI:16117799; contains Pfam profile PF04640 : Protein of unknown function, DUF597
		RAFL05-09-J08	At5g46700 / senescence-associated protein, putative		At5g46700 ,RAFL05-09-J08 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855
1_17100001_17130000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL11-11-L21	At1g47640 / expressed protein		RAFL11-11-L21 ,At1g47640 expressed protein similar to seven transmembrane domain protein GI:3550427 from [Homo sapiens]
1_21240001_21270000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
3_9750001_9780000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-16-E17	At3g26570 / phosphate transporter -related		RAFL07-16-E17 ,At3g26570 phosphate transporter family protein contains Pfam profile: PF01384 phosphate transporter family
3_23160001_23190000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-01-A10	At3g62650 / expressed protein		RAFL11-01-A10 ,At3g62650 expressed protein putative mitochondrial carrier protein At2g47490 - Arabidopsis thaliana, EMBL:AC002535
1_9840001_9870000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-08-H09	At1g28200 / GRAM domain-containing protein		RAFL05-08-H09 ,At1g28200 GRAM domain-containing protein / ABA-responsive protein-related similar to ABA-responsive protein [Hordeum vulgare] GI:4103635; contains Pfam profile PF02893: GRAM domain
2_1800001_1830000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-14-C14	At2g05100 / light-harvesting chlorophyll a/b binding protein		RAFL04-14-C14 ,At2g05100 chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein
5_3510001_3540000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-10-N03	At5g11070 / expressed protein		RAFL05-10-N03 ,At5g11070 expressed protein
5_15360001_15390000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-I23	At5g39130 / germin-like protein (AtGER2)		At5g39130 ,RAFL06-08-I23 germin-like protein, putative identical to germin-like protein subfamily 1 member 16 (SP|Q9FIC8)
1_5130001_5160000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	2	4421	0.0147742275	0.044322684	3
		RAFL04-16-H01	At1g14960 / major latex protein (MLP)-related		At1g14960 ,RAFL04-16-H01 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:20810] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL04-12-M16	At1g14910 / expressed protein		RAFL04-12-M16 ,At1g14910 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo sapiens}
3_510001_540000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	2	4445	0.012046366	0.036139097	3
		RAFL04-18-N09	At3g02530 / chaperonin, putative		RAFL04-18-N09 ,At3g02530 chaperonin, putative similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL08-18-F20	At3g02530 / chaperonin, putative		RAFL08-18-F20 ,At3g02530 chaperonin, putative similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
	Cluster:9-0				1	31	3	4628	0.027177518	0.08153255	3
		RAFL05-05-G20	At3g02480 / expressed protein		At3g02480 ,RAFL05-05-G20 ABA-responsive protein-related similar to ABA-inducible protein [Fagus sylvatica] GI:3901016, cold-induced protein kin1 [Brassica napus] GI:167146
2_14220001_14250000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-14-L19	At2g33800 / ribosomal protein S5 family		At2g33800 ,RAFL07-14-L19 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain
5_21120001_21150000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-09-O08	At5g52870 / expressed protein		RAFL07-09-O08 ,At5g52870 expressed protein similar to unknown protein (gb|AAF24565.1)
3_8130001_8160000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-G03	At3g22960 / pyruvate kinase, putative		At3g22960 ,RAFL05-21-G03 pyruvate kinase, putative similar to pyruvate kinase isozyme A, chloroplast precursor [Ricinus communis] SWISS-PROT:Q43117
5_21450001_21480000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL04-20-H14	At5g53570 / GTPase activator protein of Rab-related small GTPases-like protein		RAFL04-20-H14 ,At5g53570 RabGAP/TBC domain-containing protein similar to GTPase activating protein [Yarrowia lipolytica] GI:2370595; contains Pfam profile PF00566: TBC domain
1_9540001_9570000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-14-H17	At1g27540 / F-box protein family		At1g27540 ,RAFL05-14-H17 F-box family protein similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]; confirmed by FLcDNA GI:16604421; contains uncharacterized Arabidoppsis domain shared by 33 Arabidopsis proteins
4_16530001_16560000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-16-P21	At4g37370 / cytochrome P450, putative		At4g37370 ,RAFL04-16-P21 cytochrome P450, putative similar to Cytochrome P450 91A1 (SP:Q9FG65 )[Arabidopsis thaliana]; cytochrome P450, Glycyrrhiza echinata, AB001379
4_2400001_2700000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	10	4591	0.010537887	0.10537887	10
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
5_4410001_4440000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL04-09-C09	At5g13750 / transporter-related protein		At5g13750 ,RAFL04-09-C09 transporter-related
		RAFL06-09-O18	At5g13750 / transporter-related protein		At5g13750 ,RAFL06-09-O18 transporter-related
1_28980001_29010000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL09-14-A12	At1g78070 / expressed protein		At1g78070 ,RAFL09-14-A12 WD-40 repeat family protein contains Pfam profile PF00400: WD domain, G-beta repeat
5_21600001_21900000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	9	4575	0.014118112	0.11294489	8
		RAFL02-10-L11	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		RAFL02-10-L11 ,At5g54270 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL02-06-M22	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		At5g54270 ,RAFL02-06-M22 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	Cluster:8-0				2	107	9	4545	0.025949622	0.20759697	8
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
4_17250001_17280000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL11-02-K13	At4g39330 / mannitol dehydrogenase, putative		RAFL11-02-K13 ,At4g39330 mannitol dehydrogenase, putative nearly identical to SP|P42734, probable mannitol dehydrogenase
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-16-C15	At4g39350 / cellulose synthase, catalytic subunit (Ath-A)		At4g39350 ,RAFL07-16-C15 cellulose synthase, catalytic subunit (Ath-A) identical to gi:2827141
3_6090001_6120000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	3	4551	0.005170766	0.020683063	4
		RAFL08-13-J12	At3g17800 / expressed protein		At3g17800 ,RAFL08-13-J12 expressed protein
		RAFL05-05-N22	At3g17810 / dehydrogenase -related		RAFL05-05-N22 ,At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase
5_3870001_3900000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-10-F16	At5g12050 / serine rich protein -related		RAFL05-10-F16 ,At5g12050 expressed protein
4_9060001_9090000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-01-H22	At4g18280 / glycine-rich cell wall protein-related		At4g18280 ,RAFL05-01-H22 glycine-rich cell wall protein-related glycine-rich protein 1.0 precursor, Phaseolus vulgaris, PIR1:S01821
1_29880001_29910000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL06-11-H07	At1g80460 / glycerol kinase -related		At1g80460 ,RAFL06-11-H07 glycerol kinase, putative similar to glycerol kinase (ATP:glycerol 3-phosphotransferase, Glycerokinase, GK)[Mycobacterium tuberculosis] Swiss-Prot:O69664
1_23610001_23640000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-16-M10	At1g64550 / ABC transporter family protein		RAFL04-16-M10 ,At1g64550 ABC transporter family protein similar to ABC transporter protein GB:AAF31030 GI:6899653 from [Leishmania major]
2_1890001_1920000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-10-D01	At2g05220 / 40S ribosomal protein S17 (RPS17B)		RAFL05-10-D01 ,At2g05220 40S ribosomal protein S17 (RPS17B)
5_26280001_26310000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	2	4487	0.007905076	0.023715228	3
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,RAFL03-03-A07 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL11-12-B10 ,At5g66570 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
4_13200001_13500000					A	B	C	D	P	P'	N
	Cluster:8-1				3	159	12	4489	0.013768106	0.110144846	8
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
	Cluster:4-1				4	306	11	4342	0.014559092	0.116472736	8
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-09-P07	At4g29120 / expressed protein		RAFL05-09-P07 ,At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase
		RAFL08-16-B20	At4g29260 / acid phosphatase-related protein		At4g29260 ,RAFL08-16-B20 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
4_10230001_10260000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	1	4415	0.008091402	0.016182804	2
		RAFL06-15-J24	At4g21110 / G10 - like protein		RAFL06-15-J24 ,At4g21110 G10 family protein contains Pfam profile: PF01125 G10 protein
		RAFL08-17-N18	At4g21160 / zinc finger and C2 domain protein (ZAC)		At4g21160 ,RAFL08-17-N18 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana]
4_10620001_10650000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-16-C12	At4g21980 / symbiosis-related like protein		At4g21980 ,RAFL04-16-C12 autophagy 8a (APG8a) identical to autophagy 8a [Arabidopsis thaliana] GI:19912151; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3
Chromosome:2					A	B	C	D	P	P'	N
	Cluster:4-0				44	196	580	3843	0.02489118	0.821409	33
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL04-16-C20	At2g31390 / fructokinase, putative		RAFL04-16-C20 ,At2g31390 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL06-09-H15	At2g47400 / chloroplast protein CP12 -related		RAFL06-09-H15 ,At2g47400 CP12 domain-containing protein contains Pfam profile: PF02672 CP12 domain
		RAFL06-15-F22	At2g46600 / calcium-binding protein, putative		RAFL06-15-F22 ,At2g46600 calcium-binding protein, putative similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] GI:9255753
		RAFL06-16-I15	At2g05380 / glycine-rich protein		RAFL06-16-I15 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL08-18-E23	At2g01420 / auxin transport protein, putative		RAFL08-18-E23 ,At2g01420 auxin transport protein, putative similar to auxin transport protein PIN7[Arabidopsis thaliana] gi|5817305|gb|AAD52697
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-09-D04	At2g39570 / ACT domain-containing protein		At2g39570 ,RAFL08-09-D04 ACT domain-containing protein contains Pfam ACT domain PF01842
		RAFL07-08-P19	At2g19650 / CHP-rich zinc finger protein, putative		At2g19650 ,RAFL07-08-P19 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain
		RAFL11-05-K19	At2g20230 / expressed protein		At2g20230 ,RAFL11-05-K19 expressed protein
		RAFL08-13-K01	At2g18160 / bZIP family transcription factor		RAFL08-13-K01 ,At2g18160 bZIP transcription factor family protein contains a bZIP transcription factor basic domain signature (PDOC00036)
		RAFL05-07-O19	At2g38550 / non-green plastid inner envelope membrane protein -related		At2g38550 ,RAFL05-07-O19 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136)
		RAFL04-12-F21	At2g25080 / glutathione peroxidase, putative		At2g25080 ,RAFL04-12-F21 phospholipid hydroperoxide glutathione peroxidase, chloroplast / PHGPx (GPX1) identical to SP|P52032 Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor (EC 1.11.1.9) (PHGPx) {Arabidopsis thaliana}; contains Glutathione peroxidases signatures, Glutathione_Peroxid_1 [GKVMLIVNVASRCGLT], Glutathione_Peroxid_2 [LAFPCNQF]; contains EST GB:T43669, N38679, R30227, H37043, AA042773; identical to cDNA chloroplast mRNA for glutathione peroxidase GI:2274856
		RAFL09-06-B02	At2g39990 / 26S proteasome regulatory subunit		At2g39990 ,RAFL09-06-B02 eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to SP|O04202 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
		RAFL05-10-J18	At2g15890 / expressed protein		At2g15890 ,RAFL05-10-J18 expressed protein
		RAFL05-12-M02	At2g20490 / expressed protein		At2g20490 ,RAFL05-12-M02 nucleolar RNA-binding Nop10p family protein similar to Nop10p (GI:8096260) [Homo sapiens]
		RAFL08-09-I23	At2g44090 / expressed protein		At2g44090 ,RAFL08-09-I23 expressed protein
		RAFL07-15-I12	At2g46280 / eukaryotic translation initiation factor 3 subunit 2/TGF-beta receptor interacting protein 1 (eIF-3 beta) (eIF3 p36) (eIF3i) (TRIP-1)		At2g46280 ,RAFL07-15-I12 eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies)
		RAFL04-13-A11	At2g29340 / short-chain dehydrogenase/reductase family protein		RAFL04-13-A11 ,At2g29340 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase-I GI:424160 from [Datura stramonium]
		RAFL04-16-O18	At2g40360 / transducin / WD-40 repeat protein family		At2g40360 ,RAFL04-16-O18 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus]
		RAFL04-14-F04	At2g21960 / expressed protein		At2g21960 ,RAFL04-14-F04 expressed protein
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL04-15-D03	At2g24200 / leucine aminopeptidase -related		RAFL04-15-D03 ,At2g24200 cytosol aminopeptidase identical to cytosol aminopeptidase SP:P30184 from [Arabidopsis thaliana]; contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain
		RAFL02-02-E01	At2g25900 / CCCH-type zinc finger protein -related		At2g25900 ,RAFL02-02-E01 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL07-18-L02	At2g44860 / 60S ribosomal protein L24, putative		RAFL07-18-L02 ,At2g44860 60S ribosomal protein L24, putative
		RAFL07-17-H23	At2g46060 / expressed protein		At2g46060 ,RAFL07-17-H23 transmembrane protein-related contains weak similarity to Swiss-Prot:Q9HCN3 transmembrane protein 8 precursor (M83 protein) [Homo sapiens]
		RAFL08-11-L01	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL08-11-L01 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL04-10-N15	At2g20725 / CAAX amino terminal protease family		At2g20725 ,RAFL04-10-N15 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein
		RAFL11-04-J10	At2g43050 / pectinesterase family		RAFL11-04-J10 ,At2g43050 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
		RAFL05-04-F15	At2g21860 / expressed protein		RAFL05-04-F15 ,At2g21860 violaxanthin de-epoxidase-related contains weak similarity to violaxanthin de-epoxidase precursor gi|1438875|gb|AAC49373
		RAFL06-13-N10	At2g22980 / serine carboxypeptidase -related		RAFL06-13-N10 ,At2g22980 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase I precursor (SP:P37890) from [Oryza sativa]
		RAFL05-10-J02	At2g21290 / expressed protein		At2g21290 ,RAFL05-10-J02 expressed protein
		RAFL11-04-F01	At2g18900 / transducin / WD-40 repeat protein family		RAFL11-04-F01 ,At2g18900 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) [Leishmania donovani]
		RAFL11-04-E24	At2g14200 / pseudogene, similar to gag-pol polyprotein (Ty1_Copia-element) (Glycine max) (GB:AAC64917)		RAFL11-04-E24 ,At2g14200 copia-like retrotransposon family has a 3.0e-133 P-value blast match to gb|AAO73523.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
		RAFL05-21-K20	At2g34760 / pseudogene, tubulin beta chain		RAFL05-21-K20 ,At2g34760 pseudogene, tubulin beta chain -related similar to beta-7 tubulin GI:416149 from [Zea mays]; blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). [Maize] {Zea mays}
		RAFL07-14-E01	At2g38080 / laccase (diphenol oxidase), putative		At2g38080 ,RAFL07-14-E01 laccase, putative / diphenol oxidase, putative similar to diphenol oxidase [Nicotiana tabacum][GI:1685087]
		RAFL05-16-A08	At2g16600 / cytosolic cyclophilin (ROC3)		At2g16600 ,RAFL05-16-A08 peptidyl-prolyl cis-trans isomerase, cytosolic / cyclophilin / rotamase (ROC3) identical to cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
		RAFL07-17-N22	At2g05380 / glycine-rich protein		RAFL07-17-N22 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL09-13-F17	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL09-13-F17 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL05-19-K12	At2g06990 / RNA helicase (HUA enhancer 2/HEN2)		At2g06990 ,RAFL05-19-K12 HUA enhancer 2 (HEN2) / DExH-box RNA helicase, putative nearly identical to HUA enhancer 2 [Arabidopsis thaliana] GI:16024936
		RAFL06-08-O23	At2g18280 / F-box containing tubby family protein		RAFL06-08-O23 ,At2g18280 tubby-like protein 2 (TULP2) identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
		RAFL05-07-D14	At2g38380 / peroxidase		At2g38380 ,RAFL05-07-D14 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E identical to SP|P24102 Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic peroxidase E) {Arabidopsis thaliana}; identical to cDNA class III peroxidase ATPEa, GI:17530569
		RAFL09-18-N20	At2g40940 / ethylene response sensor (ERS)		RAFL09-18-N20 ,At2g40940 ethylene response sensor / ethylene-responsive sensor (ERS) identical to ethylene response sensor (ERS) [Arabidopsis thaliana] GI:1046225
		RAFL04-13-A22	At2g40765 / expressed protein		RAFL04-13-A22 ,At2g40765 expressed protein
5_7080001_7110000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL09-15-K03	At5g20900 / expressed protein		At5g20900 ,RAFL09-15-K03 expressed protein
2_8790001_8820000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-20-C11	At2g20570 / golden2-related transcription factor (GLK1)		At2g20570 ,RAFL04-20-C11 golden2-like transcription factor (GLK1) identical to golden2-like transcription factor GI:13311003 from [Arabidopsis thaliana]; contains Pfam profile: PF00249 Myb-like DNA-binding domain
3_22770001_22800000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-06-F17	At3g61580 / delta-8 sphingolipid desaturase (SLD1)		RAFL09-06-F17 ,At3g61580 delta-8 sphingolipid desaturase (SLD1) identical to delta-8 sphingolipid desaturase GI:3819710 from [Arabidopsis thaliana]; contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding domain
2_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:4-0				3	237	11	4412	0.03215115	0.3215115	10
		RAFL04-16-O18	At2g40360 / transducin / WD-40 repeat protein family		At2g40360 ,RAFL04-16-O18 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus]
		RAFL09-18-N20	At2g40940 / ethylene response sensor (ERS)		RAFL09-18-N20 ,At2g40940 ethylene response sensor / ethylene-responsive sensor (ERS) identical to ethylene response sensor (ERS) [Arabidopsis thaliana] GI:1046225
		RAFL04-13-A22	At2g40765 / expressed protein		RAFL04-13-A22 ,At2g40765 expressed protein
3_19200001_19230000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-19-K24	At3g51820 / chlorophyll synthetase, putative		RAFL04-19-K24 ,At3g51820 chlorophyll synthetase, putative identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thaliana
5_13500001_13800000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-16-N11	At5g35630 / glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1) (pir||S18600)		At5g35630 ,RAFL04-16-N11 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-- ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
1_3540001_3570000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-07-N24	At1g10740 / lipase -related		At1g10740 ,RAFL11-07-N24 expressed protein
1_18780001_18810000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-01-G12	At1g51760 / IAA-Ala hydrolase (IAR3)		At1g51760 ,RAFL05-01-G12 IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3) identical to IAA-Ala hydrolase (IAR3) [Arabidopsis thaliana] GI:3421384
3_20070001_20100000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	3	4416	0.024550742	0.098202966	4
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
4_30001_60000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-02-J15	At4g00100 / 40S ribosomal protein S13 (RPS13B)		At4g00100 ,RAFL11-02-J15 40S ribosomal protein S13 (RPS13A) similar to ribosomal protein S13; PF00312 (View Sanger Pfam): ribosomal protein S15; identical to cDNA AtRPS13A mRNA for cytoplasmic ribosomal protein S13 GI:6521011
1_24420001_24450000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-07-J12	At1g66430 / pfkB type carbohydrate kinase protein family		At1g66430 ,RAFL05-07-J12 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
4_6600001_6900000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	5	4621	0.046698898	0.2801934	6
		RAFL04-19-L09	At4g13580 / disease resistance response protein-related		RAFL04-19-L09 ,At4g13580 disease resistance-responsive family protein contains similarity to pathogenesis-related protein [Pisum sativum] gi|4585273|gb|AAD25355
5_21480001_21510000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-19-A05	At5g53620 / expressed protein		At5g53620 ,RAFL04-19-A05 expressed protein
2_5460001_5490000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	2	4428	0.013951966	0.041855898	3
		RAFL05-18-J16	At2g13360 / alanine-glyoxylate aminotransferase		RAFL05-18-J16 ,At2g13360 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL05-10-L06	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL05-10-L06 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
3_5100001_5130000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL09-12-K18	At3g15190 / chloroplast 30S ribosomal protein S20, putative		RAFL09-12-K18 ,At3g15190 chloroplast 30S ribosomal protein S20, putative contains Pfam profile: PF01649 ribosomal protein S20
		RAFL04-16-I22	At3g15190 / chloroplast 30S ribosomal protein S20, putative		At3g15190 ,RAFL04-16-I22 chloroplast 30S ribosomal protein S20, putative contains Pfam profile: PF01649 ribosomal protein S20
1_4320001_4350000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL09-06-K20	At1g12680 / protein kinase family		RAFL09-06-K20 ,At1g12680 protein kinase family protein contains protein kinase domain, Pfam:PF00069
2_9000001_9300000					A	B	C	D	P	P'	N
	Cluster:0-1				6	100	15	4542	4.9245464E-6	6.40191E-5	13
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
4_9000001_9030000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL06-12-M01	At4g18170 / WRKY family transcription factor		At4g18170 ,RAFL06-12-M01 WRKY family transcription factor similar to DNA-binding protein 2 GI:4322940 from [Nicotiana tabacum]; contains Pfam profile: PF03106 WRKY DNA -binding domain
3_1830001_1860000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL03-04-H03	At3g06130 / heavy-metal-associated domain-containing protein		At3g06130 ,RAFL03-04-H03 heavy-metal-associated domain-containing protein contains Pfam heavy metal associated domain PF00403
5_6960001_6990000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL04-09-K06	At5g20630 / germin-like protein (AtGER3)		RAFL04-09-K06 ,At5g20630 germin-like protein (GER3) identical to germin-like protein subfamily 3 member 3 [SP|P94072]
5_4140001_4170000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-12-K02	At5g13120 / peptidyl-prolyl isomerase protein		At5g13120 ,RAFL09-12-K02 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
5_22530001_22560000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
2_13620001_13650000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL09-09-P16	At2g32240 / myosin heavy chain -related		RAFL09-09-P16 ,At2g32240 expressed protein contains Pfam profile: PF04508 viral A-type inclusion protein repeat
1_6210001_6240000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-14-K24	At1g18060 / expressed protein		At1g18060 ,RAFL05-14-K24 expressed protein
3_2370001_2400000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL02-08-P16	At3g07470 / expressed protein		At3g07470 ,RAFL02-08-P16 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
1_5850001_5880000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-P24	At1g17160 / pfkB type carbohydrate kinase protein family		RAFL06-07-P24 ,At1g17160 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
1_2910001_2940000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-I10	At1g09100 / 26S protease regulatory subunit 6A		RAFL08-09-I10 ,At1g09100 26S protease regulatory subunit 6A, putative identical to SP:O04019 from [Arabidopsis thaliana]
4_16290001_16320000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	2	4346	0.024916494	0.074749485	3
		RAFL11-05-H14	At4g36800 / RUB1-conjugating enzyme RCE1, putative		At4g36800 ,RAFL11-05-H14 RUB1-conjugating enzyme, putative (RCE1) this gene is frameshifted and may be a pseudogene; identical over first 79 amino acids to RUB1 conjugating enzyme [Arabidopsis thaliana] GI:6635457
		RAFL05-14-L02	At4g36800 / RUB1-conjugating enzyme RCE1, putative		At4g36800 ,RAFL05-14-L02 RUB1-conjugating enzyme, putative (RCE1) this gene is frameshifted and may be a pseudogene; identical over first 79 amino acids to RUB1 conjugating enzyme [Arabidopsis thaliana] GI:6635457
2_9180001_9210000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-18-C17	At2g21620 / auxin-regulated protein		RAFL05-18-C17 ,At2g21620 universal stress protein (USP) family protein / responsive to dessication protein (RD2) strong similarity to RD2 protein [Arabidopsis thaliana] GI:15320408; contains Pfam profile PF00582: universal stress protein family; identical to cDNA RD2 GI:15320407
1_8520001_8550000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-19-M06	At1g24100 / UDP-glycosyltransferase family		At1g24100 ,RAFL04-19-M06 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
2_18090001_18120000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL07-12-I23	At2g43820 / glycosyltransferase family		At2g43820 ,RAFL07-12-I23 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
1_20700001_21000000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	5	4425	0.044206142	0.26523685	6
		RAFL09-17-N17	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-17-N17 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
		RAFL09-18-P19	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-18-P19 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
4_16590001_16620000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	2	4379	0.02015854	0.06047562	3
		RAFL07-07-F08	At4g37550 / formamidase - like protein		RAFL07-07-F08 ,At4g37550 formamidase, putative / formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family
		RAFL04-13-J09	At4g37560 / formamidase - like protein		At4g37560 ,RAFL04-13-J09 formamidase, putative / formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family
	Cluster:0-0				1	35	3	4624	0.030535331	0.09160599	3
		RAFL07-10-M24	At4g37510 / expressed protein		At4g37510 ,RAFL07-10-M24 ribonuclease III family protein contains Pfam profile PF00636 RNase3 domain
4_17100001_17400000					A	B	C	D	P	P'	N
	Cluster:6-2				3	173	19	4468	0.048056807	0.8169657	17
		RAFL04-12-A03	At4g39220 / AtRer1A		RAFL04-12-A03 ,At4g39220 RER1A protein identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana}
		RAFL07-09-H03	At4g38900 / bZIP protein		At4g38900 ,RAFL07-09-H03 bZIP protein vsf-1 protein, Lycopersicon esculentum, PIR2:S52203
		RAFL02-09-D23	At4g39200 / 40S ribosomal protein S25 (RPS25E)		RAFL02-09-D23 ,At4g39200 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2:S40089
2_17400001_17430000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL08-09-E20	At2g41840 / 40S ribosomal protein S2 (RPS2C)		RAFL08-09-E20 ,At2g41840 40S ribosomal protein S2 (RPS2C)
1_6150001_6180000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-07-A03	At1g17870 / expressed protein		At1g17870 ,RAFL05-07-A03 expressed protein contains 6 transmembrane domains; similar to predicted metalloproteases
1_29550001_29580000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-08-E22	At1g79550 / phosphoglycerate kinase -related		RAFL06-08-E22 ,At1g79550 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
1_22800001_22830000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-14-E16	At1g62570 / flavin-containing monooxygenase (FMO) family		At1g62570 ,RAFL05-14-E16 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase FMO3 [Rattus norvegicus] GI:12006730; contains Pfam profile PF00743: Flavin-binding monooxygenase-like
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-16-L12	At1g62560 / flavin-containing monooxygenase (FMO) family		At1g62560 ,RAFL09-16-L12 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase GB:AAA21178 GI:349534 SP|P32417 from [Oryctolagus cuniculus]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
1_2550001_2580000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	2	4624	0.02362106	0.07086318	3
		RAFL04-17-M23	At1g08200 / dihydroflavonol reductase -related		At1g08200 ,RAFL04-17-M23 expressed protein
4_9390001_9420000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-I10	At4g19110 / protein kinase, putative		At4g19110 ,RAFL09-17-I10 protein kinase, putative contains protein kinase domain, Pfam:PF00069
5_9600001_9900000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	7	4341	0.025661359	0.20529087	8
		RAFL04-09-C14	At5g27640 / eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta / eIF3 p110 / eIF3b)		At5g27640 ,RAFL04-09-C14 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
		RAFL05-04-A18	At5g27670 / histone H2A, putative		RAFL05-04-A18 ,At5g27670 histone H2A, putative similar to histone H2A Lycopersicon esculentum SP|P25469, Pisum sativum SP|P25470, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL11-13-N18	At5g27720 / glycine rich protein - like		At5g27720 ,RAFL11-13-N18 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
3_7050001_7080000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-M06	At3g20290 / calcium-binding EF-hand family protein		RAFL05-07-M06 ,At3g20290 calcium-binding EF hand family protein similar to EH-domain containing protein 1 from {Mus musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9, receptor-mediated endocytosis 1 from [Caenorhabditis elegans] GI:13487775, GI:13487777, GI:13487779; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
1_24000001_24030000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-01-H10	At1g65560 / allyl alcohol dehydrogenase, putative		At1g65560 ,RAFL05-01-H10 allyl alcohol dehydrogenase, putative similar to allyl alcohol dehydrogenase from Nicotiana tabacum [gi:6692816]; similar to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430], Arabidopsis thaliana
1_5370001_5400000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL07-18-D08	At1g15690 / inorganic pyrophosphatase -related		At1g15690 ,RAFL07-18-D08 pyrophosphate-energized vacuolar membrane proton pump / pyrophosphate-energized inorganic pyrophosphatase (AVP-3) identical to pyrophosphate-energized vacuolar membrane proton pump (pyrophosphate-energized inorganic pyrophosphatase) SP:P31414 from [Arabidopsis thaliana]
		RAFL05-18-A12	At1g15690 / inorganic pyrophosphatase -related		At1g15690 ,RAFL05-18-A12 pyrophosphate-energized vacuolar membrane proton pump / pyrophosphate-energized inorganic pyrophosphatase (AVP-3) identical to pyrophosphate-energized vacuolar membrane proton pump (pyrophosphate-energized inorganic pyrophosphatase) SP:P31414 from [Arabidopsis thaliana]
5_8370001_8400000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL04-15-M12	At5g24590 / No apical meristem (NAM) protein family		At5g24590 ,RAFL04-15-M12 turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 (GI:6456751) {Arabidopsis thaliana}; identical to cDNA TIP mRNA, GI:9408600
5_17400001_17700000					A	B	C	D	P	P'	N
	Cluster:1-0				3	146	6	4508	0.0023312767	0.01398766	6
		RAFL04-15-D02	At5g44020 / vegetative storage protein-related		At5g44020 ,RAFL04-15-D02 acid phosphatase class B family protein similar to SP|P15490 STEM 28 kDa glycoprotein precursor (Vegetative storage protein A) {Glycine max}, acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL05-21-P22	At5g44580 / expressed protein		At5g44580 ,RAFL05-21-P22 expressed protein
		RAFL04-16-G05	At5g44340 / tubulin beta-4 chain (TUB4)		At5g44340 ,RAFL04-16-G05 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana}
1_2700001_2730000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-05-J23	At1g08570 / thioredoxin family		At1g08570 ,RAFL05-05-J23 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; similar to ESTs gb|T46281, gb|R83933, gb|N65879, emb|F14466, gb|N96726, gb|AA042340, and emb|Z18150
2_6600001_6900000					A	B	C	D	P	P'	N
	Cluster:2-1				4	240	5	4414	7.48199E-4	0.0037409952	5
		RAFL08-13-H16	At2g15620 / ferredoxin--nitrite reductase		RAFL08-13-H16 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-17-P17	At2g15620 / ferredoxin--nitrite reductase		RAFL07-17-P17 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-10-K10	At2g15620 / ferredoxin--nitrite reductase		RAFL07-10-K10 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL09-17-G12	At2g15620 / ferredoxin--nitrite reductase		RAFL09-17-G12 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
	Cluster:9-1				2	94	7	4560	0.013743652	0.06871826	5
		RAFL05-19-E15	At2g15960 / expressed protein		RAFL05-19-E15 ,At2g15960 expressed protein
		RAFL06-16-B22	At2g15970 / cold acclimation protein WCOR413 (Triticum aestivum) -related		RAFL06-16-B22 ,At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI:10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI:11127595
3_15000001_15300000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-J05	At3g43190 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At3g43190 ,RAFL05-07-J05 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1)
5_18870001_18900000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-14-I17	At5g47240 / MutT/nudix family protein		RAFL05-14-I17 ,At5g47240 MutT/nudix family protein similar to SP|P53370 Nucleoside diphosphate-linked moiety X motif 6 {Homo sapiens}; contains Pfam profile PF00293: NUDIX domain
2_8160001_8190000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL05-21-G06	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL05-21-G06 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL07-08-N11	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		At2g18960 ,RAFL07-08-N11 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
4_4680001_4710000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL09-11-I03	At4g08920 / Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1)		At4g08920 ,RAFL09-11-I03 cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4) contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
3_11190001_11220000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL07-12-I09	At3g29240 / chloroplast lumen common protein family		At3g29240 ,RAFL07-12-I09 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
1_11100001_11400000					A	B	C	D	P	P'	N
	Cluster:0-2				4	75	6	4578	1.4838775E-5	1.03871425E-4	7
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
1_25770001_25800000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-16-I11	At1g69490 / No apical meristem (NAM) protein family		At1g69490 ,RAFL09-16-I11 no apical meristem (NAM) family protein similar to N-term half of NAC domain protein NAM [Arabidopsis thaliana] GI:4325282
5_22140001_22170000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-C20	At5g55310 / DNA topoisomerase I		RAFL08-11-C20 ,At5g55310 DNA topoisomerase I, putative similar to Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis thaliana]
2_19170001_19200000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-08-I11	At2g46820 / expressed protein		At2g46820 ,RAFL06-08-I11 expressed protein
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-20-N17	At2g46830 / MYB-related transcription factor (CCA1)		RAFL05-20-N17 ,At2g46830 myb-related transcription factor (CCA1) identical to myb-related transcription factor (CCA1) GI:4090569 from [Arabidopsis thaliana]
4_15900001_16200000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	14	4553	0.04173314	0.41733137	10
		RAFL02-09-H01	At4g35770 / senescence-associated protein sen1		At4g35770 ,RAFL02-09-H01 senescence-associated protein (SEN1) identical to senescence-associated protein GI:1046270 from [Arabidopsis thaliana]
		RAFL09-16-J23	At4g36040 / DnaJ protein family		RAFL09-16-J23 ,At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) identical to dnaJ heat shock protein J11 [Arabidopsis thaliana] GI:9843641; contains Pfam profile PF00226 DnaJ domain
	Cluster:4-0				3	237	13	4410	0.045870684	0.45870686	10
		RAFL05-21-L13	At4g35880 / expressed protein		RAFL05-21-L13 ,At4g35880 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141
		RAFL06-11-K08	At4g35830 / aconitate hydratase (citrate hydro-lyase/aconitase/ACO) (cytoplasmic)		At4g35830 ,RAFL06-11-K08 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) identical to SP|Q42560 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Arabidopsis thaliana}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain
		RAFL06-11-I04	At4g35750 / expressed protein		RAFL06-11-I04 ,At4g35750 Rho-GTPase-activating protein-related contains weak similarity to Rho-GTPase-activating protein 1 (GTPase-activating protein rhoOGAP) (Rho-related small GTPase protein activator) (CDC42 GTPase-activating protein) (p50-rhoGAP) (Swiss-Prot:Q07960) [Homo sapiens]
2_1560001_1590000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-09-C19	At2g04520 / translation initiation factor eIF-1A -related		At2g04520 ,RAFL04-09-C19 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative strong similarity to translation initiation factor (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam profile PF01176: Eukaryotic initiation factor 1A
3_16740001_16770000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-17-K15	At3g45640 / mitogen-activated protein kinase (MAPK), putative (MPK3)		At3g45640 ,RAFL04-17-K15 mitogen-activated protein kinase, putative / MAPK, putative (MPK3) identical to mitogen-activated protein kinase homolog (AtMPK3)[Arabidopsis thaliana] SWISS-PROT:Q39023; PMID:12119167
1_21090001_21120000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL11-13-H03	At1g58080 / ATP phosphoribosyl transferase		RAFL11-13-H03 ,At1g58080 ATP phosphoribosyl transferase 1 (ATP-PRT1) identical to ATP phosphoribosyl transferase GI:6683617 from [Arabidopsis thaliana]
1_900001_1200000					A	B	C	D	P	P'	N
	Cluster:3-1				3	213	12	4435	0.029519757	0.29519758	10
		RAFL07-08-I17	At1g04240 / auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3)		RAFL07-08-I17 ,At1g04240 auxin-responsive protein / indoleacetic acid-induced protein 3 (IAA3) identical to SP|Q38822 Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes from this gene
		RAFL07-16-H10	At1g03930 / protein kinase (ADK1)		RAFL07-16-H10 ,At1g03930 protein kinase (ADK1) identical to dual specificity kinase 1 (ADK1) [Arabidopsis thaliana] gi|1216484|gb|AAB47968; supported by cDNA gi:18700076 and gi:1216483. Note: differences between cDNAs in the 11th exon, possibly due to errors or alternative splicing.
		RAFL05-18-O24	At1g04190 / tetratricopeptide repeat (TPR)-containing protein		At1g04190 ,RAFL05-18-O24 tetratricopeptide repeat (TPR)-containing protein low similarity to protein antigen LmSTI1 [Leishmania major] GI:1698880; contains Pfam profile PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come from this gene
	Cluster:3-0				3	230	12	4418	0.03588357	0.3588357	10
		RAFL07-17-M04	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL07-17-M04 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
		RAFL05-08-M23	At1g03860 / prohibitin 2 -related		RAFL05-08-M23 ,At1g03860 prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain / Band 7 family
		RAFL06-07-J21	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL06-07-J21 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
5_23610001_23640000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	2	4629	2.7145064E-4	8.1435195E-4	3
		RAFL09-06-F09	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL09-06-F09 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL08-08-I08	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL08-08-I08 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
1_27720001_27750000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
3_4800001_4830000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
	Cluster:0-2				1	78	2	4582	0.049979966	0.09995993	2
		RAFL06-07-N01	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL06-07-N01 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
1_7590001_7620000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-08-E02	At1g21680 / expressed protein		RAFL05-08-E02 ,At1g21680 expressed protein similar to TolB protein precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and gb|N65244 come from this gene
4_930001_960000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-04-B19	At4g02150 / importin alpha-2 subunit		At4g02150 ,RAFL05-04-B19 importin alpha-2 subunit identical to importin alpha-2 subunit (Karyopherin alpha-2 subunit) (KAP alpha) SP:O04294 from [Arabidopsis thaliana]
5_25680001_25710000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-11-L03	At5g65010 / asparagine synthetase (gb|AAC72837.1)		At5g65010 ,RAFL09-11-L03 asparagine synthetase 2 (ASN2) identical to asparagine synthetase (ASN2) [Arabidopsis thaliana] GI:3859536
5_24750001_24780000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL04-18-B07	At5g62350 / pectinesterase family		RAFL04-18-B07 ,At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor; FL5-2I22 mRNA for DC 1.2 homolog, partial cds GI:11127598
1_18600001_18900000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	6	4578	0.0074280417	0.05199629	7
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
1_25200001_25500000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	4	4550	0.007638084	0.038190417	5
		RAFL05-01-L22	At1g68620 / expressed protein		RAFL05-01-L22 ,At1g68620 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
		RAFL05-04-N11	At1g68530 / very-long-chain fatty acid condensing enzyme (CUT1)		At1g68530 ,RAFL05-04-N11 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999))
1_12360001_12390000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-07-M02	At1g34030 / 40S ribosomal protein S18 (RPS18B)		At1g34030 ,RAFL05-07-M02 40S ribosomal protein S18 (RPS18B) similar to ribosomal protein S18 GI:38422 from [Homo sapiens]
1_25500001_25800000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	7	4547	0.017509907	0.14007926	8
		RAFL09-13-J20	At1g69410 / Eukaryotic initiation factor 5A -related		RAFL09-13-J20 ,At1g69410 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
		RAFL08-11-M15	At1g69360 / expressed protein		RAFL08-11-M15 ,At1g69360 expressed protein
5_3300001_3330000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-N21	At5g10540 / oligopeptidase A - like protein		At5g10540 ,RAFL05-09-N21 peptidase M3 family protein / thimet oligopeptidase family protein similar to SP|P27237 Oligopeptidase A (EC 3.4.24.70) {Salmonella typhimurium}; contains Pfam profile PF01432: Peptidase family M3
4_990001_1020000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	1	4630	1.3631E-4	2.7262E-4	2
		RAFL08-10-G22	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		RAFL08-10-G22 ,At4g02280 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
		RAFL05-18-M07	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At4g02280 ,RAFL05-18-M07 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
1_19050001_19080000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-10-I16	At1g52300 / 60S ribosomal protein L37 (RPL37B)		RAFL04-10-I16 ,At1g52300 60S ribosomal protein L37 (RPL37B) similar to SP:Q43292 from [Arabidopsis thaliana]
5_2160001_2190000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-10-L09	At5g07030 / nucleoid DNA-binding-related protein		RAFL04-10-L09 ,At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease
1_15780001_15810000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	2	4637	0.015364647	0.04609394	3
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
4_7620001_7650000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-16-L21	At4g15210 / glycosyl hydrolase family 14 (beta-amylase)		At4g15210 ,RAFL05-16-L21 beta-amylase (BMY1) / 1,4-alpha-D-glucan maltohydrolase identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) SP:P25853 [Arabidopsis thaliana]
5_20190001_20220000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-09-K04	At5g50360 / expressed protein		At5g50360 ,RAFL05-09-K04 expressed protein
1_19200001_19230000					A	B	C	D	P	P'	N
	Cluster:10-0				4	20	0	4639	5.401052E-10	5.401052E-10	1
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
3_19620001_19650000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	2	4512	0.0058334814	0.017500445	3
		RAFL07-10-A19	At3g52960 / peroxiredoxin - like protein		RAFL07-10-A19 ,At3g52960 peroxiredoxin type 2, putative similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL05-13-O17	At3g52960 / peroxiredoxin - like protein		RAFL05-13-O17 ,At3g52960 peroxiredoxin type 2, putative similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
2_19200001_19500000					A	B	C	D	P	P'	N
	Cluster:4-2				3	132	17	4511	0.018863719	0.24522835	13
		RAFL04-15-F08	At2g47080 / unknown similar to AGI		At2g47080 ,RAFL04-15-F08 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-15-F08
		RAFL02-05-J09	At2g47110 / ubiquitin extension protein (UBQ6)/40S ribosomal protein S27A (RPS27aB)		RAFL02-05-J09 ,At2g47110 ubiquitin extension protein 6 (UBQ6) / 40S ribosomal protein S27A (RPS27aB) identical to GI:166936
		RAFL05-04-F08	At2g47610 / 60S ribosomal protein L7A (RPL7aA)		RAFL05-04-F08 ,At2g47610 60S ribosomal protein L7A (RPL7aA)
5_16110001_16140000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-E08	At5g40950 / 50S ribosomal protein L27, chloroplast precursor (CL27)		At5g40950 ,RAFL07-08-E08 50S ribosomal protein L27, chloroplast, putative (RPL27) identical to SP|Q9FLN4 ribosomal protein L27, chloroplast precursor {Arabidopsis thaliana}; similar to SP|P30155 50S ribosomal protein L27, chloroplast precursor (CL27) {Nicotiana tabacum}
3_3690001_3720000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL07-09-F11	At3g11700 / expressed protein		RAFL07-09-F11 ,At3g11700 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein contains Pfam profile PF02469: Fasciclin domain
5_23010001_23040000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL09-13-M13	At5g57560 / xyloglucan endotransglycosylase (TCH4)		RAFL09-13-M13 ,At5g57560 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (TCH4) identical to xyloglucan endotransglycosylase TCH4 protein GI:886116
2_1260001_1290000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL09-14-N06	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL09-14-N06 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL05-03-E03	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL05-03-E03 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
4_14220001_14250000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL05-09-I19	At4g31500 / cytochrome P450 83B1		At4g31500 ,RAFL05-09-I19 cytochrome P450 83B1 (CYP83B1) Identical to Cytochrome P450 (SP:O65782 )[Arabidopsis thaliana]
1_29790001_29820000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	1	4397	0.009291402	0.018582804	2
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
5_8940001_8970000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-10-J20	At5g25770 / expressed protein		RAFL11-10-J20 ,At5g25770 expressed protein
3_22860001_22890000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-02-M09	At3g61820 / expressed protein		At3g61820 ,RAFL05-02-M09 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
1_22080001_22110000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
2_15570001_15600000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	3	4510	0.009643516	0.038574062	4
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
5_21000001_24000000					A	B	C	D	P	P'	N
	Cluster:8-0				10	99	132	4422	0.0016193746	0.043723114	27
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-15-K08	At5g57655 / expressed protein		At5g57655 ,RAFL05-15-K08 xylose isomerase family protein contains similarity to Xylose isomerase (EC 5.3.1.5) (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-17-B18	At5g56750 / Ndr family		RAFL07-17-B18 ,At5g56750 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus}; contains Pfam profile PF03096: Ndr family
		RAFL09-09-G23	At5g58730 / pfkB type carbohydrate kinase protein family		RAFL09-09-G23 ,At5g58730 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
4_8760001_8790000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
3_23220001_23250000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	4	4377	0.046489924	0.23244964	5
		RAFL09-12-M15	At3g62830 / NAD-dependent epimerase/dehydratase family		At3g62830 ,RAFL09-12-M15 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2
		RAFL05-17-G20	At3g62830 / NAD-dependent epimerase/dehydratase family		At3g62830 ,RAFL05-17-G20 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2
4_16080001_16110000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-13-G16	At4g36210 / expressed protein		RAFL11-13-G16 ,At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726)
1_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:10-0				2	22	55	4584	0.034115184	0.81876445	24
		RAFL05-16-F03	At1g49450 / transducin / WD-40 repeat protein family		RAFL05-16-F03 ,At1g49450 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to En/Spm-like transposon protein GI:2739374 from [Arabidopsis thaliana]; no characterized homologs
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
	Cluster:0-1				4	102	53	4504	0.03970353	0.9528847	24
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
5_24420001_24450000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-18-J12	At5g61450 / expressed protein		RAFL04-18-J12 ,At5g61450 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus]
2_13710001_13740000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-16-I19	At2g32480 / protease, putative		RAFL04-16-I19 ,At2g32480 membrane-associated zinc metalloprotease, putative similar to Hypothetical zinc metalloprotease All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.} Pfam PF00595: PDZ domain (Also known as DHR or GLGF); contains TIGRFAM TIGR00054: membrane-associated zinc metalloprotease, putative
2_13920001_13950000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-08-M06	At2g32970 / expressed protein		At2g32970 ,RAFL07-08-M06 expressed protein
1_6780001_6810000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-E15	At1g19660 / expressed protein		At1g19660 ,RAFL05-07-E15 wound-responsive family protein similar to wound inducive gene (GI:8096273)[Nicotiana tabacum]
4_10710001_10740000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-O18	At4g22240 / plastid-lipid associated protein (PAP), putative		At4g22240 ,RAFL05-14-O18 plastid-lipid associated protein PAP, putative similar to plastid-lipid associated proteins PAP2 [Brassica rapa] GI:14248550 GI:14248556; contains Pfam profile PF04755: PAP_fibrillin
1_19080001_19110000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
1_25710001_25740000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-11-M15	At1g69360 / expressed protein		RAFL08-11-M15 ,At1g69360 expressed protein
5_16710001_16740000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	2	4625	3.443902E-4	0.0010331706	3
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
1_15180001_15210000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-L21	At1g41880 / 60S ribosomal protein L35a (RPL35aB)		RAFL04-15-L21 ,At1g41880 60S ribosomal protein L35a (RPL35aB) identical to GB:CAB81600 from [Arabidopsis thaliana]
3_21090001_21120000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-F20	At3g57020 / strictosidine synthase-related		RAFL05-05-F20 ,At3g57020 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
5_5100001_5400000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	13	4403	0.049289726	0.542187	11
		RAFL05-17-J22	At5g16110 / expressed protein		At5g16110 ,RAFL05-17-J22 expressed protein hypothetical protein T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
		RAFL09-15-H19	At5g16120 / hydrolase, alpha/beta fold family		At5g16120 ,RAFL09-15-H19 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL05-21-E21	At5g15860 / Carboxylesterase-related protein		RAFL05-21-E21 ,At5g15860 expressed protein
1_10230001_10260000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL11-09-D24	At1g29310 / flower pigmentation protein ATAN11		At1g29310 ,RAFL11-09-D24 protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI:3057044; contains Pfam profile PF00344: eubacterial secY protein
4_10440001_10470000					A	B	C	D	P	P'	N
	Cluster:5-0				3	74	1	4585	1.7120063E-5	3.4240125E-5	2
		RAFL06-08-A17	At4g21650 / subtilisin proteinase - like		RAFL06-08-A17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-13-C17	At4g21650 / subtilisin proteinase - like		RAFL09-13-C17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-06-N06	At4g21650 / subtilisin proteinase - like		RAFL09-06-N06 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
4_5160001_5190000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-12-D15	At4g09900 / hydrolase family		RAFL05-12-D15 ,At4g09900 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
5_20760001_20790000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-13-A13	At5g51830 / fructokinase, putative		At5g51830 ,RAFL04-13-A13 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
3_19890001_19920000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-B16	At3g53710 / ARF GAP-like zinc finger-containing protein (ZIGA2)		At3g53710 ,RAFL07-08-B16 ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like zinc finger-containing protein ZIGA2 from GI:10441356 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP)
3_3600001_3900000					A	B	C	D	P	P'	N
	Cluster:6-1				4	311	15	4333	0.035288595	0.38817453	11
		RAFL07-08-P17	At3g12010 / expressed protein		RAFL07-08-P17 ,At3g12010 expressed protein contains Prosite PS00626: Regulator of chromosome condensation (RCC1) signature 2
		RAFL09-10-I17	At3g11530 / expressed protein		At3g11530 ,RAFL09-10-I17 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55
		RAFL05-17-B11	At3g11930 / ethylene-responsive protein -related		At3g11930 ,RAFL05-17-B11 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
		RAFL02-07-E18	At3g11930 / ethylene-responsive protein -related		RAFL02-07-E18 ,At3g11930 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
4_11520001_11550000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-14-G13	At4g24220 / expressed protein		RAFL07-14-G13 ,At4g24220 expressed protein protein induced upon wounding - Arabidopsis thaliana, PID:e257749
2_17760001_17790000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL07-11-G08	At2g42840 / protodermal factor 1		At2g42840 ,RAFL07-11-G08 protodermal factor 1 (PDF1) identical to protodermal factor 1 [Arabidopsis thaliana] gi|4929130|gb|AAD33869
3_5820001_5850000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL03-03-I07	At3g17100 / bHLH protein		At3g17100 ,RAFL03-03-I07 expressed protein
4_8340001_8370000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	1	4429	4.7469826E-4	9.493965E-4	2
		RAFL09-09-O07	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL09-09-O07 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL06-16-N16	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL06-16-N16 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL07-08-A13	At4g16660 / heat shock protein hsp70, putative		RAFL07-08-A13 ,At4g16660 heat shock protein 70, putative / HSP70, putative
4_12600001_12900000					A	B	C	D	P	P'	N
	Cluster:10-1				2	41	19	4601	0.0156107405	0.23416111	15
		RAFL09-15-E01	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL09-15-E01 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
		RAFL05-21-C17	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL05-21-C17 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
1_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	4	4419	0.034489654	0.13795862	4
		RAFL05-08-C05	At1g47420 / expressed protein		At1g47420 ,RAFL05-08-C05 expressed protein identical to hypothetical protein GB:AAD46040 GI:5668814 from [Arabidopsis thaliana]
		RAFL05-19-J05	At1g47260 / transferase hexapeptide repeat family		At1g47260 ,RAFL05-19-J05 bacterial transferase hexapeptide repeat-containing protein contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats)
	Cluster:7-1				2	263	4	4394	0.041455213	0.16582085	4
		RAFL06-13-N05	At1g47240 / NRAMP metal ion transporter 2, putative (NRAMP2)		RAFL06-13-N05 ,At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563
		RAFL09-09-J08	At1g47530 / ripening regulated protein, putative		RAFL09-09-J08 ,At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
1_7800001_8100000					A	B	C	D	P	P'	N
	Cluster:7-1				5	260	14	4384	0.0034332294	0.034332294	10
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL06-08-E17	At1g22840 / cytochrome C -related		RAFL06-08-E17 ,At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
5_4590001_4620000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-09-E08	At5g14320 / 30S ribosomal protein S13, chloroplast precursor (CS13)		At5g14320 ,RAFL04-09-E08 30S ribosomal protein S13, chloroplast (CS13) ribosomal protein S13 precursor, chloroplast Arabidopsis thaliana, PIR:S59594; identical to cDNA ribosomal protein S13 GI:1515106
5_15600001_15900000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	3	4345	0.039689664	0.15875866	4
		RAFL09-06-P04	At5g39730 / avirulence induced gene (AIG) - like protein		At5g39730 ,RAFL09-06-P04 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana}
		RAFL05-14-O08	At5g39950 / thioredoxin H-type 2 (TRX-H-2)		At5g39950 ,RAFL05-14-O08 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI:992963
4_14430001_14460000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-03-O13	At4g32020 / expressed protein		At4g32020 ,RAFL05-03-O13 expressed protein NuLL
5_23130001_23160000					A	B	C	D	P	P'	N
	Cluster:4-1				3	307	3	4350	0.005004816	0.020019265	4
		RAFL11-06-M12	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL11-06-M12 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL07-15-E16	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL07-15-E16 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL07-11-C15	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		At5g57870 ,RAFL07-11-C15 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
4_9900001_10200000					A	B	C	D	P	P'	N
	Cluster:6-0				3	137	6	4517	0.001948424	0.013638968	7
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
1_11100001_11130000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-14-E08	At1g31130 / expressed protein		RAFL05-14-E08 ,At1g31130 expressed protein
4_420001_450000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-12-H13	At4g01020 / helicase domain-containing protein		At4g01020 ,RAFL05-12-H13 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain
2_11730001_11760000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-17-A13	At2g27690 / cytochrome P450, putative		RAFL05-17-A13 ,At2g27690 cytochrome P450, putative similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13877668
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-04-M06	At2g27680 / aldo/keto reductase family		At2g27680 ,RAFL05-04-M06 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
3_11100001_11130000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL02-03-B07	At3g29160 / Snf1-related protein kinase KIN11 (AKIN11)		RAFL02-03-B07 ,At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI:1729444 from [Arabidopsis thaliana]
4_600001_630000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-11-P20	At4g01480 / inorganic phosphatase -related		RAFL07-11-P20 ,At4g01480 inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase
4_16950001_16980000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	3	4350	0.038523052	0.15409221	4
		RAFL04-09-A19	At4g38510 / probable H+-transporting ATPase		RAFL04-09-A19 ,At4g38510 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain
		RAFL07-17-H08	At4g38510 / probable H+-transporting ATPase		RAFL07-17-H08 ,At4g38510 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain
4_1200001_1230000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL07-15-A19	At4g02770 / photosystem I reaction center subunit II precursor -related		RAFL07-15-A19 ,At4g02770 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD1) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
5_17340001_17370000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
2_19410001_19440000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL05-16-J06	At2g47450 / chlorophyll a/b binding protein harvesting-organelle specific protein CAO		At2g47450 ,RAFL05-16-J06 chloroplast signal recognition particle component (CAO) nearly identical to CAO [Arabidopsis thaliana] GI:4102582
3_20550001_20580000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-20-E01	At3g55430 / glycosyl hydrolase family 17 (beta-1,3-glucanase)		At3g55430 ,RAFL05-20-E01 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative similar to beta-1,3 glucanase GI:7414433 from [Pisum sativum]; contains Pfam profile PF00332: Glycosyl hydrolases family 17
5_1590001_1620000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-12-G11	At5g05370 / ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C)-related protein (gb|AAF19563.1)		At5g05370 ,RAFL07-12-G11 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative strong similarity to SP|P46269 Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C (EC 1.10.2.2) (Ubiquinol-cytochrome C reductase complex 8.2 kDa protein) {Solanum tuberosum}
5_16050001_16080000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-16-I11	At5g40810 / cytochrome c1 precursor		At5g40810 ,RAFL05-16-I11 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
2_5400001_5700000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	4	4426	0.032636177	0.16318089	5
		RAFL05-18-J16	At2g13360 / alanine-glyoxylate aminotransferase		RAFL05-18-J16 ,At2g13360 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL05-10-L06	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL05-10-L06 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
5_15150001_15180000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-01-F03	At5g38590 / F-box protein family		At5g38590 ,RAFL05-01-F03 F-box family protein contains F-box domain Pfam:PF00646
3_21000001_21300000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	17	4614	0.0072546974	0.11607516	16
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
1_27270001_27300000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
2_7710001_7740000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-O16	At2g17870 / glycine-rich, zinc-finger DNA-binding protein -related		RAFL05-08-O16 ,At2g17870 cold-shock DNA-binding family protein contains Pfam domains, PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle
5_3900001_4200000					A	B	C	D	P	P'	N
	Cluster:1-1				3	102	15	4543	0.007078421	0.09201947	13
		RAFL09-12-K02	At5g13120 / peptidyl-prolyl isomerase protein		At5g13120 ,RAFL09-12-K02 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
		RAFL08-17-F04	At5g13010 / RNA helicase, putative		At5g13010 ,RAFL08-17-F04 RNA helicase, putative similar to DEAH-box RNA helicase [Chlamydomonas reinhardtii] GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL09-09-H14	At5g12250 / tubulin beta-6 chain (TUB6)		RAFL09-09-H14 ,At5g12250 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
	Cluster:4-2				3	132	15	4513	0.014082317	0.18307012	13
		RAFL06-07-J02	At5g12150 / expressed protein		RAFL06-07-J02 ,At5g12150 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein weak similarity to glucocorticoid receptor DNA binding factor 1 [Canis familiaris] GI:23266717; contains Pfam profiles PF00169: PH domain, PF00620: RhoGAP domain
		RAFL05-03-O05	At5g12260 / expressed protein		RAFL05-03-O05 ,At5g12260 expressed protein
		RAFL04-14-K23	At5g12370 / expressed protein		At5g12370 ,RAFL04-14-K23 exocyst complex component Sec10-related low similarity to SP|O00471 Exocyst complex component Sec10 (hSec10) {Homo sapiens}
1_19770001_19800000					A	B	C	D	P	P'	N
	Cluster:9-0				4	28	2	4629	2.7153972E-8	8.146192E-8	3
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
5_14760001_14790000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL02-08-J13	At5g37830 / 5-oxoprolinase -related protein		RAFL02-08-J13 ,At5g37830 hydantoinase/oxoprolinase family protein contains Pfam profiles: PF02538 hydantoinase B/oxoprolinase, PF01968 hydantoinase/oxoprolinase, PF05378 hydantoinase/oxoprolinase N-terminal region
1_17940001_17970000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL03-10-E10	At1g49590 / expressed protein		RAFL03-10-E10 ,At1g49590 formin-binding protein-related similar to formin binding protein 21 (GI:3550080) [Homo sapiens]; similar to formin binding protein 21 (GI:3550077) [Mus musculus]; similar to Dinap1-interacting protein 1 (GI:8745458) [Crypthecodinium cohnii]
3_22740001_22770000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL06-12-E09	At3g61430 / plasma membrane intrinsic protein 1A		At3g61430 ,RAFL06-12-E09 plasma membrane intrinsic protein 1A (PIP1A) / aquaporin PIP1.1 (PIP1.1) (AQ1) identical to plasma membrane intrinsic protein 1A SP:P43285 from [Arabidopsis thaliana]
5_21240001_21270000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	5	4622	0.04546111	0.27276668	6
		RAFL07-09-P04	At5g53140 / protein phosphatase 2C (PP2C), putative		RAFL07-09-P04 ,At5g53140 protein phosphatase 2C, putative / PP2C, putative
4_10290001_10320000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-17-G17	At4g21280 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL05-17-G17 ,At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) identical to SP|Q9XFT3 Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
1_29340001_29370000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-08-D11	At1g78970 / lupeol synthase (LUP1)		At1g78970 ,RAFL08-08-D11 lupeol synthase (LUP1) / 2,3-oxidosqualene-triterpenoid cyclase identical to lupeol synthase GI:1762150 from [Arabidopsis thaliana], 2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis thaliana] GI:2738027; contains Pfam profile PF00432: Prenyltransferase and squalene oxidase repeat; contains TIGRfam profile TIGR01787: squalene/oxidosqualene cyclases; identical to cDNA 2,3-oxidosqualene-triterpenoid cyclase GI:2738026
1_22710001_22740000					A	B	C	D	P	P'	N
	Cluster:2-0				6	144	1	4512	6.8456516E-9	1.3691303E-8	2
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
4_16770001_16800000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-04-O06	At4g37930 / glycine hydroxymethyltransferase like protein		At4g37930 ,RAFL05-04-O06 glycine hydroxymethyltransferase / serine hydroxymethyltransferase / serine/threonine aldolase (SHM1) identical to serine hydroxymethyl transferase [Arabidopsis thaliana] GI:6899945
2_16710001_16740000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL11-12-C17	At2g40140 / CCCH-type zinc finger protein -related		At2g40140 ,RAFL11-12-C17 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
2_19110001_19140000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-20-M16	At2g46680 / homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7)		At2g46680 ,RAFL05-20-M16 homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 identical to homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7) (SP:P46897) [Arabidopsis thaliana];
1_3240001_3270000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-16-N03	At1g09970 / leucine-rich repeat transmembrane protein kinase, putative		RAFL08-16-N03 ,At1g09970 leucine-rich repeat transmembrane protein kinase, putative Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene isoform contains a TG acceptor site at intron.
1_1200001_1230000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL05-18-P15 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL07-15-M07 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
1_19350001_19380000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-A21	At1g53090 / WD-40 repeat protein family		RAFL05-08-A21 ,At1g53090 WD-40 repeat family protein / phytochrome A-related contains 7 WD-40 repeats (PF00400) (1 below cutoff); similar to phytochrome A supressor spa1 (GI:4809171) [Arabidopsis thaliana]
1_3600001_3900000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	8	4591	0.0077741425	0.06219314	8
		RAFL07-18-O08	At1g11210 / expressed protein		At1g11210 ,RAFL07-18-O08 expressed protein contains similarity to cotton fiber expressed protein 1 [Gossypium hirsutum] gi|3264828|gb|AAC33276
		RAFL07-09-F22	At1g11260 / glucose transporter		At1g11260 ,RAFL07-09-F22 glucose transporter (STP1) nearly identical to glucose transporter GB:P23586 SP|P23586 from [Arabidopsis thaliana]
	Cluster:8-1				2	160	8	4493	0.044944704	0.35955763	8
		RAFL05-01-K10	At1g11480 / expressed protein		RAFL05-01-K10 ,At1g11480 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
		RAFL05-19-M23	At1g11480 / expressed protein		At1g11480 ,RAFL05-19-M23 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
4_17280001_17310000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-G24	At4g39400 / brassinosteroid insensitive 1 (BRI1)		RAFL07-12-G24 ,At4g39400 brassinosteroid insensitive 1 (BRI1) identical to GI:2392895
3_8850001_8880000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-19-J04	At3g24430 / mrp protein -related		RAFL05-19-J04 ,At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function
5_23640001_23670000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-04-J20	At5g59320 / lipid transfer protein 3 (LTP 3)		RAFL05-04-J20 ,At5g59320 lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
1_1200001_1500000					A	B	C	D	P	P'	N
	Cluster:7-1				4	261	10	4388	0.0064861733	0.05837556	9
		RAFL04-20-P06	At1g05170 / galactosyltransferase family		RAFL04-20-P06 ,At1g05170 galactosyltransferase family protein
		RAFL06-14-H20	At1g04850 / expressed protein		RAFL06-14-H20 ,At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain
		RAFL08-10-J10	At1g04990 / zinc finger protein 2 -related		RAFL08-10-J10 ,At1g04990 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL08-12-O19	At1g04690 / potassium channel protein, putative		RAFL08-12-O19 ,At1g04690 potassium channel protein, putative nearly identical to K+ channel protein [Arabidopsis thaliana] GI:1063415; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
	Cluster:2-1				3	241	11	4408	0.033551577	0.3019642	9
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL05-18-P15 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
		RAFL11-10-E14	At1g05010 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) (ethylene-forming enzyme) (EFE)		At1g05010 ,RAFL11-10-E14 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1) Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL07-15-M07 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
5_25050001_25080000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL07-11-G07	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL07-11-G07 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
		RAFL04-10-G08	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL04-10-G08 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
5_23400001_23430000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL07-12-C13	At5g58620 / zinc finger transcription factor-related protein		At5g58620 ,RAFL07-12-C13 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
3_18720001_18750000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-I03	At3g50440 / hydrolase, alpha/beta fold family		RAFL05-16-I03 ,At3g50440 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
5_15300001_15600000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
5_8310001_8340000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-09-D16	At5g24420 / 6-phosphogluconolactonase-related protein		At5g24420 ,RAFL04-09-D16 glucosamine/galactosamine-6-phosphate isomerase-related contains weak similarity to Swiss-Prot:O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) [Homo sapiens]
3_9600001_9900000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	9	4514	0.04121896	0.37097064	9
		RAFL06-15-H18	At3g26740 / light regulated protein -related		At3g26740 ,RAFL06-15-H18 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
		RAFL05-02-K03	At3g26740 / light regulated protein -related		At3g26740 ,RAFL05-02-K03 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
3_3720001_3750000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	1	4352	0.012636807	0.025273614	2
		RAFL02-06-B01	At3g11830 / chaperonin, putative		RAFL02-06-B01 ,At3g11830 chaperonin, putative similar to SWISS-PROT:P80313 T-complex protein 1, eta subunit (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL05-07-C13	At3g11800 / expressed protein		At3g11800 ,RAFL05-07-C13 expressed protein
3_10530001_10560000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL08-19-G11	At3g28270 / At14a		At3g28270 ,RAFL08-19-G11 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
5_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:1-2				15	159	148	4341	9.880872E-4	0.028654527	29
		RAFL07-18-K03	At5g11880 / diaminopimelate decarboxylase - like protein		At5g11880 ,RAFL07-18-K03 diaminopimelate decarboxylase, putative / DAP carboxylase, putative similar to diaminopimelate decarboxylase [Arabidopsis thaliana] GI:6562332; contains Pfam profiles PF02784: Pyridoxal-dependent decarboxylase pyridoxal binding domain, PF00278: Pyridoxal-dependent decarboxylase C-terminal sheet domain
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL09-07-P20	At5g15350 / plastocyanin-like domain containing protein		At5g15350 ,RAFL09-07-P20 plastocyanin-like domain-containing protein contains plastocyanin-like domain Pfam:PF02298
		RAFL09-10-I03	At5g13930 / chalcone synthase (naringenin-chalcone synthase)		At5g13930 ,RAFL09-10-I03 chalcone synthase / naringenin-chalcone synthase identical to SP|P13114
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-15-L15	At5g12250 / tubulin beta-6 chain (TUB6)		At5g12250 ,RAFL09-15-L15 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL05-07-G14	At5g16400 / thioredoxin, putative		At5g16400 ,RAFL05-07-G14 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin
		RAFL06-11-B12	At5g10840 / endomembrane protein 70, putative		RAFL06-11-B12 ,At5g10840 endomembrane protein 70, putative TM4 family;
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K24	At5g12860 / oxoglutarate/malate translocator, putative		RAFL11-01-K24 ,At5g12860 oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-15-J04	At5g11480 / GTP-binding protein -related		RAFL06-15-J04 ,At5g11480 expressed protein
5_8820001_8850000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL04-17-N17	At5g25460 / expressed protein		At5g25460 ,RAFL04-17-N17 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
2_6330001_6360000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-18-H16	At2g14910 / expressed protein		RAFL04-18-H16 ,At2g14910 expressed protein
1_23670001_23700000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	1	4566	0.0012416516	0.0024833032	2
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
1_2700001_3000000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	12	4587	0.015175772	0.16693349	11
		RAFL09-16-N17	At1g08930 / ERD6 protein		RAFL09-16-N17 ,At1g08930 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
		RAFL05-18-E19	At1g08930 / ERD6 protein		At1g08930 ,RAFL05-18-E19 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
2_18000001_18030000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-12-G16	At2g43570 / glycosyl hydrolase family 19 (chitinase)		At2g43570 ,RAFL04-12-G16 chitinase, putative similar to chitinase class IV GI:722272 from [Brassica napus]
2_11220001_11250000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-08-I12	At2g26530 / AR781, similar to yeast pheromone receptor		RAFL07-08-I12 ,At2g26530 expressed protein
5_1650001_1680000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-03-O21	At5g05600 / oxidoreductase, 2OG-Fe(II) oxygenase family		RAFL05-03-O21 ,At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Citrus unshiu][gi:4126403], leucoanthocyanidin dioxygenase [Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-15-N04	At5g05580 / omega-3 fatty acid desaturase, chloroplast precursor (FAD8)		At5g05580 ,RAFL07-15-N04 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive (FAD8) identical to SP:48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) {Arabidopsis thaliana}; contains Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI:1030694
5_6780001_6810000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	3	4510	0.009643516	0.028930547	3
		RAFL05-15-M21	At5g20160 / ribosomal protein L7Ae family		At5g20160 ,RAFL05-15-M21 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
		RAFL06-16-O09	At5g20150 / ids4-related protein		RAFL06-16-O09 ,At5g20150 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profile PF03105: SPX domain
	Cluster:4-1				2	308	3	4350	0.038523052	0.11556916	3
		RAFL06-11-L14	At5g20180 / ribosomal protein L36-related		At5g20180 ,RAFL06-11-L14 ribosomal protein L36 family protein contains Pfam profile: PF00444 ribosomal protein L36
		RAFL05-21-B19	At5g20090 / expressed protein		At5g20090 ,RAFL05-21-B19 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041)
1_27900001_28200000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	12	4598	0.010570335	0.105703354	10
		RAFL04-15-A17	At1g75350 / chloroplast 50S ribosomal protein L31 -related		RAFL04-15-A17 ,At1g75350 ribosomal protein L31 family protein similar to SP:O46917 from [Guillardia theta]
		RAFL04-15-F10	At1g75680 / glycosyl hydrolase family 9		At1g75680 ,RAFL04-15-F10 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GB:AAC12685 GI:3025470 from [Pinus radiata]
	Cluster:4-0				3	237	11	4412	0.03215115	0.3215115	10
		RAFL07-10-E01	At1g75670 / expressed protein		RAFL07-10-E01 ,At1g75670 expressed protein similar to DNA-dependent RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43) (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
		RAFL02-09-B24	At1g75340 / expressed protein		At1g75340 ,RAFL02-09-B24 zinc finger (CCCH-type) family protein weak similarity to Nucleoporin NUP42 (Nuclear pore protein NUP42) (Swiss-Prot:P49686) [Saccharomyces cerevisiae]; contains Pfam profile PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL05-03-A24	At1g76030 / vacuolar ATP synthase subunit B		RAFL05-03-A24 ,At1g76030 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit identical to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}
	Cluster:0-1				2	104	12	4545	0.038989853	0.38989854	10
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
1_10800001_11100000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	4	4377	0.0063829273	0.031914636	5
		RAFL04-10-M14	At1g30890 / expressed protein		At1g30890 ,RAFL04-10-M14 integral membrane HRF1 family protein contains Pfam domain PF03878: Hrf1 family
		RAFL05-09-F05	At1g30630 / coatomer protein epsilon subunit (COPE) family		RAFL05-09-F05 ,At1g30630 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus; ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this gene
		RAFL04-09-I09	At1g30970 / zinc finger protein -related		At1g30970 ,RAFL04-09-I09 zinc finger (C2H2 type) family protein contains Pfam domain PF00096: Zinc finger, C2H2 type
2_15930001_15960000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL09-14-H22	At2g38170 / calcium exchanger (CAX1)		At2g38170 ,RAFL09-14-H22 calcium exchanger (CAX1) identical to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563
5_5130001_5160000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O12	At5g15780 / proline-rich protein		At5g15780 ,RAFL06-08-O12 pollen Ole e 1 allergen and extensin family protein contains Pfam profile PF01190: Pollen proteins Ole e I family
4_16740001_16770000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-14-G07	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		At4g37870 ,RAFL09-14-G07 phosphoenolpyruvate carboxykinase [ATP], putative / PEP carboxykinase, putative / PEPCK, putative similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase
		RAFL05-14-F18	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		RAFL05-14-F18 ,At4g37870 phosphoenolpyruvate carboxykinase [ATP], putative / PEP carboxykinase, putative / PEPCK, putative similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase
1_150001_180000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-17-B13	At1g01470 / expressed protein		RAFL05-17-B13 ,At1g01470 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P46518 Late embryogenesis abundant protein Lea14-A {Gossypium hirsutum}; contains Pfam profile PF03168: Late embryogenesis abundant protein
5_23700001_23730000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL06-16-O23	At5g59550 / expressed protein		RAFL06-16-O23 ,At5g59550 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
3_3000001_3030000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	3	4413	0.025126193	0.10050477	4
		RAFL04-16-N13	At3g09840 / transitional endoplasmic reticulum ATPase -related		At3g09840 ,RAFL04-16-N13 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}
		RAFL09-09-B17	At3g09850 / expressed protein		At3g09850 ,RAFL09-09-B17 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain
1_25020001_25050000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-16-P12	At1g67740 / F12A21.13		RAFL05-16-P12 ,At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY) / L-arginine metabolising enzyme identical to SP:O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana]
5_4800001_4830000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL03-01-B05	At5g14910 / heavy-metal-associated domain-containing protein		RAFL03-01-B05 ,At5g14910 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain
5_4290001_4320000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	3	4345	0.005238493	0.015715478	3
		RAFL07-09-C22	At5g13420 / transaldolase - like protein		RAFL07-09-C22 ,At5g13420 transaldolase, putative similar to transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
		RAFL05-11-L11	At5g13440 / ubiquinol--cytochrome c reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13440 ,RAFL05-11-L11 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
		RAFL02-02-L02	At5g13430 / ubiquinol--cytochrome C reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13430 ,RAFL02-02-L02 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]; non-consensus AT acceptor splice site at exon 2
	Cluster:5-2				2	124	4	4533	0.0101192035	0.030357612	3
		RAFL05-12-K10	At5g13460 / expressed protein		At5g13460 ,RAFL05-12-K10 calmodulin-binding family protein low similarity to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif
		RAFL06-10-G23	At5g13400 / peptide transporter - like protein		RAFL06-10-G23 ,At5g13400 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
1_3630001_3660000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-15-O03	At1g10950 / endomembrane protein 70, putative		RAFL08-15-O03 ,At1g10950 endomembrane protein 70, putative
1_28050001_28080000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-15-F10	At1g75680 / glycosyl hydrolase family 9		At1g75680 ,RAFL04-15-F10 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GB:AAC12685 GI:3025470 from [Pinus radiata]
3_4590001_4620000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	6	4424	0.008266786	0.041333932	5
		RAFL06-08-N17	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL06-08-N17 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-J10	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL07-10-J10 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-F16	At3g13930 / acetyltransferase -related		At3g13930 ,RAFL07-10-F16 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
	Cluster:4-1				3	307	6	4347	0.018093722	0.09046861	5
		RAFL07-16-E16	At3g13930 / acetyltransferase -related		RAFL07-16-E16 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL09-12-A19	At3g13930 / acetyltransferase -related		RAFL09-12-A19 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL11-09-K08	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		At3g13920 ,RAFL11-09-K08 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
1_19560001_19590000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
4_14880001_14910000					A	B	C	D	P	P'	N
	Cluster:0-2				6	73	1	4583	1.3487995E-10	2.697599E-10	2
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
5_21150001_21180000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-12-D13	At5g52920 / pyruvate kinase, putative		RAFL09-12-D13 ,At5g52920 pyruvate kinase, putative similar to pyruvate kinase isozyme G, chloroplast precursor [Nicotiana tabacum] SWISS-PROT:Q40546
4_2100001_2130000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-12-C20	At4g04330 / expressed protein		RAFL04-12-C20 ,At4g04330 expressed protein
1_22860001_22890000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-E16	At1g62750 / elongation factor Tu family protein		RAFL04-15-E16 ,At1g62750 elongation factor Tu family protein similar to elongation factor G SP:P34811 [Glycine max (Soybean)]
5_26070001_26100000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-07-D07	At5g65930 / kinesin-like calmodulin-binding protein		At5g65930 ,RAFL05-07-D07 kinesin-like calmodulin-binding protein (ZWICHEL) identical to kinesin-like protein GI:2224925 from [Arabidopsis thaliana]
3_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:6-1				11	304	65	4283	0.016970566	0.4921464	29
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL05-16-J07	At3g46460 / ubiquitin-conjugating enzyme 13 (UBC13)		RAFL05-16-J07 ,At3g46460 ubiquitin-conjugating enzyme 13 (UBC13) E2; identical to gi:992706
		RAFL05-17-B12	At3g47250 / expressed protein		At3g47250 ,RAFL05-17-B12 expressed protein contains Pfam profile PF03140: Plant protein of unknown function
		RAFL05-07-N16	At3g44330 / expressed protein		RAFL05-07-N16 ,At3g44330 expressed protein
		RAFL05-10-H13	At3g46220 / expressed protein		RAFL05-10-H13 ,At3g46220 expressed protein
		RAFL05-15-F17	At3g45310 / cysteine proteinase AALP, putative		At3g45310 ,RAFL05-15-F17 cysteine proteinase, putative similar to AALP protein GI:7230640 from [Arabidopsis thaliana] and barley aleurain
	Cluster:7-2				4	60	72	4527	0.019808238	0.5744389	29
		RAFL04-17-K15	At3g45640 / mitogen-activated protein kinase (MAPK), putative (MPK3)		At3g45640 ,RAFL04-17-K15 mitogen-activated protein kinase, putative / MAPK, putative (MPK3) identical to mitogen-activated protein kinase homolog (AtMPK3)[Arabidopsis thaliana] SWISS-PROT:Q39023; PMID:12119167
		RAFL05-08-E01	At3g44630 / disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative		At3g44630 ,RAFL05-08-E01 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB
		RAFL04-17-L19	At3g44190 / pyridine nucleotide-disulphide oxidoreductase family		At3g44190 ,RAFL04-17-L19 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum [GI:472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain
		RAFL09-16-L17	At3g47960 / peptide transporter -related		At3g47960 ,RAFL09-16-L17 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
3_17100001_17130000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-02-O23	At3g46450 / SEC14 cytosolic factor, putative		RAFL05-02-O23 ,At3g46450 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI:|2739044) {Glycine max}
2_5610001_5640000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-H04	At2g13610 / ABC transporter family protein		At2g13610 ,RAFL05-09-H04 ABC transporter family protein
1_29700001_30000000					A	B	C	D	P	P'	N
	Cluster:7-1				4	261	14	4384	0.0165728	0.1823008	11
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL06-09-B20	At1g80400 / C3HC4-type zinc finger protein family		RAFL06-09-B20 ,At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus}; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
		RAFL09-16-B05	At1g79975 / expressed protein		At1g79975 ,RAFL09-16-B05 expressed protein
5_15000001_15300000					A	B	C	D	P	P'	N
	Cluster:0-0				11	25	7	4620	3.2917788E-20	2.633423E-19	8
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
1_4350001_4380000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	3	4427	0.02249133	0.08996532	4
		RAFL11-11-G19	At1g12820 / transport inhibitor response 1 (TIR1), putative		At1g12820 ,RAFL11-11-G19 transport inhibitor response protein, putative E3 ubiquitin ligase SCF complex F-box subunit; similar to transport inhibitor response 1 GI:2352492 from [Arabidopsis thaliana]
		RAFL04-17-E10	At1g12770 / pentatricopeptide (PPR) repeat-containing protein		At1g12770 ,RAFL04-17-E10 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase
3_1110001_1140000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-09-L03	At3g04240 / glycosyltransferase - related		At3g04240 ,RAFL09-09-L03 O-linked N-acetyl glucosamine transferase, putative similar to O-GlcNAc transferase, Homo sapiens [SP|O15294], Rattus norvegicus [SP|P56558]; contains Pfam profile PF00515: TPR Domain; identical to cDNA GI:18139886
1_26040001_26070000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-L07	At1g70100 / expressed protein		RAFL05-09-L07 ,At1g70100 expressed protein
3_3660001_3690000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-08-E07	At3g11630 / 2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein) -related		At3g11630 ,RAFL06-08-E07 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
2_17910001_17940000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL06-08-B14	At2g43290 / calmodulin-like protein (MSS3)		RAFL06-08-B14 ,At2g43290 calmodulin-like protein (MSS3) identical to calmodulin-like MSS3 from GI:9965747 [Arabidopsis thaliana]
5_24270001_24300000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-09-N10	At5g61060 / histone deacetylase - like		At5g61060 ,RAFL06-09-N10 histone deacetylase family protein similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens}; contains Pfam profile PF00850: Histone deacetylase family
5_21600001_21630000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
3_19260001_19290000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-10-L18	At3g51950 / RNA recognition motif (RRM) - containing protein		RAFL07-10-L18 ,At3g51950 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
4_2670001_2700000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL03-06-D05	At4g05180 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL03-06-D05 ,At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
5_4620001_4650000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-07-P17	At5g14370 / expressed protein		RAFL07-07-P17 ,At5g14370 expressed protein
1_19650001_19680000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-08-P09	At1g53750 / 26S proteasome AAA-ATPase subunit RPT1a		RAFL06-08-P09 ,At1g53750 26S proteasome AAA-ATPase subunit (RPT1a) similar to 26S proteasome ATPase subunit GI:1395190 from [Spinacia oleracea]
5_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	10	4420	0.024273654	0.24273655	10
		RAFL09-11-F01	At5g41685 / expressed protein		At5g41685 ,RAFL09-11-F01 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) identical to SP|Q9ASY8 Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) {Arabidopsis thaliana}
		RAFL04-13-A06	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-13-A06 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
		RAFL04-17-A10	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-17-A10 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
3_8940001_8970000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL08-11-J15	At3g24550 / protein kinase -related		RAFL08-11-J15 ,At3g24550 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
		RAFL11-07-N23	At3g24550 / protein kinase -related		RAFL11-07-N23 ,At3g24550 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
2_13110001_13140000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-12-E19	At2g30950 / FtsH protease (VAR2)		RAFL07-12-E19 ,At2g30950 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI:7650138 from [Arabidopsis thaliana]
3_5460001_5490000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-19-B03	At3g16140 / photosystem I subunit VI precursor		At3g16140 ,RAFL04-19-B03 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH1) identical to SP|Q9SUI7; similar to PSI-H precursor [Nicotiana sylvestris] GI:407353; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
1_20940001_20970000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	2	4428	0.013951966	0.041855898	3
		RAFL09-17-N17	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-17-N17 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
		RAFL09-18-P19	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-18-P19 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
2_15780001_15810000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-12-N10	At2g37870 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g37870 ,RAFL05-12-N10 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-I18	At2g37760 / aldo/keto reductase family		RAFL08-12-I18 ,At2g37760 aldo/keto reductase family protein similar to chalcone reductase [Sesbania rostrata][GI:2792155], and aldose reductase ALDRXV4 [Xerophyta viscosa][GI:4539944], [Hordeum vulgare][GI:728592]
2_16740001_16770000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-10-A01	At2g40210 / MADS-box protein		RAFL06-10-A01 ,At2g40210 MADS-box family protein contains Pfam profile: PF00319 SRF-type transcription factor (DNA-binding and dimerisation domain)
2_1950001_1980000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	0	4423	0.0026385873	0.0026385873	1
		RAFL06-16-I15	At2g05380 / glycine-rich protein		RAFL06-16-I15 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL07-17-N22	At2g05380 / glycine-rich protein		RAFL07-17-N22 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
4_4560001_4590000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL02-08-C20	At4g08790 / nitrilase 1 like protein		At4g08790 ,RAFL02-08-C20 nitrilase, putative similar to nitrilase 1 [Mus musculus] GI:3228668; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family
1_11190001_11220000					A	B	C	D	P	P'	N
	Cluster:0-2				4	75	0	4584	7.637009E-8	7.637009E-8	1
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
5_8880001_8910000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-18-J10	At5g25610 / dehydration-induced protein RD22		At5g25610 ,RAFL07-18-J10 dehydration-responsive protein (RD22) identical to SP|Q08298 Dehydration-responsive protein RD22 precursor {Arabidopsis thaliana}
1_3030001_3060000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-12-N02	At1g09415 / expressed protein		At1g09415 ,RAFL05-12-N02 NPR1/NIM1-interacting protein 3 (NIMIN-3) identical to NIMIN-3 protein [Arabidopsis thaliana] GI:12057158, cDNA NIMIN-3 protein (nimin-3 gene)GI:12057157
5_9510001_9540000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	0	4416	0.002795081	0.002795081	1
		RAFL07-14-P04	At5g27150 / sodium proton exchanger (NHX1)		At5g27150 ,RAFL07-14-P04 sodium proton exchanger / Na+/H+ antiporter (NHX1) identical to Na+/H+ exchanger [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium proton exchanger Nhx1 [Arabidopsis thaliana] gi|4324597|gb|AAD16946; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
		RAFL05-04-M14	At5g27210 / expressed protein		RAFL05-04-M14 ,At5g27210 expressed protein weak similarity to seven transmembrane domain orphan receptor [Mus musculus] GI:4321619
4_5940001_5970000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
2_7260001_7290000					A	B	C	D	P	P'	N
	Cluster:7-1				2	263	0	4398	0.0032181933	0.0032181933	1
		RAFL04-16-L05	At2g16890 / glycosyltransferase family		RAFL04-16-L05 ,At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-04-P01	At2g16900 / expressed protein		RAFL05-04-P01 ,At2g16900 expressed protein
1_12090001_12120000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-17-B19	At1g33390 / helicase domain-containing protein		At1g33390 ,RAFL08-17-B19 helicase domain-containing protein similar to kurz protein [Drosophila melanogaster] GI:5869803; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
4_11100001_11400000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	11	4526	0.04651208	0.46512076	10
		RAFL05-03-G03	At4g23650 / calcium-dependent protein kinase, putative (CDPK)		At4g23650 ,RAFL05-03-G03 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL06-08-L06	At4g23480 / unknown similar to AGI		RAFL06-08-L06 ,At4g23480 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL06-08-L06
1_19200001_19500000					A	B	C	D	P	P'	N
	Cluster:10-0				4	20	12	4627	9.432309E-7	8.489078E-6	9
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
3_6870001_6900000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-14-L16	At3g19820 / cell elongation protein (DWARF1) (DIMINUTO) (DIM)		RAFL05-14-L16 ,At3g19820 cell elongation protein / DWARF1 / DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from [Arabidopsis thaliana]; contains Pfam FAD binding domain PF01565
1_11130001_11160000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-15-L13	At1g31190 / expressed protein		At1g31190 ,RAFL04-15-L13 inositol monophosphatase family protein similar to SP|P29218 Myo-inositol-1(or 4)-monophosphatase (EC 3.1.3.25) (Inositol monophosphatase) {Homo sapiens}; contains Pfam profile PF00459: Inositol monophosphatase family; EST gb|AA597395 comes from this gene
1_8370001_8400000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-17-P13	At1g23730 / carbonic anhydrase -related		RAFL04-17-P13 ,At1g23730 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase
4_2520001_2550000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-10-P09	At4g04955 / expressed protein		At4g04955 ,RAFL07-10-P09 amidohydrolase family protein similar to SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces cerevisiae}; contains Pfam profile PF01979: Amidohydrolase family
1_9150001_9180000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-14-G14	At1g26560 / glycosyl hydrolase family 1		At1g26560 ,RAFL04-14-G14 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]
1_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:9-1				3	93	22	4545	0.014007794	0.18210132	13
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
	Cluster:10-2				3	106	22	4532	0.019661572	0.25560045	13
		RAFL11-09-C12	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-09-C12 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL11-01-F16	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-01-F16 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL05-07-D13	At1g07430 / protein phosphatase 2C (PP2C), putative		RAFL05-07-D13 ,At1g07430 protein phosphatase 2C, putative / PP2C, putative similar to GB:CAB90633 from [Fagus sylvatica]
5_9210001_9240000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
2_11610001_11640000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-20-M06	At2g27260 / expressed protein		At2g27260 ,RAFL04-20-M06 expressed protein
5_19200001_19500000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	9	4590	0.009418122	0.06592685	7
		RAFL09-06-H02	At5g48380 / leucine rich repeat protein family		At5g48380 ,RAFL09-06-H02 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
		RAFL09-12-F09	At5g48380 / leucine rich repeat protein family		RAFL09-12-F09 ,At5g48380 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
	Cluster:3-1				3	213	8	4439	0.012270001	0.08589	7
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
4_13740001_13770000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL09-13-I05	At4g30210 / NADPH-ferrihemoprotein reductase (NADPH-cytochrome p450 reductase), putative		At4g30210 ,RAFL09-13-I05 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-cytochrome P450 oxydoreductase from [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183564, GI:13183566
1_7980001_8010000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-13-M17	At1g22640 / myb family transcription factor		At1g22640 ,RAFL06-13-M17 myb family transcription factor (MYB4) similar to myb-related protein GI:1020155 from [Arabidopsis thaliana]
4_240001_270000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-12-C07	At4g00570 / malate oxidoreductase -related		At4g00570 ,RAFL07-12-C07 malate oxidoreductase, putative similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP:P37225) {Solanum tuberosum}
4_17100001_17130000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	2	4521	0.005161324	0.015483973	3
		RAFL07-18-C21	At4g38920 / H+-pumping ATPase 16 kDa proteolipid, vacuolar (ava-p1)		RAFL07-18-C21 ,At4g38920 vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 3 (AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C
		RAFL07-12-A07	At4g38920 / H+-pumping ATPase 16 kDa proteolipid, vacuolar (ava-p1)		RAFL07-12-A07 ,At4g38920 vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 3 (AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C
5_1500001_1530000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-08-M01	At5g05110 / cysteine proteinase inhibitor-related protein		RAFL05-08-M01 ,At5g05110 cysteine protease inhibitor, putative / cystatin, putative similar to cysteine proteinase inhibitor [Glycine max] GI:1944342; contains Pfam profile PF00031: Cystatin domain
5_7710001_7740000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL07-10-I15	At5g23060 / expressed protein		At5g23060 ,RAFL07-10-I15 expressed protein
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-21-P23	At5g23060 / expressed protein		RAFL05-21-P23 ,At5g23060 expressed protein
3_1_300000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	18	4609	0.010090805	0.15136206	15
		RAFL06-13-B01	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-13-B01 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
		RAFL06-11-K17	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-11-K17 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
5_2070001_2100000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-11-C23	At5g06760 / late embryogenesis abundant protein LEA like		RAFL08-11-C23 ,At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein low similarity to SP|P46515 11 kDa late embryogenesis abundant protein (DS11) {Helianthus annuus}; contains Pfam profile PF03760: Late embryogenesis abundant (LEA) group 1
4_10800001_11100000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	6	4548	0.013828159	0.08296896	6
		RAFL05-14-C11	At4g22820 / zinc finger -related protein		At4g22820 ,RAFL05-14-C11 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
		RAFL09-07-B11	At4g23050 / serine/threonine kinase -related		At4g23050 ,RAFL09-07-B11 protein kinase, putative similar to MAP3K delta-1 protein kinase [Arabidopsis thaliana] gi|2253010|emb|CAA74591; contains Pfam PF00069 Protein kinase domain and PF00989 PAS domain
1_24000001_27000000					A	B	C	D	P	P'	N
	Cluster:0-0				5	31	119	4508	0.0023874678	0.06207416	26
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-08-C15	At1g72610 / germin-like protein (AtGER1)		RAFL06-08-C15 ,At1g72610 germin-like protein (GER1) identical to germin-like protein subfamily 3 member 1 SP|P94040; contains Pfam profile: PF01072 Germin family
	Cluster:2-0				10	140	114	4399	0.0061895447	0.16092817	26
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL02-08-D12	At1g70850 / Bet v I allergen family		At1g70850 ,RAFL02-08-D12 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-09-P17	At1g72370 / 40S ribosomal protein SA (RPSaA)		RAFL09-09-P17 ,At1g72370 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL05-15-E14	At1g70600 / 60S ribosomal protein L27A (RPL27aC)		At1g70600 ,RAFL05-15-E14 60S ribosomal protein L27A (RPL27aC) identical to 60S ribosomal protein L27A GB:P49637 [Arabidopsis thaliana]
		RAFL05-15-L20	At1g67030 / zinc finger protein (ZFP6)		At1g67030 ,RAFL05-15-L20 zinc finger (C2H2 type) family protein (ZFP6) identical to zinc finger protein, ZFP6 gi|790683|gb|AAA87302; contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL03-06-E12	At1g66270 / glycosyl hydrolase family 1, beta-glucosidase		RAFL03-06-E12 ,At1g66270 beta-glucosidase (PSR3.2) nearly identical to GI:2286069 from (Arabidopsis thaliana) (Plant Mol. Biol. 34 (1), 57-68 (1997)); similar to thioglucoside glucohydrolase (GI:984052) [Arabidopsis thaliana]
		RAFL09-07-D23	At1g67050 / expressed protein		RAFL09-07-D23 ,At1g67050 expressed protein
		RAFL05-12-K17	At1g67430 / 60S ribosomal protein L17 (RPL17B)		RAFL05-12-K17 ,At1g67430 60S ribosomal protein L17 (RPL17B) similar to ribosomal protein GI:19101 from [Hordeum vulgare]
5_18000001_21000000					A	B	C	D	P	P'	N
	Cluster:10-0				3	21	98	4541	0.014348622	0.43045866	30
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
	Cluster:8-1				8	154	93	4408	0.02332851	0.69985527	30
		RAFL04-13-A13	At5g51830 / fructokinase, putative		At5g51830 ,RAFL04-13-A13 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL11-01-G16	At5g47040 / Lon protease homolog 1 precursor		At5g47040 ,RAFL11-01-G16 Lon protease homolog 1, mitochondrial (LON) identical to Lon protease homolog 1 mitochondrial precursor SP:O64948 from [Arabidopsis thaliana]
		RAFL11-01-B13	At5g47650 / MutT/nudix family protein		At5g47650 ,RAFL11-01-B13 MutT/nudix family protein similar to Nucleoside diphosphate-linked moiety X motif 6 (Protein GFG) from {Xenopus laevis} SP|P13420, {Homo sapiens} SP|P53370; contains Pfam profile PF00293: NUDIX domain
		RAFL05-08-G05	At5g45900 / autophagy 7 (APG7)		RAFL05-08-G05 ,At5g45900 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family
		RAFL05-07-B03	At5g48655 / C3HC4-type zinc finger protein family		At5g48655 ,RAFL05-07-B03 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL05-20-O22	At5g47120 / Bax inhibitor-1 (BI-1), putative		RAFL05-20-O22 ,At5g47120 Bax inhibitor-1 putative / BI-1 putative SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear cress] {Arabidopsis thaliana}
		RAFL05-17-N23	At5g52200 / expressed protein		RAFL05-17-N23 ,At5g52200 expressed protein
		RAFL04-09-J20	At5g49480 / sodium-inducible calcium-binding protein		At5g49480 ,RAFL04-09-J20 sodium-inducible calcium-binding protein (ACP1) / sodium-responsive calcium-binding protein (ACP1) identical to NaCl-inducible Ca2+-binding protein GI:2352828 from [Arabidopsis thaliana]
	Cluster:3-1				10	206	91	4356	0.025575247	0.7672574	30
		RAFL06-11-E07	At5g46390 / Photosystem II D1 protein processing enzyme I (C-terminal processing protease),putative (ctpA)		At5g46390 ,RAFL06-11-E07 peptidase S41 family protein similar to C-terminal peptidase of the D1 protein [Hordeum vulgare subsp vulgare] GI:1296805; contains Pfam profiles PF03572: Peptidase family S41B, PF00595: PDZ domain (Also known as DHR or GLGF)
		RAFL06-11-E12	At5g46710 / expressed protein		RAFL06-11-E12 ,At5g46710 zinc-binding family protein similar zinc-binding protein [Pisum sativum] GI:16117799; contains Pfam profile PF04640 : Protein of unknown function, DUF597
		RAFL05-09-J08	At5g46700 / senescence-associated protein, putative		At5g46700 ,RAFL05-09-J08 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
		RAFL05-21-K14	At5g47320 / 40S ribosomal protein S19, mitochondrial precursor		At5g47320 ,RAFL05-21-K14 30S ribosomal protein S19, mitochondrial (RPS19)
		RAFL05-02-G06	At5g49720 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		RAFL05-02-G06 ,At5g49720 endo-1,4-beta-glucanase KORRIGAN (KOR) / cellulase (OR16pep) identical to endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis thaliana] GI:3978258; similar to endo-1,4-beta-D-glucanase; cellulase GI:5689613 from [Brassica napus]; identical to cDNA cellulase (OR16pep) GI:1022806
		RAFL07-18-G17	At5g48030 / DnaJ protein GFA2, putative		At5g48030 ,RAFL07-18-G17 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI:21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats)
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
1_23640001_23670000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL02-07-B18	At1g64590 / short-chain dehydrogenase/reductase family protein		RAFL02-07-B18 ,At1g64590 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily
5_9330001_9360000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-F14	At5g26751 / shaggy-related protein kinase alpha		At5g26751 ,RAFL04-15-F14 shaggy-related protein kinase alpha / ASK-alpha (ASK1) identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from [Arabidopsis thaliana]
5_4080001_4110000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-07-F01	At5g12940 / leucine rich repeat protein family		RAFL05-07-F01 ,At5g12940 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611
3_600001_900000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	10	4371	0.039814703	0.39814702	10
		RAFL05-21-L06	At3g03570 / expressed protein		RAFL05-21-L06 ,At3g03570 expressed protein similar to hypothetical protein GB:CAB38918 [Arabidopsis thaliana]
		RAFL05-03-L14	At3g03530 / phosphoesterase family		At3g03530 ,RAFL05-03-L14 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family
		RAFL04-12-J09	At3g03420 / expressed protein		RAFL04-12-J09 ,At3g03420 Ku70-binding family protein similar to Ku70-binding protein GB:AAD31085 GI:4867999 [Homo sapiens]; contains Prosite PS00142: Neutral zinc metallopeptidases, zinc-binding region signature
5_22710001_22740000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL11-07-J10	At5g56870 / glycosyl hydrolase family 35 (beta-galactosidase)		RAFL11-07-J10 ,At5g56870 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor GI:3869280 from [Carica papaya]
5_9480001_9510000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL07-12-J16	At5g27120 / SAR DNA-binding protein, putative		At5g27120 ,RAFL07-12-J16 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain
3_30001_60000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL06-13-I09	At3g01120 / cystathionine gamma-synthase -related		RAFL06-13-I09 ,At3g01120 cystathionine gamma-synthase, chloroplast / O-succinylhomoserine (Thiol)-lyase (CGS) identical to SP|P55217 Cystathionine gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana}
2_17730001_17760000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-15-D21	At2g42790 / citrate synthase -related		RAFL05-15-D21 ,At2g42790 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase
2_9720001_9750000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	2	4521	0.005161324	0.015483973	3
		RAFL09-11-N16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-11-N16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
		RAFL09-14-O16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-14-O16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
1_23370001_23400000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL04-15-B06	At1g63940 / monodehydroascorbate reductase, putative		RAFL04-15-B06 ,At1g63940 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
		RAFL07-07-K13	At1g63940 / monodehydroascorbate reductase, putative		At1g63940 ,RAFL07-07-K13 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
5_18990001_19020000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	2	4565	0.002449967	0.007349901	3
		RAFL09-09-E01	At5g47560 / sodium/dicarboxylate cotransporter, putative		RAFL09-09-E01 ,At5g47560 sodium/dicarboxylate cotransporter, putative similar to SWISS-PROT:Q13183 renal sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
		RAFL11-13-F11	At5g47550 / expressed protein		RAFL11-13-F11 ,At5g47550 cysteine protease inhibitor, putative / cystatin, putative similar to SP|P09229 Cysteine proteinase inhibitor-I (Oryzacystatin-I) {Oryza sativa}; contains Pfam profile PF00031: Cystatin domain
2_7530001_7560000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-I20	At2g17500 / auxin efflux carrier protein family		At2g17500 ,RAFL05-13-I20 auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547
1_8250001_8280000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	4	4485	0.018809408	0.07523763	4
		RAFL05-14-F03	At1g23310 / alanine aminotransferase -related		RAFL05-14-F03 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL07-12-E03	At1g23310 / alanine aminotransferase -related		RAFL07-12-E03 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
	Cluster:2-1				2	242	4	4415	0.0355681	0.1422724	4
		RAFL09-16-K01	At1g23310 / alanine aminotransferase -related		RAFL09-16-K01 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL09-09-I19	At1g23310 / alanine aminotransferase -related		RAFL09-09-I19 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
3_22470001_22500000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-07-P18	At3g60820 / 20S proteasome beta subunit F1 (PBF1)		RAFL06-07-P18 ,At3g60820 20S proteasome beta subunit F1 (PBF1)
3_19770001_19800000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-08-J21	At3g53370 / expressed protein		RAFL05-08-J21 ,At3g53370 DNA-binding S1FA family protein contains Pfam profile: PF04689 DNA binding protein S1FA
3_10200001_10500000					A	B	C	D	P	P'	N
	Cluster:0-1				3	103	10	4547	0.002766296	0.024896665	9
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
1_4590001_4620000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-13-M02	At1g13440 / glyceraldehyde-3-phosphate dehydrogenase -related		RAFL06-13-M02 ,At1g13440 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative very strong similarity to SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain
5_20730001_20760000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-N18	At5g51750 / subtilisin-like serine protease		At5g51750 ,RAFL07-08-N18 subtilase family protein similar to subtilisin-like protease GI:3687307 from [Lycopersicon esculentum]
5_16350001_16380000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-13-D07	At5g41600 / expressed protein		At5g41600 ,RAFL04-13-D07 reticulon family protein (RTNLB4) weak similarity to Nogo-C protein [Rattus norvegicus] GI:6822251, SP|O95197 Reticulon protein 3 (Neuroendocrine-specific protein-like) {Homo sapiens}; contains Pfam profile PF02453: Reticulon
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-15-O16	At5g41670 / 6-phosphogluconate dehydrogenase		At5g41670 ,RAFL06-15-O16 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate
5_24000001_24300000					A	B	C	D	P	P'	N
	Cluster:2-0				4	146	13	4500	0.0017651725	0.015886553	9
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-12-H19	At5g60640 / protein disulfide isomerase family		At5g60640 ,RAFL05-12-H19 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
	Cluster:8-2				2	60	15	4586	0.020808658	0.18727791	9
		RAFL05-14-L07	At5g60790 / ABC transporter family protein		At5g60790 ,RAFL05-14-L07 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
		RAFL07-10-I02	At5g60790 / ABC transporter family protein		RAFL07-10-I02 ,At5g60790 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
2_15390001_15420000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL05-05-O01	At2g36830 / major intrinsic protein (MIP) family		At2g36830 ,RAFL05-05-O01 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230
2_11700001_11730000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	2	4511	0.00591059	0.017731769	3
		RAFL09-09-C01	At2g27530 / 60S ribosomal protein L10A (RPL10aB)		RAFL09-09-C01 ,At2g27530 60S ribosomal protein L10A (RPL10aB)
		RAFL09-17-M14	At2g27530 / 60S ribosomal protein L10A (RPL10aB)		RAFL09-17-M14 ,At2g27530 60S ribosomal protein L10A (RPL10aB)
4_12000001_15000000					A	B	C	D	P	P'	N
	Cluster:0-2				8	71	146	4438	0.0042114104	0.12634231	30
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL05-21-A21	At4g26850 / expressed protein		RAFL05-21-A21 ,At4g26850 expressed protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL05-17-G02	At4g27700 / rhodanese-like domain protein		At4g27700 ,RAFL05-17-G02 rhodanese-like domain-containing protein contains rhodanese-like domain PF00581
	Cluster:8-1				12	150	142	4359	0.010761281	0.32283843	30
		RAFL05-14-K07	At4g27680 / expressed protein		RAFL05-14-K07 ,At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family
		RAFL07-10-J07	At4g31550 / WRKY family transcription factor		RAFL07-10-J07 ,At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL02-09-C13	At4g28240 / wound induced protein -related		At4g28240 ,RAFL02-09-C13 wound-responsive protein-related wound-induced protein - tomato (fragment), PIR2:S19773
		RAFL08-18-J23	At4g25650 / Rieske (2Fe-2S) domain-containing protein		RAFL08-18-J23 ,At4g25650 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain
		RAFL09-12-B15	At4g30600 / signal recognition particle receptor-related protein		At4g30600 ,RAFL09-12-B15 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain
		RAFL05-18-A07	At4g27500 / proton pump interactor		RAFL05-18-A07 ,At4g27500 expressed protein non-consensus GA donor splice site at exon 6
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-14-J24	At4g26750 / proline-rich protein family		RAFL05-14-J24 ,At4g26750 hydroxyproline-rich glycoprotein family protein
		RAFL11-01-P18	At4g31770 / calcineurin-like phosphoesterase family		At4g31770 ,RAFL11-01-P18 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
	Cluster:4-1				17	293	137	4216	0.032195207	0.96585625	30
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-09-P07	At4g29120 / expressed protein		RAFL05-09-P07 ,At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase
		RAFL11-03-M02	At4g28530 / No apical meristem (NAM) protein family		RAFL11-03-M02 ,At4g28530 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; No apical meristem gene (NAM), required for pattern formation in embryos and flowers-Petunia hybrida, PATCHX:E205713
		RAFL08-16-B20	At4g29260 / acid phosphatase-related protein		At4g29260 ,RAFL08-16-B20 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL02-08-O23	At4g27380 / expressed protein		At4g27380 ,RAFL02-08-O23 expressed protein
		RAFL09-17-K23	At4g28025 / expressed protein		RAFL09-17-K23 ,At4g28025 expressed protein
		RAFL07-09-H05	At4g28440 / expressed protein		RAFL07-09-H05 ,At4g28440 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098
		RAFL05-07-C03	At4g30610 / serine carboxypeptidase -related		RAFL05-07-C03 ,At4g30610 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
		RAFL05-04-A06	At4g29810 / mitogen-activated protein kinase kinase (MAPKK)(MKK2)		At4g29810 ,RAFL05-04-A06 mitogen-activated protein kinase kinase (MAPKK) (MKK2) identical to MAP kinase kinase 2 [Arabidopsis thaliana] gi|3219267|dbj|BAA28828; mitogen-activated protein kinase kinase (MAPKK) family, PMID:12119167
		RAFL05-10-C19	At4g26210 / expressed protein		At4g26210 ,RAFL05-10-C19 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit
		RAFL03-07-B04	At4g30010 / expressed protein		RAFL03-07-B04 ,At4g30010 expressed protein
		RAFL06-09-O09	At4g26710 / expressed protein		At4g26710 ,RAFL06-09-O09 ATP synthase subunit H family protein contains similarity to Swiss-Prot:O15342 Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) [Homo sapiens]
		RAFL05-09-P06	At4g31030 / hypothetical protein		At4g31030 ,RAFL05-09-P06 expressed protein
		RAFL09-11-F14	At4g27870 / expressed protein		At4g27870 ,RAFL09-11-F14 integral membrane family protein contains Pfam PF01988: Integral membrane protein
		RAFL06-13-O04	At4g31170 / protein kinase family		RAFL06-13-O04 ,At4g31170 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719
		RAFL02-02-I08	At4g32470 / ubiquinol-cytochrome c reductase - like protein		At4g32470 ,RAFL02-02-I08 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative similar to SP|P48502 Ubiquinol-cytochrome C reductase complex 14 kDa protein (EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam profile PF02271: Ubiquinol-cytochrome C reductase complex 14kD subunit
4_5070001_5100000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-19-A10	At4g09670 / AX110P -related protein		RAFL05-19-A10 ,At4g09670 oxidoreductase family protein similar to AX110P [Daucus carota] GI:285739; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
5_20040001_20070000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-16-L10	At5g49970 / expressed protein		At5g49970 ,RAFL05-16-L10 pyridoxamine 5'-phosphate oxidase-related contains weak similarity to Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx). (Swiss-Prot:P28225) [Shigella flexneri]
5_18450001_18480000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-08-E04	At5g46250 / RNA recognition motif (RRM) - containing protein		At5g46250 ,RAFL08-08-E04 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
4_9630001_9660000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-J06	At4g19640 / GTP-binding protein, putative		At4g19640 ,RAFL05-08-J06 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI:1370178 from [Lotus japonicus]
3_7200001_7230000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-A22	At3g20670 / histone H2A, putative		At3g20670 ,RAFL05-21-A22 histone H2A, putative strong similarity to histone H2A GB:AAF64418 GI:7595337 from Arabidopsis thaliana, Triticum aestivum GI:536892; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
3_16500001_16530000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-05-F06	At3g45100 / n-acetylglucosaminyl-phosphatidylinositol biosynthetic protein, putative		At3g45100 ,RAFL05-05-F06 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein, putative similar to PIG-A from Mus musculus [gi:577723[, Homo sapiens [SP|P37287]; contains Pfam glycosyl transferase, group 1 family protein domain PF00534
5_25230001_25260000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-21-I22	At5g63790 / No apical meristem (NAM) protein family		RAFL05-21-I22 ,At5g63790 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; contains similarity to NAC-domain protein
3_2700001_2730000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-09-F16	At3g08940 / chlorophyll a/b-binding protein -related		At3g08940 ,RAFL06-09-F16 chlorophyll A-B binding protein (LHCB4.2) contains Pfam profile: PF00504 chlorophyll A-B binding protein; identical to Lhcb4.2 protein GB:AAD28774 [Arabidopsis thaliana]
3_8100001_8400000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	11	4599	0.009126297	0.07301038	8
		RAFL07-10-P11	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-10-P11 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
		RAFL07-12-E10	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-12-E10 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
	Cluster:2-1				3	241	10	4409	0.027396575	0.2191726	8
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
4_15720001_15750000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-O24	At4g35250 / vestitone reductase-related		RAFL05-16-O24 ,At4g35250 vestitone reductase-related low similarity to vestitone reductase [Medicago sativa subsp. sativa] GI:973249
1_5310001_5340000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-07-B17	At1g15500 / adenine nucleotide translocase -related		RAFL09-07-B17 ,At1g15500 chloroplast ADP, ATP carrier protein, putative / ADP, ATP translocase, putative / adenine nucleotide translocase, putative strong similarity to SP|Q39002 Chloroplast ADP,ATP carrier protein 1, chloroplast precursor (ADP/ATP translocase 1) (Adenine nucleotide translocase 1) {Arabidopsis thaliana}; contains Pfam profile PF03219: TLC ATP/ADP transporter
4_12030001_12060000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	6	4590	0.0053859474	0.032315683	6
		RAFL05-03-K03	At4g25670 / expressed protein		RAFL05-03-K03 ,At4g25670 expressed protein
		RAFL09-11-P17	At4g25690 / expressed protein		At4g25690 ,RAFL09-11-P17 expressed protein
2_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	8	4422	0.015076893	0.12061515	8
		RAFL09-17-F19	At2g17033 / pentatricopeptide (PPR) repeat-containing protein		At2g17033 ,RAFL09-17-F19 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL05-07-F05	At2g17360 / 40S ribosomal protein S4 (RPS4A)		At2g17360 ,RAFL05-07-F05 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
		RAFL09-18-O15	At2g17360 / 40S ribosomal protein S4 (RPS4A)		RAFL09-18-O15 ,At2g17360 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
3_9240001_9270000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-F20	At3g25500 / formin homology 2 (FH2) domain-containing protein		At3g25500 ,RAFL08-12-F20 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181
3_4800001_5100000					A	B	C	D	P	P'	N
	Cluster:1-0				3	146	12	4502	0.010968564	0.13162278	12
		RAFL06-16-H23	At3g15030 / TCP family transcription factor, putative		At3g15030 ,RAFL06-16-H23 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
1_17850001_17880000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-02-N23	At1g49430 / long-chain-fatty-acid--CoA ligase (acyl CoA synthetase)		At1g49430 ,RAFL05-02-N23 long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase nearly identical to acyl CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
3_18000001_21000000					A	B	C	D	P	P'	N
	Cluster:2-1				15	229	152	4267	0.033300914	0.9657265	29
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-09-H09	At3g48930 / 40S ribosomal protein S11 (RPS11A)		At3g48930 ,RAFL06-09-H09 40S ribosomal protein S11 (RPS11A)
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL02-02-A04	At3g54890 / light-harvesting chlorophyll a/b binding protein		At3g54890 ,RAFL02-02-A04 chlorophyll A-B binding protein / LHCI type I (CAB) identical to chlorophyll A/B-binding protein [Arabidopsis thaliana] GI:16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL05-20-D01	At3g51510 / expressed protein		RAFL05-20-D01 ,At3g51510 expressed protein
		RAFL05-01-G23	At3g49600 / ubiquitin-specific protease 26 (UBP26)		At3g49600 ,RAFL05-01-G23 ubiquitin-specific protease 26 (UBP26) similar to GI:11993492; RNA binding protein - Homo sapiens, EMBL:AB016089 (N-terminus), several ubiquitin carboxyl-terminal hydrolases from aa pos. 712
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL06-08-E09	At3g54640 / tryptophan synthase, alpha subunit (TSA1)		RAFL06-08-E09 ,At3g54640 tryptophan synthase, alpha subunit (TSA1) identical to gi:619753
		RAFL04-14-L08	At3g49010 / 60S ribosomal protein L13 (RPL13B)/breast basic conserved protein 1-related (BBC1)		At3g49010 ,RAFL04-14-L08 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1)
		RAFL04-10-H14	At3g49910 / 60S ribosomal protein L26 (RPL26A)		At3g49910 ,RAFL04-10-H14 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-17-L17	At3g55280 / 60S ribosomal protein L23A (RPL23aB)		RAFL05-17-L17 ,At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
		RAFL05-03-L01	At3g56340 / 40S ribosomal protein S26 homolog		At3g56340 ,RAFL05-03-L01 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26
4_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:8-0				10	99	149	4405	0.003731767	0.11568478	31
		RAFL05-02-B21	At4g37430 / cytochrome P450 91A2		RAFL05-02-B21 ,At4g37430 cytochrome P450 81F1 (CYP81F1) (CYP91A2) identical to cytochrome P450 81F1 (91A2) (SP:O65790) [Arabidopsis thaliana]
		RAFL08-19-J11	At4g39140 / expressed protein		At4g39140 ,RAFL08-19-J11 expressed protein
		RAFL09-18-B09	At4g36760 / aminopeptidase-related protein		RAFL09-18-B09 ,At4g36760 aminopeptidase P similar to Xaa-Pro aminopeptidase 2 [Lycopersicon esculentum] GI:15384991; contains Pfam profile PF00557: metallopeptidase family M24
		RAFL05-09-P15	At4g33540 / hydrolase family		RAFL05-09-P15 ,At4g33540 metallo-beta-lactamase family protein
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL05-21-M07	At4g39090 / cysteine proteinase RD19A		RAFL05-21-M07 ,At4g39090 cysteine proteinase RD19a (RD19A) / thiol protease identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from [Arabidopsis thaliana]
		RAFL11-13-G16	At4g36210 / expressed protein		RAFL11-13-G16 ,At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726)
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
1_27000001_27030000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-07-D13	At1g72680 / cinnamyl-alcohol dehydrogenase (CAD), putative		At1g72680 ,RAFL11-07-D13 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl-alcohol dehydrogenase GB:AAC35846 [Medicago sativa], SP|Q08350 [Picea abies]
4_15480001_15510000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL05-14-H02	At4g34620 / ribosomal protein S16p family		RAFL05-14-H02 ,At4g34620 ribosomal protein S16 family protein ribosomal protein S16, Neurospora crassa, PIR2:A29927
		RAFL07-16-I10	At4g34620 / ribosomal protein S16p family		RAFL07-16-I10 ,At4g34620 ribosomal protein S16 family protein ribosomal protein S16, Neurospora crassa, PIR2:A29927
5_2880001_2910000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-13-C16	At5g09330 / expressed protein		At5g09330 ,RAFL07-13-C16 no apical meristem (NAM) family protein similar to NAC1 (GI:7716952) {Medicago truncatula}; contains Pfam PF02365: No apical meristem (NAM) protein
1_3900001_4200000					A	B	C	D	P	P'	N
	Cluster:1-2				3	171	14	4475	0.023616483	0.25978133	11
		RAFL07-12-L15	At1g12000 / pyrophosphate-fructose-6-phosphate 1-phosphotransferase -related		At1g12000 ,RAFL07-12-L15 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase
		RAFL09-10-E05	At1g12090 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At1g12090 ,RAFL09-10-E05 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL09-16-M15	At1g11860 / aminomethyltransferase-related precursor protein		RAFL09-16-M15 ,At1g11860 aminomethyltransferase, putative similar to aminomethyltransferase, mitochondrial precursor SP:O49849 from [Flaveria anomala]
	Cluster:0-2				2	77	15	4569	0.032697435	0.35967177	11
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
5_4380001_4410000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-F22	At5g13650 / GTP-binding protein typA (tyrosine phosphorylated protein A)		At5g13650 ,RAFL06-08-F22 elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain,PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2
		RAFL02-09-C19	At5g13630 / cobalamin biosynthesis protein		At5g13630 ,RAFL02-09-C19 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) nearly identical to magnesium chelatase subunit GI:1154627 from [Arabidopsis thaliana]; contains Pfam profile: PF02514 CobN/magnesium chelatase family protein
3_3390001_3420000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL11-01-J02	At3g10860 / ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C) -related		RAFL11-01-J02 ,At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative similar to ubiquinol--cytochrome c reductase GI:633687 from [Solanum tuberosum]
		RAFL05-14-B03	At3g10920 / manganese superoxide dismutase (MSD1)		At3g10920 ,RAFL05-14-B03 superoxide dismutase [Mn], mitochondrial (SODA) / manganese superoxide dismutase (MSD1) identical to manganese superoxide dismutase [Arabidopsis thaliana] gi|3273751|gb|AAC24832
3_23070001_23100000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-18-G05	At3g62410 / CP12 protein precursor-related protein		RAFL05-18-G05 ,At3g62410 CP12 domain-containing protein contains Pfam domain PF02672: CP12 domain
3_630001_660000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-11-C05	At3g02875 / IAA-amino acid hydrolase 1 (ILR1)		At3g02875 ,RAFL05-11-C05 IAA-amino acid hydrolase 1 (ILR1) identical to IAA-amino acid hydrolase 1 (ILR1) [Arabidopsis thaliana] SWISS-PROT:P54968
2_17280001_17310000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-B18	At2g41620 / expressed protein		RAFL05-07-B18 ,At2g41620 nucleoporin interacting component family protein contains Pfam profile PF04097: Nucleoporin interacting component
3_18630001_18660000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-19-J20	At3g50270 / hydroxycinnamoyl/benzoyltransferase-related		At3g50270 ,RAFL04-19-J20 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi:2239091]; contains Pfam transferase family domain PF002458
4_14160001_14190000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-11-F19	At4g31360 / expressed protein		RAFL06-11-F19 ,At4g31360 expressed protein
1_990001_1020000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-16-H10	At1g03930 / protein kinase (ADK1)		RAFL07-16-H10 ,At1g03930 protein kinase (ADK1) identical to dual specificity kinase 1 (ADK1) [Arabidopsis thaliana] gi|1216484|gb|AAB47968; supported by cDNA gi:18700076 and gi:1216483. Note: differences between cDNAs in the 11th exon, possibly due to errors or alternative splicing.
5_21870001_21900000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-G24	At5g54600 / 50S ribosomal protein L24, chloroplast precursor (CL24)		At5g54600 ,RAFL05-13-G24 50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana}
2_15900001_15930000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-15-H02	At2g38120 / amino acid permease, putative (AUX1)		At2g38120 ,RAFL07-15-H02 amino acid permease, putative (AUX1) identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
1_1110001_1140000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-08-I17	At1g04240 / auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3)		RAFL07-08-I17 ,At1g04240 auxin-responsive protein / indoleacetic acid-induced protein 3 (IAA3) identical to SP|Q38822 Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes from this gene
1_9060001_9090000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	1	4380	0.010497557	0.020995114	2
		RAFL04-13-O14	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL04-13-O14 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL03-09-A18	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL03-09-A18 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
1_18060001_18090000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL03-06-G11	At1g49970 / ATP-dependent Clp protease proteolytic subunit (ClpR1)		At1g49970 ,RAFL03-06-G11 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069 GI:5360595 from [Arabidopsis thaliana]; identical to cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
1_15000001_15300000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-L21	At1g41880 / 60S ribosomal protein L35a (RPL35aB)		RAFL04-15-L21 ,At1g41880 60S ribosomal protein L35a (RPL35aB) identical to GB:CAB81600 from [Arabidopsis thaliana]
2_6750001_6780000					A	B	C	D	P	P'	N
	Cluster:2-1				4	240	0	4419	7.32362E-6	7.32362E-6	1
		RAFL08-13-H16	At2g15620 / ferredoxin--nitrite reductase		RAFL08-13-H16 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-17-P17	At2g15620 / ferredoxin--nitrite reductase		RAFL07-17-P17 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-10-K10	At2g15620 / ferredoxin--nitrite reductase		RAFL07-10-K10 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL09-17-G12	At2g15620 / ferredoxin--nitrite reductase		RAFL09-17-G12 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
1_19020001_19050000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
2_18600001_18630000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-12-I18	At2g45290 / transketolase precursor -related		At2g45290 ,RAFL07-12-I18 transketolase, putative strong similarity to transketolase 1 [Capsicum annuum] GI:3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain, PF00456: Transketolase, thiamine diphosphate binding domain
2_19260001_19290000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-19-I07	At2g47060 / serine/threonine protein kinase, putative		RAFL05-19-I07 ,At2g47060 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
4_7500001_7530000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
4_14520001_14550000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-17-B14	At4g32260 / H+-transporting ATP synthase chain 9 - like protein		At4g32260 ,RAFL04-17-B14 ATP synthase family contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140
2_1200001_1500000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	3	4486	0.012852948	0.051411793	4
		RAFL09-14-N06	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL09-14-N06 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL05-03-E03	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL05-03-E03 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
3_6540001_6570000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL02-06-C18	At3g19030 / expressed protein		At3g19030 ,RAFL02-06-C18 expressed protein contains similarity to phosphoserine aminotransferase GB:P19689 from [Yersinia enterocolitica]
2_2340001_2370000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL06-16-J10	At2g06050 / 12-oxophytodienoate reductase (OPR3)(DDE1)		RAFL06-16-J10 ,At2g06050 12-oxophytodienoate reductase (OPR3) / delayed dehiscence1 (DDE1) nearly identical to DELAYED DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314]; contains Pfam profile PF00724:oxidoreductase, FAD/FMN-binding; identical to cDNA OPDA-reductase homolog GI:5059114
1_21840001_21870000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	1	4527	0.0024489556	0.004897911	2
		RAFL04-19-B12	At1g60230 / expressed protein		At1g60230 ,RAFL04-19-B12 radical SAM domain-containing protein contains Pfam profile PF04055: radical SAM domain protein
		RAFL07-11-G02	At1g60220 / Ulp1 protease family		At1g60220 ,RAFL07-11-G02 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain
3_9180001_9210000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL06-11-N20	At3g25220 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP15-1)		At3g25220 ,RAFL06-11-N20 FK506-binding protein 2-1 (FKBP15-1) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38935 FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) {Arabidopsis thaliana}, immunophilin (FKBP15-1) GB:U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 93 (14), 6964-6969 (1996))
		RAFL06-10-D09	At3g25230 / peptidylprolyl isomerase (ROF1)		RAFL06-10-D09 ,At3g25230 peptidyl-prolyl cis-trans isomerase / FK506-binding protein (ROF1) identical to rotamase FKBP (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252 (5), 510-517 (1996))
3_6300001_6330000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL05-04-N24	At3g18410 / expressed protein		At3g18410 ,RAFL05-04-N24 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-12KD) (CI-12KD). (Swiss-Prot:Q03015) [Neurospora crassa]
		RAFL05-04-P18	At3g18420 / expressed protein		At3g18420 ,RAFL05-04-P18 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile: PF00515 tetratricopeptide repeat domain (TPR domain)
1_14160001_14190000					A	B	C	D	P	P'	N
	Cluster:5-2				3	123	3	4534	3.6307445E-4	0.0014522978	4
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
2_11850001_11880000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-07-L14	At2g28000 / RuBisCO subunit binding-protein alpha subunit/60 kDa chaperonin alpha subunit		At2g28000 ,RAFL06-07-L14 RuBisCO subunit binding-protein alpha subunit, chloroplast / 60 kDa chaperonin alpha subunit / CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) [Arabidopsis thaliana]
2_2310001_2340000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-H24	At2g05990 / enoyl-(acyl-carrier protein) reductase (NADH) (enr-A), putative		RAFL07-08-H24 ,At2g05990 enoyl-[acyl-carrier protein] reductase [NADH], chloroplast, putative / NADH-dependent enoyl-ACP reductase, putative strong similarity to enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030 from [Brassica napus]
1_10260001_10290000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-18-O20	At1g29395 / expressed protein		At1g29395 ,RAFL05-18-O20 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505
5_24150001_24180000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL05-14-L07	At5g60790 / ABC transporter family protein		At5g60790 ,RAFL05-14-L07 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
		RAFL07-10-I02	At5g60790 / ABC transporter family protein		RAFL07-10-I02 ,At5g60790 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
2_8100001_8400000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	5	4425	0.0057203583	0.022881433	4
		RAFL05-19-G09	At2g19480 / nucleosome assembly protein -related		RAFL05-19-G09 ,At2g19480 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP)
		RAFL05-21-G06	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL05-21-G06 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL07-08-N11	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		At2g18960 ,RAFL07-08-N11 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
1_1560001_1590000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-13-A12	At1g05385 / expressed protein		At1g05385 ,RAFL04-13-A12 photosystem II 11 kDa protein-related similar to Photosystem II 11 kDa protein precursor (SP|P74367)[strain PCC 6803] {Synechocystis sp.}
1_4470001_4500000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL07-16-B19	At1g13190 / RRM-containing protein		At1g13190 ,RAFL07-16-B19 RNA recognition motif (RRM)-containing protein
5_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	10	4586	0.012233394	0.11010055	9
		RAFL08-13-M13	At5g06530 / ABC transporter family protein		RAFL08-13-M13 ,At5g06530 ABC transporter family protein
		RAFL05-09-M02	At5g06320 / harpin-induced protein 1 family (NDR1/HIN1-like protein 3)		RAFL05-09-M02 ,At5g06320 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein / NDR1/HIN1-like protein 3 similar to harpin-induced protein hin1 (GI:1619321)[Nicotiana tabacum]
3_9000001_9300000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	12	4407	0.040360164	0.4439618	11
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
4_13770001_13800000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-09-O24	At4g30270 / xyloglucan endotransglycosylase (meri5B)		RAFL04-09-O24 ,At4g30270 MERI-5 protein (MERI-5) (MERI5B) / endo-xyloglucan transferase / xyloglucan endo-1,4-beta-D-glucanase (SEN4) identical to endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5 protein precursor (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis thaliana}
5_4800001_5100000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	8	4593	0.007308847	0.058470774	8
		RAFL05-02-G21	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL05-02-G21 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
		RAFL11-05-M03	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL11-05-M03 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
	Cluster:1-0				2	147	8	4506	0.038570926	0.3085674	8
		RAFL09-18-F02	At5g15230 / GASA4		At5g15230 ,RAFL09-18-F02 gibberellin-regulated protein 4 (GASA4) / gibberellin-responsive protein 4 identical to SP|P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana}
		RAFL02-06-N10	At5g14920 / expressed protein		RAFL02-06-N10 ,At5g14920 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein
4_10500001_10800000					A	B	C	D	P	P'	N
	Cluster:5-2				2	124	8	4529	0.028284373	0.22627498	8
		RAFL08-16-K20	At4g21990 / 5'-adenylylsulfate reductase (APR3)		RAFL08-16-K20 ,At4g21990 5'-adenylylsulfate reductase (APR3) / PAPS reductase homolog (PRH26) identical to 5'-adenylylsulfate reductase [Arabidopsis thaliana] GI:2738760; identical to cDNA PAPS reductase homolog (PRH26) GI:1710113
		RAFL04-20-J03	At4g22380 / Ribosomal protein L7Ae family		At4g22380 ,RAFL04-20-J03 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
1_1500001_1530000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-15-H22	At1g05190 / ribosomal protein L6p family		At1g05190 ,RAFL09-15-H22 ribosomal protein L6 family protein Similar to Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698 come from this gene
1_630001_660000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	0	4381	2.1897607E-4	2.1897607E-4	1
		RAFL07-18-K04	At1g02850 / glycosyl hydrolase family 1		RAFL07-18-K04 ,At1g02850 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL09-06-G17	At1g02850 / glycosyl hydrolase family 1		At1g02850 ,RAFL09-06-G17 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL07-14-E05	At1g02920 / glutathione transferase, putative		RAFL07-14-E05 ,At1g02920 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA GI:443697.
3_23130001_23160000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-08-C20	At3g62530 / expressed protein		At3g62530 ,RAFL05-08-C20 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130 PBS lyase HEAT-like repeat
2_14070001_14100000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	2	4637	0.015364647	0.04609394	3
		RAFL08-16-M12	At2g33380 / RD20 protein		RAFL08-16-M12 ,At2g33380 calcium-binding RD20 protein (RD20) induced by abscisic acid during dehydration PMID:10965948; putative transmembrane channel protein PMID:10965948; identical to GI:10862968 [Arabidopsis thaliana]; contains EF-hand domain
4_2640001_2670000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
1_27180001_27210000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	1	4566	0.0012416516	0.0024833032	2
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
5_22740001_22770000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-12-C19	At5g56940 / ribosomal protein S16p family		RAFL04-12-C19 ,At5g56940 ribosomal protein S16 family protein contains Pfam profile PF00886: ribosomal protein S16
2_6870001_6900000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	0	4567	4.1952432E-4	4.1952432E-4	1
		RAFL05-19-E15	At2g15960 / expressed protein		RAFL05-19-E15 ,At2g15960 expressed protein
		RAFL06-16-B22	At2g15970 / cold acclimation protein WCOR413 (Triticum aestivum) -related		RAFL06-16-B22 ,At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI:10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI:11127595
3_8370001_8400000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
5_18540001_18570000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-15-O08	At5g46430 / 60S ribosomal protein L32 (RPL32B)		RAFL04-15-O08 ,At5g46430 60S ribosomal protein L32 (RPL32B)
5_240001_270000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-20-N19	At5g01710 / expressed protein		At5g01710 ,RAFL05-20-N19 expressed protein
4_15210001_15240000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-D01	At4g33950 / protein kinase, putative		At4g33950 ,RAFL05-13-D01 protein kinase, putative similar to abscisic acid-activated protein kinase [Vicia faba] gi|6739629|gb|AAF27340; contains protein kinase domain, Pfam:PF00069
1_20220001_20250000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL11-09-E21	At1g55330 / arabinogalactan-protein (AGP21)		RAFL11-09-E21 ,At1g55330 arabinogalactan-protein (AGP21)
2_17940001_17970000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL11-05-N18	At2g43400 / electron transfer flavo protein ubiquinone oxidoreductase -related		At2g43400 ,RAFL11-05-N18 electron transfer flavoprotein-ubiquinone oxidoreductase family protein contains Pfam profile: PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase
3_16920001_16950000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	1	4347	0.0011607888	0.0023215776	2
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
1_12600001_12900000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL08-19-E24	At1g34780 / expressed protein		RAFL08-19-E24 ,At1g34780 protein disulfide isomerase-related contains weak similarity to Pfam:P08003 protein disulfide isomerase A4 precursor (Protein ERp-72, ERp72) [Mus musculus]
3_20430001_20460000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
5_4770001_4800000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-B21	At5g14780 / formate dehydrogenase (FDH)		RAFL05-04-B21 ,At5g14780 formate dehydrogenase (FDH) identical to GI:7677266
1_9600001_9900000					A	B	C	D	P	P'	N
	Cluster:6-1				3	312	5	4343	0.013248402	0.07949041	6
		RAFL08-16-J16	At1g27970 / nuclear transport factor 2 -related		At1g27970 ,RAFL08-16-J16 nuclear transport factor 2 (NTF2), putative similar to Swiss-Prot:P33331 nuclear transport factor 2 (NTF-2) (Nuclear transport factor P10) [Saccharomyces cerevisiae]
		RAFL04-18-J23	At1g27900 / RNA helicase, putative		At1g27900 ,RAFL04-18-J23 RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL07-14-J21	At1g28140 / expressed protein		RAFL07-14-J21 ,At1g28140 expressed protein contains similarity to cytochrome oxidase I GI:1289267 from (Xantholinus sp.)
3_8400001_8700000					A	B	C	D	P	P'	N
	Cluster:3-2				6	31	11	4615	1.89826E-9	1.518608E-8	8
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
5_24690001_24720000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	0	4423	0.0026385873	0.0026385873	1
		RAFL07-10-M06	At5g62190 / DEAD box RNA helicase (prh75), putative		RAFL07-10-M06 ,At5g62190 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL02-05-I02	At5g62190 / DEAD box RNA helicase (prh75), putative		RAFL02-05-I02 ,At5g62190 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
2_10620001_10650000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-05-G05	At2g25140 / HSP100/ClpB, putative		RAFL05-05-G05 ,At2g25140 heat shock protein 100, putative / HSP100, putative / heat shock protein clpB, putative / HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530 [Phaseolus lunatus]
4_60001_90000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL02-08-A23	At4g00180 / YABBY3 axial regulator -related		At4g00180 ,RAFL02-08-A23 axial regulator YABBY3 (YABBY3) identical to YABBY3 [Arabidopsis thaliana] GI:4928753
1_7860001_7890000					A	B	C	D	P	P'	N
	Cluster:4-0				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-09-I09	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL09-09-I09 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
		RAFL06-07-O03	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL06-07-O03 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
3_3900001_3930000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	1	4352	0.012636807	0.025273614	2
		RAFL11-02-J20	At3g12260 / expressed protein		At3g12260 ,RAFL11-02-J20 complex 1 family protein / LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family)
		RAFL09-10-O11	At3g12260 / expressed protein		At3g12260 ,RAFL09-10-O11 complex 1 family protein / LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family)
1_10410001_10440000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-12-J23	At1g29800 / expressed protein		At1g29800 ,RAFL04-12-J23 zinc finger (FYVE type) family protein contains Pfam domain PF01363: FYVE zinc finger
3_5430001_5460000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL07-08-K09	At3g16000 / myosin heavy chain-related protein		RAFL07-08-K09 ,At3g16000 matrix-localized MAR DNA-binding protein-related similar to matrix-localized MAR DNA binding protein MFP1 GI:1771158 from [Lycopersicon esculentum]
5_19170001_19200000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-18-G17	At5g48030 / DnaJ protein GFA2, putative		At5g48030 ,RAFL07-18-G17 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI:21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats)
5_20640001_20670000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-09-D20	At5g51550 / expressed protein		RAFL09-09-D20 ,At5g51550 phosphate-responsive 1 family protein similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region
1_10290001_10320000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-10-N13	At1g29470 / dehydration-induced protein-related		RAFL07-10-N13 ,At1g29470 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
1_20760001_20790000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-12-J05	At1g56580 / expressed protein		At1g56580 ,RAFL06-12-J05 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
3_3000001_3300000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	10	4406	0.028285021	0.2828502	10
		RAFL04-16-N13	At3g09840 / transitional endoplasmic reticulum ATPase -related		At3g09840 ,RAFL04-16-N13 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}
		RAFL09-09-B17	At3g09850 / expressed protein		At3g09850 ,RAFL09-09-B17 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain
		RAFL05-14-I02	At3g10020 / expressed protein		RAFL05-14-I02 ,At3g10020 expressed protein
2_6780001_6810000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-04-A22	At2g15690 / expressed protein		At2g15690 ,RAFL05-04-A22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
3_19740001_19770000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL04-16-D08	At3g53260 / phenylalanine ammonia-lyase (PAL2)		At3g53260 ,RAFL04-16-D08 phenylalanine ammonia-lyase 2 (PAL2) nearly identical to SP|P45724
		RAFL09-11-L22	At3g53260 / phenylalanine ammonia-lyase (PAL2)		At3g53260 ,RAFL09-11-L22 phenylalanine ammonia-lyase 2 (PAL2) nearly identical to SP|P45724
2_15060001_15090000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-02-N24	At2g36000 / expressed protein		At2g36000 ,RAFL05-02-N24 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF
5_24000001_24030000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	5	4508	0.019410595	0.09705298	5
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
	Cluster:3-0				2	231	5	4425	0.044206142	0.2210307	5
		RAFL08-11-M03	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-11-M03 ,At5g60390 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL09-07-I03	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-07-I03 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
5_13380001_13410000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL03-03-L03	At5g35460 / expressed protein		At5g35460 ,RAFL03-03-L03 expressed protein
1_26280001_26310000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-18-E01	At1g70700 / expressed protein		RAFL05-18-E01 ,At1g70700 expressed protein
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-15-M06	At1g70700 / expressed protein		At1g70700 ,RAFL07-15-M06 expressed protein
4_3900001_4200000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
5_21390001_21420000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-13-C23	At5g53450 / protein kinase family		RAFL05-13-C23 ,At5g53450 protein kinase family protein contains protein kinase domain, Pfam:PF00069
5_5190001_5220000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL06-08-N16	At5g15960 / stress-induced protein KIN1		At5g15960 ,RAFL06-08-N16 stress-responsive protein (KIN1) / stress-induced protein (KIN1) identical to SP|P18612 Stress-induced KIN1 protein {Arabidopsis thaliana}
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-17-B12	At5g15970 / cold-regulated protein COR6.6 (stress-induced protein KIN2)		At5g15970 ,RAFL04-17-B12 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) identical to SP|P31169 Stress-induced KIN2 protein (Cold-induced COR6.6 protein) {Arabidopsis thaliana}
5_18000001_18300000					A	B	C	D	P	P'	N
	Cluster:5-0				2	75	7	4579	0.008988767	0.053932603	6
		RAFL07-11-O11	At5g45430 / protein kinase, putative		At5g45430 ,RAFL07-11-O11 protein kinase, putative contains similarity to male germ cell-associated kinase [Homo sapiens] gi|23268497|gb|AAN16405
		RAFL07-18-J19	At5g45500 / expressed protein		At5g45500 ,RAFL07-18-J19 expressed protein weak similarity to resistance complex protein I2C-2 [Lycopersicon esculentum] GI:2258317
	Cluster:1-2				2	172	7	4482	0.041940216	0.2516413	6
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
4_10200001_10500000					A	B	C	D	P	P'	N
	Cluster:5-0				3	74	11	4575	0.001382601	0.01382601	10
		RAFL06-08-A17	At4g21650 / subtilisin proteinase - like		RAFL06-08-A17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-13-C17	At4g21650 / subtilisin proteinase - like		RAFL09-13-C17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-06-N06	At4g21650 / subtilisin proteinase - like		RAFL09-06-N06 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
1_5820001_5850000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL08-10-M13	At1g17020 / oxidoreductase, 2OG-Fe(II) oxygenase family		At1g17020 ,RAFL08-10-M13 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI:311658], leucoanthocyanidin dioxygenase [Malus domestica][SP|P51091]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
5_18900001_18930000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-K14	At5g47320 / 40S ribosomal protein S19, mitochondrial precursor		At5g47320 ,RAFL05-21-K14 30S ribosomal protein S19, mitochondrial (RPS19)
5_20010001_20040000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
3_1200001_1500000					A	B	C	D	P	P'	N
	Cluster:3-1				5	211	17	4430	0.0028076097	0.039306536	14
		RAFL04-15-F24	At3g04890 / expressed protein		RAFL04-15-F24 ,At3g04890 expressed protein
		RAFL05-19-G22	At3g05180 / GDSL-motif lipase/hydrolase protein		RAFL05-19-G22 ,At3g05180 GDSL-motif lipase/hydrolase family protein similar to early nodulin ENOD8 [Medicago sativa] GI:304037, elicitor-induced glycoprotein iEP4 [Daucus carota] GI:1911765, lanatoside 15'-O-acetylesterase [Digitalis lanata] GI:3688284; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
		RAFL07-18-H24	At3g04910 / protein kinase family		At3g04910 ,RAFL07-18-H24 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL04-09-I16	At3g04770 / 40S ribosomal protein SA (RPSaB)		RAFL04-09-I16 ,At3g04770 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum]
		RAFL05-02-H23	At3g05050 / cyclin-dependent protein kinase -related		RAFL05-02-H23 ,At3g05050 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain
5_18510001_18540000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-11-E07	At5g46390 / Photosystem II D1 protein processing enzyme I (C-terminal processing protease),putative (ctpA)		At5g46390 ,RAFL06-11-E07 peptidase S41 family protein similar to C-terminal peptidase of the D1 protein [Hordeum vulgare subsp vulgare] GI:1296805; contains Pfam profiles PF03572: Peptidase family S41B, PF00595: PDZ domain (Also known as DHR or GLGF)
3_18030001_18060000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-15-L13	At3g48690 / expressed protein		At3g48690 ,RAFL08-15-L13 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
2_16170001_16200000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-10-A08	At2g38820 / expressed protein		RAFL06-10-A08 ,At2g38820 expressed protein contains Pfam profile PF04720: Protein of unknown function (DUF506)
5_5970001_6000000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-N18	At5g18130 / expressed protein		At5g18130 ,RAFL05-05-N18 expressed protein similar to unknown protein (gb|AAF00631.1)
4_17070001_17100000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-15-N01	At4g38810 / calcium-binding EF-hand family protein		RAFL08-15-N01 ,At4g38810 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain
2_9330001_9360000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-08-M09	At2g22080 / En/Spm-related transposon protein		RAFL06-08-M09 ,At2g22080 expressed protein
5_8670001_8700000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL08-08-K02	At5g25190 / ethylene responsive element binding protein, putative		At5g25190 ,RAFL08-08-K02 ethylene-responsive element-binding protein, putative ethylene responsive element binding protein homolog, Stylosanthes hamata, EMBL:U91857
4_11730001_11760000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	3	4486	0.012852948	0.038558844	3
		RAFL06-12-A10	At4g24770 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		RAFL06-12-A10 ,At4g24770 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
		RAFL06-13-H14	At4g24770 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		RAFL06-13-H14 ,At4g24770 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	Cluster:6-1				2	313	3	4345	0.039689664	0.11906899	3
		RAFL05-08-I15	At4g24820 / 26S proteasome regulatory subunit (RPN7), putative		At4g24820 ,RAFL05-08-I15 26S proteasome regulatory subunit, putative (RPN7) contains similarity to ubiquitin activating enzyme GI:3647283 from [Lycopersicon esculentum]
		RAFL07-13-D20	At4g24820 / 26S proteasome regulatory subunit (RPN7), putative		RAFL07-13-D20 ,At4g24820 26S proteasome regulatory subunit, putative (RPN7) contains similarity to ubiquitin activating enzyme GI:3647283 from [Lycopersicon esculentum]
2_13950001_13980000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	3	4525	0.007856598	0.023569794	3
		RAFL04-09-L21	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-09-L21 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL06-12-H10	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL06-12-H10 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
	Cluster:3-0				2	231	3	4427	0.02249133	0.067473985	3
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
	Cluster:3-2				1	36	4	4622	0.039065886	0.11719766	3
		RAFL07-11-K21	At2g32990 / glycosyl hydrolase family 9		At2g32990 ,RAFL07-11-K21 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa]
4_17220001_17250000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	2	4485	0.008083649	0.024250947	3
		RAFL04-12-A03	At4g39220 / AtRer1A		RAFL04-12-A03 ,At4g39220 RER1A protein identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana}
		RAFL02-09-D23	At4g39200 / 40S ribosomal protein S25 (RPS25E)		RAFL02-09-D23 ,At4g39200 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2:S40089
2_2580001_2610000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-19-N12	At2g06520 / expressed protein		At2g06520 ,RAFL05-19-N12 membrane protein, putative contains 2 transmembrane domains;
4_16350001_16380000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-17-E16	At4g36920 / floral homeotic protein APETALA2		At4g36920 ,RAFL04-17-E16 floral homeotic protein APETALA2 (AP2) Identical to (SP:P47927) Floral homeotic protein APETALA2. [Mouse-ear cress] {Arabidopsis thaliana}
5_5730001_5760000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL08-11-P07	At5g17460 / expressed protein		At5g17460 ,RAFL08-11-P07 expressed protein
2_18360001_18390000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	2	4379	0.02015854	0.06047562	3
		RAFL08-09-K17	At2g44670 / senescence-associated protein -related		RAFL08-09-K17 ,At2g44670 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana];
		RAFL08-18-G13	At2g44680 / casein kinase II beta chain, putative		RAFL08-18-G13 ,At2g44680 casein kinase II beta chain, putative similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana] SWISS-PROT:O81275
3_21630001_21660000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	1	4352	0.012636807	0.025273614	2
		RAFL05-17-H16	At3g58560 / endonuclease/exonuclease/phosphatase family		RAFL05-17-H16 ,At3g58560 endonuclease/exonuclease/phosphatase family protein similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family
		RAFL05-18-J06	At3g58500 / protein phosphatase PP2A catalytic subunit		At3g58500 ,RAFL05-18-J06 serine/threonine protein phosphatase PP2A-4 catalytic subunit (PP2A4) identical to SP|P48578 Serine/threonine protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 4) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase
4_16320001_16350000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-16-J11	At4g36870 / BEL1-like homeobox 2 protein (BLH2)		RAFL07-16-J11 ,At4g36870 BEL1-like homeobox 2 protein (BLH2)
5_1350001_1380000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-16-C02	At5g04760 / myb family transcription factor		RAFL08-16-C02 ,At5g04760 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
1_11070001_11100000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL09-13-M20	At1g31070 / UDP-N-acetylglucosamine pyrophosphorylase-related protein		At1g31070 ,RAFL09-13-M20 UDP-N-acetylglucosamine pyrophosphorylase-related low similarity to SP|P43123 UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) {Saccharomyces cerevisiae}
2_1770001_1800000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	0	4586	0.016512975	0.016512975	1
		RAFL09-06-E05	At2g05070 / light-harvesting chlorophyll a/b binding protein		At2g05070 ,RAFL09-06-E05 chlorophyll A-B binding protein / LHCII type II (LHCB2.2) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741946; contains Pfam profile PF00504: Chlorophyll A-B binding protein
3_23010001_23040000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-19-C07	At3g62120 / multifunctional aminoacyl-tRNA ligase-related protein		At3g62120 ,RAFL04-19-C07 tRNA synthetase class II (G, H, P and S) family protein similar to SP|P07814 Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] {Homo sapiens}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF03129: Anticodon binding domain
4_6840001_6870000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-19-L09	At4g13580 / disease resistance response protein-related		RAFL04-19-L09 ,At4g13580 disease resistance-responsive family protein contains similarity to pathogenesis-related protein [Pisum sativum] gi|4585273|gb|AAD25355
1_9000001_12000000					A	B	C	D	P	P'	N
	Cluster:0-2				10	69	106	4478	2.0901884E-5	6.2705646E-4	30
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
	Cluster:7-2				6	58	110	4489	0.004819321	0.14457963	30
		RAFL02-08-M10	At1g32640 / bHLH protein (RAP-1)		At1g32640 ,RAFL02-08-M10 basic helix-loop-helix (bHLH) protein (RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368 from [Arabidopsis thaliana]
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
		RAFL05-14-E08	At1g31130 / expressed protein		RAFL05-14-E08 ,At1g31130 expressed protein
	Cluster:1-2				9	165	107	4382	0.039779697	1.193391	30
		RAFL05-01-F04	At1g30380 / photosystem I subunit X precursor		At1g30380 ,RAFL05-01-F04 photosystem I reaction center subunit psaK, chloroplast, putative / photosystem I subunit X, putative / PSI-K, putative (PSAK) identical to SP|Q9SUI5; strong similarity to SP|P36886 Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (Light-harvesting complex I 7 kDa protein){Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL04-12-J05	At1g32990 / ribosomal protein L11p family		RAFL04-12-J05 ,At1g32990 ribosomal protein L11 family protein similar to chloroplast ribosomal protein L11 GI:21312 from [Spinacia oleracea]
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL09-12-E12	At1g27480 / expressed protein		At1g27480 ,RAFL09-12-E12 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to LCAT-like lysophospholipase (LLPL) [Homo sapiens] GI:4589720; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase)
		RAFL05-03-J07	At1g27400 / 60S ribosomal protein L17 (RPL17A)		At1g27400 ,RAFL05-03-J07 60S ribosomal protein L17 (RPL17A) similar to GB:P51413 from [Arabidopsis thaliana]; similar to ESTs gb|L33542 and gb|AA660016
		RAFL04-18-B02	At1g31420 / leucine-rich repeat transmembrane protein kinase, putative		RAFL04-18-B02 ,At1g31420 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profile: PF00069: Eukaryotic protein kinase domain
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
2_9900001_10200000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	3	4607	0.044709165	0.17883666	4
		RAFL05-15-F12	At2g24020 / expressed protein		RAFL05-15-F12 ,At2g24020 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718
5_16380001_16410000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	0	4430	1.2323643E-4	1.2323643E-4	1
		RAFL09-11-F01	At5g41685 / expressed protein		At5g41685 ,RAFL09-11-F01 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) identical to SP|Q9ASY8 Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) {Arabidopsis thaliana}
		RAFL04-13-A06	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-13-A06 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
		RAFL04-17-A10	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-17-A10 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
1_930001_960000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-17-L19	At1g03740 / protein kinase family		RAFL09-17-L19 ,At1g03740 protein kinase family protein contains protein kinase domain, Pfam:PF00069
5_24390001_24420000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-O08	At5g61410 / ribulose-5-phosphate-3-epimerase		At5g61410 ,RAFL05-21-O08 ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, putative strong similarity to SP|Q43157 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family
4_5220001_5250000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-21-G15	At4g10040 / cytochrome c		RAFL05-21-G15 ,At4g10040 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
1_9930001_9960000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
3_7830001_7860000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
4_13350001_13380000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
5_1680001_1710000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-19-J21	At5g05690 / cytochrome p450 90A1		RAFL04-19-J21 ,At5g05690 cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD) identical to Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
2_8370001_8400000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-19-G09	At2g19480 / nucleosome assembly protein -related		RAFL05-19-G09 ,At2g19480 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP)
5_2610001_2640000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-09-E11	At5g08180 / ribosomal protein L7Ae family		At5g08180 ,RAFL04-09-E11 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
1_3000001_3300000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	19	4612	0.008833496	0.13250244	15
		RAFL06-15-H16	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL06-15-H16 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
		RAFL05-18-A06	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL05-18-A06 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
	Cluster:5-2				3	123	18	4519	0.017953994	0.2693099	15
		RAFL08-12-B13	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-12-B13 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
		RAFL04-12-J12	At1g09290 / hypothetical protein		RAFL04-12-J12 ,At1g09290 expressed protein This gene is continued on the 5' end of BAC T12M14
		RAFL08-13-D11	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-13-D11 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
4_2700001_2730000					A	B	C	D	P	P'	N
	Cluster:8-1				4	158	0	4501	1.4052555E-6	1.4052555E-6	1
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
5_21330001_21360000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL04-15-I01	At5g53350 / ATP-dependent Clp protease ATP-binding subunit ClpX1		At5g53350 ,RAFL04-15-I01 ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) identical to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana]
		RAFL03-08-G12	At5g53330 / proline-rich cell wall protein-related		RAFL03-08-G12 ,At5g53330 expressed protein
1_6090001_6120000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL07-09-N02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL07-09-N02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL11-04-J02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL11-04-J02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
5_180001_210000					A	B	C	D	P	P'	N
	Cluster:1-2				5	169	3	4486	3.4945413E-6	1.0483624E-5	3
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
	Cluster:9-0				2	30	6	4625	0.0012451953	0.0037355858	3
		RAFL08-13-G20	At5g01520 / C3HC4-type zinc finger protein family		At5g01520 ,RAFL08-13-G20 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL09-17-E14	At5g01520 / C3HC4-type zinc finger protein family		RAFL09-17-E14 ,At5g01520 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
5_26370001_26400000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL08-10-E21	At5g66780 / expressed protein		At5g66780 ,RAFL08-10-E21 expressed protein
4_15120001_15150000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-19-K24	At4g33666 / expressed protein		At4g33666 ,RAFL05-19-K24 expressed protein
3_1230001_1260000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL03-05-K01	At3g04610 / KH domain protein		RAFL03-05-K01 ,At3g04610 KH domain-containing protein similar putative nucleic acid binding protein GB:CAB39665 [Arabidopsis thaliana]; Pfam HMM hit: KH domain family of RNA binding proteins
1_26910001_26940000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-09-J23	At1g72450 / expressed protein		At1g72450 ,RAFL05-09-J23 expressed protein
5_24210001_24240000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-13-P05	At5g60920 / phytochelatin synthetase - like protein		At5g60920 ,RAFL09-13-P05 phytochelatin synthetase, putative / COBRA cell expansion protein COB, putative similar to phytochelatin synthetase GI:29570314; similar to GB:AAK56072; identified in Roudier, et al, Plant Phys. (2002) 130:538-548 (PMID:12376623); identical to cDNA putative phytochelatin synthetase GI:3559804; contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region
3_21150001_21180000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-O16	At3g57150 / pseudouridine synthase (NAP57) -related		At3g57150 ,RAFL08-12-O16 dyskerin, putative / nucleolar protein NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus}; contains Pfam profiles PF01509: TruB family pseudouridylate synthase (N terminal domain), PF01472: PUA domain; supporting cDNA gi|8901185|gb|AF234984.2|AF234984
3_840001_870000					A	B	C	D	P	P'	N
	Cluster:5-1				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-21-L06	At3g03570 / expressed protein		RAFL05-21-L06 ,At3g03570 expressed protein similar to hypothetical protein GB:CAB38918 [Arabidopsis thaliana]
		RAFL05-03-L14	At3g03530 / phosphoesterase family		At3g03530 ,RAFL05-03-L14 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family
1_21600001_21900000					A	B	C	D	P	P'	N
	Cluster:4-2				2	133	5	4523	0.015882019	0.09529211	6
		RAFL04-19-B12	At1g60230 / expressed protein		At1g60230 ,RAFL04-19-B12 radical SAM domain-containing protein contains Pfam profile PF04055: radical SAM domain protein
		RAFL07-11-G02	At1g60220 / Ulp1 protease family		At1g60220 ,RAFL07-11-G02 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain
1_240001_270000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL05-19-I05	At1g01720 / No apical meristem (NAM) protein family		RAFL05-19-I05 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
		RAFL07-07-G15	At1g01720 / No apical meristem (NAM) protein family		RAFL07-07-G15 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
2_14100001_14400000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	6	4625	0.047089677	0.32962775	7
		RAFL05-14-E15	At2g33590 / cinnamoyl-CoA reductase family		At2g33590 ,RAFL05-14-E15 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Eucalyptus gunnii [GI:2058311]
5_18930001_18960000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-12-G20	At5g47420 / expressed protein		RAFL08-12-G20 ,At5g47420 expressed protein contains Pfam domain, PF01987: Protein of unknown function
1_20400001_20700000					A	B	C	D	P	P'	N
	Cluster:4-0				4	236	10	4413	0.004549386	0.040944476	9
		RAFL07-11-O12	At1g56070 / elongation factor -related		RAFL07-11-O12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL09-07-M23	At1g55840 / sec14 cytosolic factor, putative (phosphoglyceride transfer protein, putative)		At1g55840 ,RAFL09-07-M23 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GB:AAB94598) [Glycine max]; identified in Eur J Biochem 1998 Dec 1;258(2):402-10 as AtSEC14, characterized by functional complementation in S. cerevisiae.
		RAFL07-10-E15	At1g56280 / drought-induced protein -related		At1g56280 ,RAFL07-10-E15 drought-responsive family protein contains an AT-AC intron 3, potentially contains a frameshift. An alternate model provides a translation more consistent with homologous proteins but lacks the AT-AC intron; similar to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321
		RAFL04-17-N12	At1g56070 / elongation factor -related		RAFL04-17-N12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	Cluster:3-0				3	230	11	4419	0.029778728	0.26800856	9
		RAFL08-12-J19	At1g56070 / elongation factor -related		RAFL08-12-J19 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-13-C01	At1g56070 / elongation factor -related		RAFL04-13-C01 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL07-10-D07	At1g56070 / elongation factor -related		RAFL07-10-D07 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
5_16500001_16800000					A	B	C	D	P	P'	N
	Cluster:0-0				3	33	14	4613	2.668717E-4	0.0034693324	13
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	Cluster:9-2				2	65	15	4581	0.024071941	0.31293523	13
		RAFL07-12-N12	At5g42570 / expressed protein		At5g42570 ,RAFL07-12-N12 expressed protein low similarity to SP|P51572 B-cell receptor-associated protein 31 (6C6-AG tumor-associated antigen) (DXS1357E) {Homo sapiens}
		RAFL06-07-D06	At5g42050 / expressed protein		RAFL06-07-D06 ,At5g42050 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
1_11790001_11820000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL02-08-M10	At1g32640 / bHLH protein (RAP-1)		At1g32640 ,RAFL02-08-M10 basic helix-loop-helix (bHLH) protein (RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368 from [Arabidopsis thaliana]
3_2820001_2850000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL07-18-J05	At3g09210 / expressed protein		At3g09210 ,RAFL07-18-J05 KOW domain-containing transcription factor family protein ; est match
		RAFL04-15-D01	At3g09200 / 60S acidic ribosomal protein P0 (RPP0B)		At3g09200 ,RAFL04-15-D01 60S acidic ribosomal protein P0 (RPP0B) similar to putative 60S acidic ribosomal protein P0 GB:P50346 [Glycine max]
3_5070001_5100000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-05-A18	At3g15070 / C3HC4-type zinc finger protein family		At3g15070 ,RAFL05-05-A18 zinc finger (C3HC4-type RING finger) family protein similar to C-terminal zinc-finger [Glycine max] GI:558543; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
3_10080001_10110000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-20-J16	At3g27300 / glucose-6-phosphate 1-dehydrogenase -related		RAFL04-20-J16 ,At3g27300 glucose-6-phosphate 1-dehydrogenase / G6PD (ACG9) identical to glucose-6-phosphate 1-dehydrogenase (acg9) [Arabidopsis thaliana] GI:5732195
5_24810001_24840000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL07-13-D23	At5g62530 / delta-1-pyrroline-5-carboxylate dehydrogenase		At5g62530 ,RAFL07-13-D23 delta-1-pyrroline-5-carboxylate dehydrogenase (P5CDH) identical to delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Arabidopsis thaliana] gi|15383744|gb|AAK73756; identical to cDNA delta-1-pyrroline-5-carboxylate dehydrogenase precursor (P5CDH) nuclear gene for mitochondrial product GI:15383743; contains Pfam profile PF00171:aldehyde dehydrogenase (NAD) family protein
		RAFL05-02-G23	At5g62540 / ubiquitin-conjugating enzyme 3 (UBC3)		RAFL05-02-G23 ,At5g62540 ubiquitin-conjugating enzyme 3 (UBC3) E2; identical to gi:431261, SP:P42746
5_9030001_9060000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	4	4426	0.032636177	0.1305447	4
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
4_16830001_16860000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
2_1140001_1170000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-01-D08	At2g03760 / steroid sulfotransferase, putative		RAFL05-01-D08 ,At2g03760 steroid sulfotransferase, putative strong similarity to steroid sulfotransferases from [Brassica napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam profile PF00685: Sulfotransferase domain
1_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-N09	At1g21380 / expressed protein		At1g21380 ,RAFL05-07-N09 VHS domain-containing protein / GAT domain-containing protein weak similarity to Hrs [Rattus norvegicus] GI:8547026; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain
1_21180001_21210000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-07-O19	At1g58270 / expressed protein		RAFL09-07-O19 ,At1g58270 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
5_23100001_23400000					A	B	C	D	P	P'	N
	Cluster:5-1				5	277	20	4361	0.015251257	0.2135176	14
		RAFL06-11-A21	At5g58220 / unknown protein (pir||T34863) -related		At5g58220 ,RAFL06-11-A21 expressed protein
		RAFL04-09-A13	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL04-09-A13 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL09-09-K03	At5g58110 / expressed protein		RAFL09-09-K03 ,At5g58110 expressed protein predicted proteins, Homo sapiens and Drosophila melanogaster
		RAFL11-11-A11	At5g58130 / RRM-containing protein		At5g58130 ,RAFL11-11-A11 RNA recognition motif (RRM)-containing protein
		RAFL08-08-O08	At5g57960 / GTP binding protein-related		RAFL08-08-O08 ,At5g57960 GTP-binding family protein similar to SP|P25519 GTP-binding protein hflX {Escherichia coli}
4_16050001_16080000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	0	4430	0.0024866017	0.0024866017	1
		RAFL09-10-P09	At4g36130 / 60S ribosomal protein L8 (RPL8C)		At4g36130 ,RAFL09-10-P09 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8
		RAFL09-12-B12	At4g36130 / 60S ribosomal protein L8 (RPL8C)		At4g36130 ,RAFL09-12-B12 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8
1_3600001_3630000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-13-M08	At1g10840 / translation initiation factor -related		At1g10840 ,RAFL05-13-M08 eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to SP|Q9C5Z2 Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
4_1320001_1350000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-09-K08	At4g02990 / expressed protein		At4g02990 ,RAFL04-09-K08 mitochondrial transcription termination factor family protein / mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI:4584695; contains Pfam profile PF02536: mTERF
2_2700001_3000000					A	B	C	D	P	P'	N
	Cluster:0-1				3	103	3	4554	2.1731186E-4	8.692474E-4	4
		RAFL11-02-K17	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL11-02-K17 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL08-17-A06	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL08-17-A06 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL07-10-G09	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL07-10-G09 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
1_11310001_11340000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-08-C03	At1g31580 / ORF1		At1g31580 ,RAFL06-08-C03 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905
1_18690001_18720000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-02-C01	At1g51570 / C2 domain-containing protein		At1g51570 ,RAFL03-02-C01 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain
5_25080001_25110000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-15-E10	At5g63400 / adenylate kinase		At5g63400 ,RAFL04-15-E10 adenylate kinase identical to adenylate kinase (ATP-AMP transphosphorylase) [Arabidopsis thaliana] SWISS-PROT:O82514
1_25860001_25890000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	0	4419	0.00272746	0.00272746	1
		RAFL04-15-N01	At1g69740 / porphobilinogen synthase (delta-aminolevulinic acid dehydratase), putative		RAFL04-15-N01 ,At1g69740 porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative similar to delta-aminolevulinic acid dehydratase (Alad) GI:493019 [SP|P43210] from Glycine max, SP|P24493 from Spinacia oleracea, SP|P30124 from Pisum sativum
		RAFL05-10-J03	At1g69740 / porphobilinogen synthase (delta-aminolevulinic acid dehydratase), putative		At1g69740 ,RAFL05-10-J03 porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative similar to delta-aminolevulinic acid dehydratase (Alad) GI:493019 [SP|P43210] from Glycine max, SP|P24493 from Spinacia oleracea, SP|P30124 from Pisum sativum
5_19440001_19470000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-B03	At5g48655 / C3HC4-type zinc finger protein family		At5g48655 ,RAFL05-07-B03 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
3_21810001_21840000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-D05	At3g59040 / pentatricopeptide (PPR) repeat-containing protein		RAFL05-21-D05 ,At3g59040 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
2_18750001_18780000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-05-A21	At2g45660 / MADS-box protein (AGL20)		At2g45660 ,RAFL05-05-A21 MADS-box protein (AGL20)
2_16500001_16800000					A	B	C	D	P	P'	N
	Cluster:6-1				4	311	13	4335	0.024095291	0.31323877	13
		RAFL05-16-M24	At2g39950 / expressed protein		RAFL05-16-M24 ,At2g39950 expressed protein
		RAFL05-12-M22	At2g39760 / expressed protein		RAFL05-12-M22 ,At2g39760 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL06-11-M10	At2g40060 / expressed protein		RAFL06-11-M10 ,At2g40060 expressed protein
		RAFL11-05-B04	At2g39780 / S-like ribonuclease RNS2		RAFL11-05-B04 ,At2g39780 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459)
4_5700001_6000000					A	B	C	D	P	P'	N
	Cluster:10-2				3	106	5	4549	6.388735E-4	0.003833241	6
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL05-09-D16	At4g11220 / expressed protein		At4g11220 ,RAFL05-09-D16 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
2_18900001_19200000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	12	4587	0.015175772	0.16693349	11
		RAFL09-12-N16	At2g46510 / bHLH protein family		RAFL09-12-N16 ,At2g46510 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain
		RAFL05-09-M21	At2g46470 / OXA1 protein (OXA1p), putative		RAFL05-09-M21 ,At2g46470 OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI:10176922
1_3840001_3870000					A	B	C	D	P	P'	N
	Cluster:8-1				2	160	0	4501	0.0011997843	0.0011997843	1
		RAFL05-01-K10	At1g11480 / expressed protein		RAFL05-01-K10 ,At1g11480 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
		RAFL05-19-M23	At1g11480 / expressed protein		At1g11480 ,RAFL05-19-M23 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
5_6660001_6690000					A	B	C	D	P	P'	N
	Cluster:1-2				2	172	3	4486	0.012852948	0.051411793	4
		RAFL05-07-F17	At5g19780 / tubulin alpha-3/alpha-5 chain (TUA5)		At5g19780 ,RAFL05-07-F17 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL06-09-F20	At5g19770 / tubulin alpha-3/alpha-5 chain (TUA3)		At5g19770 ,RAFL06-09-F20 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
4_17160001_17190000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-21-M07	At4g39090 / cysteine proteinase RD19A		RAFL05-21-M07 ,At4g39090 cysteine proteinase RD19a (RD19A) / thiol protease identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from [Arabidopsis thaliana]
2_9600001_9900000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	7	4516	0.028056826	0.22445461	8
		RAFL09-11-N16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-11-N16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
		RAFL09-14-O16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-14-O16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
3_5850001_5880000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-16-C11	At3g17170 / (RFC3) RPS6-related protein		At3g17170 ,RAFL05-16-C11 ribosomal protein S6 family protein (RFC3) annotation temporarily based on supporting cDNA gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166 and Pfam PF01250 profiles ribosomal protein S6.
3_9390001_9420000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL03-08-F09	At3g25770 / allene oxide cyclase family		RAFL03-08-F09 ,At3g25770 allene oxide cyclase, putative / early-responsive to dehydration protein, putative / ERD protein, putative strong similarity to early-responsive to dehydration (ERD12) protein [GI:15320414]; similar to allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase
1_2850001_2880000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	1	4598	5.5148744E-4	0.0011029749	2
		RAFL09-16-N17	At1g08930 / ERD6 protein		RAFL09-16-N17 ,At1g08930 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
		RAFL05-18-E19	At1g08930 / ERD6 protein		At1g08930 ,RAFL05-18-E19 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
3_1200001_1230000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-08-P15	At3g04550 / expressed protein		RAFL05-08-P15 ,At3g04550 expressed protein
5_19050001_19080000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-08-K13	At5g47780 / glycosyltransferase family 8		At5g47780 ,RAFL07-08-K13 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8; strong similarity to unknown protein (emb|CAB71043.1)
1_3420001_3450000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-C02	At1g10430 / serine/threonine protein phosphatase, PP2A		At1g10430 ,RAFL07-13-C02 serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1) identical to SP|Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase
3_9660001_9690000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-18-K22	At3g26450 / major latex protein (MLP)-related		RAFL05-18-K22 ,At3g26450 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
5_2970001_3000000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	4	4510	0.013980698	0.05592279	4
		RAFL05-03-H12	At5g09660 / malate dehydrogenase, glyoxysomal		RAFL05-03-H12 ,At5g09660 malate dehydrogenase, glyoxysomal identical to SP|Q9ZP05; identical to cDNA microbody NAD-dependent malate dehydrogenase GI:3929650
		RAFL05-19-F17	At5g09650 / inorganic pyrophosphatase - like protein		At5g09650 ,RAFL05-19-F17 inorganic pyrophosphatase family protein similar to SP|Q15181 Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate {Homo sapiens}; contains Pfam profile PF00719: inorganic pyrophosphatase
1_22500001_22800000					A	B	C	D	P	P'	N
	Cluster:2-0				6	144	6	4507	7.901837E-7	4.741102E-6	6
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	Cluster:9-2				2	65	10	4586	0.012233394	0.07340036	6
		RAFL05-05-K10	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL05-05-K10 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL08-09-F22	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL08-09-F22 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
5_23400001_23700000					A	B	C	D	P	P'	N
	Cluster:9-0				3	29	14	4617	1.870712E-4	0.0022448543	12
		RAFL09-06-F09	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL09-06-F09 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL08-08-I08	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL08-08-I08 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL05-04-J20	At5g59320 / lipid transfer protein 3 (LTP 3)		RAFL05-04-J20 ,At5g59320 lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
3_660001_690000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-16-P14	At3g03050 / cellulose synthase family		RAFL09-16-P14 ,At3g03050 cellulose synthase family protein (CslD3) similar to cellulose synthase catalytic subunit gi:2827143 from [Arabidopsis thaliana], cellulose synthase-7 (gi:9622886) from Zea mays; contains Pfam profile PF03552: Cellulose synthase
2_4200001_4500000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	0	4627	5.79606E-5	5.79606E-5	1
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
2_11160001_11190000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-13-A16	At2g26340 / expressed protein		RAFL05-13-A16 ,At2g26340 expressed protein
2_300001_600000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	10	4409	0.027396575	0.2191726	8
		RAFL06-09-M14	At2g01680 / ankyrin repeat protein family		At2g01680 ,RAFL06-09-M14 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023
		RAFL04-13-G03	At2g02130 / plant defensin protein, putative (PDF2.3)		At2g02130 ,RAFL04-13-G03 plant defensin-fusion protein, putative (PDF2.3) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be)
		RAFL05-08-E12	At2g02100 / plant defensin protein, putative (PDF2.2)		RAFL05-08-E12 ,At2g02100 plant defensin-fusion protein, putative (PDF2.2) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT:O65740
3_1080001_1110000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-14-K01	At3g04120 / glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC)		RAFL06-14-K01 ,At3g04120 glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase identical to SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}
5_3210001_3240000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	2	4629	0.020451	0.061353	3
		RAFL06-14-F12	At5g10300 / hydrolase, alpha/beta fold family		RAFL06-14-F12 ,At5g10300 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, alpha-hydroxynitrile lyase [Manihot esculenta] GI:2780225; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	Cluster:10-1				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-09-N03	At5g10300 / hydrolase, alpha/beta fold family		RAFL05-09-N03 ,At5g10300 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, alpha-hydroxynitrile lyase [Manihot esculenta] GI:2780225; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
Cluster:5-2					A	B	C	D	P	P'	N
	1_14160001_14190000				3	123	3	4534	3.6307445E-4	0.0014522978	4
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
	1_14100001_14400000				3	123	3	4534	3.6307445E-4	0.0014522978	4
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
	5_4290001_4320000				2	124	4	4533	0.0101192035	0.030357612	3
		RAFL05-12-K10	At5g13460 / expressed protein		At5g13460 ,RAFL05-12-K10 calmodulin-binding family protein low similarity to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif
		RAFL06-10-G23	At5g13400 / peptide transporter - like protein		RAFL06-10-G23 ,At5g13400 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	1_3150001_3180000				2	124	4	4533	0.0101192035	0.050596017	5
		RAFL08-12-B13	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-12-B13 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
		RAFL08-13-D11	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-13-D11 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
	1_3000001_3300000				3	123	18	4519	0.017953994	0.2693099	15
		RAFL08-12-B13	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-12-B13 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
		RAFL04-12-J12	At1g09290 / hypothetical protein		RAFL04-12-J12 ,At1g09290 expressed protein This gene is continued on the 5' end of BAC T12M14
		RAFL08-13-D11	At1g09780 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL08-13-D11 ,At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
	1_17100001_17130000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL11-11-L21	At1g47640 / expressed protein		RAFL11-11-L21 ,At1g47640 expressed protein similar to seven transmembrane domain protein GI:3550427 from [Homo sapiens]
	5_24510001_24540000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-14-E20	At5g61780 / 100 kDa coactivator - like protein		At5g61780 ,RAFL07-14-E20 tudor domain-containing protein / nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: Staphylococcal nuclease homologue
	5_5490001_5520000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL06-09-I24	At5g16750 / transducin / WD-40 repeat protein family		RAFL06-09-I24 ,At5g16750 transducin family protein / WD-40 repeat family protein contains 8 WD-40 repeats (PF00400); similar to transducin homolog sazD - Homo sapiens, EMBL:U02609
	5_15120001_15150000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-15-O16	At5g38480 / 14-3-3 protein GF14 psi (grf3/RCI1)		RAFL04-15-O16 ,At5g38480 14-3-3 protein GF14 psi (GRF3) (RCI1) identical to 14-3-3 protein GF14 psi GI:1168200, SP:P42644
	2_14910001_14940000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-18-N23	At2g35650 / glycosyltransferase family 2		RAFL05-18-N23 ,At2g35650 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535; identical to cDNA for partial mRNA for glycosyltransferase (cslA07 gene) GI:28551963
	4_10770001_10800000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-20-J03	At4g22380 / Ribosomal protein L7Ae family		At4g22380 ,RAFL04-20-J03 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
	2_8610001_8640000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL06-16-K21	At2g20120 / expressed protein		RAFL06-16-K21 ,At2g20120 expressed protein contains Pfam domain, PF04367: Protein of unknown function (DUF502); identical to cDNA putative membrane protein COV (COV) GI:30059123
	2_11130001_11160000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-05-I17	At2g26300 / G protein alpha subunit 1 (GPA1)		RAFL05-05-I17 ,At2g26300 guanine nucleotide binding protein (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1) identical to SP|P18064 Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) {Arabidopsis thaliana}
	3_20040001_20070000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL08-12-E04	At3g54110 / uncoupling protein (ucp/PUMP)		At3g54110 ,RAFL08-12-E04 plant uncoupling mitochondrial protein (PUMP) identical to plant uncoupling mitochondrial protein [Arabidopsis thaliana] GI:3115108
	2_15690001_15720000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-13-O04	At2g37550 / arabidopsis pde1 suppressor 1 protein (Asp1)		At2g37550 ,RAFL04-13-O04 arabidopsis pde1 suppressor 1 protein (ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1) from GI:4519792 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP)
	4_930001_960000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-04-B19	At4g02150 / importin alpha-2 subunit		At4g02150 ,RAFL05-04-B19 importin alpha-2 subunit identical to importin alpha-2 subunit (Karyopherin alpha-2 subunit) (KAP alpha) SP:O04294 from [Arabidopsis thaliana]
	1_29070001_29100000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL09-16-F04	At1g78240 / dehydration-induced protein-related		At1g78240 ,RAFL09-16-F04 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
	4_780001_810000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-14-A18	At4g01850 / S-adenosylmethionine synthase 2		At4g01850 ,RAFL05-14-A18 S-adenosylmethionine synthetase 2 (SAM2) identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Arabidopsis thaliana] SWISS-PROT:P17562
	4_240001_270000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-12-C07	At4g00570 / malate oxidoreductase -related		At4g00570 ,RAFL07-12-C07 malate oxidoreductase, putative similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP:P37225) {Solanum tuberosum}
	1_10230001_10260000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL11-09-D24	At1g29310 / flower pigmentation protein ATAN11		At1g29310 ,RAFL11-09-D24 protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI:3057044; contains Pfam profile PF00344: eubacterial secY protein
	1_27510001_27540000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-13-F01	At1g74100 / sulfotransferase family		RAFL05-13-F01 ,At1g74100 sulfotransferase family protein similar to SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-) (F4-ST) {Flaveria chloraefolia}; contains Pfam profile PF00685: Sulfotransferase domain
	3_6540001_6570000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL02-06-C18	At3g19030 / expressed protein		At3g19030 ,RAFL02-06-C18 expressed protein contains similarity to phosphoserine aminotransferase GB:P19689 from [Yersinia enterocolitica]
	5_25620001_25650000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-03-E09	At5g64860 / glycosyl hydrolase family 77 (4-alpha-glucanotransferase)		At5g64860 ,RAFL05-03-E09 4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]
	2_16320001_16350000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-I05	At2g39220 / patatin family		At2g39220 ,RAFL07-13-I05 patatin family protein similar to patatin-like latex allergen [Hevea brasiliensis][PMID:10589016]; contains patatin domain PF01734
	1_27030001_27060000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-10-K19	At1g72750 / inner mitochondrial membrane protein		At1g72750 ,RAFL05-10-K19 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17
	4_16620001_16650000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-E01	At4g37640 / calcium-transporting ATPase 2, plasma membrane-type (Ca2+-ATPase, isoform 2)		RAFL07-13-E01 ,At4g37640 calcium-transporting ATPase 2, plasma membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical to SP|O81108 Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) {Arabidopsis thaliana}
	1_660001_690000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-16-O07	At1g02930 / glutathione transferase, putative		At1g02930 ,RAFL05-16-O07 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]
	1_3420001_3450000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-C02	At1g10430 / serine/threonine protein phosphatase, PP2A		At1g10430 ,RAFL07-13-C02 serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1) identical to SP|Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase
	3_17580001_17610000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-04-L01	At3g47670 / pectinesterase family		At3g47670 ,RAFL05-04-L01 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase from Arabidopsis thaliana SP|Q43867, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor
	5_4080001_4110000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-07-F01	At5g12940 / leucine rich repeat protein family		RAFL05-07-F01 ,At5g12940 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611
	5_5940001_5970000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-15-E17	At5g17990 / anthranilate phosphoribosyltransferase		At5g17990 ,RAFL07-15-E17 anthranilate phosphoribosyltransferase identical to anthranilate phosphoribosyltransferase, chloroplast precursor (EC 2.4.2.18) SP:Q02166 from [Arabidopsis thaliana]
	4_5160001_5190000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-12-D15	At4g09900 / hydrolase family		RAFL05-12-D15 ,At4g09900 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	3_21120001_21150000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-19-N16	At3g57070 / expressed protein		RAFL04-19-N16 ,At3g57070 glutaredoxin family protein contains Pfam profile PF00462: Glutaredoxin
	1_20430001_20460000				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-20-G22	At1g55805 / expressed protein		RAFL04-20-G22 ,At1g55805 BolA-like family protein contains Pfam profile: PF01722 BolA-like protein
	3_21300001_21600000				2	124	8	4529	0.028284373	0.19799061	7
		RAFL04-18-F04	At3g58010 / expressed protein		At3g58010 ,RAFL04-18-F04 expressed protein
		RAFL05-19-J18	At3g58130 / hypothetical protein		RAFL05-19-J18 ,At3g58130 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related similar to SP|Q9Y2B2 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) {Homo sapiens}
	4_10500001_10800000				2	124	8	4529	0.028284373	0.22627498	8
		RAFL08-16-K20	At4g21990 / 5'-adenylylsulfate reductase (APR3)		RAFL08-16-K20 ,At4g21990 5'-adenylylsulfate reductase (APR3) / PAPS reductase homolog (PRH26) identical to 5'-adenylylsulfate reductase [Arabidopsis thaliana] GI:2738760; identical to cDNA PAPS reductase homolog (PRH26) GI:1710113
		RAFL04-20-J03	At4g22380 / Ribosomal protein L7Ae family		At4g22380 ,RAFL04-20-J03 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
	5_22800001_23100000				2	124	9	4528	0.03396712	0.30570406	9
		RAFL03-10-B01	At5g57120 / expressed protein		At5g57120 ,RAFL03-10-B01 expressed protein weak similarity to SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
		RAFL04-15-B08	At5g57370 / expressed protein		At5g57370 ,RAFL04-15-B08 expressed protein low similarity to nucleic acid binding protein [Homo sapiens] GI:431953
	5_25500001_25800000				2	124	10	4527	0.040051516	0.44056666	11
		RAFL05-21-E11	At5g64740 / cellulose synthase, catalytic subunit, putative		RAFL05-21-E11 ,At5g64740 cellulose synthase, catalytic subunit, putative similar to gi:2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis thaliana
		RAFL05-03-E09	At5g64860 / glycosyl hydrolase family 77 (4-alpha-glucanotransferase)		At5g64860 ,RAFL05-03-E09 4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]
	4_11100001_11400000				2	124	11	4526	0.04651208	0.46512076	10
		RAFL05-03-G03	At4g23650 / calcium-dependent protein kinase, putative (CDPK)		At4g23650 ,RAFL05-03-G03 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL06-08-L06	At4g23480 / unknown similar to AGI		RAFL06-08-L06 ,At4g23480 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL06-08-L06
	1_12000001_15000000				3	123	28	4509	0.049966265	0.749494	15
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
Cluster:8-0					A	B	C	D	P	P'	N
	5_23970001_24000000				4	105	0	4554	2.827725E-7	2.827725E-7	1
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
	4_16800001_16830000				3	106	0	4554	1.243132E-5	1.243132E-5	1
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
	5_23700001_24000000				4	105	9	4545	1.7171161E-4	0.0012019812	7
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
	5_21600001_21630000				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
	5_25050001_25080000				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL07-11-G07	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL07-11-G07 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
		RAFL04-10-G08	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL04-10-G08 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
	5_15540001_15570000				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
	5_21000001_24000000				10	99	132	4422	0.0016193746	0.043723114	27
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
		RAFL09-18-G19	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL09-18-G19 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-15-K08	At5g57655 / expressed protein		At5g57655 ,RAFL05-15-K08 xylose isomerase family protein contains similarity to Xylose isomerase (EC 5.3.1.5) (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
		RAFL05-19-H13	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL05-19-H13 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-17-B18	At5g56750 / Ndr family		RAFL07-17-B18 ,At5g56750 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus}; contains Pfam profile PF03096: Ndr family
		RAFL09-09-G23	At5g58730 / pfkB type carbohydrate kinase protein family		RAFL09-09-G23 ,At5g58730 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL08-12-G17	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL08-12-G17 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
		RAFL07-10-L02	At5g60360 / cysteine proteinase AALP		At5g60360 ,RAFL07-10-L02 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain
	4_16800001_17100000				4	105	22	4532	0.0028403332	0.036924332	13
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
	5_15300001_15600000				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
	3_15990001_16020000				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL06-13-E03	At3g44300 / nitrilase 2		RAFL06-13-E03 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
		RAFL08-10-H06	At3g44300 / nitrilase 2		RAFL08-10-H06 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
	4_15000001_18000000				10	99	149	4405	0.003731767	0.11568478	31
		RAFL05-02-B21	At4g37430 / cytochrome P450 91A2		RAFL05-02-B21 ,At4g37430 cytochrome P450 81F1 (CYP81F1) (CYP91A2) identical to cytochrome P450 81F1 (91A2) (SP:O65790) [Arabidopsis thaliana]
		RAFL08-19-J11	At4g39140 / expressed protein		At4g39140 ,RAFL08-19-J11 expressed protein
		RAFL09-18-B09	At4g36760 / aminopeptidase-related protein		RAFL09-18-B09 ,At4g36760 aminopeptidase P similar to Xaa-Pro aminopeptidase 2 [Lycopersicon esculentum] GI:15384991; contains Pfam profile PF00557: metallopeptidase family M24
		RAFL05-09-P15	At4g33540 / hydrolase family		RAFL05-09-P15 ,At4g33540 metallo-beta-lactamase family protein
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL05-21-M07	At4g39090 / cysteine proteinase RD19A		RAFL05-21-M07 ,At4g39090 cysteine proteinase RD19a (RD19A) / thiol protease identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from [Arabidopsis thaliana]
		RAFL11-13-G16	At4g36210 / expressed protein		RAFL11-13-G16 ,At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726)
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
	3_15900001_16200000				2	107	3	4551	0.005170766	0.020683063	4
		RAFL06-13-E03	At3g44300 / nitrilase 2		RAFL06-13-E03 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
		RAFL08-10-H06	At3g44300 / nitrilase 2		RAFL08-10-H06 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
	1_25500001_25800000				2	107	7	4547	0.017509907	0.14007926	8
		RAFL09-13-J20	At1g69410 / Eukaryotic initiation factor 5A -related		RAFL09-13-J20 ,At1g69410 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
		RAFL08-11-M15	At1g69360 / expressed protein		RAFL08-11-M15 ,At1g69360 expressed protein
	5_17100001_17400000				2	107	8	4546	0.021556646	0.12933987	6
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
		RAFL04-17-M08	At5g43450 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL04-17-M08 ,At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967)
	4_16560001_16590000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-02-B21	At4g37430 / cytochrome P450 91A2		RAFL05-02-B21 ,At4g37430 cytochrome P450 81F1 (CYP81F1) (CYP91A2) identical to cytochrome P450 81F1 (91A2) (SP:O65790) [Arabidopsis thaliana]
	1_23760001_23790000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-16-D24	At1g64950 / cytochrome P450, putative		At1g64950 ,RAFL09-16-D24 cytochrome P450, putative similar to cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602) [Arabidopsis thaliana];similar to cytochrome P450 (GI:438242) [Solanum melongena]
	3_19170001_19200000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-16-C19	At3g51730 / expressed protein		RAFL06-16-C19 ,At3g51730 saposin B domain-containing protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
	1_6780001_6810000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-E15	At1g19660 / expressed protein		At1g19660 ,RAFL05-07-E15 wound-responsive family protein similar to wound inducive gene (GI:8096273)[Nicotiana tabacum]
	5_16140001_16170000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
	4_13560001_13590000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-15-C16	At4g29820 / mRNA cleavage factor subunit - like protein		At4g29820 ,RAFL05-15-C16 expressed protein
	1_19710001_19740000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-04-F24	At1g53910 / AP2 domain protein RAP2.12		At1g53910 ,RAFL05-04-F24 AP2 domain-containing protein RAP2.12 (RAP2.12) identical to AP2 domain containing protein GI:2281649 from [Arabidopsis thaliana]
	3_4470001_4500000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-08-G19	At3g13672 / seven in absentia (sina) protein family		At3g13672 ,RAFL05-08-G19 seven in absentia (SINA) family protein low similarity to SP|P21461 Developmental protein seven in absentia {Drosophila melanogaster}; contains Pfam profile PF03145: Seven in absentia protein family
	4_11520001_11550000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-14-G13	At4g24220 / expressed protein		RAFL07-14-G13 ,At4g24220 expressed protein protein induced upon wounding - Arabidopsis thaliana, PID:e257749
	3_7470001_7500000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-18-O03	At3g21270 / Dof zinc finger protein		At3g21270 ,RAFL05-18-O03 Dof-type zinc finger domain-containing protein (ADOF2) identical to Dof zinc finger protein ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical to cDNA adof2 mRNA for Dof zinc finger protein GI:3608262; contains Pfam profile PF02701: Dof domain, zinc finger
	3_23160001_23190000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-01-A10	At3g62650 / expressed protein		RAFL11-01-A10 ,At3g62650 expressed protein putative mitochondrial carrier protein At2g47490 - Arabidopsis thaliana, EMBL:AC002535
	4_14850001_14880000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-09-J06	At4g32940 / gamma-VPE (vacuolar processing enzyme)		RAFL05-09-J06 ,At4g32940 vacuolar processing enzyme gamma / gamma-VPE nearly identical to SP|Q39119 Vacuolar processing enzyme, gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) {Arabidopsis thaliana}
	5_17340001_17370000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
	1_16860001_16890000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-03-L12	At1g47128 / cysteine proteinase RD21A		RAFL05-03-L12 ,At1g47128 cysteine proteinase (RD21A) / thiol protease identical to SP|P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana}, thiol protease RD21A SP:P43297 from [Arabidopsis thaliana]
	4_6540001_6570000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-21-N06	At4g13010 / oxidoreductase, zinc-binding dehydrogenase family		At4g13010 ,RAFL05-21-N06 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430]; contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family
	3_21300001_21330000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-06-N19	At3g57540 / expressed protein		RAFL09-06-N19 ,At3g57540 remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region
	4_16830001_16860000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-10-N24	At4g38060 / expressed protein		RAFL08-10-N24 ,At4g38060 expressed protein
	5_5520001_5550000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-12-I17	At5g16840 / RRM-containing protein		At5g16840 ,RAFL06-12-I17 RNA recognition motif (RRM)-containing protein predicted proteins - Arabidopsis thaliana
	3_4860001_4890000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-09-C10	At3g14560 / expressed protein		At3g14560 ,RAFL08-09-C10 expressed protein
	4_17190001_17220000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-19-J11	At4g39140 / expressed protein		At4g39140 ,RAFL08-19-J11 expressed protein
	5_21600001_21900000				2	107	9	4545	0.025949622	0.20759697	8
		RAFL07-10-M07	At5g53970 / aminotransferase, putative		RAFL07-10-M07 ,At5g53970 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
		RAFL05-09-B02	At5g53970 / aminotransferase, putative		At5g53970 ,RAFL05-09-B02 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
	2_7500001_7800000				2	107	9	4545	0.025949622	0.18164736	7
		RAFL05-20-P13	At2g18050 / histone H1		RAFL05-20-P13 ,At2g18050 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305
		RAFL08-16-B13	At2g17390 / glucanase -related		At2g17390 ,RAFL08-16-B13 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
	5_3300001_3600000				2	107	11	4543	0.035702586	0.32132328	9
		RAFL09-07-A12	At5g10930 / CBL-interacting protein kinase 5		RAFL09-07-A12 ,At5g10930 CBL-interacting protein kinase 5 (CIPK5) identical to CBL-interacting protein kinase 5 GP|9280632|gb|AAF86504 [Arabidopsis thaliana]
		RAFL09-06-K06	At5g10730 / expressed protein		RAFL09-06-K06 ,At5g10730 expressed protein
	5_22500001_22800000				2	107	11	4543	0.035702586	0.2499181	7
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
		RAFL07-17-B18	At5g56750 / Ndr family		RAFL07-17-B18 ,At5g56750 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus}; contains Pfam profile PF03096: Ndr family
	5_15000001_18000000				6	103	101	4453	0.03824088	1.0325037	27
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
		RAFL04-17-M08	At5g43450 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL04-17-M08 ,At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967)
		RAFL06-15-G18	At5g42380 / calmodulin-related protein, putative		RAFL06-15-G18 ,At5g42380 calmodulin-related protein, putative similar to regulator of gene silencing calmodulin-related protein GI:12963415 from [Nicotiana tabacum]
	5_24900001_25200000				2	107	12	4542	0.041028306	0.49233967	12
		RAFL07-11-G07	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL07-11-G07 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
		RAFL04-10-G08	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL04-10-G08 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
	2_13590001_13620000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-09-E18	At2g32090 / glyoxalase family protein (lactoylglutathione lyase family protein)		RAFL09-09-E18 ,At2g32090 lactoylglutathione lyase family protein / glyoxalase I family protein contains glyoxalase family protein domain, Pfam:PF00903
	1_900001_930000				1	108	1	4553	0.0462095	0.092419	2
		RAFL02-09-O22	At1g03610 / expressed protein		RAFL02-09-O22 ,At1g03610 expressed protein
	2_19170001_19200000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-20-N17	At2g46830 / MYB-related transcription factor (CCA1)		RAFL05-20-N17 ,At2g46830 myb-related transcription factor (CCA1) identical to myb-related transcription factor (CCA1) GI:4090569 from [Arabidopsis thaliana]
	4_14190001_14220000				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-10-K16	At4g31420 / zinc finger protein -related		RAFL04-10-K16 ,At4g31420 zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type
	3_18030001_18060000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-15-L13	At3g48690 / expressed protein		At3g48690 ,RAFL08-15-L13 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
	3_18930001_18960000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-14-G09	At3g51000 / epoxide hydrolase, putative		At3g51000 ,RAFL09-14-G09 epoxide hydrolase, putative similar to epoxide hydrolase [Glycine max] GI:2764806; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	5_3390001_3420000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-06-K06	At5g10730 / expressed protein		RAFL09-06-K06 ,At5g10730 expressed protein
	1_25710001_25740000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-11-M15	At1g69360 / expressed protein		RAFL08-11-M15 ,At1g69360 expressed protein
	1_5490001_5520000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-C07	At1g16030 / heat shock protein hsp70b		RAFL05-14-C07 ,At1g16030 heat shock protein 70, putative / HSP70, putative similar to heat shock protein hsp70 GI:1771478 from [Pisum sativum]
	5_8940001_8970000				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-10-J20	At5g25770 / expressed protein		RAFL11-10-J20 ,At5g25770 expressed protein
	3_6240001_6270000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-F21	At3g18280 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-04-F21 ,At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to TED4 [Zinnia elegans] GI:493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	2_7770001_7800000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-20-P13	At2g18050 / histone H1		RAFL05-20-P13 ,At2g18050 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305
	3_17700001_17730000				1	108	1	4553	0.0462095	0.092419	2
		RAFL03-05-E06	At3g48000 / mitochondrial aldehyde dehydrogenase, putative (ALDH)		RAFL03-05-E06 ,At3g48000 aldehyde dehydrogenase (ALDH2) identical to aldehyde dehydrogenase [Arabidopsis thaliana] GI:8574427; similar to mitochondrial aldehyde dehydrogenase [Arabidopsis thaliana] gi|19850249|gb|AAL99612; identical to cDNA aldehyde dehydrogenase AtALDH2a GI:20530140
	2_7500001_7530000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-16-B13	At2g17390 / glucanase -related		At2g17390 ,RAFL08-16-B13 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
	4_16080001_16110000				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-13-G16	At4g36210 / expressed protein		RAFL11-13-G16 ,At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726)
	4_5220001_5250000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-21-G15	At4g10040 / cytochrome c		RAFL05-21-G15 ,At4g10040 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
	2_13980001_14010000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-10-H19	At2g33140 / tRNA-Met		At2g33140 ,RAFL09-10-H19 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL09-10-H19
	3_2880001_2910000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-03-P08	At3g09390 / metallothionein-related protein		At3g09390 ,RAFL05-03-P08 metallothionein protein, putative (MT2A) identical to Swiss-Prot:P25860 metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) [Arabidopsis thaliana]
	1_27000001_27030000				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-07-D13	At1g72680 / cinnamyl-alcohol dehydrogenase (CAD), putative		At1g72680 ,RAFL11-07-D13 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl-alcohol dehydrogenase GB:AAC35846 [Medicago sativa], SP|Q08350 [Picea abies]
	1_25740001_25770000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-13-J20	At1g69410 / Eukaryotic initiation factor 5A -related		RAFL09-13-J20 ,At1g69410 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
	1_90001_120000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-14-L09	At1g01240 / expressed protein		At1g01240 ,RAFL08-14-L09 expressed protein
	5_1500001_1530000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-08-M01	At5g05110 / cysteine proteinase inhibitor-related protein		RAFL05-08-M01 ,At5g05110 cysteine protease inhibitor, putative / cystatin, putative similar to cysteine proteinase inhibitor [Glycine max] GI:1944342; contains Pfam profile PF00031: Cystatin domain
	1_27330001_27360000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-M13	At1g73680 / feebly-related protein		RAFL05-13-M13 ,At1g73680 pathogen-responsive alpha-dioxygenase, putative similar to pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase
	4_10620001_10650000				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-16-C12	At4g21980 / symbiosis-related like protein		At4g21980 ,RAFL04-16-C12 autophagy 8a (APG8a) identical to autophagy 8a [Arabidopsis thaliana] GI:19912151; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3
	5_26160001_26190000				1	108	1	4553	0.0462095	0.092419	2
		RAFL02-09-F24	At5g66170 / senescence-associated protein		RAFL02-09-F24 ,At5g66170 senescence-associated family protein contains similarity to ketoconazole resistant protein GI:928938 and senescence-associated protein GI:1046268 from [Arabidopsis thaliana]
	5_4770001_4800000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-B21	At5g14780 / formate dehydrogenase (FDH)		RAFL05-04-B21 ,At5g14780 formate dehydrogenase (FDH) identical to GI:7677266
	2_12300001_12330000				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-17-D16	At2g28840 / RING zinc finger ankyrin protein -related		At2g28840 ,RAFL04-17-D16 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
	4_17160001_17190000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-21-M07	At4g39090 / cysteine proteinase RD19A		RAFL05-21-M07 ,At4g39090 cysteine proteinase RD19a (RD19A) / thiol protease identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from [Arabidopsis thaliana]
	5_22530001_22560000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-13-I12	At5g56380 / expressed protein		At5g56380 ,RAFL08-13-I12 F-box family protein similar to unknown protein (emb|CAB62440.1); contains Pfam profile PF00646: F-box domain
	3_19230001_19260000				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-13-H12	At3g51840 / acyl-coA dehydrogenase		At3g51840 ,RAFL06-13-H12 short-chain acyl-CoA oxidase identical to Short-chain acyl CoA oxidase [Arabidopsis thaliana] GI:5478795; contains InterPro entry IPR006089: Acyl-CoA dehydrogenase
	1_9480001_9510000				1	108	1	4553	0.0462095	0.092419	2
		RAFL11-05-A02	At1g27300 / expressed protein		At1g27300 ,RAFL11-05-A02 expressed protein
	3_1050001_1080000				1	108	1	4553	0.0462095	0.092419	2
		RAFL07-08-G02	At3g04080 / apyrase (Atapy1)		At3g04080 ,RAFL07-08-G02 apyrase (APY1) identical to apyrase (Atapy1) GI:6002631 from [Arabidopsis thaliana]
	4_1380001_1410000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-16-M09	At4g03200 / expressed protein		RAFL08-16-M09 ,At4g03200 expressed protein contains Pfam PF03190: Protein of unknown function, DUF255
Cluster:7-2					A	B	C	D	P	P'	N
	1_3750001_3780000				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL07-18-O08	At1g11210 / expressed protein		At1g11210 ,RAFL07-18-O08 expressed protein contains similarity to cotton fiber expressed protein 1 [Gossypium hirsutum] gi|3264828|gb|AAC33276
		RAFL07-09-F22	At1g11260 / glucose transporter		At1g11260 ,RAFL07-09-F22 glucose transporter (STP1) nearly identical to glucose transporter GB:P23586 SP|P23586 from [Arabidopsis thaliana]
	2_19020001_19050000				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL09-12-N16	At2g46510 / bHLH protein family		RAFL09-12-N16 ,At2g46510 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain
		RAFL05-09-M21	At2g46470 / OXA1 protein (OXA1p), putative		RAFL05-09-M21 ,At2g46470 OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI:10176922
	5_19290001_19320000				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL09-06-H02	At5g48380 / leucine rich repeat protein family		At5g48380 ,RAFL09-06-H02 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
		RAFL09-12-F09	At5g48380 / leucine rich repeat protein family		RAFL09-12-F09 ,At5g48380 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
	5_23760001_23790000				2	62	0	4599	1.8547391E-4	1.8547391E-4	1
		RAFL08-08-B13	At5g59730 / exocyst subunit EXO70 family		RAFL08-08-B13 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
		RAFL09-18-E12	At5g59730 / exocyst subunit EXO70 family		RAFL09-18-E12 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
	1_2850001_2880000				2	62	1	4598	5.5148744E-4	0.0011029749	2
		RAFL09-16-N17	At1g08930 / ERD6 protein		RAFL09-16-N17 ,At1g08930 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
		RAFL05-18-E19	At1g08930 / ERD6 protein		At1g08930 ,RAFL05-18-E19 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
	2_17190001_17220000				2	62	1	4598	5.5148744E-4	0.0011029749	2
		RAFL06-10-F19	At2g41430 / ERD15 protein		At2g41430 ,RAFL06-10-F19 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
		RAFL02-08-C02	At2g41430 / ERD15 protein		At2g41430 ,RAFL02-08-C02 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
	1_10710001_10740000				2	62	2	4597	0.0010932032	0.0032796096	3
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
	4_16980001_17010000				2	62	3	4596	0.001805879	0.007223516	4
		RAFL08-17-I12	At4g38550 / Phospholipase like protein		RAFL08-17-I12 ,At4g38550 expressed protein
		RAFL09-15-P17	At4g38550 / Phospholipase like protein		At4g38550 ,RAFL09-15-P17 expressed protein
	1_9000001_12000000				6	58	110	4489	0.004819321	0.14457963	30
		RAFL02-08-M10	At1g32640 / bHLH protein (RAP-1)		At1g32640 ,RAFL02-08-M10 basic helix-loop-helix (bHLH) protein (RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368 from [Arabidopsis thaliana]
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
		RAFL05-14-E08	At1g31130 / expressed protein		RAFL05-14-E08 ,At1g31130 expressed protein
	4_16800001_17100000				3	61	23	4576	0.0051187878	0.06654424	13
		RAFL08-17-I12	At4g38550 / Phospholipase like protein		RAFL08-17-I12 ,At4g38550 expressed protein
		RAFL04-09-M02	At4g38400 / expansin protein family (EXPL2)		At4g38400 ,RAFL04-09-M02 expansin family protein (EXPL2) contains Pfam profile: PF01357 pollen allergen; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL09-15-P17	At4g38550 / Phospholipase like protein		At4g38550 ,RAFL09-15-P17 expressed protein
	1_10500001_10800000				2	62	7	4592	0.00627458	0.04392206	7
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
	1_3600001_3900000				2	62	8	4591	0.0077741425	0.06219314	8
		RAFL07-18-O08	At1g11210 / expressed protein		At1g11210 ,RAFL07-18-O08 expressed protein contains similarity to cotton fiber expressed protein 1 [Gossypium hirsutum] gi|3264828|gb|AAC33276
		RAFL07-09-F22	At1g11260 / glucose transporter		At1g11260 ,RAFL07-09-F22 glucose transporter (STP1) nearly identical to glucose transporter GB:P23586 SP|P23586 from [Arabidopsis thaliana]
	1_9900001_10200000				2	62	8	4591	0.0077741425	0.06219314	8
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
	5_19200001_19500000				2	62	9	4590	0.009418122	0.06592685	7
		RAFL09-06-H02	At5g48380 / leucine rich repeat protein family		At5g48380 ,RAFL09-06-H02 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
		RAFL09-12-F09	At5g48380 / leucine rich repeat protein family		RAFL09-12-F09 ,At5g48380 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
	2_17100001_17400000				2	62	9	4590	0.009418122	0.07534497	8
		RAFL06-10-F19	At2g41430 / ERD15 protein		At2g41430 ,RAFL06-10-F19 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
		RAFL02-08-C02	At2g41430 / ERD15 protein		At2g41430 ,RAFL02-08-C02 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana]
	5_23700001_24000000				2	62	11	4588	0.013122933	0.09186053	7
		RAFL08-08-B13	At5g59730 / exocyst subunit EXO70 family		RAFL08-08-B13 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
		RAFL09-18-E12	At5g59730 / exocyst subunit EXO70 family		RAFL09-18-E12 ,At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 contains Pfam domain PF03081: Exo70 exocyst complex subunit;
	1_11100001_11130000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-14-E08	At1g31130 / expressed protein		RAFL05-14-E08 ,At1g31130 expressed protein
	2_17910001_17940000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL06-08-B14	At2g43290 / calmodulin-like protein (MSS3)		RAFL06-08-B14 ,At2g43290 calmodulin-like protein (MSS3) identical to calmodulin-like MSS3 from GI:9965747 [Arabidopsis thaliana]
	2_5670001_5700000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL07-13-F17	At2g13790 / leucine-rich repeat protein kinase family		At2g13790 ,RAFL07-13-F17 leucine-rich repeat family protein / protein kinase family protein
	4_14430001_14460000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-03-O13	At4g32020 / expressed protein		At4g32020 ,RAFL05-03-O13 expressed protein NuLL
	3_20760001_20790000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-18-O11	At3g55980 / expressed protein		At3g55980 ,RAFL08-18-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
	3_16200001_16230000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-08-E01	At3g44630 / disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative		At3g44630 ,RAFL05-08-E01 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB
	1_24000001_24030000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-01-H10	At1g65560 / allyl alcohol dehydrogenase, putative		At1g65560 ,RAFL05-01-H10 allyl alcohol dehydrogenase, putative similar to allyl alcohol dehydrogenase from Nicotiana tabacum [gi:6692816]; similar to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430], Arabidopsis thaliana
	2_16710001_16740000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL11-12-C17	At2g40140 / CCCH-type zinc finger protein -related		At2g40140 ,RAFL11-12-C17 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
	1_11790001_11820000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL02-08-M10	At1g32640 / bHLH protein (RAP-1)		At1g32640 ,RAFL02-08-M10 basic helix-loop-helix (bHLH) protein (RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368 from [Arabidopsis thaliana]
	4_13500001_13530000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-12-O13	At4g29670 / thioredoxin family		RAFL05-12-O13 ,At4g29670 thioredoxin family protein contains Pfam profile PF00085: Thioredoxin
	2_2340001_2370000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL06-16-J10	At2g06050 / 12-oxophytodienoate reductase (OPR3)(DDE1)		RAFL06-16-J10 ,At2g06050 12-oxophytodienoate reductase (OPR3) / delayed dehiscence1 (DDE1) nearly identical to DELAYED DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314]; contains Pfam profile PF00724:oxidoreductase, FAD/FMN-binding; identical to cDNA OPDA-reductase homolog GI:5059114
	3_15900001_15930000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL04-17-L19	At3g44190 / pyridine nucleotide-disulphide oxidoreductase family		At3g44190 ,RAFL04-17-L19 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum [GI:472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain
	1_26910001_26940000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-09-J23	At1g72450 / expressed protein		At1g72450 ,RAFL05-09-J23 expressed protein
	1_12720001_12750000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-19-E24	At1g34780 / expressed protein		RAFL08-19-E24 ,At1g34780 protein disulfide isomerase-related contains weak similarity to Pfam:P08003 protein disulfide isomerase A4 precursor (Protein ERp-72, ERp72) [Mus musculus]
	1_29010001_29040000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL05-05-M05	At1g78080 / AP2 domain transcription factor RAP2.4		RAFL05-05-M05 ,At1g78080 AP2 domain-containing transcription factor RAP2.4 identical to AP2 domain containing protein GI:2281633 from [Arabidopsis thaliana]
	5_8370001_8400000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL04-15-M12	At5g24590 / No apical meristem (NAM) protein family		At5g24590 ,RAFL04-15-M12 turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 (GI:6456751) {Arabidopsis thaliana}; identical to cDNA TIP mRNA, GI:9408600
	1_3240001_3270000				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-16-N03	At1g09970 / leucine-rich repeat transmembrane protein kinase, putative		RAFL08-16-N03 ,At1g09970 leucine-rich repeat transmembrane protein kinase, putative Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene isoform contains a TG acceptor site at intron.
	2_18900001_19200000				2	62	12	4587	0.015175772	0.16693349	11
		RAFL09-12-N16	At2g46510 / bHLH protein family		RAFL09-12-N16 ,At2g46510 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain
		RAFL05-09-M21	At2g46470 / OXA1 protein (OXA1p), putative		RAFL05-09-M21 ,At2g46470 OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI:10176922
	1_2700001_3000000				2	62	12	4587	0.015175772	0.16693349	11
		RAFL09-16-N17	At1g08930 / ERD6 protein		RAFL09-16-N17 ,At1g08930 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
		RAFL05-18-E19	At1g08930 / ERD6 protein		At1g08930 ,RAFL05-18-E19 early-responsive to dehydration stress protein (ERD6) / sugar transporter family protein identical to ERD6 protein {Arabidopsis thaliana} GI:3123712; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter
	3_15000001_18000000				4	60	72	4527	0.019808238	0.5744389	29
		RAFL04-17-K15	At3g45640 / mitogen-activated protein kinase (MAPK), putative (MPK3)		At3g45640 ,RAFL04-17-K15 mitogen-activated protein kinase, putative / MAPK, putative (MPK3) identical to mitogen-activated protein kinase homolog (AtMPK3)[Arabidopsis thaliana] SWISS-PROT:Q39023; PMID:12119167
		RAFL05-08-E01	At3g44630 / disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative		At3g44630 ,RAFL05-08-E01 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB
		RAFL04-17-L19	At3g44190 / pyridine nucleotide-disulphide oxidoreductase family		At3g44190 ,RAFL04-17-L19 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum [GI:472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain
		RAFL09-16-L17	At3g47960 / peptide transporter -related		At3g47960 ,RAFL09-16-L17 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	1_9960001_9990000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
	2_11220001_11250000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-08-I12	At2g26530 / AR781, similar to yeast pheromone receptor		RAFL07-08-I12 ,At2g26530 expressed protein
	1_7950001_7980000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-13-C22	At1g22510 / C3HC4-type zinc finger protein family		At1g22510 ,RAFL04-13-C22 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
	1_25920001_25950000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL06-15-N08	At1g69840 / expressed protein		At1g69840 ,RAFL06-15-N08 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI:7716466; contains Pfam profile PF01145: SPFH domain / Band 7 family
	1_6240001_6270000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-18-L07	At1g18210 / calcium-binding protein, putative		RAFL05-18-L07 ,At1g18210 calcium-binding protein, putative similar to SP|Q9M7R0 Calcium-binding allergen Ole e 8 (PCA18/PCA23) {Olea europaea}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
	3_17700001_17730000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-16-L17	At3g47960 / peptide transporter -related		At3g47960 ,RAFL09-16-L17 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	2_11730001_11760000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-17-A13	At2g27690 / cytochrome P450, putative		RAFL05-17-A13 ,At2g27690 cytochrome P450, putative similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13877668
	2_13500001_13530000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-10-A09	At2g31880 / leucine-rich repeat transmembrane protein kinase, putative		RAFL09-10-A09 ,At2g31880 leucine-rich repeat transmembrane protein kinase, putative
	1_26280001_26310000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL07-15-M06	At1g70700 / expressed protein		At1g70700 ,RAFL07-15-M06 expressed protein
	1_9930001_9960000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
	2_17070001_17100000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL06-09-P21	At2g41110 / calmodulin		At2g41110 ,RAFL06-09-P21 calmodulin-2/3/5 (CAM2) (CAL1) almost identical to Calmodulin-2/3/5 SP:P25069 from [Arabidopsis thaliana]
	4_16920001_16950000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-09-M02	At4g38400 / expansin protein family (EXPL2)		At4g38400 ,RAFL04-09-M02 expansin family protein (EXPL2) contains Pfam profile: PF01357 pollen allergen; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
	3_660001_690000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL09-16-P14	At3g03050 / cellulose synthase family		RAFL09-16-P14 ,At3g03050 cellulose synthase family protein (CslD3) similar to cellulose synthase catalytic subunit gi:2827143 from [Arabidopsis thaliana], cellulose synthase-7 (gi:9622886) from Zea mays; contains Pfam profile PF03552: Cellulose synthase
	3_16740001_16770000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL04-17-K15	At3g45640 / mitogen-activated protein kinase (MAPK), putative (MPK3)		At3g45640 ,RAFL04-17-K15 mitogen-activated protein kinase, putative / MAPK, putative (MPK3) identical to mitogen-activated protein kinase homolog (AtMPK3)[Arabidopsis thaliana] SWISS-PROT:Q39023; PMID:12119167
	2_19260001_19290000				1	63	1	4598	0.027264666	0.05452933	2
		RAFL05-19-I07	At2g47060 / serine/threonine protein kinase, putative		RAFL05-19-I07 ,At2g47060 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
	5_21450001_21480000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL04-20-H14	At5g53570 / GTPase activator protein of Rab-related small GTPases-like protein		RAFL04-20-H14 ,At5g53570 RabGAP/TBC domain-containing protein similar to GTPase activating protein [Yarrowia lipolytica] GI:2370595; contains Pfam profile PF00566: TBC domain
	5_25590001_25620000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-09-M07	At5g64740 / cellulose synthase, catalytic subunit, putative		RAFL05-09-M07 ,At5g64740 cellulose synthase, catalytic subunit, putative similar to gi:2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis thaliana
	3_18360001_18390000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL07-09-D08	At3g49530 / No apical meristem (NAM) protein family		At3g49530 ,RAFL07-09-D08 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 - Arabidopsis thaliana, EMBL:AF201456
	5_26520001_26550000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-15-B18	At5g67250 / SKP1 interacting partner 2 (SKIP2)		RAFL05-15-B18 ,At5g67250 SKP1 interacting partner 2 (SKIP2) identical to SKP1 interacting partner 2 GI:10716949 from [Arabidopsis thaliana]
	1_20280001_20310000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL02-09-J03	At1g55450 / expressed protein		At1g55450 ,RAFL02-09-J03 embryo-abundant protein-related similar to embryo-abundant protein GI:1350531 from [Picea glauca]
	1_60001_90000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL04-16-A16	At1g01140 / CBL-interacting protein kinase 9		RAFL04-16-A16 ,At1g01140 CBL-interacting protein kinase 9 (CIPK9) identical to CBL-interacting protein kinase 9 [Arabidopsis thaliana] gi|13249117|gb|AAK16684; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 9 (CIPK9) GI:13249116
	4_11040001_11070000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-18-D20	At4g23060 / expressed protein		At4g23060 ,RAFL05-18-D20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
	2_2100001_2400000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL06-16-J10	At2g06050 / 12-oxophytodienoate reductase (OPR3)(DDE1)		RAFL06-16-J10 ,At2g06050 12-oxophytodienoate reductase (OPR3) / delayed dehiscence1 (DDE1) nearly identical to DELAYED DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314]; contains Pfam profile PF00724:oxidoreductase, FAD/FMN-binding; identical to cDNA OPDA-reductase homolog GI:5059114
	1_12600001_12900000				1	63	2	4597	0.040621255	0.12186376	3
		RAFL08-19-E24	At1g34780 / expressed protein		RAFL08-19-E24 ,At1g34780 protein disulfide isomerase-related contains weak similarity to Pfam:P08003 protein disulfide isomerase A4 precursor (Protein ERp-72, ERp72) [Mus musculus]
Cluster:9-1					A	B	C	D	P	P'	N
	5_20460001_20490000				2	94	0	4567	4.1952432E-4	4.1952432E-4	1
		RAFL09-15-D15	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL09-15-D15 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
		RAFL05-05-I08	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL05-05-I08 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
	2_6870001_6900000				2	94	0	4567	4.1952432E-4	4.1952432E-4	1
		RAFL05-19-E15	At2g15960 / expressed protein		RAFL05-19-E15 ,At2g15960 expressed protein
		RAFL06-16-B22	At2g15970 / cold acclimation protein WCOR413 (Triticum aestivum) -related		RAFL06-16-B22 ,At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI:10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI:11127595
	1_27180001_27210000				2	94	1	4566	0.0012416516	0.0024833032	2
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
	1_23670001_23700000				2	94	1	4566	0.0012416516	0.0024833032	2
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
	1_21000001_24000000				7	89	80	4487	0.0019192069	0.04989938	26
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
		RAFL09-10-F14	At1g63010 / expressed protein		At1g63010 ,RAFL09-10-F14 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
	5_18990001_19020000				2	94	2	4565	0.002449967	0.007349901	3
		RAFL09-09-E01	At5g47560 / sodium/dicarboxylate cotransporter, putative		RAFL09-09-E01 ,At5g47560 sodium/dicarboxylate cotransporter, putative similar to SWISS-PROT:Q13183 renal sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
		RAFL11-13-F11	At5g47550 / expressed protein		RAFL11-13-F11 ,At5g47550 cysteine protease inhibitor, putative / cystatin, putative similar to SP|P09229 Cysteine proteinase inhibitor-I (Oryzacystatin-I) {Oryza sativa}; contains Pfam profile PF00031: Cystatin domain
	1_2160001_2190000				2	94	2	4565	0.002449967	0.007349901	3
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
	1_23400001_23700000				3	93	11	4556	0.0026107915	0.01827554	7
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
	1_27000001_27300000				3	93	11	4556	0.0026107915	0.026107915	10
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
	1_2010001_2040000				2	94	4	4563	0.005961956	0.023847824	4
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
	1_1_3000000				9	87	161	4406	0.00782445	0.2503824	32
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
	1_1500001_1800000				2	94	5	4562	0.008235214	0.049411286	6
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	2_6600001_6900000				2	94	7	4560	0.013743652	0.06871826	5
		RAFL05-19-E15	At2g15960 / expressed protein		RAFL05-19-E15 ,At2g15960 expressed protein
		RAFL06-16-B22	At2g15970 / cold acclimation protein WCOR413 (Triticum aestivum) -related		RAFL06-16-B22 ,At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI:10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI:11127595
	1_2100001_2400000				3	93	22	4545	0.014007794	0.18210132	13
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
	1_23430001_23460000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
	4_8790001_8820000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-09-G07	At4g17650 / expressed protein		At4g17650 ,RAFL05-09-G07 aromatic-rich family protein contains Pfam PF03654: Aromatic-Rich Protein Family
	3_16380001_16410000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-19-O23	At3g44880 / Rieske (2Fe-2S) domain-containing protein		RAFL05-19-O23 ,At3g44880 Rieske [2Fe-2S] domain-containing protein similar to lethal leaf-spot 1 from Zea mays [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S] domain
	4_2550001_2580000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-02-M17	At4g05020 / NADH dehydrogenase - related		At4g05020 ,RAFL05-02-M17 NADH dehydrogenase-related similar to alternative NADH-dehydrogenase [Yarrowia lipolytica] GI:3718005, 64 kDa mitochondrial NADH dehydrogenase [Neurospora crassa] GI:4753821; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase
	1_28620001_28650000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL07-16-P10	At1g77120 / alcohol dehydrogenase (ADH)		RAFL07-16-P10 ,At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana)
	2_15360001_15390000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-18-H16	At2g36780 / UDP-glycosyltransferase family		At2g36780 ,RAFL05-18-H16 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	2_17730001_17760000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-15-D21	At2g42790 / citrate synthase -related		RAFL05-15-D21 ,At2g42790 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase
	1_23280001_23310000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
	4_10380001_10410000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-07-E08	At4g21440 / myb family protein		At4g21440 ,RAFL09-07-E08 myb family transcription factor (MYB102) contains Pfam profile: PF00249 myb-like DNA-binding domain
	4_9000001_9030000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL06-12-M01	At4g18170 / WRKY family transcription factor		At4g18170 ,RAFL06-12-M01 WRKY family transcription factor similar to DNA-binding protein 2 GI:4322940 from [Nicotiana tabacum]; contains Pfam profile: PF03106 WRKY DNA -binding domain
	1_3810001_3840000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-08-I15	At1g11360 / expressed protein		RAFL08-08-I15 ,At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) [Lycopersicon esculentum]
	2_18090001_18120000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL07-12-I23	At2g43820 / glycosyltransferase family		At2g43820 ,RAFL07-12-I23 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	2_19110001_19140000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-20-M16	At2g46680 / homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7)		At2g46680 ,RAFL05-20-M16 homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 identical to homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein ATHB-7) (SP:P46897) [Arabidopsis thaliana];
	3_18180001_18210000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-20-P19	At3g49110 / peroxidase		RAFL04-20-P19 ,At3g49110 peroxidase 33 (PER33) (P33) (PRXCA) / neutral peroxidase C (PERC) identical to SP|P24101 Peroxidase 33 precursor (EC 1.11.1.7) (Atperox P33) (ATPCa) (Neutral peroxidase C) (PERC) {Arabidopsis thaliana}
	4_5100001_5130000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL06-16-C13	At4g09760 / choline kinase GmCK2p -related protein		At4g09760 ,RAFL06-16-C13 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375
	1_22470001_22500000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
	1_1680001_1710000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	1_25290001_25320000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-10-A12	At1g68440 / expressed protein		RAFL09-10-A12 ,At1g68440 expressed protein
	4_8370001_8400000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-09-K15	At4g16760 / acyl-CoA oxidase like protein		RAFL09-09-K15 ,At4g16760 acyl-CoA oxidase (ACX1) identical to acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
	1_10260001_10290000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-18-O20	At1g29395 / expressed protein		At1g29395 ,RAFL05-18-O20 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505
	3_11370001_11400000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-05-A17	At3g29575 / expressed protein		At3g29575 ,RAFL05-05-A17 expressed protein
	1_21240001_21270000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
	2_18000001_18030000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL04-12-G16	At2g43570 / glycosyl hydrolase family 19 (chitinase)		At2g43570 ,RAFL04-12-G16 chitinase, putative similar to chitinase class IV GI:722272 from [Brassica napus]
	1_7890001_7920000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-02-P11	At1g22370 / glycosyltransferase family		At1g22370 ,RAFL05-02-P11 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family
	5_7020001_7050000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-16-I09	At5g20830 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase/SUS1)		At5g20830 ,RAFL05-16-I09 sucrose synthase / sucrose-UDP glucosyltransferase (SUS1) identical to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana}
	5_8100001_8130000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-12-E12	At5g24080 / protein kinase family		At5g24080 ,RAFL08-12-E12 protein kinase family protein contains protein kinase domain, Pfam:PF00069
	3_18210001_18240000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-07-G15	At3g49120 / peroxidase, putative		At3g49120 ,RAFL09-07-G15 peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677
	1_570001_600000				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
	5_20400001_20700000				2	94	11	4556	0.028228948	0.22583158	8
		RAFL09-15-D15	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL09-15-D15 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
		RAFL05-05-I08	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL05-05-I08 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
	Chromosome:1				32	64	1087	3480	0.039249726	1.2952409	33
		RAFL11-12-C18	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL11-12-C18 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL11-04-I22	At1g73260 / trypsin inhibitor -related		At1g73260 ,RAFL11-04-I22 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL11-09-O05	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		At1g06570 ,RAFL11-09-O05 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
		RAFL05-18-O20	At1g29395 / expressed protein		At1g29395 ,RAFL05-18-O20 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL06-11-B11	At1g73260 / trypsin inhibitor -related		RAFL06-11-B11 ,At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor
		RAFL08-08-I15	At1g11360 / expressed protein		RAFL08-08-I15 ,At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) [Lycopersicon esculentum]
		RAFL09-16-I11	At1g69490 / No apical meristem (NAM) protein family		At1g69490 ,RAFL09-16-I11 no apical meristem (NAM) family protein similar to N-term half of NAC domain protein NAM [Arabidopsis thaliana] GI:4325282
		RAFL08-19-M03	At1g07040 / expressed protein		At1g07040 ,RAFL08-19-M03 expressed protein
		RAFL08-10-M13	At1g17020 / oxidoreductase, 2OG-Fe(II) oxygenase family		At1g17020 ,RAFL08-10-M13 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI:311658], leucoanthocyanidin dioxygenase [Malus domestica][SP|P51091]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
		RAFL07-16-P10	At1g77120 / alcohol dehydrogenase (ADH)		RAFL07-16-P10 ,At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana)
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
		RAFL05-11-H09	At1g05680 / glycosyltransferase family		At1g05680 ,RAFL05-11-H09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL04-17-I03	At1g07040 / expressed protein		At1g07040 ,RAFL04-17-I03 expressed protein
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL05-09-P03	At1g74020 / strictosidine synthase family		At1g74020 ,RAFL05-09-P03 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]; contains strictosidine synthase domain PF03088
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
		RAFL05-02-P11	At1g22370 / glycosyltransferase family		At1g22370 ,RAFL05-02-P11 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family
		RAFL08-09-J19	At1g02660 / lipase (class 3) family		RAFL08-09-J19 ,At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL07-13-F20	At1g78850 / curculin-like (mannose-binding) lectin family		At1g78850 ,RAFL07-13-F20 curculin-like (mannose-binding) lectin family protein low similarity to ser/thr protein kinase from Zea mays [GI:2598067]; contains Pfam lectin (probable mannose binding) domain PF01453
		RAFL05-05-E24	At1g13990 / expressed protein		At1g13990 ,RAFL05-05-E24 expressed protein
		RAFL05-10-D21	At1g54120 / expressed protein		At1g54120 ,RAFL05-10-D21 expressed protein
		RAFL09-10-A12	At1g68440 / expressed protein		RAFL09-10-A12 ,At1g68440 expressed protein
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
		RAFL09-10-F14	At1g63010 / expressed protein		At1g63010 ,RAFL09-10-F14 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
		RAFL05-07-A03	At1g17870 / expressed protein		At1g17870 ,RAFL05-07-A03 expressed protein contains 6 transmembrane domains; similar to predicted metalloproteases
		RAFL09-06-B11	At1g07720 / beta-ketoacyl-CoA synthase family		RAFL09-06-B11 ,At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) In press)
	2_1140001_1170000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-01-D08	At2g03760 / steroid sulfotransferase, putative		RAFL05-01-D08 ,At2g03760 steroid sulfotransferase, putative strong similarity to steroid sulfotransferases from [Brassica napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam profile PF00685: Sulfotransferase domain
	4_15900001_15930000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL02-09-H01	At4g35770 / senescence-associated protein sen1		At4g35770 ,RAFL02-09-H01 senescence-associated protein (SEN1) identical to senescence-associated protein GI:1046270 from [Arabidopsis thaliana]
	1_4770001_4800000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-E24	At1g13990 / expressed protein		At1g13990 ,RAFL05-05-E24 expressed protein
	5_17070001_17100000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-12-P15	At5g43260 / expressed protein		At5g43260 ,RAFL04-12-P15 chaperone protein dnaJ-related similar to Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
	4_15990001_16020000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-16-J23	At4g36040 / DnaJ protein family		RAFL09-16-J23 ,At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) identical to dnaJ heat shock protein J11 [Arabidopsis thaliana] GI:9843641; contains Pfam profile PF00226 DnaJ domain
	1_27270001_27300000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-10-D11	At1g73480 / hydrolase, alpha/beta fold family		RAFL05-10-D11 ,At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	5_8610001_8640000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-16-K11	At5g25110 / CBL-interacting protein kinase 25		RAFL05-16-K11 ,At5g25110 CBL-interacting protein kinase 25 (CIPK25) identical to CBL-interacting protein kinase 25 [Arabidopsis thaliana] gi|17646697|gb|AAL41008
	2_9180001_9210000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-18-C17	At2g21620 / auxin-regulated protein		RAFL05-18-C17 ,At2g21620 universal stress protein (USP) family protein / responsive to dessication protein (RD2) strong similarity to RD2 protein [Arabidopsis thaliana] GI:15320408; contains Pfam profile PF00582: universal stress protein family; identical to cDNA RD2 GI:15320407
	5_210001_240000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-11-F15	At5g01600 / ferritin 1 precursor		RAFL06-11-F15 ,At5g01600 ferritin 1 (FER1) identical to ferritin [Arabidopsis thaliana] GI:1246401, GI:8163920
	1_6150001_6180000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-07-A03	At1g17870 / expressed protein		At1g17870 ,RAFL05-07-A03 expressed protein contains 6 transmembrane domains; similar to predicted metalloproteases
	3_21090001_21120000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-F20	At3g57020 / strictosidine synthase-related		RAFL05-05-F20 ,At3g57020 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
	1_1530001_1560000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
	1_5820001_5850000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL08-10-M13	At1g17020 / oxidoreductase, 2OG-Fe(II) oxygenase family		At1g17020 ,RAFL08-10-M13 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI:311658], leucoanthocyanidin dioxygenase [Malus domestica][SP|P51091]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
	5_6810001_6840000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-13-E17	At5g20230 / plastocyanin-like domain containing protein		RAFL04-13-E17 ,At5g20230 plastocyanin-like domain-containing protein
	1_25770001_25800000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-16-I11	At1g69490 / No apical meristem (NAM) protein family		At1g69490 ,RAFL09-16-I11 no apical meristem (NAM) family protein similar to N-term half of NAC domain protein NAM [Arabidopsis thaliana] GI:4325282
	5_26340001_26370000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-11-J12	At5g66760 / succinate dehydrogenase (ubiquinone), putative		RAFL09-11-J12 ,At5g66760 succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II identical to SP|O82663 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II) {Arabidopsis thaliana}
	1_19560001_19590000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
	3_3990001_4020000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-06-L09	At3g12580 / heat shock protein hsp70		At3g12580 ,RAFL09-06-L09 heat shock protein 70, putative / HSP70, putative strong similarity to heat shock protein GI:425194 [Spinacia oleracea]
	4_16530001_16560000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL04-16-P21	At4g37370 / cytochrome P450, putative		At4g37370 ,RAFL04-16-P21 cytochrome P450, putative similar to Cytochrome P450 91A1 (SP:Q9FG65 )[Arabidopsis thaliana]; cytochrome P450, Glycyrrhiza echinata, AB001379
	2_1500001_1530000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-11-E20	At2g04350 / long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase) family		At2g04350 ,RAFL05-11-E20 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) similar to LACS 4 [SP|O35547] from Rattus norvegicus, LACS 4 [SP|O60488] from Homo sapiens; contains Pfam HMM hit: AMP-binding enzymes PF00501
	1_780001_810000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-09-D10	At1g03220 / expressed protein		At1g03220 ,RAFL05-09-D10 extracellular dermal glycoprotein, putative / EDGP, putative similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741
	2_16050001_16080000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-07-J20	At2g38530 / nonspecific lipid transfer protein 2 (LTP 2)		RAFL06-07-J20 ,At2g38530 nonspecific lipid transfer protein 2 (LTP2) identical to nonspecific lipid-transfer protein 2 from Arabidopsis thaliana [SP|Q9S7I3]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	2_12810001_12840000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-16-G04	At2g30140 / glycosyltransferase family		RAFL05-16-G04 ,At2g30140 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	3_17190001_17220000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL08-10-K08	At3g46660 / glucosyltransferase-related protein		At3g46660 ,RAFL08-10-K08 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	4_13830001_13860000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-12-N20	At4g30470 / cinnamoyl-CoA reductase-related		RAFL05-12-N20 ,At4g30470 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Saccharum officinarum [GI:3341511]
	2_16170001_16200000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-10-A08	At2g38820 / expressed protein		RAFL06-10-A08 ,At2g38820 expressed protein contains Pfam profile PF04720: Protein of unknown function (DUF506)
	5_5970001_6000000				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-N18	At5g18130 / expressed protein		At5g18130 ,RAFL05-05-N18 expressed protein similar to unknown protein (gb|AAF00631.1)
	4_15900001_16200000				2	94	14	4553	0.04173314	0.41733137	10
		RAFL02-09-H01	At4g35770 / senescence-associated protein sen1		At4g35770 ,RAFL02-09-H01 senescence-associated protein (SEN1) identical to senescence-associated protein GI:1046270 from [Arabidopsis thaliana]
		RAFL09-16-J23	At4g36040 / DnaJ protein family		RAFL09-16-J23 ,At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) identical to dnaJ heat shock protein J11 [Arabidopsis thaliana] GI:9843641; contains Pfam profile PF00226 DnaJ domain
	1_19500001_19800000				2	94	15	4552	0.04667572	0.4667572	10
		RAFL09-10-N03	At1g53580 / glyoxalase II, putative (hydroxyacylglutathione hydrolase)		RAFL09-10-N03 ,At1g53580 hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana)
		RAFL05-10-D21	At1g54120 / expressed protein		At1g54120 ,RAFL05-10-D21 expressed protein
	5_18900001_19200000				2	94	15	4552	0.04667572	0.6534601	14
		RAFL09-09-E01	At5g47560 / sodium/dicarboxylate cotransporter, putative		RAFL09-09-E01 ,At5g47560 sodium/dicarboxylate cotransporter, putative similar to SWISS-PROT:Q13183 renal sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
		RAFL11-13-F11	At5g47550 / expressed protein		RAFL11-13-F11 ,At5g47550 cysteine protease inhibitor, putative / cystatin, putative similar to SP|P09229 Cysteine proteinase inhibitor-I (Oryzacystatin-I) {Oryza sativa}; contains Pfam profile PF00031: Cystatin domain
Cluster:9-0					A	B	C	D	P	P'	N
	1_19770001_19800000				4	28	2	4629	2.7153972E-8	8.146192E-8	3
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
	1_19500001_19800000				4	28	13	4618	4.0860064E-6	4.0860064E-5	10
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
	1_3060001_3090000				2	30	1	4630	1.3631E-4	2.7262E-4	2
		RAFL06-15-H16	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL06-15-H16 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
		RAFL05-18-A06	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL05-18-A06 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
	4_990001_1020000				2	30	1	4630	1.3631E-4	2.7262E-4	2
		RAFL08-10-G22	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		RAFL08-10-G22 ,At4g02280 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
		RAFL05-18-M07	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At4g02280 ,RAFL05-18-M07 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
	5_23400001_23700000				3	29	14	4617	1.870712E-4	0.0022448543	12
		RAFL09-06-F09	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL09-06-F09 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL08-08-I08	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL08-08-I08 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL05-04-J20	At5g59320 / lipid transfer protein 3 (LTP 3)		RAFL05-04-J20 ,At5g59320 lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	5_23610001_23640000				2	30	2	4629	2.7145064E-4	8.1435195E-4	3
		RAFL09-06-F09	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL09-06-F09 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL08-08-I08	At5g59310 / lipid transfer protein 4 (LTP 4)		At5g59310 ,RAFL08-08-I08 lipid transfer protein 4 (LTP4) identical to lipid transfer protein 4 from Arabidopsis thaliana [gi:8571923]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	5_180001_210000				2	30	6	4625	0.0012451953	0.0037355858	3
		RAFL08-13-G20	At5g01520 / C3HC4-type zinc finger protein family		At5g01520 ,RAFL08-13-G20 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL09-17-E14	At5g01520 / C3HC4-type zinc finger protein family		RAFL09-17-E14 ,At5g01520 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
	5_1_300000				2	30	14	4617	0.0051567336	0.05672407	11
		RAFL08-13-G20	At5g01520 / C3HC4-type zinc finger protein family		At5g01520 ,RAFL08-13-G20 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL09-17-E14	At5g01520 / C3HC4-type zinc finger protein family		RAFL09-17-E14 ,At5g01520 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
	4_900001_1200000				2	30	15	4616	0.005819355	0.075651616	13
		RAFL08-10-G22	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		RAFL08-10-G22 ,At4g02280 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
		RAFL05-18-M07	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At4g02280 ,RAFL05-18-M07 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
	3_7980001_8010000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL08-09-M05	At3g22600 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At3g22600 ,RAFL08-09-M05 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	3_21270001_21300000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
	5_23640001_23670000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-04-J20	At5g59320 / lipid transfer protein 3 (LTP 3)		RAFL05-04-J20 ,At5g59320 lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	3_22200001_22230000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL09-12-B03	At3g60140 / glycosyl hydrolase family 1, beta-glucosidase		At3g60140 ,RAFL09-12-B03 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547
	4_14940001_14970000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-02-O17	At4g33150 / lysine-ketoglutarate reductase/saccharopine		At4g33150 ,RAFL05-02-O17 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from [Arabidopsis thaliana]
	5_26370001_26400000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL08-10-E21	At5g66780 / expressed protein		At5g66780 ,RAFL08-10-E21 expressed protein
	5_19230001_19260000				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL06-09-N04	At5g48180 / Kelch repeats protein family		RAFL06-09-N04 ,At5g48180 kelch repeat-containing protein contains Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe]
	3_21000001_21300000				2	30	17	4614	0.0072546974	0.11607516	16
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
	1_3000001_3300000				2	30	19	4612	0.008833496	0.13250244	15
		RAFL06-15-H16	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL06-15-H16 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
		RAFL05-18-A06	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL05-18-A06 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
	5_26100001_26400000				2	30	19	4612	0.008833496	0.12366895	14
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
		RAFL08-10-E21	At5g66780 / expressed protein		At5g66780 ,RAFL08-10-E21 expressed protein
	1_18000001_21000000				4	28	120	4511	0.00962857	0.2888571	30
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
	2_15780001_15810000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-12-N10	At2g37870 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g37870 ,RAFL05-12-N10 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	3_21090001_21120000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
	2_14160001_14190000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-14-E15	At2g33590 / cinnamoyl-CoA reductase family		At2g33590 ,RAFL05-14-E15 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Eucalyptus gunnii [GI:2058311]
	2_16020001_16050000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-08-B14	At2g38400 / alanine--glyoxylate aminotransferase (beta-alanine-pyruvate aminotransferase/AGT), putative		RAFL05-08-B14 ,At2g38400 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus}; contains Pfam profile PF00202: aminotransferase, class III
	5_4170001_4200000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-19-F21	At5g13170 / nodulin MtN3 family protein		RAFL05-19-F21 ,At5g13170 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]; identical to cDNA senescence-associated protein (SAG29) mRNA, partial cds GI:4426938
	3_5790001_5820000				1	31	1	4630	0.013679437	0.027358875	2
		RAFL05-13-E04	At3g17000 / ubiquitin-conjugating enzyme, putative		RAFL05-13-E04 ,At3g17000 ubiquitin-conjugating enzyme, putative similar to Non-Canonical UBiquitin Conjugating Enzyme 1 (NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus] GI:7363050, [Homo sapiens] GI:7362973; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme
	5_3210001_3240000				1	31	2	4629	0.020451	0.061353	3
		RAFL06-14-F12	At5g10300 / hydrolase, alpha/beta fold family		RAFL06-14-F12 ,At5g10300 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, alpha-hydroxynitrile lyase [Manihot esculenta] GI:2780225; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	5_26220001_26250000				1	31	2	4629	0.020451	0.061353	3
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
	3_510001_540000				1	31	3	4628	0.027177518	0.08153255	3
		RAFL05-05-G20	At3g02480 / expressed protein		At3g02480 ,RAFL05-05-G20 ABA-responsive protein-related similar to ABA-inducible protein [Fagus sylvatica] GI:3901016, cold-induced protein kin1 [Brassica napus] GI:167146
	2_12570001_12600000				1	31	3	4628	0.027177518	0.10871007	4
		RAFL04-17-K13	At2g29460 / glutathione transferase, putative		RAFL04-17-K13 ,At2g29460 glutathione S-transferase, putative
	4_17370001_17400000				1	31	3	4628	0.027177518	0.10871007	4
		RAFL05-01-D05	At4g39670 / expressed protein		At4g39670 ,RAFL05-01-D05 expressed protein
	1_2010001_2040000				1	31	5	4626	0.04049657	0.16198628	4
		RAFL05-14-F20	At1g06570 / 4-hydroxyphenylpyruvate dioxygenase (HPD)		RAFL05-14-F20 ,At1g06570 4-hydroxyphenylpyruvate dioxygenase (HPD) identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
	3_21000001_24000000				3	29	112	4519	0.043145064	1.337497	31
		RAFL05-09-N10	At3g57010 / strictosidine synthase-related		At3g57010 ,RAFL05-09-N10 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]
		RAFL05-19-C02	At3g57520 / glycosyl hydrolase family 36		At3g57520 ,RAFL05-19-C02 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
		RAFL09-12-B03	At3g60140 / glycosyl hydrolase family 1, beta-glucosidase		At3g60140 ,RAFL09-12-B03 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547
	2_14100001_14400000				1	31	6	4625	0.047089677	0.32962775	7
		RAFL05-14-E15	At2g33590 / cinnamoyl-CoA reductase family		At2g33590 ,RAFL05-14-E15 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Eucalyptus gunnii [GI:2058311]
Cluster:5-1					A	B	C	D	P	P'	N
	1_630001_660000				3	279	0	4381	2.1897607E-4	2.1897607E-4	1
		RAFL07-18-K04	At1g02850 / glycosyl hydrolase family 1		RAFL07-18-K04 ,At1g02850 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL09-06-G17	At1g02850 / glycosyl hydrolase family 1		At1g02850 ,RAFL09-06-G17 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL07-14-E05	At1g02920 / glutathione transferase, putative		RAFL07-14-E05 ,At1g02920 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA GI:443697.
	3_5550001_5580000				4	278	7	4374	0.0030783936	0.021548755	7
		RAFL06-13-O22	At3g16400 / jacalin lectin family		At3g16400 ,RAFL06-13-O22 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL08-11-D18	At3g16400 / jacalin lectin family		RAFL08-11-D18 ,At3g16400 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL09-17-K06	At3g16400 / jacalin lectin family		At3g16400 ,RAFL09-17-K06 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
		RAFL09-14-M02	At3g16400 / jacalin lectin family		At3g16400 ,RAFL09-14-M02 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767, epithiospecifier [Arabidopsis thaliana] GI:16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Kelch motif
	1_5220001_5250000				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-17-P16	At1g15220 / expressed protein		At1g15220 ,RAFL05-17-P16 cytochrome c biogenesis protein family contains Pfam PF03918: Cytochrome C biogenesis protein; similar to Cytochrome c-type biogenesis protein cycL precursor.(SP:P45405) {Bradyrhizobium japonicum}
		RAFL05-19-H19	At1g15180 / MATE efflux protein - related		RAFL05-19-H19 ,At1g15180 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family
	5_23220001_23250000				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL09-09-K03	At5g58110 / expressed protein		RAFL09-09-K03 ,At5g58110 expressed protein predicted proteins, Homo sapiens and Drosophila melanogaster
		RAFL11-11-A11	At5g58130 / RRM-containing protein		At5g58130 ,RAFL11-11-A11 RNA recognition motif (RRM)-containing protein
	2_18300001_18330000				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-16-D13	At2g44500 / axi 1 protein from Nicotiana tabacum -related		RAFL05-16-D13 ,At2g44500 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'axi 1 protein from Nicotiana tabacum -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
		RAFL05-19-F23	At2g44520 / UbiA prenyltransferase family		At2g44520 ,RAFL05-19-F23 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae}
	3_840001_870000				2	280	0	4381	0.0036451695	0.0036451695	1
		RAFL05-21-L06	At3g03570 / expressed protein		RAFL05-21-L06 ,At3g03570 expressed protein similar to hypothetical protein GB:CAB38918 [Arabidopsis thaliana]
		RAFL05-03-L14	At3g03530 / phosphoesterase family		At3g03530 ,RAFL05-03-L14 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family
	2_18300001_18600000				4	278	9	4372	0.0060573313	0.054515984	9
		RAFL08-09-K17	At2g44670 / senescence-associated protein -related		RAFL08-09-K17 ,At2g44670 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana];
		RAFL05-16-D13	At2g44500 / axi 1 protein from Nicotiana tabacum -related		RAFL05-16-D13 ,At2g44500 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'axi 1 protein from Nicotiana tabacum -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
		RAFL05-19-F23	At2g44520 / UbiA prenyltransferase family		At2g44520 ,RAFL05-19-F23 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae}
		RAFL08-18-G13	At2g44680 / casein kinase II beta chain, putative		RAFL08-18-G13 ,At2g44680 casein kinase II beta chain, putative similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana] SWISS-PROT:O81275
	1_10800001_11100000				3	279	4	4377	0.0063829273	0.031914636	5
		RAFL04-10-M14	At1g30890 / expressed protein		At1g30890 ,RAFL04-10-M14 integral membrane HRF1 family protein contains Pfam domain PF03878: Hrf1 family
		RAFL05-09-F05	At1g30630 / coatomer protein epsilon subunit (COPE) family		RAFL05-09-F05 ,At1g30630 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus; ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this gene
		RAFL04-09-I09	At1g30970 / zinc finger protein -related		At1g30970 ,RAFL04-09-I09 zinc finger (C2H2 type) family protein contains Pfam domain PF00096: Zinc finger, C2H2 type
	5_7800001_8100000				4	278	10	4371	0.008082774	0.072744966	9
		RAFL07-17-N07	At5g23890 / expressed protein		At5g23890 ,RAFL07-17-N07 expressed protein weak similarity to SP|P12957 Caldesmon (CDM) {Gallus gallus}
		RAFL08-12-D06	At5g23660 / nodulin MtN3 family protein		At5g23660 ,RAFL08-12-D06 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]
		RAFL08-11-O19	At5g23670 / serine C-palmitoyltransferase, putative		At5g23670 ,RAFL08-11-O19 serine C-palmitoyltransferase (LCB2) identical to serine palmitoyltransferase [Arabidopsis thaliana] GI:9309380; similar to serine palmitoyltransferase from Solanum tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL05-15-M17	At5g23390 / expressed protein		At5g23390 ,RAFL05-15-M17 expressed protein contains Pfam profile: PF04842 plant protein of unknown function (DUF639)
	5_25260001_25290000				2	280	1	4380	0.010497557	0.020995114	2
		RAFL04-18-F13	At5g63910 / expressed protein		At5g63910 ,RAFL04-18-F13 expressed protein
		RAFL05-15-F08	At5g63860 / UVB-resistance protein UVR8 (gb|AAD43920.1)		RAFL05-15-F08 ,At5g63860 UVB-resistance protein (UVR8) identical to UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1) [Arabidopsis thaliana]; contains Pfam 00415: Regulator of chromosome condensation (RCC1)
	1_9060001_9090000				2	280	1	4380	0.010497557	0.020995114	2
		RAFL04-13-O14	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL04-13-O14 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL03-09-A18	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL03-09-A18 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
	5_23100001_23400000				5	277	20	4361	0.015251257	0.2135176	14
		RAFL06-11-A21	At5g58220 / unknown protein (pir||T34863) -related		At5g58220 ,RAFL06-11-A21 expressed protein
		RAFL04-09-A13	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL04-09-A13 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL09-09-K03	At5g58110 / expressed protein		RAFL09-09-K03 ,At5g58110 expressed protein predicted proteins, Homo sapiens and Drosophila melanogaster
		RAFL11-11-A11	At5g58130 / RRM-containing protein		At5g58130 ,RAFL11-11-A11 RNA recognition motif (RRM)-containing protein
		RAFL08-08-O08	At5g57960 / GTP binding protein-related		RAFL08-08-O08 ,At5g57960 GTP-binding family protein similar to SP|P25519 GTP-binding protein hflX {Escherichia coli}
	5_6000001_9000000				16	266	125	4256	0.017493017	0.48980445	28
		RAFL11-03-N11	At5g20020 / GTP-binding nuclear protein (RAN-2)		RAFL11-03-N11 ,At5g20020 Ras-related GTP-binding nuclear protein (RAN-2) identical to GTP-binding nuclear protein RAN-2 SP:P41917 from [Arabidopsis thaliana]
		RAFL07-17-O15	At5g19180 / RUB-activating enzyme ECR1		At5g19180 ,RAFL07-17-O15 ubiquitin activating enzyme, putative (ECR1) identical to putative ubiquitin activating enzyme E1 [Arabidopsis thaliana] GI:2952433; similar to NEDD8 activating enzyme [Mus musculus] GI:17061821
		RAFL07-17-N07	At5g23890 / expressed protein		At5g23890 ,RAFL07-17-N07 expressed protein weak similarity to SP|P12957 Caldesmon (CDM) {Gallus gallus}
		RAFL08-12-D06	At5g23660 / nodulin MtN3 family protein		At5g23660 ,RAFL08-12-D06 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula]
		RAFL08-11-O19	At5g23670 / serine C-palmitoyltransferase, putative		At5g23670 ,RAFL08-11-O19 serine C-palmitoyltransferase (LCB2) identical to serine palmitoyltransferase [Arabidopsis thaliana] GI:9309380; similar to serine palmitoyltransferase from Solanum tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL09-16-N12	At5g19820 / expressed protein		RAFL09-16-N12 ,At5g19820 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130 PBS lyase HEAT-like repeat
		RAFL05-15-P17	At5g19150 / expressed protein		RAFL05-15-P17 ,At5g19150 carbohydrate kinase family contains Pfam profile PF01256: Carbohydrate kinase
		RAFL04-17-B06	At5g22060 / DnaJ protein, putative		RAFL04-17-B06 ,At5g22060 DNAJ heat shock protein, putative strong similarity to SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL06-07-D07	At5g20020 / GTP-binding nuclear protein (RAN-2)		RAFL06-07-D07 ,At5g20020 Ras-related GTP-binding nuclear protein (RAN-2) identical to GTP-binding nuclear protein RAN-2 SP:P41917 from [Arabidopsis thaliana]
		RAFL07-12-C22	At5g19130 / GPAA1 - like protein		At5g19130 ,RAFL07-12-C22 GPI transamidase component family protein / Gaa1-like family protein contains Pfam profile: PF04114 Gaa1-like, GPI transamidase component
		RAFL07-08-I10	At5g22460 / esterase/lipase/thioesterase family		At5g22460 ,RAFL07-08-I10 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379
		RAFL04-20-B01	At5g21010 / expressed protein		At5g21010 ,RAFL04-20-B01 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL04-14-K03	At5g18590 / RanGAP1 interacting protein		At5g18590 ,RAFL04-14-K03 kelch repeat-containing protein identical to RanGAP1 interacting protein (GI:21950739) [Arabidopsis thaliana]; similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe]; contains Pfam PF01344: Kelch motif (5 repeats)
		RAFL05-08-E17	At5g22330 / Ruv DNA-helicase-related protein		At5g22330 ,RAFL05-08-E17 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus]
		RAFL05-15-M17	At5g23390 / expressed protein		At5g23390 ,RAFL05-15-M17 expressed protein contains Pfam profile: PF04842 plant protein of unknown function (DUF639)
		RAFL04-13-H19	At5g18620 / DNA-dependent ATPase, putative		RAFL04-13-H19 ,At5g18620 DNA-dependent ATPase, putative similar to DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00249: Myb-like DNA-binding domain
	1_9000001_9300000				3	279	7	4374	0.019107534	0.114645205	6
		RAFL05-20-P12	At1g26470 / expressed protein		At1g26470 ,RAFL05-20-P12 expressed protein
		RAFL04-13-O14	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL04-13-O14 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL03-09-A18	At1g26270 / phosphatidylinositol 3- and 4-kinase family		At1g26270 ,RAFL03-09-A18 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
	2_18360001_18390000				2	280	2	4379	0.02015854	0.06047562	3
		RAFL08-09-K17	At2g44670 / senescence-associated protein -related		RAFL08-09-K17 ,At2g44670 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana];
		RAFL08-18-G13	At2g44680 / casein kinase II beta chain, putative		RAFL08-18-G13 ,At2g44680 casein kinase II beta chain, putative similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana] SWISS-PROT:O81275
	4_16590001_16620000				2	280	2	4379	0.02015854	0.06047562	3
		RAFL07-07-F08	At4g37550 / formamidase - like protein		RAFL07-07-F08 ,At4g37550 formamidase, putative / formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family
		RAFL04-13-J09	At4g37560 / formamidase - like protein		At4g37560 ,RAFL04-13-J09 formamidase, putative / formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family
	3_6600001_6900000				3	279	9	4372	0.03202454	0.25619632	8
		RAFL11-01-B05	At3g19515 / expressed protein		RAFL11-01-B05 ,At3g19515 expressed protein
		RAFL05-01-I13	At3g19360 / expressed protein		At3g19360 ,RAFL05-01-I13 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL05-13-I08	At3g19553 / amino acid permease -related		RAFL05-13-I08 ,At3g19553 amino acid permease family protein weak similarity to aspartate/glutamate transporter 1 [Mus musculus] GI:21322754; contains Pfam profile PF00324: Amino acid permease
	4_7500001_7800000				2	280	3	4378	0.0322657	0.0967971	3
		RAFL04-18-L17	At4g15010 / mitochondrial carrier protein family		RAFL04-18-L17 ,At4g15010 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein
		RAFL07-08-H17	At4g15430 / ERD4 protein-related		At4g15430 ,RAFL07-08-H17 early-responsive to dehydration protein-related / ERD protein-related similar to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
	5_7200001_7500000				3	279	10	4371	0.039814703	0.39814702	10
		RAFL04-17-B06	At5g22060 / DnaJ protein, putative		RAFL04-17-B06 ,At5g22060 DNAJ heat shock protein, putative strong similarity to SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL07-08-I10	At5g22460 / esterase/lipase/thioesterase family		At5g22460 ,RAFL07-08-I10 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379
		RAFL05-08-E17	At5g22330 / Ruv DNA-helicase-related protein		At5g22330 ,RAFL05-08-E17 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus]
	3_600001_900000				3	279	10	4371	0.039814703	0.39814702	10
		RAFL05-21-L06	At3g03570 / expressed protein		RAFL05-21-L06 ,At3g03570 expressed protein similar to hypothetical protein GB:CAB38918 [Arabidopsis thaliana]
		RAFL05-03-L14	At3g03530 / phosphoesterase family		At3g03530 ,RAFL05-03-L14 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family
		RAFL04-12-J09	At3g03420 / expressed protein		RAFL04-12-J09 ,At3g03420 Ku70-binding family protein similar to Ku70-binding protein GB:AAD31085 GI:4867999 [Homo sapiens]; contains Prosite PS00142: Neutral zinc metallopeptidases, zinc-binding region signature
	3_23220001_23250000				2	280	4	4377	0.046489924	0.23244964	5
		RAFL09-12-M15	At3g62830 / NAD-dependent epimerase/dehydratase family		At3g62830 ,RAFL09-12-M15 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2
		RAFL05-17-G20	At3g62830 / NAD-dependent epimerase/dehydratase family		At3g62830 ,RAFL05-17-G20 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2
	1_600001_900000				3	279	11	4370	0.048468865	0.48468864	10
		RAFL07-18-K04	At1g02850 / glycosyl hydrolase family 1		RAFL07-18-K04 ,At1g02850 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL09-06-G17	At1g02850 / glycosyl hydrolase family 1		At1g02850 ,RAFL09-06-G17 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
		RAFL07-14-E05	At1g02920 / glutathione transferase, putative		RAFL07-14-E05 ,At1g02920 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]; supported by cDNA GI:443697.
Cluster:2-1					A	B	C	D	P	P'	N
	2_6750001_6780000				4	240	0	4419	7.32362E-6	7.32362E-6	1
		RAFL08-13-H16	At2g15620 / ferredoxin--nitrite reductase		RAFL08-13-H16 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-17-P17	At2g15620 / ferredoxin--nitrite reductase		RAFL07-17-P17 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-10-K10	At2g15620 / ferredoxin--nitrite reductase		RAFL07-10-K10 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL09-17-G12	At2g15620 / ferredoxin--nitrite reductase		RAFL09-17-G12 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
	2_6600001_6900000				4	240	5	4414	7.48199E-4	0.0037409952	5
		RAFL08-13-H16	At2g15620 / ferredoxin--nitrite reductase		RAFL08-13-H16 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-17-P17	At2g15620 / ferredoxin--nitrite reductase		RAFL07-17-P17 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL07-10-K10	At2g15620 / ferredoxin--nitrite reductase		RAFL07-10-K10 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
		RAFL09-17-G12	At2g15620 / ferredoxin--nitrite reductase		RAFL09-17-G12 ,At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe-4S domain
	3_9270001_9300000				3	241	3	4416	0.0025160299	0.0100641195	4
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
	5_4380001_4410000				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-F22	At5g13650 / GTP-binding protein typA (tyrosine phosphorylated protein A)		At5g13650 ,RAFL06-08-F22 elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain,PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2
		RAFL02-09-C19	At5g13630 / cobalamin biosynthesis protein		At5g13630 ,RAFL02-09-C19 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) nearly identical to magnesium chelatase subunit GI:1154627 from [Arabidopsis thaliana]; contains Pfam profile: PF02514 CobN/magnesium chelatase family protein
	5_10470001_10500000				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-N05	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL06-08-N05 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
		RAFL07-11-O19	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL07-11-O19 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
	1_25860001_25890000				2	242	0	4419	0.00272746	0.00272746	1
		RAFL04-15-N01	At1g69740 / porphobilinogen synthase (delta-aminolevulinic acid dehydratase), putative		RAFL04-15-N01 ,At1g69740 porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative similar to delta-aminolevulinic acid dehydratase (Alad) GI:493019 [SP|P43210] from Glycine max, SP|P24493 from Spinacia oleracea, SP|P30124 from Pisum sativum
		RAFL05-10-J03	At1g69740 / porphobilinogen synthase (delta-aminolevulinic acid dehydratase), putative		At1g69740 ,RAFL05-10-J03 porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative similar to delta-aminolevulinic acid dehydratase (Alad) GI:493019 [SP|P43210] from Glycine max, SP|P24493 from Spinacia oleracea, SP|P30124 from Pisum sativum
	3_8370001_8400000				2	242	0	4419	0.00272746	0.00272746	1
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
	3_19800001_20100000				6	238	22	4397	0.002746123	0.041191842	15
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
	Chromosome:3				67	177	850	3569	0.002774971	0.09157405	33
		RAFL05-09-L11	At3g48360 / expressed protein		RAFL05-09-L11 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL06-08-P20	At3g07110 / 60S ribosomal protein L13A (RPL13aA)		RAFL06-08-P20 ,At3g07110 60S ribosomal protein L13A (RPL13aA) similar to ribosomal protein L13A GB:O49885 [Lupinus luteus]
		RAFL05-03-N22	At3g15410 / leucine rich repeat protein family		RAFL05-03-N22 ,At3g15410 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596; identical to leucine-rich repeat protein [Arabidopsis thaliana] gi|2760084|emb|CAA76000
		RAFL04-12-O11	At3g27740 / carbamoyl-phosphate synthase (glutamine-hydrolyzing) (glutamine-dependent carbamoyl-phosphate synthase) small subunit		At3g27740 ,RAFL04-12-O11 carbamoyl-phosphate synthase [glutamine-hydrolyzing] (CARA) / glutamine-dependent carbamoyl-phosphate synthase small subunit identical to carbamoyl phosphate synthetase small subunit GI:2462781 [Arabidopsis thaliana]
		RAFL07-10-D04	At3g61150 / homeodomain protein, GLABRA2 like 1 (HD-GL2-1)		At3g61150 ,RAFL07-10-D04 homeobox-leucine zipper family protein / homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis thaliana, EMBL:AF077335
		RAFL09-15-G07	At3g62250 / ubiquitin extension protein (UBQ5)/40S ribosomal protein S27A (RPS27aC)		RAFL09-15-G07 ,At3g62250 ubiquitin extension protein 5 (UBQ5) / 40S ribosomal protein S27A (RPS27aC) identical to GI:166933, GI:166934
		RAFL07-18-N03	At3g59780 / expressed protein		RAFL07-18-N03 ,At3g59780 expressed protein
		RAFL06-08-B12	At3g01190 / peroxidase, putative		RAFL06-08-B12 ,At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) identical to SP|Q43735 Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a) {Arabidopsis thaliana}
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL04-15-J09	At3g58140 / phenylalanine-tRNA synthetase-related protein		At3g58140 ,RAFL04-15-J09 phenylalanyl-tRNA synthetase class IIc family protein similar to phenylalanine-tRNA synthetase [Homo sapiens] GI:3983103; contains Pfam profile PF01409: tRNA synthetases class II core domain (F)
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-09-H09	At3g48930 / 40S ribosomal protein S11 (RPS11A)		At3g48930 ,RAFL06-09-H09 40S ribosomal protein S11 (RPS11A)
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL02-02-B08	At3g02540 / RAD23 -related		At3g02540 ,RAFL02-02-B08 ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain;
		RAFL02-02-A04	At3g54890 / light-harvesting chlorophyll a/b binding protein		At3g54890 ,RAFL02-02-A04 chlorophyll A-B binding protein / LHCI type I (CAB) identical to chlorophyll A/B-binding protein [Arabidopsis thaliana] GI:16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-11-J16	At3g15950 / expressed protein		RAFL07-11-J16 ,At3g15950 DNA topoisomerase-related similar to DNA topoisomerase IV subunit A (GI:26454107) [Mycoplasma penetrans]
		RAFL04-17-H07	At3g57610 / adenylosuccinate synthetase		At3g57610 ,RAFL04-17-H07 adenylosuccinate synthetase (ADSS) identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) [Arabidopsis thaliana]
		RAFL09-06-J23	At3g16470 / jacalin lectin family		RAFL09-06-J23 ,At3g16470 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767
		RAFL04-13-D06	At3g23940 / dihydroxyacid dehydratase -related		RAFL04-13-D06 ,At3g23940 dehydratase family contains Pfam profile: PF00920 dehydratase family
		RAFL07-18-J24	At3g02690 / expressed integral membrane protein		RAFL07-18-J24 ,At3g02690 integral membrane family protein similar to PecM protein (GI:5852331) {Vogesella indigofera} and PecM protein (SP:P42194) [Erwinia chrysanthemi]
		RAFL06-14-I03	At3g60770 / 40S ribosomal protein S13 (RPS13A)		RAFL06-14-I03 ,At3g60770 40S ribosomal protein S13 (RPS13A) AtRPS13A mRNA for cytoplasmic ribosomal protein S13, Arabidopsis thaliana,AB031739
		RAFL06-08-B09	At3g11510 / 40S ribosomal protein S14 (RPS14B)		At3g11510 ,RAFL06-08-B09 40S ribosomal protein S14 (RPS14B) similar to 40S ribosomal protein S14 GB:P19950 [Zea mays]
		RAFL05-05-K17	At3g03780 / methionine synthase -related		RAFL05-05-K17 ,At3g03780 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative / vitamin-B12-independent methionine synthase, putative / cobalamin-independent methionine synthase, putative very strong similarity to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}; contains Pfam profile PF01717: Methionine synthase, vitamin-B12 independent
		RAFL09-06-A22	At3g62870 / 60S ribosomal protein L7A (RPL7aB)		RAFL09-06-A22 ,At3g62870 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL04-18-D21	At3g57230 / MADS-box protein		At3g57230 ,RAFL04-18-D21 MADS-box protein (AGL16) MADS-box transcription factor DEFH125 - Antirrhinum majus, PIR:T17029; contains Pfam domain PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); contains Pfam domain PF01486: K-box region
		RAFL06-16-N12	At3g46740 / chloroplast import-associated channel protein homolog		At3g46740 ,RAFL06-16-N12 chloroplast outer envelope protein, putative similar to chloroplastic outer envelope membrane protein (OEP75) [Pisum sativum] GI:633607; contains Pfam profile PF01103: outer membrane protein, OMP85 family
		RAFL07-14-F14	At3g14840 / receptor-related serine/threonine kinase		At3g14840 ,RAFL07-14-F14 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; contains 2 predicted transmembrane domains
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL05-08-L19	At3g43540 / expressed protein		At3g43540 ,RAFL05-08-L19 expressed protein hypothetical protein slr1699 - Synechocystis sp. (strain PCC 6803), PIR:S75306
		RAFL06-10-G07	At3g11500 / small nuclear ribonucleo protein polypeptide G -related		At3g11500 ,RAFL06-10-G07 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens]
		RAFL05-20-D01	At3g51510 / expressed protein		RAFL05-20-D01 ,At3g51510 expressed protein
		RAFL09-07-O12	At3g26520 / tonoplast intrinsic protein, putative		At3g26520 ,RAFL09-07-O12 tonoplast intrinsic protein, putative similar to tonoplast intrinsic protein GI:5081419 from [Brassica napus]
		RAFL04-13-N21	At3g02870 / myo-inositol monophosphatase -related		RAFL04-13-N21 ,At3g02870 inositol-1(or 4)-monophosphatase, putative / inositol monophosphatase, putative / IMPase, putative similar to SP|P54928 Inositol-1(or 4)-monophosphatase 3 (EC 3.1.3.25) (IMPase 3) (IMP 3) (Inositol monophosphatase 3) {Lycopersicon esculentum}; contains Pfam profile PF00459: Inositol monophosphatase family
		RAFL05-01-G23	At3g49600 / ubiquitin-specific protease 26 (UBP26)		At3g49600 ,RAFL05-01-G23 ubiquitin-specific protease 26 (UBP26) similar to GI:11993492; RNA binding protein - Homo sapiens, EMBL:AB016089 (N-terminus), several ubiquitin carboxyl-terminal hydrolases from aa pos. 712
		RAFL06-16-M11	At3g18780 / actin 2		At3g18780 ,RAFL06-16-M11 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL06-13-D11	At3g14120 / expressed protein		At3g14120 ,RAFL06-13-D11 expressed protein similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus norvegicus]
		RAFL07-16-B09	At3g48360 / expressed protein		RAFL07-16-B09 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL05-17-P11	At3g04920 / 40S ribosomal protein S24 (RPS24A)		At3g04920 ,RAFL05-17-P11 40S ribosomal protein S24 (RPS24A) similar to ribosomal protein S19 GB:445612 [Solanum tuberosum] and similar to ribosomal protein S24 GB:4506703 [Homo sapiens]
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL09-06-K03	At3g26070 / plastid-lipid associated protein PAP/fibrillin family		At3g26070 ,RAFL09-06-K03 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-19-H05	At3g28900 / 60S ribosomal protein L34 (RPL34C)		RAFL05-19-H05 ,At3g28900 60S ribosomal protein L34 (RPL34C) similar to 60S ribosomal protein L34 GB:P41098 [Nicotiana tabacum]
		RAFL02-01-G08	At3g58610 / ketol-acid reductoisomerase		RAFL02-01-G08 ,At3g58610 ketol-acid reductoisomerase identical to ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Swiss-Prot:Q05758) [Arabidopsis thaliana]
		RAFL06-08-E09	At3g54640 / tryptophan synthase, alpha subunit (TSA1)		RAFL06-08-E09 ,At3g54640 tryptophan synthase, alpha subunit (TSA1) identical to gi:619753
		RAFL05-18-N15	At3g15353 / expressed protein		At3g15353 ,RAFL05-18-N15 metallothionein protein, putative
		RAFL04-14-L08	At3g49010 / 60S ribosomal protein L13 (RPL13B)/breast basic conserved protein 1-related (BBC1)		At3g49010 ,RAFL04-14-L08 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1)
		RAFL11-07-J05	At3g16420 / myrosinase binding protein, putative		RAFL11-07-J05 ,At3g16420 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296; contains Pfam profile: PF01419 jacalin-like lectin domain
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-21-D08	At3g18490 / chloroplast nucleoid DNA-binding protein -related		At3g18490 ,RAFL05-21-D08 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
		RAFL04-10-H14	At3g49910 / 60S ribosomal protein L26 (RPL26A)		At3g49910 ,RAFL04-10-H14 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-17-L17	At3g55280 / 60S ribosomal protein L23A (RPL23aB)		RAFL05-17-L17 ,At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins
		RAFL04-16-M03	At3g20790 / expressed protein		At3g20790 ,RAFL04-16-M03 oxidoreductase family protein weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
		RAFL05-13-D18	At3g04400 / 60S ribosomal protein L23 (RPL23C)		At3g04400 ,RAFL05-13-D18 60S ribosomal protein L23 (RPL23C) similar to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana tabacum]
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
		RAFL08-13-I06	At3g28180 / glycosyltransferase family 2		RAFL08-13-I06 ,At3g28180 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
		RAFL07-12-K04	At3g20050 / T-complex protein 1, alpha subunit/chaperonin		RAFL07-12-K04 ,At3g20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL05-03-L01	At3g56340 / 40S ribosomal protein S26 homolog		At3g56340 ,RAFL05-03-L01 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26
		RAFL06-12-K17	At3g10060 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase, putative		RAFL06-12-K17 ,At3g10060 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans isomerases
		RAFL07-09-D05	At3g60320 / bZIP protein		At3g60320 ,RAFL07-09-D05 expressed protein contains Pfam profiles: PF04782: protein of unknown function (DUF632), PF04783: protein of unknown function (DUF630)
	5_7980001_8010000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL09-15-M15	At5g23740 / 40S ribosomal protein S11 (RPS11C)		RAFL09-15-M15 ,At5g23740 40S ribosomal protein S11 (RPS11C)
		RAFL05-16-O05	At5g23820 / expressed protein		At5g23820 ,RAFL05-16-O05 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain
	3_17910001_17940000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-09-L11	At3g48360 / expressed protein		RAFL05-09-L11 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL07-16-B09	At3g48360 / expressed protein		RAFL07-16-B09 ,At3g48360 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
	1_1200001_1230000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL05-18-P15 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL07-15-M07 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
	2_510001_540000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL04-13-G03	At2g02130 / plant defensin protein, putative (PDF2.3)		At2g02130 ,RAFL04-13-G03 plant defensin-fusion protein, putative (PDF2.3) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be)
		RAFL05-08-E12	At2g02100 / plant defensin protein, putative (PDF2.2)		RAFL05-08-E12 ,At2g02100 plant defensin-fusion protein, putative (PDF2.2) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT:O65740
	3_3600001_3630000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL06-08-B09	At3g11510 / 40S ribosomal protein S14 (RPS14B)		At3g11510 ,RAFL06-08-B09 40S ribosomal protein S14 (RPS14B) similar to 40S ribosomal protein S14 GB:P19950 [Zea mays]
		RAFL06-10-G07	At3g11500 / small nuclear ribonucleo protein polypeptide G -related		At3g11500 ,RAFL06-10-G07 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens]
	3_19950001_19980000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
	1_26700001_26730000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-10-F15	At1g71900 / expressed protein		RAFL05-10-F15 ,At1g71900 expressed protein
		RAFL07-17-J24	At1g71880 / sucrose transporter SUC1 (sucrose-proton symporter)		At1g71880 ,RAFL07-17-J24 sucrose transporter / sucrose-proton symporter (SUC1) identical to sucrose-proton symporter SUC1 [Arabidopsis thaliana] GI:407094
	2_8460001_8490000				2	242	1	4418	0.00789916	0.01579832	2
		RAFL04-09-E04	At2g19800 / expressed protein		RAFL04-09-E04 ,At2g19800 expressed protein similar to myo-inositol oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
		RAFL05-18-M20	At2g19730 / 60S ribosomal protein L28 (RPL28A)		At2g19730 ,RAFL05-18-M20 60S ribosomal protein L28 (RPL28A)
	4_7200001_7500000				3	241	7	4412	0.012910854	0.09037598	7
		RAFL06-10-J18	At4g14320 / 60S ribosomal protein L36a/L44 (RPL36aB)		RAFL06-10-J18 ,At4g14320 60S ribosomal protein L36a/L44 (RPL36aB)
		RAFL07-16-L09	At4g14420 / elicitor like protein		At4g14420 ,RAFL07-16-L09 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] gi|1762945|gb|AAC49975
		RAFL05-21-A10	At4g14870 / expressed protein		At4g14870 ,RAFL05-21-A10 expressed protein
	1_26250001_26280000				2	242	2	4417	0.01525385	0.045761548	3
		RAFL05-07-N11	At1g70580 / alanine aminotransferase, putative		RAFL05-07-N11 ,At1g70580 glutamate:glyoxylate aminotransferase 2 (GGT2) identical to glutamate:glyoxylate aminotransferase 2 [Arabidopsis thaliana] GI:24461829; similar to alanine aminotransferase from Panicum miliaceum [SP|P34106], GI:4730884 from Oryza sativa; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL04-09-J06	At1g70600 / 60S ribosomal protein L27A (RPL27aC)		At1g70600 ,RAFL04-09-J06 60S ribosomal protein L27A (RPL27aC) identical to 60S ribosomal protein L27A GB:P49637 [Arabidopsis thaliana]
	2_16890001_16920000				2	242	2	4417	0.01525385	0.045761548	3
		RAFL06-13-E16	At2g40630 / expressed protein		At2g40630 ,RAFL06-13-E16 expressed protein
		RAFL04-14-J20	At2g40660 / methionyl-tRNA synthetase -related		RAFL04-14-J20 ,At2g40660 tRNA-binding region domain-containing protein similar to SP|Q12904 Multisynthetase complex auxiliary component p43 [Contains: Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Homo sapiens}; contains Pfam profile PF01588: Putative tRNA binding domain
	3_8430001_8460000				2	242	2	4417	0.01525385	0.045761548	3
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
	3_7830001_7860000				2	242	2	4417	0.01525385	0.045761548	3
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
	5_1_3000000				14	230	121	4298	0.015853178	0.4597422	29
		RAFL06-11-K09	At5g03850 / 40S ribosomal protein S28 (RPS28B)		RAFL06-11-K09 ,At5g03850 40S ribosomal protein S28 (RPS28B) ribosomal protein S28, Arabidopsis thaliana, EMBL:ATRP28A
		RAFL08-09-J20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-09-J20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-14-M14	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-M14 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL09-14-E08	At5g06340 / diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative		RAFL09-14-E08 ,At5g06340 diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI:1888557, [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain
		RAFL08-15-K17	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL08-15-K17 40S ribosomal protein S4 (RPS4B)
		RAFL02-04-I12	At5g04430 / KH domain protein Nova, putative		At5g04430 ,RAFL02-04-I12 KH domain-containing protein NOVA, putative astrocytic NOVA-like RNA-binding protein, Homo sapiens, U70477
		RAFL08-10-A13	At5g04590 / sulphite reductase		At5g04590 ,RAFL08-10-A13 sulfite reductase / ferredoxin (SIR) identical to sulfite reductase [Arabidopsis thaliana] GI:804953, GI:2584721
		RAFL06-08-F19	At5g02120 / one helix protein (OHP)		RAFL06-08-F19 ,At5g02120 thylakoid membrane one helix protein (OHP) identical to one helix protein GI:3283057 from [Arabidopsis thaliana]
		RAFL05-05-M24	At5g02960 / 40S ribosomal protein S23 (RPS23B)		At5g02960 ,RAFL05-05-M24 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673
		RAFL06-15-O15	At5g09220 / amino acid permease 2 (AAP2)		At5g09220 ,RAFL06-15-O15 amino acid permease 2 (AAP2) identical to amine acid permease AAP2 [Arabidopsis thaliana] GI:510236
		RAFL08-14-N17	At5g07020 / proline-rich protein family		RAFL08-14-N17 ,At5g07020 proline-rich family protein
		RAFL08-17-E06	At5g07860 / hydroxycinnamoyl benzoyltransferase-related		At5g07860 ,RAFL08-17-E06 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi:2239091]; contains Pfam transferase family domain PF002458
		RAFL05-12-E19	At5g07340 / calnexin, putative		At5g07340 ,RAFL05-12-E19 calnexin, putative identical to calnexin homolog 2 from Arabidopsis thaliana [SP|Q38798], strong similarity to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262 calreticulin family
		RAFL09-12-B05	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL09-12-B05 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
	5_2100001_2400000				3	241	9	4410	0.021903817	0.19713435	9
		RAFL08-15-K17	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL08-15-K17 40S ribosomal protein S4 (RPS4B)
		RAFL08-14-N17	At5g07020 / proline-rich protein family		RAFL08-14-N17 ,At5g07020 proline-rich family protein
		RAFL05-12-E19	At5g07340 / calnexin, putative		At5g07340 ,RAFL05-12-E19 calnexin, putative identical to calnexin homolog 2 from Arabidopsis thaliana [SP|Q38798], strong similarity to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262 calreticulin family
	5_10200001_10500000				2	242	3	4416	0.024550742	0.098202966	4
		RAFL06-08-N05	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL06-08-N05 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
		RAFL07-11-O19	At5g28540 / luminal binding protein 1 precursor (BiP-1) (AtBP1)		At5g28540 ,RAFL07-11-O19 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT:Q9LKR3 PMID:8888624
	5_23820001_23850000				2	242	3	4416	0.024550742	0.098202966	4
		RAFL04-10-F11	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL04-10-F11 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL07-08-L21	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL07-08-L21 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
	2_120001_150000				2	242	3	4416	0.024550742	0.098202966	4
		RAFL11-06-J19	At2g01250 / 60S ribosomal protein L7 (RPL7B)		At2g01250 ,RAFL11-06-J19 60S ribosomal protein L7 (RPL7B)
		RAFL11-09-C11	At2g01250 / 60S ribosomal protein L7 (RPL7B)		At2g01250 ,RAFL11-09-C11 60S ribosomal protein L7 (RPL7B)
	3_20070001_20100000				2	242	3	4416	0.024550742	0.098202966	4
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
	3_8100001_8400000				3	241	10	4409	0.027396575	0.2191726	8
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
	2_300001_600000				3	241	10	4409	0.027396575	0.2191726	8
		RAFL06-09-M14	At2g01680 / ankyrin repeat protein family		At2g01680 ,RAFL06-09-M14 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023
		RAFL04-13-G03	At2g02130 / plant defensin protein, putative (PDF2.3)		At2g02130 ,RAFL04-13-G03 plant defensin-fusion protein, putative (PDF2.3) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be)
		RAFL05-08-E12	At2g02100 / plant defensin protein, putative (PDF2.2)		RAFL05-08-E12 ,At2g02100 plant defensin-fusion protein, putative (PDF2.2) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT:O65740
	5_23700001_24000000				3	241	10	4409	0.027396575	0.19177602	7
		RAFL04-10-F11	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL04-10-F11 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL07-08-L21	At5g59850 / 40S ribosomal protein S15A (RPS15aF)		At5g59850 ,RAFL07-08-L21 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL:ATAF1412
		RAFL04-16-B10	At5g59540 / oxidoreductase, 2OG-Fe(II) oxygenase family		RAFL04-16-B10 ,At5g59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to desacetoxyvindoline-4-hydroxylase [Catharanthus roseus] GI:2352812; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
	3_18000001_21000000				15	229	152	4267	0.033300914	0.9657265	29
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL06-09-H09	At3g48930 / 40S ribosomal protein S11 (RPS11A)		At3g48930 ,RAFL06-09-H09 40S ribosomal protein S11 (RPS11A)
		RAFL06-12-N06	At3g53580 / diaminopimelate epimerase - like protein		At3g53580 ,RAFL06-12-N06 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase
		RAFL02-02-A04	At3g54890 / light-harvesting chlorophyll a/b binding protein		At3g54890 ,RAFL02-02-A04 chlorophyll A-B binding protein / LHCI type I (CAB) identical to chlorophyll A/B-binding protein [Arabidopsis thaliana] GI:16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL05-20-D01	At3g51510 / expressed protein		RAFL05-20-D01 ,At3g51510 expressed protein
		RAFL05-01-G23	At3g49600 / ubiquitin-specific protease 26 (UBP26)		At3g49600 ,RAFL05-01-G23 ubiquitin-specific protease 26 (UBP26) similar to GI:11993492; RNA binding protein - Homo sapiens, EMBL:AB016089 (N-terminus), several ubiquitin carboxyl-terminal hydrolases from aa pos. 712
		RAFL11-05-B21	At3g54210 / ribosomal protein L17 -related protein		At3g54210 ,RAFL11-05-B21 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL07-10-A20	At3g54010 / peptidylprolyl isomerase (pasticcino 1)		RAFL07-10-A20 ,At3g54010 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI:3080740
		RAFL06-08-E09	At3g54640 / tryptophan synthase, alpha subunit (TSA1)		RAFL06-08-E09 ,At3g54640 tryptophan synthase, alpha subunit (TSA1) identical to gi:619753
		RAFL04-14-L08	At3g49010 / 60S ribosomal protein L13 (RPL13B)/breast basic conserved protein 1-related (BBC1)		At3g49010 ,RAFL04-14-L08 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1)
		RAFL04-10-H14	At3g49910 / 60S ribosomal protein L26 (RPL26A)		At3g49910 ,RAFL04-10-H14 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
		RAFL11-09-J03	At3g54210 / ribosomal protein L17 -related protein		RAFL11-09-J03 ,At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17
		RAFL05-17-L17	At3g55280 / 60S ribosomal protein L23A (RPL23aB)		RAFL05-17-L17 ,At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
		RAFL05-03-L01	At3g56340 / 40S ribosomal protein S26 homolog		At3g56340 ,RAFL05-03-L01 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26
	5_7800001_8100000				3	241	11	4408	0.033551577	0.3019642	9
		RAFL09-15-M15	At5g23740 / 40S ribosomal protein S11 (RPS11C)		RAFL09-15-M15 ,At5g23740 40S ribosomal protein S11 (RPS11C)
		RAFL05-16-O05	At5g23820 / expressed protein		At5g23820 ,RAFL05-16-O05 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain
		RAFL08-16-E23	At5g23530 / expressed protein		RAFL08-16-E23 ,At5g23530 expressed protein contains similarity to PrMC3 [Pinus radiata] GI:5487873
	1_1200001_1500000				3	241	11	4408	0.033551577	0.3019642	9
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL05-18-P15 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
		RAFL11-10-E14	At1g05010 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) (ethylene-forming enzyme) (EFE)		At1g05010 ,RAFL11-10-E14 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1) Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		At1g04480 ,RAFL07-15-M07 60S ribosomal protein L23 (RPL23A) identical to GB:AAB80655
	5_630001_660000				2	242	4	4415	0.0355681	0.1422724	4
		RAFL07-14-M14	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-M14 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL09-12-B05	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL09-12-B05 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
	1_8250001_8280000				2	242	4	4415	0.0355681	0.1422724	4
		RAFL09-16-K01	At1g23310 / alanine aminotransferase -related		RAFL09-16-K01 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL09-09-I19	At1g23310 / alanine aminotransferase -related		RAFL09-09-I19 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
	4_5400001_5700000				2	242	4	4415	0.0355681	0.1422724	4
		RAFL04-13-M20	At4g11010 / nucleoside diphosphate kinase 3 (ndpk3)		At4g11010 ,RAFL04-13-M20 nucleoside diphosphate kinase 3, mitochondrial (NDK3) identical to Nucleoside diphosphate kinase III, mitochondrial precursor (NDK III) (NDP kinase III) (NDPK III) (SP:O49203) [Arabidopsis thaliana]; contains Pfam PF00334 : Nucleoside diphosphate kinase domain;
		RAFL05-21-M05	At4g10480 / alpha NAC -related		At4g10480 ,RAFL05-21-M05 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
	2_8400001_8700000				3	241	12	4407	0.040360164	0.40360165	10
		RAFL04-09-E04	At2g19800 / expressed protein		RAFL04-09-E04 ,At2g19800 expressed protein similar to myo-inositol oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
		RAFL05-18-M20	At2g19730 / 60S ribosomal protein L28 (RPL28A)		At2g19730 ,RAFL05-18-M20 60S ribosomal protein L28 (RPL28A)
		RAFL05-20-L11	At2g20020 / expressed protein		At2g20020 ,RAFL05-20-L11 expressed protein
	3_9000001_9300000				3	241	12	4407	0.040360164	0.4439618	11
		RAFL04-20-J04	At3g25530 / gamma hydroxybutyrate dehydrogenase		At3g25530 ,RAFL04-20-J04 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|
		RAFL11-12-H04	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-12-H04 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
		RAFL11-07-B21	At3g25520 / 60S ribosomal protein L5 (RPL5A)		At3g25520 ,RAFL11-07-B21 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB:P49625 from [Oryza sativa]
	3_6000001_9000000				12	232	118	4301	0.0452302	1.2664456	28
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL04-13-D06	At3g23940 / dihydroxyacid dehydratase -related		RAFL04-13-D06 ,At3g23940 dehydratase family contains Pfam profile: PF00920 dehydratase family
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL06-16-M11	At3g18780 / actin 2		At3g18780 ,RAFL06-16-M11 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-21-D08	At3g18490 / chloroplast nucleoid DNA-binding protein -related		At3g18490 ,RAFL05-21-D08 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
		RAFL04-16-M03	At3g20790 / expressed protein		At3g20790 ,RAFL04-16-M03 oxidoreductase family protein weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
		RAFL07-12-K04	At3g20050 / T-complex protein 1, alpha subunit/chaperonin		RAFL07-12-K04 ,At3g20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
Cluster:2-0					A	B	C	D	P	P'	N
	1_22710001_22740000				6	144	1	4512	6.8456516E-9	1.3691303E-8	2
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	1_22500001_22800000				6	144	6	4507	7.901837E-7	4.741102E-6	6
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	5_300001_600000				4	146	5	4508	1.1431223E-4	6.858734E-4	6
		RAFL04-19-O24	At5g02610 / 60S ribosomal protein L35 (RPL35D)		RAFL04-19-O24 ,At5g02610 60S ribosomal protein L35 (RPL35D) ribosomal protein L35- cytosolic, Arabidopsis thaliana, PIR:T00549
		RAFL11-02-P21	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		RAFL11-02-P21 ,At5g02500 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
		RAFL04-17-D18	At5g02030 / homeodomain protein		At5g02030 ,RAFL04-17-D18 homeodomain protein (BELLRINGER) several homeodomain proteins;
		RAFL04-14-A06	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		At5g02500 ,RAFL04-14-A06 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
	1_2430001_2460000				4	146	5	4508	1.1431223E-4	4.572489E-4	4
		RAFL08-18-F01	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-18-F01 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL09-13-F11	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL09-13-F11 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL07-17-I21	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL07-17-I21 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL08-09-H17	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-09-H17 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
	1_24180001_24210000				3	147	1	4512	1.2749233E-4	2.5498465E-4	2
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
	1_21000001_24000000				10	140	77	4436	4.19244E-4	0.010900344	26
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-C02	At1g61520 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C02 ,At1g61520 chlorophyll A-B binding protein / LHCI type III (LHCA3.1) nearly identical to PSI type III chlorophyll a/b-binding protein GI:430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll a/b-binding protein GI:430947 from [Arabidopsis thaliana]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-17-B02	At1g59359 / 40S ribosomal protein S2 (RPS2B)		RAFL07-17-B02 ,At1g59359 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-13-D15	At1g65295 / expressed protein		RAFL08-13-D15 ,At1g65295 expressed protein
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	1_2400001_2700000				6	144	29	4484	7.5164216E-4	0.012026275	16
		RAFL08-18-F01	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-18-F01 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL05-02-L21	At1g07830 / ribosomal protein L29p family		At1g07830 ,RAFL05-02-L21 ribosomal protein L29 family protein similar to GB:CAA83057 from [Saccharomyces cerevisiae]
		RAFL03-08-O03	At1g07940 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-08-O03 ,At1g07940 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL09-13-F11	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL09-13-F11 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL07-17-I21	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL07-17-I21 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL08-09-H17	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-09-H17 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
	2_16350001_16380000				2	148	0	4513	0.0010281106	0.0010281106	1
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
	1_24660001_24690000				2	148	0	4513	0.0010281106	0.0010281106	1
		RAFL05-15-L20	At1g67030 / zinc finger protein (ZFP6)		At1g67030 ,RAFL05-15-L20 zinc finger (C2H2 type) family protein (ZFP6) identical to zinc finger protein, ZFP6 gi|790683|gb|AAA87302; contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL09-07-D23	At1g67050 / expressed protein		RAFL09-07-D23 ,At1g67050 expressed protein
	5_24000001_24300000				4	146	13	4500	0.0017651725	0.015886553	9
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-12-H19	At5g60640 / protein disulfide isomerase family		At5g60640 ,RAFL05-12-H19 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
	5_540001_570000				2	148	1	4512	0.003019041	0.006038082	2
		RAFL11-02-P21	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		RAFL11-02-P21 ,At5g02500 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
		RAFL04-14-A06	At5g02500 / heat shock protein hsc70-1 (hsp70-1) (hsc70.1)		At5g02500 ,RAFL04-14-A06 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}
	5_6390001_6420000				2	148	1	4512	0.003019041	0.006038082	2
		RAFL11-11-J05	At5g19120 / conglutin gamma - like protein		RAFL11-11-J05 ,At5g19120 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max}
		RAFL03-09-J09	At5g19120 / conglutin gamma - like protein		RAFL03-09-J09 ,At5g19120 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max}
	4_13710001_13740000				2	148	1	4512	0.003019041	0.006038082	2
		RAFL04-10-J05	At4g30170 / peroxidase, putative		RAFL04-10-J05 ,At4g30170 peroxidase, putative identical to peroxidase ATP8a [Arabidopsis thaliana] gi|1546706|emb|CAA67361
		RAFL07-09-N06	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,RAFL07-09-N06 ATPase 2, plasma membrane-type, putative / proton pump 2, putative / proton-exporting ATPase, putative strong similarity to SP|P19456 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
	2_11700001_11730000				2	148	2	4511	0.00591059	0.017731769	3
		RAFL09-09-C01	At2g27530 / 60S ribosomal protein L10A (RPL10aB)		RAFL09-09-C01 ,At2g27530 60S ribosomal protein L10A (RPL10aB)
		RAFL09-17-M14	At2g27530 / 60S ribosomal protein L10A (RPL10aB)		RAFL09-17-M14 ,At2g27530 60S ribosomal protein L10A (RPL10aB)
	3_5580001_5610000				2	148	2	4511	0.00591059	0.017731769	3
		RAFL04-15-D12	At3g16460 / jacalin lectin family		At3g16460 ,RAFL04-15-D12 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase binding protein [Brassica napus] GI:1711296, GI:1655824, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin family
		RAFL03-03-J03	At3g16450 / jacalin lectin family		At3g16450 ,RAFL03-03-J03 jacalin lectin family protein similar to SP|Q9SAV1 Myrosinase binding protein-like At1g52030 {Arabidopsis thaliana}; contains Pfam profile: PF01419 jacalin-like lectin domain
	1_10440001_10470000				2	148	2	4511	0.00591059	0.017731769	3
		RAFL07-10-G10	At1g29880 / glycyl tRNA synthetase -related		RAFL07-10-G10 ,At1g29880 glycyl-tRNA synthetase / glycine--tRNA ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis thaliana}
		RAFL09-12-G17	At1g29900 / carbamoylphosphate synthetase -related		RAFL09-12-G17 ,At1g29900 carbamoyl-phosphate synthase family protein similar to carbamoylphosphate synthetase GI:6552726 from [Medicago sativa]; contains Pfam profiles PF02786: Carbamoyl-phosphate synthase L chain ATP binding domain, PF00289: Carbamoyl-phosphate synthase L chain N-terminal domain, PF02787: Carbamoyl-phosphate synthetase large chain oligomerisation domain
	1_24000001_27000000				10	140	114	4399	0.0061895447	0.16092817	26
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL02-08-D12	At1g70850 / Bet v I allergen family		At1g70850 ,RAFL02-08-D12 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-09-P17	At1g72370 / 40S ribosomal protein SA (RPSaA)		RAFL09-09-P17 ,At1g72370 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL05-15-E14	At1g70600 / 60S ribosomal protein L27A (RPL27aC)		At1g70600 ,RAFL05-15-E14 60S ribosomal protein L27A (RPL27aC) identical to 60S ribosomal protein L27A GB:P49637 [Arabidopsis thaliana]
		RAFL05-15-L20	At1g67030 / zinc finger protein (ZFP6)		At1g67030 ,RAFL05-15-L20 zinc finger (C2H2 type) family protein (ZFP6) identical to zinc finger protein, ZFP6 gi|790683|gb|AAA87302; contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL03-06-E12	At1g66270 / glycosyl hydrolase family 1, beta-glucosidase		RAFL03-06-E12 ,At1g66270 beta-glucosidase (PSR3.2) nearly identical to GI:2286069 from (Arabidopsis thaliana) (Plant Mol. Biol. 34 (1), 57-68 (1997)); similar to thioglucoside glucohydrolase (GI:984052) [Arabidopsis thaliana]
		RAFL09-07-D23	At1g67050 / expressed protein		RAFL09-07-D23 ,At1g67050 expressed protein
		RAFL05-12-K17	At1g67430 / 60S ribosomal protein L17 (RPL17B)		RAFL05-12-K17 ,At1g67430 60S ribosomal protein L17 (RPL17B) similar to ribosomal protein GI:19101 from [Hordeum vulgare]
	1_24000001_24300000				3	147	11	4502	0.009149455	0.0823451	9
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
	2_15570001_15600000				2	148	3	4510	0.009643516	0.038574062	4
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
	5_6780001_6810000				2	148	3	4510	0.009643516	0.028930547	3
		RAFL05-15-M21	At5g20160 / ribosomal protein L7Ae family		At5g20160 ,RAFL05-15-M21 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
		RAFL06-16-O09	At5g20150 / ids4-related protein		RAFL06-16-O09 ,At5g20150 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profile PF03105: SPX domain
	2_16200001_16500000				3	147	13	4500	0.013429119	0.16114943	12
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL06-07-L23	At2g39670 / expressed protein		RAFL06-07-L23 ,At2g39670 radical SAM domain-containing protein similar to hypothetical protein PIR|S76698|S76698 contains Pfam profile PF04055: radical SAM domain protein
	5_630001_660000				2	148	4	4509	0.014161414	0.056645654	4
		RAFL07-14-H10	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-H10 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL11-13-A04	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL11-13-A04 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
	2_15300001_15600000				3	147	14	4499	0.015928537	0.20707098	13
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL06-08-J02	At2g37130 / peroxidase, putative (ATP2a)		RAFL06-08-J02 ,At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) identical to SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
	5_25410001_25440000				2	148	5	4508	0.019410595	0.11646357	6
		RAFL07-09-K24	At5g64300 / GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase (emb|CAA03884.1)		At5g64300 ,RAFL07-09-K24 riboflavin biosynthesis protein, putative (RIBA) similar to SP|P47924 {Arabidopsis thaliana}, SP|P51695 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Bacillus amyloliquefaciens}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase
		RAFL07-09-O18	At5g64290 / oxoglutarate/malate translocator, putative		At5g64290 ,RAFL07-09-O18 oxoglutarate/malate translocator, putative similar to SWISS-PROT:Q41364 2-oxoglutarate/malate translocator, chloroplast precursor. [Spinach]{Spinacia oleracea}
	5_24000001_24030000				2	148	5	4508	0.019410595	0.09705298	5
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
	5_9300001_9600000				2	148	6	4507	0.025339978	0.12669988	5
		RAFL07-12-J16	At5g27120 / SAR DNA-binding protein, putative		At5g27120 ,RAFL07-12-J16 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain
		RAFL06-11-M20	At5g26880 / expressed protein		At5g26880 ,RAFL06-11-M20 tRNA/rRNA methyltransferase (SpoU) family protein low similarity to tRNA (Gm18) methyltransferase [Thermus thermophilus] GI:11079208; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family
	2_15000001_18000000				10	140	139	4374	0.027998626	0.89595604	32
		RAFL05-07-F16	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL05-07-F16 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
		RAFL09-07-E24	At2g36530 / enolase (2-phospho-D-glycerate hydroylase)		At2g36530 ,RAFL09-07-E24 enolase identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) [Arabidopsis thaliana]
		RAFL09-14-H22	At2g38170 / calcium exchanger (CAX1)		At2g38170 ,RAFL09-14-H22 calcium exchanger (CAX1) identical to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563
		RAFL09-10-G17	At2g39310 / jacalin lectin family		RAFL09-10-G17 ,At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL05-21-H13	At2g42190 / expressed protein		RAFL05-21-H13 ,At2g42190 expressed protein ; similar to GP|9826|X07453
		RAFL06-15-I18	At2g40590 / 40S ribosomal protein S26 (RPS26B)		RAFL06-15-I18 ,At2g40590 40S ribosomal protein S26 (RPS26B)
		RAFL11-09-G01	At2g39310 / jacalin lectin family		At2g39310 ,RAFL11-09-G01 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain
		RAFL06-07-L23	At2g39670 / expressed protein		RAFL06-07-L23 ,At2g39670 radical SAM domain-containing protein similar to hypothetical protein PIR|S76698|S76698 contains Pfam profile PF04055: radical SAM domain protein
		RAFL06-08-J02	At2g37130 / peroxidase, putative (ATP2a)		RAFL06-08-J02 ,At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) identical to SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana}
		RAFL08-10-G10	At2g37220 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative		RAFL08-10-G10 ,At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana}
	4_16350001_16380000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-17-E16	At4g36920 / floral homeotic protein APETALA2		At4g36920 ,RAFL04-17-E16 floral homeotic protein APETALA2 (AP2) Identical to (SP:P47927) Floral homeotic protein APETALA2. [Mouse-ear cress] {Arabidopsis thaliana}
	5_570001_600000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-19-O24	At5g02610 / 60S ribosomal protein L35 (RPL35D)		RAFL04-19-O24 ,At5g02610 60S ribosomal protein L35 (RPL35D) ribosomal protein L35- cytosolic, Arabidopsis thaliana, PIR:T00549
	1_17520001_17550000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-08-N14	At1g48570 / expressed protein		RAFL06-08-N14 ,At1g48570 zinc finger (Ran-binding) family protein contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others
	1_18690001_18720000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-02-C01	At1g51570 / C2 domain-containing protein		At1g51570 ,RAFL03-02-C01 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain
	5_24030001_24060000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
	3_8520001_8550000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL07-18-A18	At3g23700 / expressed protein		At3g23700 ,RAFL07-18-A18 S1 RNA-binding domain-containing protein contains Pfam domain, PF00575: S1 RNA binding domain
	1_23250001_23280000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
	5_17490001_17520000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-15-L02	At5g44190 / myb family transcription factor		At5g44190 ,RAFL05-15-L02 myb family transcription factor (GLK2) contains Pfam profile: PF00249 myb-like DNA-binding domain
	5_8070001_8100000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-20-B22	At5g24020 / septum site-determining MinD (dbj|BAA90261.1)		RAFL04-20-B22 ,At5g24020 septum site-determining protein (MIND) identical to MinD [Arabidopsis thaliana] GI:6759277; contains Pfam PF00991 : ParA family ATPase
	1_2460001_2490000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-08-O03	At1g07940 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-08-O03 ,At1g07940 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
	5_15930001_15960000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-13-A19	At5g40510 / sucrose cleavage protein -related		RAFL06-13-A19 ,At5g40510 expressed protein
	3_1200001_1230000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-08-P15	At3g04550 / expressed protein		RAFL05-08-P15 ,At3g04550 expressed protein
	1_24900001_24930000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-12-K17	At1g67430 / 60S ribosomal protein L17 (RPL17B)		RAFL05-12-K17 ,At1g67430 60S ribosomal protein L17 (RPL17B) similar to ribosomal protein GI:19101 from [Hordeum vulgare]
	3_23430001_23460000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-08-N09	At3g63490 / ribosomal protein L1p family		RAFL06-08-N09 ,At3g63490 ribosomal protein L1 family protein ribosomal protein L1, S.oleracea, EMBL:SORPL1
	3_5310001_5340000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-17-F06	At3g15690 / acetyl-CoA carboxylase biotin-containing subunit -related		At3g15690 ,RAFL04-17-F06 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related contains weak similarity to Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplast precursor (BCCP) (Swiss-Prot:Q42533) [Arabidopsis thaliana]
	2_270001_300000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-10-E23	At2g01660 / expressed protein		At2g01660 ,RAFL06-10-E23 33 kDa secretory protein-related contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins
	3_17160001_17190000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-09-N12	At3g46600 / scarecrow transcription factor family		At3g46600 ,RAFL06-09-N12 scarecrow transcription factor family protein scarecrow-like 11 - Arabidopsis thaliana, EMBL:AF036307
	4_1080001_1110000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-05-I07	At4g02520 / glutathione transferase, putative		At4g02520 ,RAFL03-05-I07 glutathione S-transferase, putative
	5_9480001_9510000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL07-12-J16	At5g27120 / SAR DNA-binding protein, putative		At5g27120 ,RAFL07-12-J16 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain
	1_13140001_13170000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-18-B15	At1g35620 / protein disulfide isomerase family		RAFL04-18-B15 ,At1g35620 thioredoxin family protein similar to SP|Q43116 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Ricinus communis}; contains Pfam profile PF00085: Thioredoxin
	4_12390001_12420000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-13-H13	At4g26670 / expressed protein		RAFL06-13-H13 ,At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|Q9Z0V8 Mitochondrial import inner membrane translocase subunit TIM17 A {Mus musculus}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17
	1_19050001_19080000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-10-I16	At1g52300 / 60S ribosomal protein L37 (RPL37B)		RAFL04-10-I16 ,At1g52300 60S ribosomal protein L37 (RPL37B) similar to SP:Q43292 from [Arabidopsis thaliana]
	5_7620001_7650000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL08-09-P06	At5g22920 / PGPD14 protein		RAFL08-09-P06 ,At5g22920 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles:PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 type (RING finger)
	4_10140001_10170000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL04-19-F02	At4g20890 / tubulin beta-9 chain (TUB9)		RAFL04-19-F02 ,At4g20890 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana}
	1_8280001_8310000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL05-10-O23	At1g23390 / Kelch repeat containing F-box protein family		At1g23390 ,RAFL05-10-O23 kelch repeat-containing F-box family protein similar to hypothetical protein GB:AAF27090 GI:6730669 from (Arabidopsis thaliana); contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
	2_15930001_15960000				1	149	0	4513	0.03216813	0.03216813	1
		RAFL09-14-H22	At2g38170 / calcium exchanger (CAX1)		At2g38170 ,RAFL09-14-H22 calcium exchanger (CAX1) identical to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563
	5_24000001_27000000				10	140	151	4362	0.038271654	1.1481496	30
		RAFL09-15-C19	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-15-C19 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-12-H19	At5g60640 / protein disulfide isomerase family		At5g60640 ,RAFL05-12-H19 thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-16-E22	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL05-16-E22 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL05-02-F20	At5g65360 / histone H3		RAFL05-02-F20 ,At5g65360 histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
		RAFL07-09-K24	At5g64300 / GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase (emb|CAA03884.1)		At5g64300 ,RAFL07-09-K24 riboflavin biosynthesis protein, putative (RIBA) similar to SP|P47924 {Arabidopsis thaliana}, SP|P51695 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Bacillus amyloliquefaciens}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase
		RAFL09-06-E02	At5g61790 / calnexin 1 (CNX1)		At5g61790 ,RAFL09-06-E02 calnexin 1 (CNX1) identical to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]
		RAFL11-04-C09	At5g66690 / UDP-glycosyltransferase family		At5g66690 ,RAFL11-04-C09 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-05-B16	At5g63890 / histidinol dehydrogenase		RAFL05-05-B16 ,At5g63890 histidinol dehydrogenase, putative / HDH, putative strong similarity to SP|P24226 Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) {Brassica oleracea var.capitata}; contains Pfam profile PF00815: histidinol dehydrogenase
		RAFL07-09-O18	At5g64290 / oxoglutarate/malate translocator, putative		At5g64290 ,RAFL07-09-O18 oxoglutarate/malate translocator, putative similar to SWISS-PROT:Q41364 2-oxoglutarate/malate translocator, chloroplast precursor. [Spinach]{Spinacia oleracea}
	4_13500001_13800000				2	148	8	4505	0.039047353	0.31237882	8
		RAFL04-10-J05	At4g30170 / peroxidase, putative		RAFL04-10-J05 ,At4g30170 peroxidase, putative identical to peroxidase ATP8a [Arabidopsis thaliana] gi|1546706|emb|CAA67361
		RAFL07-09-N06	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,RAFL07-09-N06 ATPase 2, plasma membrane-type, putative / proton pump 2, putative / proton-exporting ATPase, putative strong similarity to SP|P19456 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
Cluster:1-0					A	B	C	D	P	P'	N
	1_26160001_26190000				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL09-10-F09	At1g70370 / aromatic rich glyco protein -related		At1g70370 ,RAFL09-10-F09 BURP domain-containing protein / polygalacturonase, putative similar to polygalacturonase isoenzyme 1 beta subunit [Lycopersicon esculentum] GI:170480; contains Pfam profile PF03181: BURP domain
		RAFL04-13-K08	At1g70410 / carbonic anhydrase -related		RAFL04-13-K08 ,At1g70410 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase
	4_7500001_7530000				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
	1_19740001_19770000				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL05-16-I04	At1g54000 / myrosinase-associated protein, putative		At1g54000 ,RAFL05-16-I04 myrosinase-associated protein, putative similar to myrosinase-associated proteins GI:1769968, GI:1769970, GI:1216391, GI:1216389 from [Brassica napus]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; contains 1 predicted transmembrane domain
		RAFL08-17-C21	At1g54010 / myrosinase-associated protein, putative		At1g54010 ,RAFL08-17-C21 myrosinase-associated protein, putative similar to myrosinase-associated protein GI:1769969 from [Brassica napus]; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif
	3_5940001_5970000				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
	4_8700001_9000000				4	145	12	4502	0.0013500572	0.016200686	12
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
	5_17400001_17700000				3	146	6	4508	0.0023312767	0.01398766	6
		RAFL04-15-D02	At5g44020 / vegetative storage protein-related		At5g44020 ,RAFL04-15-D02 acid phosphatase class B family protein similar to SP|P15490 STEM 28 kDa glycoprotein precursor (Vegetative storage protein A) {Glycine max}, acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL05-21-P22	At5g44580 / expressed protein		At5g44580 ,RAFL05-21-P22 expressed protein
		RAFL04-16-G05	At5g44340 / tubulin beta-4 chain (TUB4)		At5g44340 ,RAFL04-16-G05 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana}
	1_29670001_29700000				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL06-16-K01	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL06-16-K01 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
		RAFL04-19-L23	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL04-19-L23 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
	1_23550001_23580000				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL07-09-J02	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-09-J02 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL07-18-L09	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-18-L09 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
	4_8760001_8790000				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
	3_4800001_4830000				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
	1_18930001_18960000				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL08-09-I24	At1g52040 / jacalin lectin family		RAFL08-09-I24 ,At1g52040 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
		RAFL09-14-K04	At1g52040 / jacalin lectin family		At1g52040 ,RAFL09-14-K04 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
	4_6000001_9000000				9	140	86	4428	0.0030741743	0.079928525	26
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL05-17-O20	At4g12030 / bile acid:sodium symporter family		RAFL05-17-O20 ,At4g12030 bile acid:sodium symporter family protein low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family
		RAFL04-17-B18	At4g13840 / transferase family		RAFL04-17-B18 ,At4g13840 transferase family protein low similarity to acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna] GI:6166328; contains Pfam profile PF02458: Transferase family
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL11-07-D18	At4g16370 / isp4 like protein		At4g16370 ,RAFL11-07-D18 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	3_19620001_19650000				2	147	2	4512	0.0058334814	0.017500445	3
		RAFL07-10-A19	At3g52960 / peroxiredoxin - like protein		RAFL07-10-A19 ,At3g52960 peroxiredoxin type 2, putative similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL05-13-O17	At3g52960 / peroxiredoxin - like protein		RAFL05-13-O17 ,At3g52960 peroxiredoxin type 2, putative similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
	3_3000001_6000000				13	136	172	4342	0.007977094	0.255267	32
		RAFL06-08-E07	At3g11630 / 2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein) -related		At3g11630 ,RAFL06-08-E07 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL09-11-D17	At3g12780 / phosphoglycerate kinase -related		RAFL09-11-D17 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL06-16-H23	At3g15030 / TCP family transcription factor, putative		At3g15030 ,RAFL06-16-H23 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-01-K06	At3g11170 / omega-3 fatty acid desaturase, chloroplast precursor (FAD7)		RAFL05-01-K06 ,At3g11170 omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD) identical to omega-3 fatty acid desaturase, chloroplast precursor SP:P46310 [Arabidopsis thaliana (Mouse-ear cress)]; identical to Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI:809491
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL08-11-A20	At3g15850 / fatty acid desaturase family protein		RAFL08-11-A20 ,At3g15850 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana]
		RAFL09-09-J21	At3g11700 / expressed protein		RAFL09-09-J21 ,At3g11700 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein contains Pfam profile PF02469: Fasciclin domain
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-04-C24	At3g13120 / chloroplast 30S ribosomal protein S10, putative		At3g13120 ,RAFL05-04-C24 30S ribosomal protein S10, chloroplast, putative similar to 30S ribosomal protein S10 GB:P02364 [Escherichia coli] (est matches suggest the N-terminal extension)
		RAFL04-09-O21	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-09-O21 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
		RAFL04-20-A09	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-20-A09 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
	1_23400001_23700000				3	146	11	4503	0.008982478	0.06287734	7
		RAFL07-09-J02	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-09-J02 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL07-18-L09	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL07-18-L09 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
		RAFL06-08-F10	At1g64510 / plastid ribosomal protein S6 -related		At1g64510 ,RAFL06-08-F10 ribosomal protein S6 family protein similar to plastid ribosomal protein S6 precursor GB:AAF64311 GI:7582401 from [Spinacia oleracea]
	4_7500001_7800000				2	147	3	4511	0.009519084	0.028557254	3
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
	3_4800001_5100000				3	146	12	4502	0.010968564	0.13162278	12
		RAFL06-16-H23	At3g15030 / TCP family transcription factor, putative		At3g15030 ,RAFL06-16-H23 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
	5_2970001_3000000				2	147	4	4510	0.013980698	0.05592279	4
		RAFL05-03-H12	At5g09660 / malate dehydrogenase, glyoxysomal		RAFL05-03-H12 ,At5g09660 malate dehydrogenase, glyoxysomal identical to SP|Q9ZP05; identical to cDNA microbody NAD-dependent malate dehydrogenase GI:3929650
		RAFL05-19-F17	At5g09650 / inorganic pyrophosphatase - like protein		At5g09650 ,RAFL05-19-F17 inorganic pyrophosphatase family protein similar to SP|Q15181 Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate {Homo sapiens}; contains Pfam profile PF00719: inorganic pyrophosphatase
	4_1_3000000				7	142	74	4440	0.014235923	0.34166214	24
		RAFL05-01-O08	At4g01150 / expressed protein		RAFL05-01-O08 ,At4g01150 expressed protein
		RAFL05-02-L04	At4g02530 / chloroplast thylakoid lumen protein		RAFL05-02-L04 ,At4g02530 chloroplast thylakoid lumen protein SP:022773 ;TL16_ARATH
		RAFL05-08-K07	At4g01310 / ribosomal protein L5p family		RAFL05-08-K07 ,At4g01310 ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5
		RAFL07-17-I11	At4g02290 / glycosyl hydrolase family 9		RAFL07-17-I11 ,At4g02290 glycosyl hydrolase family 9 protein similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891 from [Arabidopsis thaliana]
		RAFL06-16-A22	At4g05180 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL06-16-A22 ,At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
		RAFL07-07-D15	At4g04940 / transducin / WD-40 repeat protein family		At4g04940 ,RAFL07-07-D15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats
		RAFL09-14-J06	At4g04460 / aspartic protease -related		RAFL09-14-J06 ,At4g04460 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
	4_4590001_4620000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-18-H22	At4g08870 / arginase -related		At4g08870 ,RAFL05-18-H22 arginase, putative similar to Swiss-Prot:P46637 arginase (EC 3.5.3.1) [Arabidopsis thaliana]
	4_2220001_2250000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-14-J06	At4g04460 / aspartic protease -related		RAFL09-14-J06 ,At4g04460 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
	3_18420001_18450000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-09-J08	At3g49720 / expressed protein		RAFL06-09-J08 ,At3g49720 expressed protein
	1_1740001_1770000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-D04	At1g05850 / glycosyl hydrolase family 19 (chitinase)		At1g05850 ,RAFL04-15-D04 chitinase-like protein 1 (CTL1) similar to class I chitinase GI:7798656 from [Halimolobos perplexa var. perplexa]; contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328
	3_18630001_18660000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-19-J20	At3g50270 / hydroxycinnamoyl/benzoyltransferase-related		At3g50270 ,RAFL04-19-J20 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi:2239091]; contains Pfam transferase family domain PF002458
	1_29340001_29370000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-08-D11	At1g78970 / lupeol synthase (LUP1)		At1g78970 ,RAFL08-08-D11 lupeol synthase (LUP1) / 2,3-oxidosqualene-triterpenoid cyclase identical to lupeol synthase GI:1762150 from [Arabidopsis thaliana], 2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis thaliana] GI:2738027; contains Pfam profile PF00432: Prenyltransferase and squalene oxidase repeat; contains TIGRfam profile TIGR01787: squalene/oxidosqualene cyclases; identical to cDNA 2,3-oxidosqualene-triterpenoid cyclase GI:2738026
	3_6510001_6540000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-18-I11	At3g18890 / expressed protein		RAFL08-18-I11 ,At3g18890 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364
	1_6930001_6960000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-11-P11	At1g20010 / tubulin beta-5 chain (TUB5)		RAFL09-11-P11 ,At1g20010 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana}
	1_17430001_17460000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-11-A01	At1g48350 / ribosomal protein L18p family		At1g48350 ,RAFL06-11-A01 ribosomal protein L18 family protein similar to ribosomal protein L18 GI:3980238 from [Thermotoga maritima]
	2_14220001_14250000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-14-L19	At2g33800 / ribosomal protein S5 family		At2g33800 ,RAFL07-14-L19 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain
	5_13890001_13920000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-10-D06	At5g36120 / expressed protein		At5g36120 ,RAFL06-10-D06 YGGT family protein contains Pfam profile PF02325: YGGT family (unknown function)
	1_6660001_6690000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-03-E11	At1g19350 / expressed protein		At1g19350 ,RAFL05-03-E11 brassinosteroid signalling positive regulator, putative similar to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490
	5_17700001_17730000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-11-I01	At5g44650 / expressed protein		At5g44650 ,RAFL06-11-I01 expressed protein
	4_10590001_10620000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-16-O12	At4g21960 / peroxidase, putative		RAFL04-16-O12 ,At4g21960 peroxidase 42 (PER42) (P42) (PRXR1) identical to SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana}
	3_2190001_2220000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-19-N09	At3g07010 / polysaccharide lyase family 1 (pectate lyase)		At3g07010 ,RAFL04-19-N09 pectate lyase family protein similar to pectate lyase GP:14531296 from [Fragaria x ananassa]
	1_16230001_16260000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-08-A22	At1g44000 / expressed protein		At1g44000 ,RAFL07-08-A22 expressed protein
	2_11850001_11880000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-07-L14	At2g28000 / RuBisCO subunit binding-protein alpha subunit/60 kDa chaperonin alpha subunit		At2g28000 ,RAFL06-07-L14 RuBisCO subunit binding-protein alpha subunit, chloroplast / 60 kDa chaperonin alpha subunit / CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) [Arabidopsis thaliana]
	5_1590001_1620000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-12-G11	At5g05370 / ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C)-related protein (gb|AAF19563.1)		At5g05370 ,RAFL07-12-G11 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative strong similarity to SP|P46269 Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C (EC 1.10.2.2) (Ubiquinol-cytochrome C reductase complex 8.2 kDa protein) {Solanum tuberosum}
	1_27210001_27240000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-09-D01	At1g73330 / Dr4(protease inhibitor)		RAFL05-09-D01 ,At1g73330 protease inhibitor, putative (DR4) identical to Dr4 GI:469114 from [Arabidopsis thaliana]; contains Pfam profile PF00197: Trypsin and protease inhibitor
	1_22860001_22890000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-E16	At1g62750 / elongation factor Tu family protein		RAFL04-15-E16 ,At1g62750 elongation factor Tu family protein similar to elongation factor G SP:P34811 [Glycine max (Soybean)]
	1_24630001_24660000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-12-I20	At1g66970 / expressed protein		At1g66970 ,RAFL06-12-I20 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009 : Glycerophosphoryl diester phosphodiesterase family
	5_20640001_20670000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-09-D20	At5g51550 / expressed protein		RAFL09-09-D20 ,At5g51550 phosphate-responsive 1 family protein similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region
	2_9990001_10020000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-12-L06	At2g23600 / hydrolase, alpha/beta fold family		At2g23600 ,RAFL09-12-L06 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	3_9480001_9510000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-H06	At3g25920 / 50S ribosomal protein L15, chloroplast precursor (CL15)		At3g25920 ,RAFL04-15-H06 50S ribosomal protein L15, chloroplast (CL15) identical to GB:P25873 from [Arabidopsis thaliana]
	2_8820001_8850000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-08-L08	At2g20610 / aminotransferase, putative		At2g20610 ,RAFL07-08-L08 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II
	5_6990001_7020000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-15-B17	At5g20720 / chloroplast Cpn21 protein		At5g20720 ,RAFL04-15-B17 20 kDa chaperonin, chloroplast (CPN21) (CHCPN10) (CPN20) identical to chloroplast 20 kDa chaperonin, chloroplast precursor (Protein Cpn21), chloroplast protein Cpn10, chloroplast chaperonin 10 (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana]; identical to cDNA chaperonin 20 GI:14587372
	5_14130001_14160000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-14-K21	At5g36700 / phosphoglycolate phosphatase, putative		At5g36700 ,RAFL06-14-K21 phosphoglycolate phosphatase, putative similar to phosphoglycolate phosphatase precursor [Chlamydomonas reinhardtii] GI:15982558; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
	3_22860001_22890000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-02-M09	At3g61820 / expressed protein		At3g61820 ,RAFL05-02-M09 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
	3_6870001_6900000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-14-L16	At3g19820 / cell elongation protein (DWARF1) (DIMINUTO) (DIM)		RAFL05-14-L16 ,At3g19820 cell elongation protein / DWARF1 / DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from [Arabidopsis thaliana]; contains Pfam FAD binding domain PF01565
	5_10410001_10440000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL08-12-K23	At5g28500 / expressed protein		At5g28500 ,RAFL08-12-K23 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp.
	4_2490001_2520000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL07-07-D15	At4g04940 / transducin / WD-40 repeat protein family		At4g04940 ,RAFL07-07-D15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats
	3_3660001_3690000				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-08-E07	At3g11630 / 2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein) -related		At3g11630 ,RAFL06-08-E07 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
	5_4800001_5100000				2	147	8	4506	0.038570926	0.3085674	8
		RAFL09-18-F02	At5g15230 / GASA4		At5g15230 ,RAFL09-18-F02 gibberellin-regulated protein 4 (GASA4) / gibberellin-responsive protein 4 identical to SP|P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana}
		RAFL02-06-N10	At5g14920 / expressed protein		RAFL02-06-N10 ,At5g14920 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein
	1_18900001_19200000				2	147	9	4505	0.04617144	0.32320008	7
		RAFL08-09-I24	At1g52040 / jacalin lectin family		RAFL08-09-I24 ,At1g52040 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
		RAFL09-14-K04	At1g52040 / jacalin lectin family		At1g52040 ,RAFL09-14-K04 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
	3_5550001_5580000				2	147	9	4505	0.04617144	0.32320008	7
		RAFL04-09-O21	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-09-O21 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
		RAFL04-20-A09	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-20-A09 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
	4_16800001_17100000				3	146	23	4491	0.048582267	0.6315695	13
		RAFL06-13-F04	At4g38160 / expressed protein		At4g38160 ,RAFL06-13-F04 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF
		RAFL06-11-A22	At4g38770 / proline-rich protein family		At4g38770 ,RAFL06-11-A22 proline-rich family protein (PRP4) similar to proline-rich protein [Arabidopsis thaliana] gi|6782442|gb|AAF28388; contains proline-rich extensin domains, INTERPRO:IPR002965
		RAFL07-14-E15	At4g38520 / protein phosphatase-2c -related		At4g38520 ,RAFL07-14-E15 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain;
Cluster:6-1					A	B	C	D	P	P'	N
	3_15870001_15900000				3	312	1	4347	0.0011607888	0.0023215776	2
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
	3_16920001_16950000				3	312	1	4347	0.0011607888	0.0023215776	2
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
	3_10770001_10800000				3	312	2	4346	0.00275674	0.00827022	3
		RAFL05-10-J16	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-10-J16 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL11-03-E07	At3g28715 / expressed protein		At3g28715 ,RAFL11-03-E07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL09-18-I07	At3g28715 / expressed protein		At3g28715 ,RAFL09-18-I07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
	1_29310001_29340000				3	312	2	4346	0.00275674	0.00827022	3
		RAFL09-07-B18	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-07-B18 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
		RAFL09-10-E02	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-10-E02 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
		RAFL09-07-E05	At1g78900 / ATPase 70 kDa subunit -related		RAFL09-07-E05 ,At1g78900 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana}
	5_15990001_16020000				2	313	0	4348	0.004549907	0.004549907	1
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
	3_3390001_3420000				2	313	0	4348	0.004549907	0.004549907	1
		RAFL11-01-J02	At3g10860 / ubiquinol-cytochrome C reductase complex ubiquinone-binding protein (QP-C) -related		RAFL11-01-J02 ,At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative similar to ubiquinol--cytochrome c reductase GI:633687 from [Solanum tuberosum]
		RAFL05-14-B03	At3g10920 / manganese superoxide dismutase (MSD1)		At3g10920 ,RAFL05-14-B03 superoxide dismutase [Mn], mitochondrial (SODA) / manganese superoxide dismutase (MSD1) identical to manganese superoxide dismutase [Arabidopsis thaliana] gi|3273751|gb|AAC24832
	1_21540001_21570000				2	313	0	4348	0.004549907	0.004549907	1
		RAFL08-10-K09	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-10-K09 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
		RAFL08-14-K24	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-14-K24 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
	3_4170001_4200000				2	313	0	4348	0.004549907	0.004549907	1
		RAFL07-09-H13	At3g13040 / expressed protein		At3g13040 ,RAFL07-09-H13 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL05-17-J10	At3g13040 / expressed protein		RAFL05-17-J10 ,At3g13040 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
	5_9720001_9750000				2	313	0	4348	0.004549907	0.004549907	1
		RAFL04-09-C14	At5g27640 / eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta / eIF3 p110 / eIF3b)		At5g27640 ,RAFL04-09-C14 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
		RAFL05-04-A18	At5g27670 / histone H2A, putative		RAFL05-04-A18 ,At5g27670 histone H2A, putative similar to histone H2A Lycopersicon esculentum SP|P25469, Pisum sativum SP|P25470, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
	3_16800001_17100000				4	311	7	4341	0.0046094977	0.027656987	6
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-10-H13	At3g46220 / expressed protein		RAFL05-10-H13 ,At3g46220 expressed protein
	5_4290001_4320000				3	312	3	4345	0.005238493	0.015715478	3
		RAFL07-09-C22	At5g13420 / transaldolase - like protein		RAFL07-09-C22 ,At5g13420 transaldolase, putative similar to transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
		RAFL05-11-L11	At5g13440 / ubiquinol--cytochrome c reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13440 ,RAFL05-11-L11 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
		RAFL02-02-L02	At5g13430 / ubiquinol--cytochrome C reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13430 ,RAFL02-02-L02 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]; non-consensus AT acceptor splice site at exon 2
	3_15600001_15900000				3	312	4	4344	0.008711721	0.043558605	5
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
	5_15900001_16200000				4	311	9	4339	0.008966274	0.080696456	9
		RAFL05-10-P24	At5g40890 / CLC-a chloride channel protein		At5g40890 ,RAFL05-10-P24 chloride channel protein (CLC-a) identical to GI:1742952 (gb|AAC05742.1)
		RAFL06-09-A21	At5g40580 / 20S proteasome beta subunit B (PBB2)		At5g40580 ,RAFL06-09-A21 20S proteasome beta subunit B (PBB2) (PRCFC) identical to 20S proteasome beta subunit PBB2 [Arabidopsis thaliana] GI:3421104, cDNA proteasome subunit prcfc GI:2511575
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
	2_18000001_18300000				5	310	15	4333	0.009084601	0.09084601	10
		RAFL09-13-A13	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL09-13-A13 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL05-11-L05	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL05-11-L05 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL09-18-M22	At2g43790 / mitogen-activated protein kinase (MAPK), putative (MPK6)		At2g43790 ,RAFL09-18-M22 mitogen-activated protein kinase, putative / MAPK, putative (MPK6) identical to mitogen-activated protein kinase homolog 6 (AtMPK6)[Arabidopsis thaliana] SWISS-PROT:Q39026; PMID:12119167
		RAFL05-05-A23	At2g43780 / expressed protein		RAFL05-05-A23 ,At2g43780 expressed protein
		RAFL04-17-O24	At2g44350 / citrate synthase		RAFL04-17-O24 ,At2g44350 citrate synthase, mitochondrial, putative strong similarity to SP|P20115 Citrate synthase, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF00285: Citrate synthase
	1_24000001_24300000				4	311	10	4338	0.011896291	0.10706662	9
		RAFL04-09-A20	At1g65720 / expressed protein		At1g65720 ,RAFL04-09-A20 expressed protein
		RAFL04-17-H05	At1g65650 / expressed protein		At1g65650 ,RAFL04-17-H05 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to 26S proteasome regulatory complex subunit p37A [Drosophila melanogaster] GI:6434962; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1
		RAFL04-20-K18	At1g65980 / type 2 peroxiredoxin -related		RAFL04-20-K18 ,At1g65980 peroxiredoxin type 2, putative strong similarity to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL02-10-H06	At1g65820 / microsomal glutathione s-transferase, putative		RAFL02-10-H06 ,At1g65820 microsomal glutathione s-transferase, putative similar to MGST3_HUMAN SP:O14880
	3_8700001_8730000				2	313	1	4347	0.013038642	0.026077284	2
		RAFL05-07-N19	At3g24100 / expressed protein		At3g24100 ,RAFL05-07-N19 four F5 family protein / 4F5 family protein contains Pfam PF04419: 4F5 protein family
		RAFL09-14-J17	At3g24160 / type 1 membrane protein -related		At3g24160 ,RAFL09-14-J17 expressed protein identical to cDNA putative type 1 membrane protein (PMP)GI:4206764
	3_6480001_6510000				2	313	1	4347	0.013038642	0.026077284	2
		RAFL06-16-B15	At3g18860 / transducin / WD-40 repeat protein family		At3g18860 ,RAFL06-16-B15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to phospholipase a-2-activating protein SP:P27612 from [Mus musculus]
		RAFL05-07-B02	At3g18820 / GTP-binding protein, putative		At3g18820 ,RAFL05-07-B02 Ras-related GTP-binding protein, putative similar to Ras-related protein RAB7 GI:1370186 from [Pisum sativum], Plant Mol. Biol. 21 (6), 1195-1199 (1993); contains Pfam profile: PF00071 Ras family
	3_4350001_4380000				2	313	1	4347	0.013038642	0.026077284	2
		RAFL05-05-P01	At3g13410 / expressed protein		At3g13410 ,RAFL05-05-P01 expressed protein
		RAFL05-10-K07	At3g13445 / transcription initiation factor TFIID-1 (TATA sequence-binding protein 1)		RAFL05-10-K07 ,At3g13445 transcription initiation factor IID-1 (TFIID-1) / TATA-box factor 1 / TATA sequence-binding protein 1 (TBP1) identical to Swiss-Prot:P28147 transcription initiation factor TFIID-1 (TATA-box factor 1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis thaliana]
	1_9600001_9900000				3	312	5	4343	0.013248402	0.07949041	6
		RAFL08-16-J16	At1g27970 / nuclear transport factor 2 -related		At1g27970 ,RAFL08-16-J16 nuclear transport factor 2 (NTF2), putative similar to Swiss-Prot:P33331 nuclear transport factor 2 (NTF-2) (Nuclear transport factor P10) [Saccharomyces cerevisiae]
		RAFL04-18-J23	At1g27900 / RNA helicase, putative		At1g27900 ,RAFL04-18-J23 RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL07-14-J21	At1g28140 / expressed protein		RAFL07-14-J21 ,At1g28140 expressed protein contains similarity to cytochrome oxidase I GI:1289267 from (Xantholinus sp.)
	5_15000001_18000000				14	301	93	4255	0.016745122	0.45211828	27
		RAFL05-10-P24	At5g40890 / CLC-a chloride channel protein		At5g40890 ,RAFL05-10-P24 chloride channel protein (CLC-a) identical to GI:1742952 (gb|AAC05742.1)
		RAFL05-14-B01	At5g42980 / thioredoxin H-type 3 (TRX-H-3)		RAFL05-14-B01 ,At5g42980 thioredoxin H-type 3 (TRX-H-3) (GIF1) identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3) {Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA for thioredoxin GI:992961
		RAFL09-06-P04	At5g39730 / avirulence induced gene (AIG) - like protein		At5g39730 ,RAFL09-06-P04 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana}
		RAFL05-14-O08	At5g39950 / thioredoxin H-type 2 (TRX-H-2)		At5g39950 ,RAFL05-14-O08 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI:992963
		RAFL04-20-N11	At5g41370 / TFIIH basal transcription factor complex helicase XPB subunit, putative		At5g41370 ,RAFL04-20-N11 DNA repair protein, putative / TFIIH basal transcription factor complex helicase XPB subunit, putative (XPB1) contains Pfam profile PF00271:Helicase conserved C-terminal domain; identical to cDNA putative DNA repair protein (XPB1) GI:10314019
		RAFL06-09-A21	At5g40580 / 20S proteasome beta subunit B (PBB2)		At5g40580 ,RAFL06-09-A21 20S proteasome beta subunit B (PBB2) (PRCFC) identical to 20S proteasome beta subunit PBB2 [Arabidopsis thaliana] GI:3421104, cDNA proteasome subunit prcfc GI:2511575
		RAFL07-12-M14	At5g42390 / pitrilysin		At5g42390 ,RAFL07-12-M14 metalloendopeptidase identical to chloroplast processing enzyme metalloendopeptidase [Arabidopsis thaliana] gi|2827039|gb|AAC39482
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL09-12-L08	At5g38470 / DNA repair protein RAD23, putative		RAFL09-12-L08 ,At5g38470 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform I GI:1914683 from [Daucus carota]
		RAFL06-12-E24	At5g42790 / 20S proteasome alpha subunit F1 (PAF1)		At5g42790 ,RAFL06-12-E24 20S proteasome alpha subunit F1 (PAF1) (gb|AAC32062.1)
		RAFL11-01-O04	At5g42520 / expressed protein		RAFL11-01-O04 ,At5g42520 expressed protein
		RAFL11-10-D22	At5g43280 / enoyl-CoA hydratase/isomerase family		RAFL11-10-D22 ,At5g43280 enoyl-CoA hydratase/isomerase family protein similar to Delta 3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial (ECH1) from Rattus norvegicus [SP|Q62651], from Homo sapiens [SP|Q13011]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
		RAFL04-13-C05	At5g43780 / ATP sulfurylase precursor (gb|AAD26634.1)		At5g43780 ,RAFL04-13-C05 sulfate adenylyltransferase 4 / ATP-sulfurylase 4 (APS4) identical to ATP sulfurylase precursor (APS4) [Arabidopsis thaliana] GI:4633131
	3_15000001_18000000				11	304	65	4283	0.016970566	0.4921464	29
		RAFL05-09-G20	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL05-09-G20 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL06-13-M23	At3g44110 / DnaJ protein AtJ3		RAFL06-13-M23 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL11-05-I03	At3g46060 / Ras family GTP-binding protein		At3g46060 ,RAFL11-05-I03 Ras-related protein (ARA-3) / small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family
		RAFL09-17-O15	At3g44110 / DnaJ protein AtJ3		RAFL09-17-O15 ,At3g44110 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL04-09-B22	At3g46030 / histone H2B, putative		RAFL04-09-B22 ,At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI:3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL08-08-D21	At3g44110 / DnaJ protein AtJ3		At3g44110 ,RAFL08-08-D21 DNAJ heat shock protein, putative (J3) identical to AtJ3 [Arabidopsis thaliana] GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL05-16-J07	At3g46460 / ubiquitin-conjugating enzyme 13 (UBC13)		RAFL05-16-J07 ,At3g46460 ubiquitin-conjugating enzyme 13 (UBC13) E2; identical to gi:992706
		RAFL05-17-B12	At3g47250 / expressed protein		At3g47250 ,RAFL05-17-B12 expressed protein contains Pfam profile PF03140: Plant protein of unknown function
		RAFL05-07-N16	At3g44330 / expressed protein		RAFL05-07-N16 ,At3g44330 expressed protein
		RAFL05-10-H13	At3g46220 / expressed protein		RAFL05-10-H13 ,At3g46220 expressed protein
		RAFL05-15-F17	At3g45310 / cysteine proteinase AALP, putative		At3g45310 ,RAFL05-15-F17 cysteine proteinase, putative similar to AALP protein GI:7230640 from [Arabidopsis thaliana] and barley aleurain
	3_10500001_10800000				3	312	6	4342	0.018891884	0.13224319	7
		RAFL05-10-J16	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-10-J16 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL11-03-E07	At3g28715 / expressed protein		At3g28715 ,RAFL11-03-E07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL09-18-I07	At3g28715 / expressed protein		At3g28715 ,RAFL09-18-I07 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
	1_5100001_5400000				4	311	13	4335	0.024095291	0.2650482	11
		RAFL09-09-G03	At1g15060 / expressed protein		At1g15060 ,RAFL09-09-G03 expressed protein
		RAFL04-12-M22	At1g15270 / expressed protein		At1g15270 ,RAFL04-12-M22 expressed protein ESTs gb|AA650895, gb|AA720043 and gb|R29777 come from this gene
		RAFL03-01-D10	At1g15670 / Kelch repeat containing F-box protein family		RAFL03-01-D10 ,At1g15670 kelch repeat-containing F-box family protein similar to SP|Q9ER30 Kelch-related protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain
		RAFL06-16-H04	At1g14890 / pectinesterase family		RAFL06-16-H04 ,At1g14890 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase GB:X85216 GI:732912 SP|Q43111 [Phaseolus vulgaris], SP|Q42534 from Arabidopsis thaliana; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor
	2_16500001_16800000				4	311	13	4335	0.024095291	0.31323877	13
		RAFL05-16-M24	At2g39950 / expressed protein		RAFL05-16-M24 ,At2g39950 expressed protein
		RAFL05-12-M22	At2g39760 / expressed protein		RAFL05-12-M22 ,At2g39760 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL06-11-M10	At2g40060 / expressed protein		RAFL06-11-M10 ,At2g40060 expressed protein
		RAFL11-05-B04	At2g39780 / S-like ribonuclease RNS2		RAFL11-05-B04 ,At2g39780 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459)
	1_2040001_2070000				2	313	2	4346	0.024916494	0.074749485	3
		RAFL04-15-I20	At1g06700 / serine/threonine protein kinase, putative		At1g06700 ,RAFL04-15-I20 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
		RAFL05-18-C05	At1g06690 / aldo/keto reductase family		At1g06690 ,RAFL05-18-C05 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
	2_18180001_18210000				2	313	2	4346	0.024916494	0.074749485	3
		RAFL09-13-A13	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL09-13-A13 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
		RAFL05-11-L05	At2g44100 / GDP dissociation inhibitor		At2g44100 ,RAFL05-11-L05 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI:1655424
	4_16290001_16320000				2	313	2	4346	0.024916494	0.074749485	3
		RAFL11-05-H14	At4g36800 / RUB1-conjugating enzyme RCE1, putative		At4g36800 ,RAFL11-05-H14 RUB1-conjugating enzyme, putative (RCE1) this gene is frameshifted and may be a pseudogene; identical over first 79 amino acids to RUB1 conjugating enzyme [Arabidopsis thaliana] GI:6635457
		RAFL05-14-L02	At4g36800 / RUB1-conjugating enzyme RCE1, putative		At4g36800 ,RAFL05-14-L02 RUB1-conjugating enzyme, putative (RCE1) this gene is frameshifted and may be a pseudogene; identical over first 79 amino acids to RUB1 conjugating enzyme [Arabidopsis thaliana] GI:6635457
	3_3750001_3780000				2	313	2	4346	0.024916494	0.04983299	2
		RAFL05-17-B11	At3g11930 / ethylene-responsive protein -related		At3g11930 ,RAFL05-17-B11 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
		RAFL02-07-E18	At3g11930 / ethylene-responsive protein -related		RAFL02-07-E18 ,At3g11930 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
	5_9600001_9900000				3	312	7	4341	0.025661359	0.20529087	8
		RAFL04-09-C14	At5g27640 / eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta / eIF3 p110 / eIF3b)		At5g27640 ,RAFL04-09-C14 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
		RAFL05-04-A18	At5g27670 / histone H2A, putative		RAFL05-04-A18 ,At5g27670 histone H2A, putative similar to histone H2A Lycopersicon esculentum SP|P25469, Pisum sativum SP|P25470, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL11-13-N18	At5g27720 / glycine rich protein - like		At5g27720 ,RAFL11-13-N18 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
	3_3600001_3900000				4	311	15	4333	0.035288595	0.38817453	11
		RAFL07-08-P17	At3g12010 / expressed protein		RAFL07-08-P17 ,At3g12010 expressed protein contains Prosite PS00626: Regulator of chromosome condensation (RCC1) signature 2
		RAFL09-10-I17	At3g11530 / expressed protein		At3g11530 ,RAFL09-10-I17 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55
		RAFL05-17-B11	At3g11930 / ethylene-responsive protein -related		At3g11930 ,RAFL05-17-B11 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
		RAFL02-07-E18	At3g11930 / ethylene-responsive protein -related		RAFL02-07-E18 ,At3g11930 universal stress protein (USP) family protein similar to ER6 protein GB:AAD46412 GI:5669654 from [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family
	5_4200001_4500000				4	311	15	4333	0.035288595	0.38817453	11
		RAFL07-09-C22	At5g13420 / transaldolase - like protein		RAFL07-09-C22 ,At5g13420 transaldolase, putative similar to transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
		RAFL05-11-L11	At5g13440 / ubiquinol--cytochrome c reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13440 ,RAFL05-11-L11 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
		RAFL05-09-D06	At5g13490 / mitochondrial ADP,ATP carrier protein 2		At5g13490 ,RAFL05-09-D06 ADP, ATP carrier protein 2, mitochondrial / ADP/ATP translocase 2 / adenine nucleotide translocator 2 (ANT2) identical to SWISS-PROT:P40941 ADP,ATP carrier protein 2, mitochondrial precursor (Adenine nucleotide translocator 2) [Arabidopsis thaliana]
		RAFL02-02-L02	At5g13430 / ubiquinol--cytochrome C reductase (cytochrome bc1 complex/complex III (mitochondrial electron transport)/ Rieske iron-sulfur protein), putative		At5g13430 ,RAFL02-02-L02 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]; non-consensus AT acceptor splice site at exon 2
	2_18060001_18090000				2	313	3	4345	0.039689664	0.15875866	4
		RAFL09-18-M22	At2g43790 / mitogen-activated protein kinase (MAPK), putative (MPK6)		At2g43790 ,RAFL09-18-M22 mitogen-activated protein kinase, putative / MAPK, putative (MPK6) identical to mitogen-activated protein kinase homolog 6 (AtMPK6)[Arabidopsis thaliana] SWISS-PROT:Q39026; PMID:12119167
		RAFL05-05-A23	At2g43780 / expressed protein		RAFL05-05-A23 ,At2g43780 expressed protein
	5_15600001_15900000				2	313	3	4345	0.039689664	0.15875866	4
		RAFL09-06-P04	At5g39730 / avirulence induced gene (AIG) - like protein		At5g39730 ,RAFL09-06-P04 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana}
		RAFL05-14-O08	At5g39950 / thioredoxin H-type 2 (TRX-H-2)		At5g39950 ,RAFL05-14-O08 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI:992963
	5_6570001_6600000				2	313	3	4345	0.039689664	0.15875866	4
		RAFL04-17-L05	At5g19550 / aspartate aminotransferase, cytoplasmic isozyme 1 (transaminase A/Asp2)		At5g19550 ,RAFL04-17-L05 aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2) identical to SP|P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
		RAFL11-09-A12	At5g19550 / aspartate aminotransferase, cytoplasmic isozyme 1 (transaminase A/Asp2)		RAFL11-09-A12 ,At5g19550 aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2) identical to SP|P46645 Aspartate aminotransferase, cytoplasmic isozyme 1 (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
	2_16530001_16560000				2	313	3	4345	0.039689664	0.15875866	4
		RAFL05-12-M22	At2g39760 / expressed protein		RAFL05-12-M22 ,At2g39760 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
		RAFL11-05-B04	At2g39780 / S-like ribonuclease RNS2		RAFL11-05-B04 ,At2g39780 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459)
	4_11730001_11760000				2	313	3	4345	0.039689664	0.11906899	3
		RAFL05-08-I15	At4g24820 / 26S proteasome regulatory subunit (RPN7), putative		At4g24820 ,RAFL05-08-I15 26S proteasome regulatory subunit, putative (RPN7) contains similarity to ubiquitin activating enzyme GI:3647283 from [Lycopersicon esculentum]
		RAFL07-13-D20	At4g24820 / 26S proteasome regulatory subunit (RPN7), putative		RAFL07-13-D20 ,At4g24820 26S proteasome regulatory subunit, putative (RPN7) contains similarity to ubiquitin activating enzyme GI:3647283 from [Lycopersicon esculentum]
	1_21300001_21600000				2	313	3	4345	0.039689664	0.15875866	4
		RAFL08-10-K09	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-10-K09 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
		RAFL08-14-K24	At1g59610 / dynamin-related protein		At1g59610 ,RAFL08-14-K24 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835
	1_4800001_5100000				3	312	9	4339	0.042557452	0.38301706	9
		RAFL11-07-B22	At1g14650 / splicing factor -related		At1g14650 ,RAFL11-07-B22 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein similar to SP|Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module
		RAFL11-06-C12	At1g14570 / expressed protein		At1g14570 ,RAFL11-06-C12 UBX domain-containing protein contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif
		RAFL05-03-P12	At1g14720 / xyloglucan endotransglycosylase (XTR2)		RAFL05-03-P12 ,At1g14720 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR2) identical to endoxyloglucan transferase [Arabidopsis thaliana] GI:5533311
Cluster:7-0					A	B	C	D	P	P'	N
	5_750001_780000				4	243	1	4415	3.685913E-5	7.371826E-5	2
		RAFL05-18-L21	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-18-L21 polyubiquitin (UBQ3) identical to GI:928809
		RAFL06-08-I12	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL06-08-I12 polyubiquitin (UBQ3) identical to GI:928809
		RAFL04-14-D12	At5g03230 / expressed protein		At5g03230 ,RAFL04-14-D12 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584
		RAFL05-21-L02	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-21-L02 polyubiquitin (UBQ3) identical to GI:928809
	4_8130001_8160000				3	244	0	4416	1.4692015E-4	1.4692015E-4	1
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,RAFL11-12-D09 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL05-17-H06	At4g16190 / cysteine proteinase		RAFL05-17-H06 ,At4g16190 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,RAFL08-11-G18 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
	3_19590001_19620000				4	243	3	4413	2.3698239E-4	7.1094715E-4	3
		RAFL08-10-B03	At3g52850 / spot 3 protein / vacuolar sorting receptor homolog (AtELP1)		RAFL08-10-B03 ,At3g52850 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog (GP:1737218) [Arabidopsis thaliana]
		RAFL09-17-G22	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL09-17-G22 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
		RAFL08-08-G21	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL08-08-G21 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
		RAFL05-03-M02	At3g52880 / monodehydroascorbate reductase, putative		At3g52880 ,RAFL05-03-M02 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407
	3_210001_240000				3	244	2	4414	0.0013562166	0.00406865	3
		RAFL08-18-G23	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL08-18-G23 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-16-I19	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL07-16-I19 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL05-12-D03	At3g01540 / DEAD box RNA helicase (DRH1)		RAFL05-12-D03 ,At3g01540 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
	2_12360001_12390000				2	245	0	4416	0.002795081	0.002795081	1
		RAFL07-14-N08	At2g28910 / expressed protein		At2g28910 ,RAFL07-14-N08 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
		RAFL08-16-B05	At2g28910 / expressed protein		At2g28910 ,RAFL08-16-B05 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
	5_9510001_9540000				2	245	0	4416	0.002795081	0.002795081	1
		RAFL07-14-P04	At5g27150 / sodium proton exchanger (NHX1)		At5g27150 ,RAFL07-14-P04 sodium proton exchanger / Na+/H+ antiporter (NHX1) identical to Na+/H+ exchanger [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium proton exchanger Nhx1 [Arabidopsis thaliana] gi|4324597|gb|AAD16946; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
		RAFL05-04-M14	At5g27210 / expressed protein		RAFL05-04-M14 ,At5g27210 expressed protein weak similarity to seven transmembrane domain orphan receptor [Mus musculus] GI:4321619
	5_9300001_9600000				3	244	5	4411	0.0067411438	0.03370572	5
		RAFL07-14-P04	At5g27150 / sodium proton exchanger (NHX1)		At5g27150 ,RAFL07-14-P04 sodium proton exchanger / Na+/H+ antiporter (NHX1) identical to Na+/H+ exchanger [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium proton exchanger Nhx1 [Arabidopsis thaliana] gi|4324597|gb|AAD16946; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
		RAFL05-04-M14	At5g27210 / expressed protein		RAFL05-04-M14 ,At5g27210 expressed protein weak similarity to seven transmembrane domain orphan receptor [Mus musculus] GI:4321619
		RAFL06-07-O17	At5g27280 / expressed protein		At5g27280 ,RAFL06-07-O17 zinc finger (DNL type) family protein contains Pfam profile PF05180: DNL zinc finger
	2_19590001_19620000				2	245	1	4415	0.008091402	0.016182804	2
		RAFL05-13-O08	At2g48020 / sugar transporter, putative		RAFL05-13-O08 ,At2g48020 sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein
		RAFL11-01-G07	At2g48070 / expressed protein		RAFL11-01-G07 ,At2g48070 expressed protein
	1_23580001_23610000				2	245	1	4415	0.008091402	0.016182804	2
		RAFL06-13-G03	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL06-13-G03 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
		RAFL05-04-D08	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL05-04-D08 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
	4_10230001_10260000				2	245	1	4415	0.008091402	0.016182804	2
		RAFL06-15-J24	At4g21110 / G10 - like protein		RAFL06-15-J24 ,At4g21110 G10 family protein contains Pfam profile: PF01125 G10 protein
		RAFL08-17-N18	At4g21160 / zinc finger and C2 domain protein (ZAC)		At4g21160 ,RAFL08-17-N18 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana]
	4_8100001_8400000				4	243	12	4404	0.008436354	0.07592718	9
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,RAFL11-12-D09 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL05-17-H06	At4g16190 / cysteine proteinase		RAFL05-17-H06 ,At4g16190 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,RAFL08-11-G18 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas]
		RAFL02-06-D19	At4g16520 / symbiosis-related like protein		At4g16520 ,RAFL02-06-D19 autophagy 8f (APG8f) identical to autophagy 8f [Arabidopsis thaliana] GI:19912161; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3
	5_24810001_24840000				2	245	2	4414	0.015618202	0.046854608	3
		RAFL07-13-D23	At5g62530 / delta-1-pyrroline-5-carboxylate dehydrogenase		At5g62530 ,RAFL07-13-D23 delta-1-pyrroline-5-carboxylate dehydrogenase (P5CDH) identical to delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Arabidopsis thaliana] gi|15383744|gb|AAK73756; identical to cDNA delta-1-pyrroline-5-carboxylate dehydrogenase precursor (P5CDH) nuclear gene for mitochondrial product GI:15383743; contains Pfam profile PF00171:aldehyde dehydrogenase (NAD) family protein
		RAFL05-02-G23	At5g62540 / ubiquitin-conjugating enzyme 3 (UBC3)		RAFL05-02-G23 ,At5g62540 ubiquitin-conjugating enzyme 3 (UBC3) E2; identical to gi:431261, SP:P42746
	3_19980001_20010000				2	245	2	4414	0.015618202	0.046854608	3
		RAFL03-05-E08	At3g53990 / expressed protein		At3g53990 ,RAFL03-05-E08 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
		RAFL02-10-G21	At3g53990 / expressed protein		At3g53990 ,RAFL02-10-G21 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
	5_21330001_21360000				2	245	2	4414	0.015618202	0.046854608	3
		RAFL04-15-I01	At5g53350 / ATP-dependent Clp protease ATP-binding subunit ClpX1		At5g53350 ,RAFL04-15-I01 ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) identical to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana]
		RAFL03-08-G12	At5g53330 / proline-rich cell wall protein-related		RAFL03-08-G12 ,At5g53330 expressed protein
	5_6690001_6720000				2	245	2	4414	0.015618202	0.046854608	3
		RAFL09-09-M04	At5g19860 / expressed protein		RAFL09-09-M04 ,At5g19860 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
		RAFL06-07-G22	At5g19860 / expressed protein		RAFL06-07-G22 ,At5g19860 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
	5_5250001_5280000				2	245	2	4414	0.015618202	0.046854608	3
		RAFL05-17-J22	At5g16110 / expressed protein		At5g16110 ,RAFL05-17-J22 expressed protein hypothetical protein T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
		RAFL09-15-H19	At5g16120 / hydrolase, alpha/beta fold family		At5g16120 ,RAFL09-15-H19 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	5_600001_900000				4	243	16	4400	0.01901638	0.20918018	11
		RAFL05-18-L21	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-18-L21 polyubiquitin (UBQ3) identical to GI:928809
		RAFL06-08-I12	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL06-08-I12 polyubiquitin (UBQ3) identical to GI:928809
		RAFL04-14-D12	At5g03230 / expressed protein		At5g03230 ,RAFL04-14-D12 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584
		RAFL05-21-L02	At5g03240 / polyubiquitin (UBQ3)		At5g03240 ,RAFL05-21-L02 polyubiquitin (UBQ3) identical to GI:928809
	3_3000001_3030000				2	245	3	4413	0.025126193	0.10050477	4
		RAFL04-16-N13	At3g09840 / transitional endoplasmic reticulum ATPase -related		At3g09840 ,RAFL04-16-N13 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}
		RAFL09-09-B17	At3g09850 / expressed protein		At3g09850 ,RAFL09-09-B17 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain
	3_3000001_3300000				3	244	10	4406	0.028285021	0.2828502	10
		RAFL04-16-N13	At3g09840 / transitional endoplasmic reticulum ATPase -related		At3g09840 ,RAFL04-16-N13 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}
		RAFL09-09-B17	At3g09850 / expressed protein		At3g09850 ,RAFL09-09-B17 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain
		RAFL05-14-I02	At3g10020 / expressed protein		RAFL05-14-I02 ,At3g10020 expressed protein
	1_23400001_23700000				3	244	11	4405	0.034623235	0.24236265	7
		RAFL06-13-G03	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL06-13-G03 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
		RAFL06-16-A16	At1g64040 / phosphoprotein phosphatase-type 1 catalytic subunit		RAFL06-16-A16 ,At1g64040 serine/threonine protein phosphatase PP1 isozyme 3 (TOPP3) / phosphoprotein phosphatase 1 identical to SP|P48483 Serine/threonine protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GB:AAA32838 GI:166799 from [Arabidopsis thaliana]
		RAFL05-04-D08	At1g64520 / 26S proteasome regulatory subunit (RPN12), putative		At1g64520 ,RAFL05-04-D08 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB:AAF08395 GI:6434966 from [Drosophila melanogaster]
	1_22830001_22860000				2	245	4	4412	0.036386058	0.10915817	3
		RAFL08-10-D22	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-10-D22 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-04-G22	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL05-04-G22 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
	4_12660001_12690000				2	245	4	4412	0.036386058	0.14554423	4
		RAFL05-03-O06	At4g27390 / expressed protein		RAFL05-03-O06 ,At4g27390 expressed protein hypothetical protein, Synechocystis sp., PIR2:S77328
		RAFL05-12-B14	At4g27390 / expressed protein		At4g27390 ,RAFL05-12-B14 expressed protein hypothetical protein, Synechocystis sp., PIR2:S77328
	3_2400001_2700000				3	244	12	4404	0.04162972	0.4162972	10
		RAFL03-04-J10	At3g07560 / glycine-rich protein		At3g07560 ,RAFL03-04-J10 glycine-rich protein
		RAFL05-21-O04	At3g08860 / alanine--glyoxylate aminotransferase (beta-alanine-pyruvate aminotransferase/AGT), putative		RAFL05-21-O04 ,At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative similar to similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus}; contains Pfam profile PF00202: aminotransferase, class III
		RAFL05-09-B20	At3g08590 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -related		RAFL05-09-B20 ,At3g08590 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily
	2_10200001_10500000				2	245	5	4411	0.049187053	0.19674821	4
		RAFL09-07-I23	At2g24420 / expressed protein		RAFL09-07-I23 ,At2g24420 DNA repair ATPase-related contains 2 transmembrane domains; similar to DNA double-strand break repair rad50 ATPase. (Swiss-Prot:O33600) [Sulfolobus acidocaldarius]
		RAFL09-18-K24	At2g24180 / cytochrome P450 family		At2g24180 ,RAFL09-18-K24 cytochrome P450 family protein
	5_5100001_5400000				3	244	13	4403	0.049289726	0.542187	11
		RAFL05-17-J22	At5g16110 / expressed protein		At5g16110 ,RAFL05-17-J22 expressed protein hypothetical protein T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
		RAFL09-15-H19	At5g16120 / hydrolase, alpha/beta fold family		At5g16120 ,RAFL09-15-H19 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL05-21-E21	At5g15860 / Carboxylesterase-related protein		RAFL05-21-E21 ,At5g15860 expressed protein
Cluster:8-1					A	B	C	D	P	P'	N
	4_2700001_2730000				4	158	0	4501	1.4052555E-6	1.4052555E-6	1
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
	4_2700001_3000000				4	158	2	4499	1.9951145E-5	5.985344E-5	3
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
	1_3840001_3870000				2	160	0	4501	0.0011997843	0.0011997843	1
		RAFL05-01-K10	At1g11480 / expressed protein		RAFL05-01-K10 ,At1g11480 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
		RAFL05-19-M23	At1g11480 / expressed protein		At1g11480 ,RAFL05-19-M23 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
	4_13320001_13350000				2	160	0	4501	0.0011997843	0.0011997843	1
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
	4_1_3000000				9	153	72	4429	0.0018003528	0.04320847	24
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
	1_5400001_5430000				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL05-11-G07	At1g15740 / leucine rich repeat protein-related		RAFL05-11-G07 ,At1g15740 leucine-rich repeat family protein
		RAFL09-17-I16	At1g15740 / leucine rich repeat protein-related		RAFL09-17-I16 ,At1g15740 leucine-rich repeat family protein
	3_4020001_4050000				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL07-09-M01	At3g12740 / membrane protein common family		RAFL07-09-M01 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
		RAFL06-16-B16	At3g12740 / membrane protein common family		RAFL06-16-B16 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
	1_8400001_8430000				2	160	1	4500	0.0035169823	0.0070339646	2
		RAFL05-01-K23	At1g23780 / F-box protein family		RAFL05-01-K23 ,At1g23780 F-box family protein contains Pfam PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only protein 7 {Homo sapiens}; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
		RAFL05-07-D16	At1g23800 / mitochondrial aldehyde dehydrogenase (ALDH3)		At1g23800 ,RAFL05-07-D16 aldehyde dehydrogenase, mitochondrial (ALDH3) nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 [Arabidopsis thaliana] gi|19850249|gb|AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein
	4_12000001_15000000				12	150	142	4359	0.010761281	0.32283843	30
		RAFL05-14-K07	At4g27680 / expressed protein		RAFL05-14-K07 ,At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family
		RAFL07-10-J07	At4g31550 / WRKY family transcription factor		RAFL07-10-J07 ,At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL02-09-C13	At4g28240 / wound induced protein -related		At4g28240 ,RAFL02-09-C13 wound-responsive protein-related wound-induced protein - tomato (fragment), PIR2:S19773
		RAFL08-18-J23	At4g25650 / Rieske (2Fe-2S) domain-containing protein		RAFL08-18-J23 ,At4g25650 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain
		RAFL09-12-B15	At4g30600 / signal recognition particle receptor-related protein		At4g30600 ,RAFL09-12-B15 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain
		RAFL05-18-A07	At4g27500 / proton pump interactor		RAFL05-18-A07 ,At4g27500 expressed protein non-consensus GA donor splice site at exon 6
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-14-J24	At4g26750 / proline-rich protein family		RAFL05-14-J24 ,At4g26750 hydroxyproline-rich glycoprotein family protein
		RAFL11-01-P18	At4g31770 / calcineurin-like phosphoesterase family		At4g31770 ,RAFL11-01-P18 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
	1_2280001_2310000				2	160	3	4498	0.011195023	0.04478009	4
		RAFL05-09-H21	At1g07470 / transcription factor IIA large subunit		RAFL05-09-H21 ,At1g07470 transcription factor IIA large subunit, putative / TFIIA large subunit, putative nearly identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana]; contains Pfam profile: PF03153 transcription factor IIA, alpha/beta subunit
		RAFL08-18-K15	At1g07480 / transcription factor IIA large subunit		At1g07480 ,RAFL08-18-K15 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana]
	Chromosome:4				33	129	599	3902	0.0137234	0.45287222	33
		RAFL08-18-B11	At4g36990 / heat shock transcription factor 4 (HSF4)		RAFL08-18-B11 ,At4g36990 heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) identical to heat shock transcription factor 4 (HSF4) SP:Q96320 from [Arabidopsis thaliana]
		RAFL05-14-K07	At4g27680 / expressed protein		RAFL05-14-K07 ,At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family
		RAFL07-10-J07	At4g31550 / WRKY family transcription factor		RAFL07-10-J07 ,At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain
		RAFL09-17-E21	At4g19410 / pectinacetylesterase, putative		RAFL09-17-E21 ,At4g19410 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL09-10-G07	At4g18950 / protein kinase - like protein		At4g18950 ,RAFL09-10-G07 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674
		RAFL05-08-J06	At4g19640 / GTP-binding protein, putative		At4g19640 ,RAFL05-08-J06 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI:1370178 from [Lotus japonicus]
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-11-C11	At4g12040 / expressed protein		RAFL09-11-C11 ,At4g12040 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL11-02-D14	At4g36730 / G-box-binding factor 1		At4g36730 ,RAFL11-02-D14 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor
		RAFL09-14-I01	At4g33920 / expressed protein		At4g33920 ,RAFL09-14-I01 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL08-09-D17	At4g11220 / expressed protein		At4g11220 ,RAFL08-09-D17 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL04-12-D15	At4g38360 / expressed protein		RAFL04-12-D15 ,At4g38360 expressed protein contains Pfam profile PF03619: Domain of unknown function
		RAFL02-09-C13	At4g28240 / wound induced protein -related		At4g28240 ,RAFL02-09-C13 wound-responsive protein-related wound-induced protein - tomato (fragment), PIR2:S19773
		RAFL04-12-N22	At4g25170 / expressed protein		At4g25170 ,RAFL04-12-N22 expressed protein
		RAFL05-07-L01	At4g24400 / CBL-interacting protein kinase 8		RAFL05-07-L01 ,At4g24400 CBL-interacting protein kinase 8 (CIPK8) identical to CBL-interacting protein kinase 8 [Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
		RAFL08-18-J23	At4g25650 / Rieske (2Fe-2S) domain-containing protein		RAFL08-18-J23 ,At4g25650 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain
		RAFL09-12-B15	At4g30600 / signal recognition particle receptor-related protein		At4g30600 ,RAFL09-12-B15 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL05-18-A07	At4g27500 / proton pump interactor		RAFL05-18-A07 ,At4g27500 expressed protein non-consensus GA donor splice site at exon 6
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-14-J24	At4g26750 / proline-rich protein family		RAFL05-14-J24 ,At4g26750 hydroxyproline-rich glycoprotein family protein
		RAFL11-01-P18	At4g31770 / calcineurin-like phosphoesterase family		At4g31770 ,RAFL11-01-P18 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
	4_13200001_13500000				3	159	12	4489	0.013768106	0.110144846	8
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
	4_9300001_9600000				2	160	4	4497	0.016411448	0.08205724	5
		RAFL09-17-E21	At4g19410 / pectinacetylesterase, putative		RAFL09-17-E21 ,At4g19410 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]
		RAFL09-10-G07	At4g18950 / protein kinase - like protein		At4g18950 ,RAFL09-10-G07 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674
	5_18000001_21000000				8	154	93	4408	0.02332851	0.69985527	30
		RAFL04-13-A13	At5g51830 / fructokinase, putative		At5g51830 ,RAFL04-13-A13 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL11-01-G16	At5g47040 / Lon protease homolog 1 precursor		At5g47040 ,RAFL11-01-G16 Lon protease homolog 1, mitochondrial (LON) identical to Lon protease homolog 1 mitochondrial precursor SP:O64948 from [Arabidopsis thaliana]
		RAFL11-01-B13	At5g47650 / MutT/nudix family protein		At5g47650 ,RAFL11-01-B13 MutT/nudix family protein similar to Nucleoside diphosphate-linked moiety X motif 6 (Protein GFG) from {Xenopus laevis} SP|P13420, {Homo sapiens} SP|P53370; contains Pfam profile PF00293: NUDIX domain
		RAFL05-08-G05	At5g45900 / autophagy 7 (APG7)		RAFL05-08-G05 ,At5g45900 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family
		RAFL05-07-B03	At5g48655 / C3HC4-type zinc finger protein family		At5g48655 ,RAFL05-07-B03 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL05-20-O22	At5g47120 / Bax inhibitor-1 (BI-1), putative		RAFL05-20-O22 ,At5g47120 Bax inhibitor-1 putative / BI-1 putative SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear cress] {Arabidopsis thaliana}
		RAFL05-17-N23	At5g52200 / expressed protein		RAFL05-17-N23 ,At5g52200 expressed protein
		RAFL04-09-J20	At5g49480 / sodium-inducible calcium-binding protein		At5g49480 ,RAFL04-09-J20 sodium-inducible calcium-binding protein (ACP1) / sodium-responsive calcium-binding protein (ACP1) identical to NaCl-inducible Ca2+-binding protein GI:2352828 from [Arabidopsis thaliana]
	3_3900001_4200000				3	159	16	4485	0.026495453	0.26495454	10
		RAFL09-16-C16	At3g12570 / expressed protein		At3g12570 ,RAFL09-16-C16 expressed protein
		RAFL07-09-M01	At3g12740 / membrane protein common family		RAFL07-09-M01 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
		RAFL06-16-B16	At3g12740 / membrane protein common family		RAFL06-16-B16 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
	2_18600001_18900000				3	159	17	4484	0.03039473	0.48631567	16
		RAFL09-09-M22	At2g45600 / expressed protein		At2g45600 ,RAFL09-09-M22 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873
		RAFL05-09-B17	At2g45980 / expressed protein		RAFL05-09-B17 ,At2g45980 expressed protein
		RAFL05-05-A21	At2g45660 / MADS-box protein (AGL20)		At2g45660 ,RAFL05-05-A21 MADS-box protein (AGL20)
	1_20310001_20340000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-O09	At1g55530 / expressed protein		At1g55530 ,RAFL05-04-O09 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
	4_8700001_8730000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
	2_18750001_18780000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-05-A21	At2g45660 / MADS-box protein (AGL20)		At2g45660 ,RAFL05-05-A21 MADS-box protein (AGL20)
	5_19440001_19470000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-B03	At5g48655 / C3HC4-type zinc finger protein family		At5g48655 ,RAFL05-07-B03 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
	4_2640001_2670000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
	4_16260001_16290000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL11-02-D14	At4g36730 / G-box-binding factor 1		At4g36730 ,RAFL11-02-D14 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor
	2_14970001_15000000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-17-N14	At2g35760 / expressed integral membrane protein common family		RAFL05-17-N14 ,At2g35760 integral membrane family protein contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588)
	1_29640001_29670000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-03-J16	At1g79730 / proline-rich protein family		RAFL05-03-J16 ,At1g79730 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965
	4_13350001_13380000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
	2_7080001_7110000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-I02	At2g16500 / arginine decarboxylase		RAFL04-17-I02 ,At2g16500 arginine decarboxylase 1 (SPE1) (ARGDC) identical to SP|Q9SI64 Arginine decarboxylase 1 (EC 4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis thaliana}
	5_18300001_18330000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-G05	At5g45900 / autophagy 7 (APG7)		RAFL05-08-G05 ,At5g45900 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family
	5_900001_930000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-E03	At5g03560 / expressed protein		At5g03560 ,RAFL05-04-E03 expressed protein
	1_6690001_6720000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-17-D19	At1g19400 / expressed protein		At1g19400 ,RAFL05-17-D19 expressed protein
	5_21540001_21570000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-19-N02	At5g53800 / expressed protein		At5g53800 ,RAFL05-19-N02 expressed protein
	3_18570001_18600000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-H15	At3g50110 / tyrosine phosphatase -related		At3g50110 ,RAFL08-11-H15 phosphatase-related similar to PTEN1 GI:5566292 from [Drosophila melanogaster]; contains prosite evidence: PS00383: Tyrosine specific protein phosphatases active site
	1_19500001_19530000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-C18	At1g53400 / expressed protein		RAFL05-08-C18 ,At1g53400 expressed protein
	1_28440001_28470000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-H13	At1g76710 / SET-domain transcriptional regulator family		RAFL05-08-H13 ,At1g76710 SET domain-containing protein (ASHH1) low similarity to huntingtin interacting protein 1 [Homo sapiens] GI:12697196; contains Pfam profile PF00856: SET domain; identical to cDNA ASH1-like protein 1 (ASHH1) partial cds GI:15488417
	1_10410001_10440000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-12-J23	At1g29800 / expressed protein		At1g29800 ,RAFL04-12-J23 zinc finger (FYVE type) family protein contains Pfam domain PF01363: FYVE zinc finger
	3_7140001_7170000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL07-13-F01	At3g20500 / calcineurin-like phosphoesterase family		At3g20500 ,RAFL07-13-F01 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
	1_29490001_29520000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-09-G04	At1g79340 / putative latex-abundant protein		At1g79340 ,RAFL05-09-G04 latex-abundant protein, putative (AMC7) / caspase family protein similar to latex-abundant protein [Hevea brasiliensis] gb:AAD13216; contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain
	4_1260001_1290000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
	5_4200001_4230000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H19	At5g13190 / expressed protein		RAFL05-07-H19 ,At5g13190 expressed protein
	1_4470001_4500000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL07-16-B19	At1g13190 / RRM-containing protein		At1g13190 ,RAFL07-16-B19 RNA recognition motif (RRM)-containing protein
	5_21570001_21600000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-A17	At5g53890 / leucine-rich repeat transmembrane protein kinase, putative		RAFL08-11-A17 ,At5g53890 leucine-rich repeat transmembrane protein kinase, putative
	2_10830001_10860000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL03-05-A09	At2g25620 / protein phosphatase 2C (PP2C), putative		RAFL03-05-A09 ,At2g25620 protein phosphatase 2C, putative / PP2C, putative
	4_14040001_14070000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
	1_21120001_21150000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-16-A02	At1g58200 / expressed protein		At1g58200 ,RAFL05-16-A02 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel
	1_25380001_25410000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A15	At1g68580 / expressed protein		At1g68580 ,RAFL04-17-A15 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain and PF05641: Agenet domain
	2_10620001_10650000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-05-G05	At2g25140 / HSP100/ClpB, putative		RAFL05-05-G05 ,At2g25140 heat shock protein 100, putative / HSP100, putative / heat shock protein clpB, putative / HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530 [Phaseolus lunatus]
	5_8550001_8580000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-N23	At5g24930 / CONSTANS B-box zinc finger family protein		RAFL04-17-N23 ,At5g24930 zinc finger (B-box type) family protein similar to CONSTANS-like protein 1 GI:4091804 from [Malus x domestica]
	3_10020001_10050000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-09-G20	At3g27210 / expressed protein		RAFL08-09-G20 ,At3g27210 expressed protein
	5_5700001_5730000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-G06	At5g17380 / 2-hydroxyphytanoyl-CoA lyase-related protein		RAFL05-08-G06 ,At5g17380 pyruvate decarboxylase family protein similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens] GI:6273457; contains InterPro entry IPR000399: Pyruvate decarboxylase
	2_18720001_18750000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-09-M22	At2g45600 / expressed protein		At2g45600 ,RAFL09-09-M22 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873
	5_20760001_20790000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-13-A13	At5g51830 / fructokinase, putative		At5g51830 ,RAFL04-13-A13 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
	3_1230001_1260000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL03-05-K01	At3g04610 / KH domain protein		RAFL03-05-K01 ,At3g04610 KH domain-containing protein similar putative nucleic acid binding protein GB:CAB39665 [Arabidopsis thaliana]; Pfam HMM hit: KH domain family of RNA binding proteins
	2_12000001_12030000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-12-N06	At2g28305 / expressed protein		At2g28305 ,RAFL09-12-N06 expressed protein contains Pfam profile PF03641: decarboxylase family protein
	3_21210001_21240000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-19-O12	At3g57340 / DnaJ protein family		RAFL04-19-O12 ,At3g57340 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus musculus; contains Pfam profile PF00226 DnaJ domain
	4_9630001_9660000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-08-J06	At4g19640 / GTP-binding protein, putative		At4g19640 ,RAFL05-08-J06 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI:1370178 from [Lotus japonicus]
	3_5520001_5550000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-18-C18	At3g16340 / ABC transporter family protein		At3g16340 ,RAFL05-18-C18 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza]; contains Pfam profile: PF00005 ABC transporter
	4_11580001_11610000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-L01	At4g24400 / CBL-interacting protein kinase 8		RAFL05-07-L01 ,At4g24400 CBL-interacting protein kinase 8 (CIPK8) identical to CBL-interacting protein kinase 8 [Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
	3_19560001_19590000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A20	At3g52800 / zinc finger - like protein		At3g52800 ,RAFL04-17-A20 zinc finger (AN1-like) family protein contains Pfam domain, PF01428: AN1-like Zinc finger
	5_22140001_22170000				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-11-C20	At5g55310 / DNA topoisomerase I		RAFL08-11-C20 ,At5g55310 DNA topoisomerase I, putative similar to Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis thaliana]
	3_7200001_7500000				2	160	7	4494	0.03678091	0.29424727	8
		RAFL08-14-F20	At3g20920 / expressed protein		RAFL08-14-F20 ,At3g20920 translocation protein-related contains weak similarity to Drosophila translocation protein 1 (GI:558181) [Drosophila melanogaster]
		RAFL05-17-O13	At3g21230 / 4-coumarate:CoA ligase (4-coumaroyl-CoA synthase) (4CL), putative		At3g21230 ,RAFL05-17-O13 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL) similar to 4CL2 [gi:12229665] and 4CL1 [gi:12229649] from [Arabidopsis thaliana], 4CL1 [gi:12229631] from Nicotiana tabacum
	1_8400001_8700000				2	160	8	4493	0.044944704	0.40450233	9
		RAFL05-01-K23	At1g23780 / F-box protein family		RAFL05-01-K23 ,At1g23780 F-box family protein contains Pfam PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only protein 7 {Homo sapiens}; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
		RAFL05-07-D16	At1g23800 / mitochondrial aldehyde dehydrogenase (ALDH3)		At1g23800 ,RAFL05-07-D16 aldehyde dehydrogenase, mitochondrial (ALDH3) nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 [Arabidopsis thaliana] gi|19850249|gb|AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein
	1_3600001_3900000				2	160	8	4493	0.044944704	0.35955763	8
		RAFL05-01-K10	At1g11480 / expressed protein		RAFL05-01-K10 ,At1g11480 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
		RAFL05-19-M23	At1g11480 / expressed protein		At1g11480 ,RAFL05-19-M23 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens]
Cluster:4-1					A	B	C	D	P	P'	N
	5_14400001_14700000				3	307	2	4351	0.0026315711	0.007894713	3
		RAFL11-03-L10	At5g37260 / myb family transcription factor		RAFL11-03-L10 ,At5g37260 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL06-08-D19	At5g37510 / NADH dehydrogenase (ubiquinone), mitochondrial, putative		At5g37510 ,RAFL06-08-D19 NADH-ubiquinone dehydrogenase, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum [SP|Q43644]
		RAFL09-09-P07	At5g37360 / expressed protein		At5g37360 ,RAFL09-09-P07 expressed protein
	1_4200001_4500000				5	305	12	4341	0.0039994735	0.043994207	11
		RAFL06-10-N03	At1g12410 / ATP-dependent Clp protease proteolytic subunit (ClpR2)		At1g12410 ,RAFL06-10-N03 ATP-dependent Clp protease proteolytic subunit (ClpP2) identical to nClpP2 GI:5360589 from [Arabidopsis thaliana]
		RAFL07-08-J17	At1g13060 / 20S proteasome beta subunit E1 (PBE1)		At1g13060 ,RAFL07-08-J17 20S proteasome beta subunit E1 (PBE1) (PRCE) identical to GB:O23717; identical to cDNA proteasome subunit prce GI:2511595
		RAFL05-10-E01	At1g12370 / type II CPD photolyase PHR1 (PHR1)		At1g12370 ,RAFL05-10-E01 type II CPD photolyase PHR1 (PHR1) nearly identical to type II CPD photolyase PHR1 [Arabidopsis thaliana] GI:2984707; similar to class II DNA photolyase (GI:5081541) [Chlamydomonas reinhardtii]; supporting cDNA gi|2984706|gb|AF053365.1|AF053365
		RAFL05-05-L13	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL05-05-L13 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
		RAFL11-04-I04	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL11-04-I04 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
	3_9180001_9210000				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL06-11-N20	At3g25220 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP15-1)		At3g25220 ,RAFL06-11-N20 FK506-binding protein 2-1 (FKBP15-1) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38935 FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) {Arabidopsis thaliana}, immunophilin (FKBP15-1) GB:U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 93 (14), 6964-6969 (1996))
		RAFL06-10-D09	At3g25230 / peptidylprolyl isomerase (ROF1)		RAFL06-10-D09 ,At3g25230 peptidyl-prolyl cis-trans isomerase / FK506-binding protein (ROF1) identical to rotamase FKBP (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252 (5), 510-517 (1996))
	3_6300001_6330000				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL05-04-N24	At3g18410 / expressed protein		At3g18410 ,RAFL05-04-N24 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-12KD) (CI-12KD). (Swiss-Prot:Q03015) [Neurospora crassa]
		RAFL05-04-P18	At3g18420 / expressed protein		At3g18420 ,RAFL05-04-P18 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile: PF00515 tetratricopeptide repeat domain (TPR domain)
	1_4200001_4230000				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL06-10-N03	At1g12410 / ATP-dependent Clp protease proteolytic subunit (ClpR2)		At1g12410 ,RAFL06-10-N03 ATP-dependent Clp protease proteolytic subunit (ClpP2) identical to nClpP2 GI:5360589 from [Arabidopsis thaliana]
		RAFL05-10-E01	At1g12370 / type II CPD photolyase PHR1 (PHR1)		At1g12370 ,RAFL05-10-E01 type II CPD photolyase PHR1 (PHR1) nearly identical to type II CPD photolyase PHR1 [Arabidopsis thaliana] GI:2984707; similar to class II DNA photolyase (GI:5081541) [Chlamydomonas reinhardtii]; supporting cDNA gi|2984706|gb|AF053365.1|AF053365
	4_13410001_13440000				2	308	0	4353	0.0044063856	0.0044063856	1
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
	5_23130001_23160000				3	307	3	4350	0.005004816	0.020019265	4
		RAFL11-06-M12	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL11-06-M12 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL07-15-E16	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		RAFL07-15-E16 ,At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
		RAFL07-11-C15	At5g57870 / eukaryotic initiation factor 4 (eIF4), putative		At5g57870 ,RAFL07-11-C15 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain
	3_360001_390000				3	307	4	4349	0.00833001	0.04165005	5
		RAFL02-01-A08	At3g02090 / mitochondrial processing peptidase -related		RAFL02-01-A08 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL07-11-F08	At3g02090 / mitochondrial processing peptidase -related		RAFL07-11-F08 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL04-20-F07	At3g02090 / mitochondrial processing peptidase -related		RAFL04-20-F07 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
	1_8700001_9000000				3	307	4	4349	0.00833001	0.04165005	5
		RAFL03-02-D01	At1g25550 / expressed protein		At1g25550 ,RAFL03-02-D01 myb family transcription factor contains Pfam domain, PF00249: Myb-like DNA-binding domain
		RAFL07-12-O20	At1g25490 / serine/threonine protein phosphatase 2A, 65 KDa regulatory subunit A		At1g25490 ,RAFL07-12-O20 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit A (RCN1) identical to phosphoprotein phosphatase 2A, regulatory subunit A GI:1262171 from [Arabidopsis thaliana]
		RAFL08-18-G05	At1g25350 / glutamine-tRNA ligase (glutaminyl-tRNA synthetase) (GlnRS), putative		RAFL08-18-G05 ,At1g25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative similar to tRNA-glutamine synthetase GI:2995454 from [Lupinus luteus]
	5_20400001_20700000				4	306	9	4344	0.008475307	0.06780246	8
		RAFL04-16-C15	At5g51400 / expressed protein		At5g51400 ,RAFL04-16-C15 expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614
		RAFL05-07-K24	At5g51020 / expressed protein		At5g51020 ,RAFL05-07-K24 expressed protein similar to unknown protein (pir||S76207)
		RAFL05-07-C06	At5g50900 / expressed protein		At5g50900 ,RAFL05-07-C06 armadillo/beta-catenin repeat family protein armadillo/beta-catenin-like repeats, Pfam:PF00514
		RAFL05-19-C14	At5g51120 / polyadenylate-binding protein (poly(A)-binding protein), putative		RAFL05-19-C14 ,At5g51120 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	5_22500001_22800000				4	306	9	4344	0.008475307	0.059327148	7
		RAFL11-03-L09	At5g56350 / pyruvate kinase, putative		RAFL11-03-L09 ,At5g56350 pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Nicotiana tabacum] SWISS-PROT:Q42954
		RAFL07-08-B13	At5g56290 / peroxisomal targeting signal type 1 receptor (PEX5)		RAFL07-08-B13 ,At5g56290 peroxisomal targeting signal type 1 receptor (PEX5) identical to GI:3603353; contains Pfam profile PF00515 TPR Domain
		RAFL05-18-E13	At5g57020 / N-myristoyl transferase		RAFL05-18-E13 ,At5g57020 myristoyl-CoA:protein N-myristoyltransferase 1 (NMT1) identical to N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana] GI:7339834
		RAFL11-02-F18	At5g56460 / protein kinase, putative		At5g56460 ,RAFL11-02-F18 protein kinase, putative contains protein kinase domain, Pfam:PF00069
	3_21630001_21660000				2	308	1	4352	0.012636807	0.025273614	2
		RAFL05-17-H16	At3g58560 / endonuclease/exonuclease/phosphatase family		RAFL05-17-H16 ,At3g58560 endonuclease/exonuclease/phosphatase family protein similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family
		RAFL05-18-J06	At3g58500 / protein phosphatase PP2A catalytic subunit		At3g58500 ,RAFL05-18-J06 serine/threonine protein phosphatase PP2A-4 catalytic subunit (PP2A4) identical to SP|P48578 Serine/threonine protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 4) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase
	5_2640001_2670000				2	308	1	4352	0.012636807	0.025273614	2
		RAFL06-11-P24	At5g08300 / succinyl-CoA-ligase alpha subunit		At5g08300 ,RAFL06-11-P24 succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative identical to SP|P53586 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, alpha chain) (SCS-alpha) {Arabidopsis thaliana}; strong similarity to SP|P13086 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor {Rattus norvegicus}; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain
		RAFL02-01-E05	At5g08290 / YLS8, Dim1 homolog		At5g08290 ,RAFL02-01-E05 yellow-leaf-specific protein 8 (YLS8) / mitosis protein DIM1, putative contains Pfam domain PF02966: Mitosis protein DIM1; identical to cDNA YLS8 mRNA for Dim1 homolog GI:13122293
	3_3900001_3930000				2	308	1	4352	0.012636807	0.025273614	2
		RAFL11-02-J20	At3g12260 / expressed protein		At3g12260 ,RAFL11-02-J20 complex 1 family protein / LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family)
		RAFL09-10-O11	At3g12260 / expressed protein		At3g12260 ,RAFL09-10-O11 complex 1 family protein / LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family)
	3_3720001_3750000				2	308	1	4352	0.012636807	0.025273614	2
		RAFL02-06-B01	At3g11830 / chaperonin, putative		RAFL02-06-B01 ,At3g11830 chaperonin, putative similar to SWISS-PROT:P80313 T-complex protein 1, eta subunit (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL05-07-C13	At3g11800 / expressed protein		At3g11800 ,RAFL05-07-C13 expressed protein
	4_13200001_13500000				4	306	11	4342	0.014559092	0.116472736	8
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-09-P07	At4g29120 / expressed protein		RAFL05-09-P07 ,At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase
		RAFL08-16-B20	At4g29260 / acid phosphatase-related protein		At4g29260 ,RAFL08-16-B20 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
	3_4590001_4620000				3	307	6	4347	0.018093722	0.09046861	5
		RAFL07-16-E16	At3g13930 / acetyltransferase -related		RAFL07-16-E16 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL09-12-A19	At3g13930 / acetyltransferase -related		RAFL09-12-A19 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL11-09-K08	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		At3g13920 ,RAFL11-09-K08 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
	3_9000001_12000000				11	299	68	4285	0.018645054	0.42883623	23
		RAFL07-17-D11	At3g26300 / cytochrome P450 family		At3g26300 ,RAFL07-17-D11 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450
		RAFL07-09-E19	At3g27700 / RNA recognition motif (RRM) - containing protein		RAFL07-09-E19 ,At3g27700 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif
		RAFL07-08-F20	At3g24800 / E3 ubiquitin ligase, PRT1		RAFL07-08-F20 ,At3g24800 PRT1 protein (PRT1) E3, N-end rule ubiquitin ligase, contains two RING finger domain; identical to PRT1 [Arabidopsis thaliana] GI:3319884
		RAFL05-08-N12	At3g27080 / TOM20 -related		RAFL05-08-N12 ,At3g27080 mitochondrial import receptor subunit TOM20-3 / translocase of outer membrane 20 kDa subunit 3 (TOM20-3) identical to mitochondrial import receptor subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
		RAFL05-13-E16	At3g26420 / glycine-rich RNA-binding protein		At3g26420 ,RAFL05-13-E16 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
		RAFL06-07-A02	At3g27240 / cytochrome c -related		RAFL06-07-A02 ,At3g27240 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
		RAFL03-09-J10	At3g27925 / DegP protease		RAFL03-09-J10 ,At3g27925 DegP protease, putative SP:022609; almost identical to DegP protease precursor GB:AF028842 from [Arabidopsis thaliana] (J. Biol. Chem. 273 (12), 7094-7098 (1998))
		RAFL06-11-N20	At3g25220 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP15-1)		At3g25220 ,RAFL06-11-N20 FK506-binding protein 2-1 (FKBP15-1) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38935 FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) {Arabidopsis thaliana}, immunophilin (FKBP15-1) GB:U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 93 (14), 6964-6969 (1996))
		RAFL09-09-A19	At3g27090 / gda-1 -related		RAFL09-09-A19 ,At3g27090 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
		RAFL05-03-N24	At3g28710 / adenosine triphosphatase -related		At3g28710 ,RAFL05-03-N24 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit
		RAFL06-10-D09	At3g25230 / peptidylprolyl isomerase (ROF1)		RAFL06-10-D09 ,At3g25230 peptidyl-prolyl cis-trans isomerase / FK506-binding protein (ROF1) identical to rotamase FKBP (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252 (5), 510-517 (1996))
	1_6000001_9000000				14	296	101	4252	0.022402924	0.6272819	28
		RAFL05-03-P24	At1g19140 / expressed protein		RAFL05-03-P24 ,At1g19140 expressed protein
		RAFL03-02-D01	At1g25550 / expressed protein		At1g25550 ,RAFL03-02-D01 myb family transcription factor contains Pfam domain, PF00249: Myb-like DNA-binding domain
		RAFL07-12-O20	At1g25490 / serine/threonine protein phosphatase 2A, 65 KDa regulatory subunit A		At1g25490 ,RAFL07-12-O20 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit A (RCN1) identical to phosphoprotein phosphatase 2A, regulatory subunit A GI:1262171 from [Arabidopsis thaliana]
		RAFL11-03-C17	At1g22940 / phosphomethylpyrimidine kinase		At1g22940 ,RAFL11-03-C17 thiamin biosynthesis protein, putative strong similarity to hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase (BTH1) GI:7488455 from [Brassica napus]
		RAFL07-17-K18	At1g20880 / RNA recognition motif (RRM) - containing protein		At1g20880 ,RAFL07-17-K18 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386
		RAFL11-02-O13	At1g18660 / RING finger protein family		RAFL11-02-O13 ,At1g18660 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type
		RAFL04-09-G11	At1g23130 / Bet v I allergen family		RAFL04-09-G11 ,At1g23130 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)]; location of ESTs gb|T45139 and gb|T43456 ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL07-09-N02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL07-09-N02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL07-15-D17	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL07-15-D17 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
		RAFL08-18-G05	At1g25350 / glutamine-tRNA ligase (glutaminyl-tRNA synthetase) (GlnRS), putative		RAFL08-18-G05 ,At1g25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative similar to tRNA-glutamine synthetase GI:2995454 from [Lupinus luteus]
		RAFL05-10-C05	At1g18150 / mitogen-activated protein kinase (MAPK), putative (MPK8)		RAFL05-10-C05 ,At1g18150 mitogen-activated protein kinase, putative / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis thaliana] gi|7106542|dbj|BAA92222; mitogen-activated protein kinase (MAPK), PMID:12119167; similar to mitogen-activated protein kinase GI:5815410 from (Oryza sativa)
		RAFL05-21-D23	At1g21720 / 20S proteasome beta subunit C (PBC1)		At1g21720 ,RAFL05-21-D23 20S proteasome beta subunit C1 (PBC1) (PRCT) almost identical to GB:AAC32069 from [Arabidopsis thaliana], EST gb|T76747 comes from this gene; identical to cDNA proteasome subunit prct GI:2511567
		RAFL11-04-J02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL11-04-J02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL05-18-A10	At1g22850 / expressed protein		RAFL05-18-A10 ,At1g22850 expressed protein
	5_5670001_5700000				2	308	2	4351	0.024166461	0.07249938	3
		RAFL09-12-G22	At5g17310 / UDP-glucose pyrophosphorylase		At5g17310 ,RAFL09-12-G22 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum}; contains Pfam profile PF01704: UTP--glucose-1-phosphate uridylyltransferase
		RAFL09-15-M21	At5g17310 / UDP-glucose pyrophosphorylase		At5g17310 ,RAFL09-15-M21 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum}; contains Pfam profile PF01704: UTP--glucose-1-phosphate uridylyltransferase
	1_4380001_4410000				2	308	2	4351	0.024166461	0.07249938	3
		RAFL05-05-L13	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL05-05-L13 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
		RAFL11-04-I04	At1g12920 / eukaryotic peptide chain release factor subunit 1 -related		RAFL11-04-I04 ,At1g12920 eukaryotic release factor 1 family protein / eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3
	3_6210001_6240000				2	308	2	4351	0.024166461	0.07249938	3
		RAFL08-11-G19	At3g18165 / expressed protein		At3g18165 ,RAFL08-11-G19 expressed protein similar to DAM1 (GI:3985930) [Homo sapiens]; contains Pfam profile PF05700: Breast carcinoma amplified sequence 2 (BCAS2)
		RAFL05-04-O11	At3g18190 / chaperonin, putative		At3g18190 ,RAFL05-04-O11 chaperonin, putative similar to SWISS-PROT:P50991- T-complex protein 1, delta subunit (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
	2_14490001_14520000				2	308	2	4351	0.024166461	0.07249938	3
		RAFL11-13-L01	At2g34520 / ribosomal protein S14p family, mitochondrial precursor		At2g34520 ,RAFL11-13-L01 ribosomal protein S14 mitochondrial family protein identical to ribosomal protein S14 {Arabidopsis thaliana} NCBI_gi:4583554
		RAFL06-08-D06	At2g34590 / pyruvate dehydrogenase E1 beta subunit -related		At2g34590 ,RAFL06-08-D06 transketolase family protein similar to SP|O66113 Pyruvate dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain
	1_6090001_6120000				2	308	2	4351	0.024166461	0.07249938	3
		RAFL07-09-N02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL07-09-N02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
		RAFL11-04-J02	At1g17720 / type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit		RAFL11-04-J02 ,At1g17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) [Arabidopsis thaliana]; similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
	3_1800001_2100000				3	307	7	4346	0.02459708	0.14758249	6
		RAFL05-07-O11	At3g06650 / ATP citrate lyase -related		RAFL05-07-O11 ,At3g06650 ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate cleavage enzyme, putative strong similarity to ATP:citrate lyase [Capsicum annuum] GI:13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain
		RAFL05-05-O12	At3g06570 / Kelch repeat containing F-box protein family		RAFL05-05-O12 ,At3g06570 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344
		RAFL05-09-E15	At3g06483 / pyruvate dehydrogenase (lipoamide) kinase (pdhk)		RAFL05-09-E15 ,At3g06483 pyruvate dehydrogenase (lipoamide) kinase (PDHK) nearly identical to pyruvate dehydrogenase kinase [Arabidopsis thaliana] GI:3641834
	5_9000001_9300000				3	307	7	4346	0.02459708	0.14758249	6
		RAFL05-17-I01	At5g26210 / nucleic acid binding protein - like		RAFL05-17-I01 ,At5g26210 PHD finger family protein contains Pfam domain, PF00628: PHD-finger
		RAFL05-14-F02	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL05-14-F02 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
		RAFL09-17-A07	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-17-A07 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
	4_12000001_15000000				17	293	137	4216	0.032195207	0.96585625	30
		RAFL05-08-E11	At4g29390 / 40S ribosomal protein S30 (RPS30B)		At4g29390 ,RAFL05-08-E11 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana,PID:e1358183
		RAFL05-09-P07	At4g29120 / expressed protein		RAFL05-09-P07 ,At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase
		RAFL11-03-M02	At4g28530 / No apical meristem (NAM) protein family		RAFL11-03-M02 ,At4g28530 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; No apical meristem gene (NAM), required for pattern formation in embryos and flowers-Petunia hybrida, PATCHX:E205713
		RAFL08-16-B20	At4g29260 / acid phosphatase-related protein		At4g29260 ,RAFL08-16-B20 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI:3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL02-08-O23	At4g27380 / expressed protein		At4g27380 ,RAFL02-08-O23 expressed protein
		RAFL09-17-K23	At4g28025 / expressed protein		RAFL09-17-K23 ,At4g28025 expressed protein
		RAFL07-09-H05	At4g28440 / expressed protein		RAFL07-09-H05 ,At4g28440 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098
		RAFL05-07-C03	At4g30610 / serine carboxypeptidase -related		RAFL05-07-C03 ,At4g30610 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
		RAFL05-18-K24	At4g29350 / profilin 2		RAFL05-18-K24 ,At4g29350 profilin 2 (PRO2) (PFN2) (PRF2) identical to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis thaliana]; identical to cDNA profilin (PRF2) GI:9965570
		RAFL05-04-A06	At4g29810 / mitogen-activated protein kinase kinase (MAPKK)(MKK2)		At4g29810 ,RAFL05-04-A06 mitogen-activated protein kinase kinase (MAPKK) (MKK2) identical to MAP kinase kinase 2 [Arabidopsis thaliana] gi|3219267|dbj|BAA28828; mitogen-activated protein kinase kinase (MAPKK) family, PMID:12119167
		RAFL05-10-C19	At4g26210 / expressed protein		At4g26210 ,RAFL05-10-C19 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit
		RAFL03-07-B04	At4g30010 / expressed protein		RAFL03-07-B04 ,At4g30010 expressed protein
		RAFL06-09-O09	At4g26710 / expressed protein		At4g26710 ,RAFL06-09-O09 ATP synthase subunit H family protein contains similarity to Swiss-Prot:O15342 Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) [Homo sapiens]
		RAFL05-09-P06	At4g31030 / hypothetical protein		At4g31030 ,RAFL05-09-P06 expressed protein
		RAFL09-11-F14	At4g27870 / expressed protein		At4g27870 ,RAFL09-11-F14 integral membrane family protein contains Pfam PF01988: Integral membrane protein
		RAFL06-13-O04	At4g31170 / protein kinase family		RAFL06-13-O04 ,At4g31170 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719
		RAFL02-02-I08	At4g32470 / ubiquinol-cytochrome c reductase - like protein		At4g32470 ,RAFL02-02-I08 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative similar to SP|P48502 Ubiquinol-cytochrome C reductase complex 14 kDa protein (EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam profile PF02271: Ubiquinol-cytochrome C reductase complex 14kD subunit
	3_4500001_4800000				4	306	15	4338	0.03352726	0.36879984	11
		RAFL07-16-E16	At3g13930 / acetyltransferase -related		RAFL07-16-E16 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL04-12-B09	At3g14290 / 20S proteasome alpha subunit E2 (PAE2)		At3g14290 ,RAFL04-12-B09 20S proteasome alpha subunit E2 (PAE2) identical to 20S proteasome subunit PAE2 GB:AAC32061 from [Arabidopsis thaliana]
		RAFL09-12-A19	At3g13930 / acetyltransferase -related		RAFL09-12-A19 ,At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL11-09-K08	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		At3g13920 ,RAFL11-09-K08 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
	4_16950001_16980000				2	308	3	4350	0.038523052	0.15409221	4
		RAFL04-09-A19	At4g38510 / probable H+-transporting ATPase		RAFL04-09-A19 ,At4g38510 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain
		RAFL07-17-H08	At4g38510 / probable H+-transporting ATPase		RAFL07-17-H08 ,At4g38510 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain
	5_6780001_6810000				2	308	3	4350	0.038523052	0.11556916	3
		RAFL06-11-L14	At5g20180 / ribosomal protein L36-related		At5g20180 ,RAFL06-11-L14 ribosomal protein L36 family protein contains Pfam profile: PF00444 ribosomal protein L36
		RAFL05-21-B19	At5g20090 / expressed protein		At5g20090 ,RAFL05-21-B19 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041)
	2_18840001_18870000				2	308	3	4350	0.038523052	0.15409221	4
		RAFL11-06-I12	At2g45950 / E3 ubiquitin ligase SCF complex subunit SKP1/ASK1-related		At2g45950 ,RAFL11-06-I12 SKP1 family protein similar to glycoprotein FP21 SP:P52285 from [Dictyostelium discoideum]; contains Pfam profile PF01466: Skp1 family, dimerisation domain
		RAFL05-19-H24	At2g45990 / expressed protein		RAFL05-19-H24 ,At2g45990 expressed protein
	5_12000001_15000000				5	305	24	4329	0.03993594	0.678911	17
		RAFL11-03-L10	At5g37260 / myb family transcription factor		RAFL11-03-L10 ,At5g37260 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL05-18-D04	At5g36880 / acetyl-CoA synthetase (acetate-CoA ligase), putative		RAFL05-18-D04 ,At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative similar to SP|P27550 (Escherichia coli) and gi:8439651 (Homo sapiens); contains Pfam AMP-binding enzyme domain PF00501
		RAFL11-05-O08	At5g35200 / expressed protein		RAFL11-05-O08 ,At5g35200 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to clathrin assembly protein short form, Rattus norvegicus, EMBL:AF041373;similar to Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo sapiens}
		RAFL06-08-D19	At5g37510 / NADH dehydrogenase (ubiquinone), mitochondrial, putative		At5g37510 ,RAFL06-08-D19 NADH-ubiquinone dehydrogenase, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum [SP|Q43644]
		RAFL09-09-P07	At5g37360 / expressed protein		At5g37360 ,RAFL09-09-P07 expressed protein
	3_9900001_10200000				3	307	9	4344	0.040857635	0.32686108	8
		RAFL05-08-N12	At3g27080 / TOM20 -related		RAFL05-08-N12 ,At3g27080 mitochondrial import receptor subunit TOM20-3 / translocase of outer membrane 20 kDa subunit 3 (TOM20-3) identical to mitochondrial import receptor subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
		RAFL06-07-A02	At3g27240 / cytochrome c -related		RAFL06-07-A02 ,At3g27240 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
		RAFL09-09-A19	At3g27090 / gda-1 -related		RAFL09-09-A19 ,At3g27090 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
	3_6600001_6900000				3	307	9	4344	0.040857635	0.32686108	8
		RAFL05-16-H07	At3g19760 / eukaryotic translation initiation factor 4A (eIF-4A), putative		At3g19760 ,RAFL05-16-H07 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
		RAFL06-09-F12	At3g19220 / expressed protein		RAFL06-09-F12 ,At3g19220 expressed protein
		RAFL06-11-M09	At3g19640 / expressed protein		At3g19640 ,RAFL06-11-M09 magnesium transporter CorA-like family protein (MRS2-3) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
Cluster:3-2					A	B	C	D	P	P'	N
	3_8580001_8610000				6	31	1	4625	1.1369287E-12	2.2738573E-12	2
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
	3_8400001_8700000				6	31	11	4615	1.89826E-9	1.518608E-8	8
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
	3_6000001_9000000				7	30	123	4503	5.706903E-5	0.0015979329	28
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
	3_20400001_20700000				2	35	12	4614	0.0052507473	0.063008964	12
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
	4_7620001_7650000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-16-L21	At4g15210 / glycosyl hydrolase family 14 (beta-amylase)		At4g15210 ,RAFL05-16-L21 beta-amylase (BMY1) / 1,4-alpha-D-glucan maltohydrolase identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) SP:P25853 [Arabidopsis thaliana]
	4_14970001_15000000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL04-09-N03	At4g33220 / pectinesterase family		RAFL04-09-N03 ,At4g33220 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
	1_17850001_17880000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-02-N23	At1g49430 / long-chain-fatty-acid--CoA ligase (acyl CoA synthetase)		At1g49430 ,RAFL05-02-N23 long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase nearly identical to acyl CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
	5_24750001_24780000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL04-18-B07	At5g62350 / pectinesterase family		RAFL04-18-B07 ,At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor; FL5-2I22 mRNA for DC 1.2 homolog, partial cds GI:11127598
	1_28860001_28890000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL09-07-M15	At1g77760 / nitrate reductase 1 (NR1)		RAFL09-07-M15 ,At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana}
	3_9390001_9420000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL03-08-F09	At3g25770 / allene oxide cyclase family		RAFL03-08-F09 ,At3g25770 allene oxide cyclase, putative / early-responsive to dehydration protein, putative / ERD protein, putative strong similarity to early-responsive to dehydration (ERD12) protein [GI:15320414]; similar to allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase
	5_25020001_25050000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL11-10-F22	At5g63160 / expressed protein		At5g63160 ,RAFL11-10-F22 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens]
	3_15600001_15630000				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-09-N18	At3g43720 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-09-N18 ,At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	Chromosome:3				14	23	903	3723	0.0107122185	0.3535032	33
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL06-11-L24	At3g46650 / UDP-glycosyltransferase family		At3g46650 ,RAFL06-11-L24 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
		RAFL07-08-K09	At3g16000 / myosin heavy chain-related protein		RAFL07-08-K09 ,At3g16000 matrix-localized MAR DNA-binding protein-related similar to matrix-localized MAR DNA binding protein MFP1 GI:1771158 from [Lycopersicon esculentum]
		RAFL07-12-E11	At3g02230 / reversibly glycosylated polypeptide-1		At3g02230 ,RAFL07-12-E11 reversibly glycosylated polypeptide-1 (RGP1) identical to reversibly glycosylated polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
		RAFL03-08-F09	At3g25770 / allene oxide cyclase family		RAFL03-08-F09 ,At3g25770 allene oxide cyclase, putative / early-responsive to dehydration protein, putative / ERD protein, putative strong similarity to early-responsive to dehydration (ERD12) protein [GI:15320414]; similar to allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL05-09-N18	At3g43720 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-09-N18 ,At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
	4_6840001_6870000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-19-L09	At4g13580 / disease resistance response protein-related		RAFL04-19-L09 ,At4g13580 disease resistance-responsive family protein contains similarity to pathogenesis-related protein [Pisum sativum] gi|4585273|gb|AAD25355
	1_210001_240000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL07-15-C03	At1g01610 / expressed protein		At1g01610 ,RAFL07-15-C03 phospholipid/glycerol acyltransferase family protein similar to unknown protein GI:3335359 from [Arabidopsis thaliana]
	1_3390001_3420000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-12-M19	At1g10360 / glutathione transferase, putative		RAFL04-12-M19 ,At1g10360 glutathione S-transferase, putative similar to glutathione S-transferase (sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275 gb:AB039930.
	3_20430001_20460000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
	5_16350001_16380000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-13-D07	At5g41600 / expressed protein		At5g41600 ,RAFL04-13-D07 reticulon family protein (RTNLB4) weak similarity to Nogo-C protein [Rattus norvegicus] GI:6822251, SP|O95197 Reticulon protein 3 (Neuroendocrine-specific protein-like) {Homo sapiens}; contains Pfam profile PF02453: Reticulon
	2_15390001_15420000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL05-05-O01	At2g36830 / major intrinsic protein (MIP) family		At2g36830 ,RAFL05-05-O01 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230
	1_9150001_9180000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-14-G14	At1g26560 / glycosyl hydrolase family 1		At1g26560 ,RAFL04-14-G14 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]
	2_16230001_16260000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL03-08-H22	At2g39010 / major intrinsic protein aquaporin, putative		RAFL03-08-H22 ,At2g39010 aquaporin, putative similar to plasma membrane aquaporin 2b GI:7209560 from [Raphanus sativus]
	4_17250001_17280000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL11-02-K13	At4g39330 / mannitol dehydrogenase, putative		RAFL11-02-K13 ,At4g39330 mannitol dehydrogenase, putative nearly identical to SP|P42734, probable mannitol dehydrogenase
	5_2490001_2520000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL08-10-H13	At5g07830 / glycosyl hydrolase family 79 (endo-beta-glucuronidase/heparanase)		At5g07830 ,RAFL08-10-H13 glycosyl hydrolase family 79 N-terminal domain-containing protein similar to beta-glucuronidase GI:8918740 from [Scutellaria baicalensis]
	4_16110001_16140000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-16-A05	At4g36250 / aldehyde dehydrogenase family protein		RAFL04-16-A05 ,At4g36250 aldehyde dehydrogenase family protein contais aldehyde dehydrogenase (NADP) family protein domain, Pfam:PF00171
	3_5430001_5460000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL07-08-K09	At3g16000 / myosin heavy chain-related protein		RAFL07-08-K09 ,At3g16000 matrix-localized MAR DNA-binding protein-related similar to matrix-localized MAR DNA binding protein MFP1 GI:1771158 from [Lycopersicon esculentum]
	3_17190001_17220000				1	36	1	4625	0.015808338	0.031616677	2
		RAFL06-11-L24	At3g46650 / UDP-glycosyltransferase family		At3g46650 ,RAFL06-11-L24 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	3_20520001_20550000				1	36	2	4624	0.02362106	0.07086318	3
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
	3_7080001_7110000				1	36	2	4624	0.02362106	0.04724212	2
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
	1_2550001_2580000				1	36	2	4624	0.02362106	0.07086318	3
		RAFL04-17-M23	At1g08200 / dihydroflavonol reductase -related		At1g08200 ,RAFL04-17-M23 expressed protein
	4_11610001_11640000				1	36	2	4624	0.02362106	0.07086318	3
		RAFL04-17-O17	At4g24510 / CER2		At4g24510 ,RAFL04-17-O17 eceriferum protein (CER2) identical to (CER2) [Arabidopsis thaliana] GI:1213594; contains Pfam profile PF02458: Transferase family
	2_13080001_13110000				1	36	3	4623	0.031373426	0.1254937	4
		RAFL06-10-G18	At2g30870 / glutathione transferase, putative		RAFL06-10-G18 ,At2g30870 glutathione S-transferase, putative supported by cDNA GI:443698 GB:D17673
	1_28230001_28260000				1	36	3	4623	0.031373426	0.09412027	3
		RAFL09-09-K20	At1g76160 / pectinesterase (pectin methylesterase), putative		At1g76160 ,RAFL09-09-K20 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase
	3_390001_420000				1	36	3	4623	0.031373426	0.1254937	4
		RAFL07-12-E11	At3g02230 / reversibly glycosylated polypeptide-1		At3g02230 ,RAFL07-12-E11 reversibly glycosylated polypeptide-1 (RGP1) identical to reversibly glycosylated polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
	4_7500001_7800000				1	36	4	4622	0.039065886	0.11719766	3
		RAFL05-16-L21	At4g15210 / glycosyl hydrolase family 14 (beta-amylase)		At4g15210 ,RAFL05-16-L21 beta-amylase (BMY1) / 1,4-alpha-D-glucan maltohydrolase identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) SP:P25853 [Arabidopsis thaliana]
	2_13950001_13980000				1	36	4	4622	0.039065886	0.11719766	3
		RAFL07-11-K21	At2g32990 / glycosyl hydrolase family 9		At2g32990 ,RAFL07-11-K21 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa]
	2_18840001_18870000				1	36	4	4622	0.039065886	0.15626355	4
		RAFL06-15-B17	At2g45960 / plasma membrane intrinsic protein 1B		RAFL06-15-B17 ,At2g45960 plasma membrane intrinsic protein 1B (PIP1B) / aquaporin PIP1.2 (PIP1.2) / transmembrane protein A (TMPA) identical to plasma membrane intrinsic protein 1B SP:Q06611 from [Arabidopsis thaliana]
	4_6600001_6900000				1	36	5	4621	0.046698898	0.2801934	6
		RAFL04-19-L09	At4g13580 / disease resistance response protein-related		RAFL04-19-L09 ,At4g13580 disease resistance-responsive family protein contains similarity to pathogenesis-related protein [Pisum sativum] gi|4585273|gb|AAD25355
	1_28800001_29100000				1	36	5	4621	0.046698898	0.2801934	6
		RAFL09-07-M15	At1g77760 / nitrate reductase 1 (NR1)		RAFL09-07-M15 ,At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana}
Cluster:4-0					A	B	C	D	P	P'	N
	5_22080001_22110000				3	237	0	4423	1.3473156E-4	1.3473156E-4	1
		RAFL06-07-B07	At5g55190 / GTP-binding protein atran3, putative		RAFL06-07-B07 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
		RAFL05-17-L19	At5g55160 / ubiquitin-like protein SMT3, putative		At5g55160 ,RAFL05-17-L19 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP:P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family
		RAFL05-17-C16	At5g55190 / GTP-binding protein atran3, putative		RAFL05-17-C16 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
	2_18150001_18180000				3	237	1	4422	5.1836955E-4	0.0010367391	2
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
	5_21900001_22200000				5	235	12	4411	0.0012869332	0.009008532	7
		RAFL06-07-B07	At5g55190 / GTP-binding protein atran3, putative		RAFL06-07-B07 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
		RAFL05-17-L19	At5g55160 / ubiquitin-like protein SMT3, putative		At5g55160 ,RAFL05-17-L19 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP:P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family
		RAFL06-15-K24	At5g54750 / transport protein particle component Bet3p-related protein		RAFL06-15-K24 ,At5g54750 transport protein particle (TRAPP) component Bet3, putative similar to SP|P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3
		RAFL06-16-L13	At5g54960 / pyruvate decarboxylase (gb|AAB16855.1)		RAFL06-16-L13 ,At5g54960 pyruvate decarboxylase, putative strong similarity to pyruvate decarboxylase 1 [Vitis vinifera] GI:10732644; contains InterPro entry IPR000399: Pyruvate decarboxylase
		RAFL05-17-C16	At5g55190 / GTP-binding protein atran3, putative		RAFL05-17-C16 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
	5_24690001_24720000				2	238	0	4423	0.0026385873	0.0026385873	1
		RAFL07-10-M06	At5g62190 / DEAD box RNA helicase (prh75), putative		RAFL07-10-M06 ,At5g62190 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL02-05-I02	At5g62190 / DEAD box RNA helicase (prh75), putative		RAFL02-05-I02 ,At5g62190 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
	2_1950001_1980000				2	238	0	4423	0.0026385873	0.0026385873	1
		RAFL06-16-I15	At2g05380 / glycine-rich protein		RAFL06-16-I15 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL07-17-N22	At2g05380 / glycine-rich protein		RAFL07-17-N22 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
	1_20400001_20700000				4	236	10	4413	0.004549386	0.040944476	9
		RAFL07-11-O12	At1g56070 / elongation factor -related		RAFL07-11-O12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL09-07-M23	At1g55840 / sec14 cytosolic factor, putative (phosphoglyceride transfer protein, putative)		At1g55840 ,RAFL09-07-M23 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GB:AAB94598) [Glycine max]; identified in Eur J Biochem 1998 Dec 1;258(2):402-10 as AtSEC14, characterized by functional complementation in S. cerevisiae.
		RAFL07-10-E15	At1g56280 / drought-induced protein -related		At1g56280 ,RAFL07-10-E15 drought-responsive family protein contains an AT-AC intron 3, potentially contains a frameshift. An alternate model provides a translation more consistent with homologous proteins but lacks the AT-AC intron; similar to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321
		RAFL04-17-N12	At1g56070 / elongation factor -related		RAFL04-17-N12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	1_7860001_7890000				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-09-I09	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL09-09-I09 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
		RAFL06-07-O03	At1g22300 / 14-3-3 protein GF14 epsilon (grf10)		RAFL06-07-O03 ,At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]
	4_15930001_15960000				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL05-21-L13	At4g35880 / expressed protein		RAFL05-21-L13 ,At4g35880 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141
		RAFL06-11-K08	At4g35830 / aconitate hydratase (citrate hydro-lyase/aconitase/ACO) (cytoplasmic)		At4g35830 ,RAFL06-11-K08 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) identical to SP|Q42560 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Arabidopsis thaliana}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain
	1_26790001_26820000				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-11-I21	At1g72160 / cytosolic factor -related		RAFL09-11-I21 ,At1g72160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to GI:807956 from [Saccharomyces cerevisiae]similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus
		RAFL05-07-A22	At1g72150 / cytosolic factor -related		At1g72150 ,RAFL05-07-A22 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus}; similar to GI:807956 from [Saccharomyces cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus
	4_16740001_16770000				2	238	1	4422	0.0076462985	0.015292597	2
		RAFL09-14-G07	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		At4g37870 ,RAFL09-14-G07 phosphoenolpyruvate carboxykinase [ATP], putative / PEP carboxykinase, putative / PEPCK, putative similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase
		RAFL05-14-F18	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		RAFL05-14-F18 ,At4g37870 phosphoenolpyruvate carboxykinase [ATP], putative / PEP carboxykinase, putative / PEPCK, putative similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase
	2_6000001_9000000				10	230	75	4348	0.011240412	0.2810103	25
		RAFL07-08-P19	At2g19650 / CHP-rich zinc finger protein, putative		At2g19650 ,RAFL07-08-P19 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain
		RAFL11-05-K19	At2g20230 / expressed protein		At2g20230 ,RAFL11-05-K19 expressed protein
		RAFL08-13-K01	At2g18160 / bZIP family transcription factor		RAFL08-13-K01 ,At2g18160 bZIP transcription factor family protein contains a bZIP transcription factor basic domain signature (PDOC00036)
		RAFL05-10-J18	At2g15890 / expressed protein		At2g15890 ,RAFL05-10-J18 expressed protein
		RAFL05-12-M02	At2g20490 / expressed protein		At2g20490 ,RAFL05-12-M02 nucleolar RNA-binding Nop10p family protein similar to Nop10p (GI:8096260) [Homo sapiens]
		RAFL04-10-N15	At2g20725 / CAAX amino terminal protease family		At2g20725 ,RAFL04-10-N15 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein
		RAFL11-04-F01	At2g18900 / transducin / WD-40 repeat protein family		RAFL11-04-F01 ,At2g18900 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) [Leishmania donovani]
		RAFL05-16-A08	At2g16600 / cytosolic cyclophilin (ROC3)		At2g16600 ,RAFL05-16-A08 peptidyl-prolyl cis-trans isomerase, cytosolic / cyclophilin / rotamase (ROC3) identical to cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
		RAFL09-13-F17	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL09-13-F17 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL06-08-O23	At2g18280 / F-box containing tubby family protein		RAFL06-08-O23 ,At2g18280 tubby-like protein 2 (TULP2) identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
	1_5130001_5160000				2	238	2	4421	0.0147742275	0.044322684	3
		RAFL04-16-H01	At1g14960 / major latex protein (MLP)-related		At1g14960 ,RAFL04-16-H01 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:20810] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL04-12-M16	At1g14910 / expressed protein		RAFL04-12-M16 ,At1g14910 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo sapiens}
	2_18000001_18300000				4	236	16	4407	0.017271759	0.17271759	10
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-09-I23	At2g44090 / expressed protein		At2g44090 ,RAFL08-09-I23 expressed protein
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
	5_26100001_26400000				4	236	17	4406	0.020494834	0.28692767	14
		RAFL04-20-L08	At5g66040 / senescence-associated protein		RAFL04-20-L08 ,At5g66040 senescence-associated family protein almost identical to ketoconazole resistant protein GI:928938 from [Arabidopsis thaliana] full-length cDNA: Ceres:101608.
		RAFL08-08-F13	At5g66055 / expressed protein		At5g66055 ,RAFL08-08-F13 ankyrin repeat protein / AKRP (AKR) identical to ankyrin repeat protein (AKRP) [Arabidopsis thaliana] SWISS-PROT:Q05753
		RAFL06-10-I09	At5g66290 / hypothetical protein		RAFL06-10-I09 ,At5g66290 expressed protein
		RAFL04-20-B17	At5g66590 / pathogenesis-related protein family		RAFL04-20-B17 ,At5g66590 allergen V5/Tpx-1-related family protein contains similarity to SP|Q41495 STS14 protein precursor {Solanum tuberosum}; contains Pfam profile PF00188: SCP-like extracellular protein
	1_27300001_27600000				3	237	9	4414	0.020962995	0.20962994	10
		RAFL09-14-N04	At1g73590 / auxin transporter splice variant b -related		At1g73590 ,RAFL09-14-N04 auxin efflux carrier protein, putative (PIN1) identical to putative auxin efflux carrier protein; AtPIN1 [Arabidopsis thaliana] GI:4151319; contains Pfam profile PF03547: Auxin Efflux Carrier
		RAFL04-17-F10	At1g74230 / glycine-rich RNA-binding protein		RAFL04-17-F10 ,At1g74230 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris]
		RAFL11-02-J06	At1g74050 / 60S ribosomal protein L6 (RPL6C)		At1g74050 ,RAFL11-02-J06 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa]
	3_4380001_4410000				2	238	3	4420	0.023792636	0.09517054	4
		RAFL05-04-L08	At3g13460 / expressed protein		At3g13460 ,RAFL05-04-L08 expressed protein contains Pfam profile PF04146: YT521-B-like family
		RAFL11-02-P19	At3g13460 / expressed protein		At3g13460 ,RAFL11-02-P19 expressed protein contains Pfam profile PF04146: YT521-B-like family
	Chromosome:2				44	196	580	3843	0.02489118	0.821409	33
		RAFL09-12-H17	At2g43970 / VirF-interacting protein FIP1		RAFL09-12-H17 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL04-16-C20	At2g31390 / fructokinase, putative		RAFL04-16-C20 ,At2g31390 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
		RAFL06-09-H15	At2g47400 / chloroplast protein CP12 -related		RAFL06-09-H15 ,At2g47400 CP12 domain-containing protein contains Pfam profile: PF02672 CP12 domain
		RAFL06-15-F22	At2g46600 / calcium-binding protein, putative		RAFL06-15-F22 ,At2g46600 calcium-binding protein, putative similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] GI:9255753
		RAFL06-16-I15	At2g05380 / glycine-rich protein		RAFL06-16-I15 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL08-18-E23	At2g01420 / auxin transport protein, putative		RAFL08-18-E23 ,At2g01420 auxin transport protein, putative similar to auxin transport protein PIN7[Arabidopsis thaliana] gi|5817305|gb|AAD52697
		RAFL08-11-A04	At2g43970 / VirF-interacting protein FIP1		RAFL08-11-A04 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL08-09-D04	At2g39570 / ACT domain-containing protein		At2g39570 ,RAFL08-09-D04 ACT domain-containing protein contains Pfam ACT domain PF01842
		RAFL07-08-P19	At2g19650 / CHP-rich zinc finger protein, putative		At2g19650 ,RAFL07-08-P19 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain
		RAFL11-05-K19	At2g20230 / expressed protein		At2g20230 ,RAFL11-05-K19 expressed protein
		RAFL08-13-K01	At2g18160 / bZIP family transcription factor		RAFL08-13-K01 ,At2g18160 bZIP transcription factor family protein contains a bZIP transcription factor basic domain signature (PDOC00036)
		RAFL05-07-O19	At2g38550 / non-green plastid inner envelope membrane protein -related		At2g38550 ,RAFL05-07-O19 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136)
		RAFL04-12-F21	At2g25080 / glutathione peroxidase, putative		At2g25080 ,RAFL04-12-F21 phospholipid hydroperoxide glutathione peroxidase, chloroplast / PHGPx (GPX1) identical to SP|P52032 Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor (EC 1.11.1.9) (PHGPx) {Arabidopsis thaliana}; contains Glutathione peroxidases signatures, Glutathione_Peroxid_1 [GKVMLIVNVASRCGLT], Glutathione_Peroxid_2 [LAFPCNQF]; contains EST GB:T43669, N38679, R30227, H37043, AA042773; identical to cDNA chloroplast mRNA for glutathione peroxidase GI:2274856
		RAFL09-06-B02	At2g39990 / 26S proteasome regulatory subunit		At2g39990 ,RAFL09-06-B02 eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to SP|O04202 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
		RAFL05-10-J18	At2g15890 / expressed protein		At2g15890 ,RAFL05-10-J18 expressed protein
		RAFL05-12-M02	At2g20490 / expressed protein		At2g20490 ,RAFL05-12-M02 nucleolar RNA-binding Nop10p family protein similar to Nop10p (GI:8096260) [Homo sapiens]
		RAFL08-09-I23	At2g44090 / expressed protein		At2g44090 ,RAFL08-09-I23 expressed protein
		RAFL07-15-I12	At2g46280 / eukaryotic translation initiation factor 3 subunit 2/TGF-beta receptor interacting protein 1 (eIF-3 beta) (eIF3 p36) (eIF3i) (TRIP-1)		At2g46280 ,RAFL07-15-I12 eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies)
		RAFL04-13-A11	At2g29340 / short-chain dehydrogenase/reductase family protein		RAFL04-13-A11 ,At2g29340 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase-I GI:424160 from [Datura stramonium]
		RAFL04-16-O18	At2g40360 / transducin / WD-40 repeat protein family		At2g40360 ,RAFL04-16-O18 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus]
		RAFL04-14-F04	At2g21960 / expressed protein		At2g21960 ,RAFL04-14-F04 expressed protein
		RAFL02-06-A16	At2g43970 / VirF-interacting protein FIP1		RAFL02-06-A16 ,At2g43970 La domain-containing protein contains Pfam profile PF05383: La domain
		RAFL04-15-D03	At2g24200 / leucine aminopeptidase -related		RAFL04-15-D03 ,At2g24200 cytosol aminopeptidase identical to cytosol aminopeptidase SP:P30184 from [Arabidopsis thaliana]; contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain
		RAFL02-02-E01	At2g25900 / CCCH-type zinc finger protein -related		At2g25900 ,RAFL02-02-E01 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL07-18-L02	At2g44860 / 60S ribosomal protein L24, putative		RAFL07-18-L02 ,At2g44860 60S ribosomal protein L24, putative
		RAFL07-17-H23	At2g46060 / expressed protein		At2g46060 ,RAFL07-17-H23 transmembrane protein-related contains weak similarity to Swiss-Prot:Q9HCN3 transmembrane protein 8 precursor (M83 protein) [Homo sapiens]
		RAFL08-11-L01	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL08-11-L01 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL04-10-N15	At2g20725 / CAAX amino terminal protease family		At2g20725 ,RAFL04-10-N15 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein
		RAFL11-04-J10	At2g43050 / pectinesterase family		RAFL11-04-J10 ,At2g43050 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
		RAFL05-04-F15	At2g21860 / expressed protein		RAFL05-04-F15 ,At2g21860 violaxanthin de-epoxidase-related contains weak similarity to violaxanthin de-epoxidase precursor gi|1438875|gb|AAC49373
		RAFL06-13-N10	At2g22980 / serine carboxypeptidase -related		RAFL06-13-N10 ,At2g22980 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase I precursor (SP:P37890) from [Oryza sativa]
		RAFL05-10-J02	At2g21290 / expressed protein		At2g21290 ,RAFL05-10-J02 expressed protein
		RAFL11-04-F01	At2g18900 / transducin / WD-40 repeat protein family		RAFL11-04-F01 ,At2g18900 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) [Leishmania donovani]
		RAFL11-04-E24	At2g14200 / pseudogene, similar to gag-pol polyprotein (Ty1_Copia-element) (Glycine max) (GB:AAC64917)		RAFL11-04-E24 ,At2g14200 copia-like retrotransposon family has a 3.0e-133 P-value blast match to gb|AAO73523.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
		RAFL05-21-K20	At2g34760 / pseudogene, tubulin beta chain		RAFL05-21-K20 ,At2g34760 pseudogene, tubulin beta chain -related similar to beta-7 tubulin GI:416149 from [Zea mays]; blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). [Maize] {Zea mays}
		RAFL07-14-E01	At2g38080 / laccase (diphenol oxidase), putative		At2g38080 ,RAFL07-14-E01 laccase, putative / diphenol oxidase, putative similar to diphenol oxidase [Nicotiana tabacum][GI:1685087]
		RAFL05-16-A08	At2g16600 / cytosolic cyclophilin (ROC3)		At2g16600 ,RAFL05-16-A08 peptidyl-prolyl cis-trans isomerase, cytosolic / cyclophilin / rotamase (ROC3) identical to cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
		RAFL07-17-N22	At2g05380 / glycine-rich protein		RAFL07-17-N22 ,At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI:4206766
		RAFL09-13-F17	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL09-13-F17 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL05-19-K12	At2g06990 / RNA helicase (HUA enhancer 2/HEN2)		At2g06990 ,RAFL05-19-K12 HUA enhancer 2 (HEN2) / DExH-box RNA helicase, putative nearly identical to HUA enhancer 2 [Arabidopsis thaliana] GI:16024936
		RAFL06-08-O23	At2g18280 / F-box containing tubby family protein		RAFL06-08-O23 ,At2g18280 tubby-like protein 2 (TULP2) identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
		RAFL05-07-D14	At2g38380 / peroxidase		At2g38380 ,RAFL05-07-D14 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E identical to SP|P24102 Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic peroxidase E) {Arabidopsis thaliana}; identical to cDNA class III peroxidase ATPEa, GI:17530569
		RAFL09-18-N20	At2g40940 / ethylene response sensor (ERS)		RAFL09-18-N20 ,At2g40940 ethylene response sensor / ethylene-responsive sensor (ERS) identical to ethylene response sensor (ERS) [Arabidopsis thaliana] GI:1046225
		RAFL04-13-A22	At2g40765 / expressed protein		RAFL04-13-A22 ,At2g40765 expressed protein
	2_16800001_17100000				3	237	11	4412	0.03215115	0.3215115	10
		RAFL04-16-O18	At2g40360 / transducin / WD-40 repeat protein family		At2g40360 ,RAFL04-16-O18 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus]
		RAFL09-18-N20	At2g40940 / ethylene response sensor (ERS)		RAFL09-18-N20 ,At2g40940 ethylene response sensor / ethylene-responsive sensor (ERS) identical to ethylene response sensor (ERS) [Arabidopsis thaliana] GI:1046225
		RAFL04-13-A22	At2g40765 / expressed protein		RAFL04-13-A22 ,At2g40765 expressed protein
	1_27900001_28200000				3	237	11	4412	0.03215115	0.3215115	10
		RAFL07-10-E01	At1g75670 / expressed protein		RAFL07-10-E01 ,At1g75670 expressed protein similar to DNA-dependent RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43) (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
		RAFL02-09-B24	At1g75340 / expressed protein		At1g75340 ,RAFL02-09-B24 zinc finger (CCCH-type) family protein weak similarity to Nucleoporin NUP42 (Nuclear pore protein NUP42) (Swiss-Prot:P49686) [Saccharomyces cerevisiae]; contains Pfam profile PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL05-03-A24	At1g76030 / vacuolar ATP synthase subunit B		RAFL05-03-A24 ,At1g76030 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit identical to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}
	1_16800001_17100000				2	238	4	4419	0.034489654	0.13795862	4
		RAFL05-08-C05	At1g47420 / expressed protein		At1g47420 ,RAFL05-08-C05 expressed protein identical to hypothetical protein GB:AAD46040 GI:5668814 from [Arabidopsis thaliana]
		RAFL05-19-J05	At1g47260 / transferase hexapeptide repeat family		At1g47260 ,RAFL05-19-J05 bacterial transferase hexapeptide repeat-containing protein contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats)
	4_15900001_16200000				3	237	13	4410	0.045870684	0.45870686	10
		RAFL05-21-L13	At4g35880 / expressed protein		RAFL05-21-L13 ,At4g35880 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141
		RAFL06-11-K08	At4g35830 / aconitate hydratase (citrate hydro-lyase/aconitase/ACO) (cytoplasmic)		At4g35830 ,RAFL06-11-K08 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) identical to SP|Q42560 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Arabidopsis thaliana}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain
		RAFL06-11-I04	At4g35750 / expressed protein		RAFL06-11-I04 ,At4g35750 Rho-GTPase-activating protein-related contains weak similarity to Rho-GTPase-activating protein 1 (GTPase-activating protein rhoOGAP) (Rho-related small GTPase protein activator) (CDC42 GTPase-activating protein) (p50-rhoGAP) (Swiss-Prot:Q07960) [Homo sapiens]
	1_20550001_20580000				2	238	5	4418	0.046670057	0.18668023	4
		RAFL07-11-O12	At1g56070 / elongation factor -related		RAFL07-11-O12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-17-N12	At1g56070 / elongation factor -related		RAFL04-17-N12 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	4_600001_900000				2	238	5	4418	0.046670057	0.28002036	6
		RAFL06-15-N06	At4g02010 / protein kinase family		RAFL06-15-N06 ,At4g02010 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL07-12-K16	At4g01750 / expressed protein		At4g01750 ,RAFL07-12-K16 expressed protein T15B16.8
Cluster:0-0					A	B	C	D	P	P'	N
	5_15090001_15120000				11	25	3	4624	3.840276E-22	1.5361104E-21	4
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
	5_15000001_15300000				11	25	7	4620	3.2917788E-20	2.633423E-19	8
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
	5_15000001_18000000				14	22	93	4534	1.1793967E-14	3.1843712E-13	27
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	1_24690001_24720000				4	32	5	4622	3.6700155E-7	1.1010047E-6	3
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	1_24600001_24900000				4	32	12	4615	5.1006496E-6	3.5704546E-5	7
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	2_4230001_4260000				2	34	0	4627	5.79606E-5	5.79606E-5	1
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
	2_4200001_4500000				2	34	0	4627	5.79606E-5	5.79606E-5	1
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
	Chromosome:5				18	18	999	3628	1.7040157E-4	0.0056232517	33
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL07-09-P04	At5g53140 / protein phosphatase 2C (PP2C), putative		RAFL07-09-P04 ,At5g53140 protein phosphatase 2C, putative / PP2C, putative
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-17-N17	At5g25460 / expressed protein		At5g25460 ,RAFL04-17-N17 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
		RAFL07-10-I15	At5g23060 / expressed protein		At5g23060 ,RAFL07-10-I15 expressed protein
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL04-09-K06	At5g20630 / germin-like protein (AtGER3)		RAFL04-09-K06 ,At5g20630 germin-like protein (GER3) identical to germin-like protein subfamily 3 member 3 [SP|P94072]
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	5_16500001_16800000				3	33	14	4613	2.668717E-4	0.0034693324	13
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	3_180001_210000				2	34	2	4625	3.443902E-4	0.0010331706	3
		RAFL06-13-B01	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-13-B01 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
		RAFL06-11-K17	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-11-K17 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
	5_16710001_16740000				2	34	2	4625	3.443902E-4	0.0010331706	3
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	1_24000001_27000000				5	31	119	4508	0.0023874678	0.06207416	26
		RAFL06-07-I02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-07-I02 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-09-L07	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-09-L07 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-14-C14	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL06-14-C14 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL11-03-H09	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL11-03-H09 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-08-C15	At1g72610 / germin-like protein (AtGER1)		RAFL06-08-C15 ,At1g72610 germin-like protein (GER1) identical to germin-like protein subfamily 3 member 1 SP|P94040; contains Pfam profile: PF01072 Germin family
	2_3000001_6000000				2	34	9	4618	0.003051236	0.024409888	8
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
	2_18570001_18600000				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL11-02-D19	At2g45180 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g45180 ,RAFL11-02-D19 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
	5_8820001_8850000				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL04-17-N17	At5g25460 / expressed protein		At5g25460 ,RAFL04-17-N17 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
	1_26970001_27000000				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL06-08-C15	At1g72610 / germin-like protein (AtGER1)		RAFL06-08-C15 ,At1g72610 germin-like protein (GER1) identical to germin-like protein subfamily 3 member 1 SP|P94040; contains Pfam profile: PF01072 Germin family
	3_4710001_4740000				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL09-06-D04	At3g14210 / myrosinase-associated protein, putative		RAFL09-06-D04 ,At3g14210 myrosinase-associated protein, putative similar to GB:CAA71238 from [Brassica napus]; contains Pfam profile:PF00657 Lipase/Acylhydrolase with GDSL-like motif
	3_1_300000				2	34	18	4609	0.010090805	0.15136206	15
		RAFL06-13-B01	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-13-B01 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
		RAFL06-11-K17	At3g01500 / carbonic anhydrase, chloroplast precursor		RAFL06-11-K17 ,At3g01500 carbonic anhydrase 1, chloroplast / carbonate dehydratase 1 (CA1) nearly identical to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}
	5_6960001_6990000				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL04-09-K06	At5g20630 / germin-like protein (AtGER3)		RAFL04-09-K06 ,At5g20630 germin-like protein (GER3) identical to germin-like protein subfamily 3 member 3 [SP|P94072]
	2_17070001_17100000				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL07-08-J03	At2g41090 / calmodulin-like calcium binding protein (CaBP-22)		RAFL07-08-J03 ,At2g41090 calmodulin-like calcium-binding protein, 22 kDa (CaBP-22) identical to SP|P30187 22 kDa calmodulin-like calcium-binding protein (CABP-22) [Arabidopsis thaliana]
	5_7710001_7740000				1	35	1	4626	0.0153827425	0.030765485	2
		RAFL07-10-I15	At5g23060 / expressed protein		At5g23060 ,RAFL07-10-I15 expressed protein
	1_29130001_29160000				1	35	2	4625	0.022987597	0.06896279	3
		RAFL05-18-K12	At1g78370 / glutathione transferase, putative		RAFL05-18-K12 ,At1g78370 glutathione S-transferase, putative similar to 2,4-D inducible glutathione S-transferase GI:2920666 from [Glycine max]
	4_16590001_16620000				1	35	3	4624	0.030535331	0.09160599	3
		RAFL07-10-M24	At4g37510 / expressed protein		At4g37510 ,RAFL07-10-M24 ribonuclease III family protein contains Pfam profile PF00636 RNase3 domain
	1_10350001_10380000				1	35	3	4624	0.030535331	0.122141324	4
		RAFL07-15-C21	At1g29660 / GDSL-motif lipase/hydrolase protein		RAFL07-15-C21 ,At1g29660 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL1 [Arabidopsis thaliana] GI:15054382; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
	5_16500001_16530000				1	35	3	4624	0.030535331	0.122141324	4
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
	1_15630001_15660000				1	35	3	4624	0.030535331	0.09160599	3
		RAFL05-16-M03	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-16-M03 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	5_21240001_21270000				1	35	5	4622	0.04546111	0.27276668	6
		RAFL07-09-P04	At5g53140 / protein phosphatase 2C (PP2C), putative		RAFL07-09-P04 ,At5g53140 protein phosphatase 2C, putative / PP2C, putative
Cluster:0-2					A	B	C	D	P	P'	N
	4_14880001_14910000				6	73	1	4583	1.3487995E-10	2.697599E-10	2
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
	4_14700001_15000000				6	73	7	4577	3.0488103E-8	2.4390482E-7	8
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
	1_11190001_11220000				4	75	0	4584	7.637009E-8	7.637009E-8	1
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
	1_10470001_10500000				5	74	6	4578	5.2435286E-7	2.6217642E-6	5
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
	1_2640001_2670000				3	76	0	4584	4.6826926E-6	4.6826926E-6	1
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
	1_11100001_11400000				4	75	6	4578	1.4838775E-5	1.03871425E-4	7
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
	1_20010001_20040000				3	76	1	4583	1.850166E-5	3.700332E-5	2
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
	1_19800001_20100000				5	74	16	4568	2.0219552E-5	2.6285416E-4	13
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	1_9000001_12000000				10	69	106	4478	2.0901884E-5	6.2705646E-4	30
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
	1_10200001_10500000				5	74	21	4563	6.1163635E-5	0.0010397818	17
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
	1_18000001_21000000				9	70	115	4469	2.1293285E-4	0.006387986	30
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	4_6480001_6510000				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL06-07-K01	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-07-K01 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
		RAFL06-16-J22	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-16-J22 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
	1_22080001_22110000				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
	1_18630001_18660000				2	77	0	4584	2.8345492E-4	2.8345492E-4	1
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
	1_19920001_19950000				2	77	1	4583	8.409994E-4	0.0016819988	2
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	Chromosome:1				32	47	1087	3497	0.0012182354	0.040201765	33
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-12-J08	At1g14345 / expressed protein		At1g14345 ,RAFL08-12-J08 expressed protein contains one transmembrane domain
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL02-02-L10	At1g03130 / photosystem I reaction center subunit II precursor -related		RAFL02-02-L10 ,At1g03130 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL08-09-H12	At1g75460 / protease -related		At1g75460 ,RAFL08-09-H12 ATP-dependent protease La (LON) domain-containing protein weak similarity to SP|P36774 ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus xanthus}; contains Pfam profile PF02190: ATP-dependent protease La (LON) domain
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	5_21750001_21780000				2	77	2	4582	0.0016634972	0.0049904916	3
		RAFL02-10-L11	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		RAFL02-10-L11 ,At5g54270 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL02-06-M22	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		At5g54270 ,RAFL02-06-M22 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	1_21900001_22200000				2	77	2	4582	0.0016634972	0.0049904916	3
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
	1_27600001_27900000				3	76	16	4568	0.0037301949	0.03730195	10
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	1_27630001_27660000				2	77	4	4580	0.0040679234	0.008135847	2
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	4_6300001_6600000				2	77	4	4580	0.0040679234	0.020339618	5
		RAFL06-07-K01	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-07-K01 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
		RAFL06-16-J22	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-16-J22 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
	4_12000001_15000000				8	71	146	4438	0.0042114104	0.12634231	30
		RAFL09-09-C13	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL09-09-C13 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL05-21-A21	At4g26850 / expressed protein		RAFL05-21-A21 ,At4g26850 expressed protein
		RAFL11-06-F06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-F06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL08-11-O04	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL08-11-O04 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL11-06-P03	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL11-06-P03 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-18-E18	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-18-E18 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL07-10-O06	At4g33010 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At4g33010 ,RAFL07-10-O06 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein
		RAFL05-17-G02	At4g27700 / rhodanese-like domain protein		At4g27700 ,RAFL05-17-G02 rhodanese-like domain-containing protein contains rhodanese-like domain PF00581
	5_5910001_5940000				2	77	5	4579	0.0056326813	0.011265363	2
		RAFL08-16-E05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL08-16-E05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-09-A21	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-09-A21 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
	1_18600001_18900000				2	77	6	4578	0.0074280417	0.05199629	7
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
	5_21600001_21900000				2	77	9	4575	0.014118112	0.11294489	8
		RAFL02-10-L11	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		RAFL02-10-L11 ,At5g54270 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL02-06-M22	At5g54270 / light-harvesting chlorophyll a/b binding protein, putative		At5g54270 ,RAFL02-06-M22 chlorophyll A-B binding protein / LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	3_17820001_17850000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-14-I05	At3g48200 / expressed protein		At3g48200 ,RAFL04-14-I05 expressed protein
	3_30001_60000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL06-13-I09	At3g01120 / cystathionine gamma-synthase -related		RAFL06-13-I09 ,At3g01120 cystathionine gamma-synthase, chloroplast / O-succinylhomoserine (Thiol)-lyase (CGS) identical to SP|P55217 Cystathionine gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana}
	3_18870001_18900000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL05-17-B17	At3g50820 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL05-17-B17 ,At3g50820 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative (PSBO2) identical to SP:Q9S841 Oxygen-evolving enhancer protein 1-2, chloroplast precursor (OEE1) [Arabidopsis thaliana]; strong similarity to SP|P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) {Arabidopsis thaliana}
	1_20670001_20700000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
	2_11040001_11070000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL09-06-E16	At2g26080 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		At2g26080 ,RAFL09-06-E16 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P26969 Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) {Pisum sativum}; contains Pfam profile PF02347: Glycine cleavage system P-protein
	2_13710001_13740000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-16-I19	At2g32480 / protease, putative		RAFL04-16-I19 ,At2g32480 membrane-associated zinc metalloprotease, putative similar to Hypothetical zinc metalloprotease All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.} Pfam PF00595: PDZ domain (Also known as DHR or GLGF); contains TIGRFAM TIGR00054: membrane-associated zinc metalloprotease, putative
	1_27720001_27750000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
	1_750001_780000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL02-02-L10	At1g03130 / photosystem I reaction center subunit II precursor -related		RAFL02-02-L10 ,At1g03130 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
	2_11190001_11220000				1	78	0	4584	0.016941883	0.016941883	1
		RAFL05-03-B18	At2g26500 / expressed protein		RAFL05-03-B18 ,At2g26500 cytochrome b6f complex subunit (petM), putative nearly identical to cytochrome b6f complex subunit (GI:3090403) [Arabidopsis thaliana]; alternative splice forms exist
	1_2400001_2700000				3	76	32	4552	0.020758273	0.33213237	16
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
	1_3900001_4200000				2	77	15	4569	0.032697435	0.35967177	11
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
	2_17700001_17730000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-18-J03	At2g42690 / lipase, putative		RAFL05-18-J03 ,At2g42690 lipase, putative similar to lipase [Dianthus caryophyllus] GI:4103627; contains Pfam profile PF01764: Lipase
	1_9960001_9990000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
	1_4140001_4170000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
	5_18840001_18870000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-16-N08	At5g47110 / Lil3 protein		RAFL04-16-N08 ,At5g47110 lil3 protein, putative similar to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
	4_12450001_12480000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-21-A21	At4g26850 / expressed protein		RAFL05-21-A21 ,At4g26850 expressed protein
	4_7830001_7860000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-15-A04	At4g15560 / DEF (CLA1) protein		At4g15560 ,RAFL04-15-A04 1-deoxy-D-xylulose 5-phosphate synthase, putative / 1-deoxyxylulose-5-phosphate synthase, putative / DXP-synthase, putative (DEF) (CLA1) identical to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate synthase, chloroplast precursor (EC 4.1.3.37) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF (deficient in photosynthesis) protein [Arabidopsis thaliana] GI:1399261
	1_19020001_19050000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
	1_4890001_4920000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL08-12-J08	At1g14345 / expressed protein		At1g14345 ,RAFL08-12-J08 expressed protein contains one transmembrane domain
	3_23070001_23100000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL05-18-G05	At3g62410 / CP12 protein precursor-related protein		RAFL05-18-G05 ,At3g62410 CP12 domain-containing protein contains Pfam domain PF02672: CP12 domain
	3_17460001_17490000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-17-P09	At3g47430 / expressed protein		At3g47430 ,RAFL04-17-P09 peroxisomal biogenesis factor 11 family protein / PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11)
	3_2700001_2730000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-09-F16	At3g08940 / chlorophyll a/b-binding protein -related		At3g08940 ,RAFL06-09-F16 chlorophyll A-B binding protein (LHCB4.2) contains Pfam profile: PF00504 chlorophyll A-B binding protein; identical to Lhcb4.2 protein GB:AAD28774 [Arabidopsis thaliana]
	3_5460001_5490000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-19-B03	At3g16140 / photosystem I subunit VI precursor		At3g16140 ,RAFL04-19-B03 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH1) identical to SP|Q9SUI7; similar to PSI-H precursor [Nicotiana sylvestris] GI:407353; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
	3_9750001_9780000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-16-E17	At3g26570 / phosphate transporter -related		RAFL07-16-E17 ,At3g26570 phosphate transporter family protein contains Pfam profile: PF01384 phosphate transporter family
	5_26160001_26190000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL06-08-B20	At5g66190 / ferredoxin--NADP(+) reductase (adrenodoxin reductase), putative		At5g66190 ,RAFL06-08-B20 ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP|P10933, {Mesembryanthemum crystallinum} SP|P41343, {Spinacia oleracea} SP|P00455; identical to cDNA ferredoxin-NADP+ reductase precursor (petH) GI:5730138
	2_18600001_18630000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-12-I18	At2g45290 / transketolase precursor -related		At2g45290 ,RAFL07-12-I18 transketolase, putative strong similarity to transketolase 1 [Capsicum annuum] GI:3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain, PF00456: Transketolase, thiamine diphosphate binding domain
	4_2670001_2700000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL03-06-D05	At4g05180 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL03-06-D05 ,At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
	2_12930001_12960000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL09-17-I24	At2g30510 / unknown similar to AGI		RAFL09-17-I24 ,At2g30510 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL09-17-I24
	1_4080001_4110000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
	3_19260001_19290000				1	78	1	4583	0.03360031	0.06720062	2
		RAFL07-10-L18	At3g51950 / RNA recognition motif (RRM) - containing protein		RAFL07-10-L18 ,At3g51950 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
	4_1200001_1230000				1	78	2	4582	0.049979966	0.1499399	3
		RAFL07-15-A19	At4g02770 / photosystem I reaction center subunit II precursor -related		RAFL07-15-A19 ,At4g02770 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD1) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
	2_19410001_19440000				1	78	2	4582	0.049979966	0.1499399	3
		RAFL05-16-J06	At2g47450 / chlorophyll a/b binding protein harvesting-organelle specific protein CAO		At2g47450 ,RAFL05-16-J06 chloroplast signal recognition particle component (CAO) nearly identical to CAO [Arabidopsis thaliana] GI:4102582
	4_11820001_11850000				1	78	2	4582	0.049979966	0.1499399	3
		RAFL04-09-K07	At4g25050 / acyl carrier protein family		RAFL04-09-K07 ,At4g25050 acyl carrier family protein / ACP family protein similar to Acyl carrier protein, chloroplast precursor from {Spinacia oleracea} SP|P23235, {Casuarina glauca} SP|P93092; contains InterPro accession IPR003881: Isochorismatase
	5_23250001_23280000				1	78	2	4582	0.049979966	0.1499399	3
		RAFL06-11-B13	At5g58250 / unknown protein (sp|P72777) -related		At5g58250 ,RAFL06-11-B13 expressed protein
	3_4800001_4830000				1	78	2	4582	0.049979966	0.09995993	2
		RAFL06-07-N01	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL06-07-N01 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
	4_12780001_12810000				1	78	2	4582	0.049979966	0.1499399	3
		RAFL05-17-G02	At4g27700 / rhodanese-like domain protein		At4g27700 ,RAFL05-17-G02 rhodanese-like domain-containing protein contains rhodanese-like domain PF00581
Cluster:1-1					A	B	C	D	P	P'	N
	5_24870001_24900000				2	103	0	4558	5.023252E-4	5.023252E-4	1
		RAFL09-10-P21	At5g62700 / tubulin beta-2/beta-3 chain (TUB3)		At5g62700 ,RAFL09-10-P21 tubulin beta-2/beta-3 chain (TUB3) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana}
		RAFL09-14-F08	At5g62670 / ATPase, plasma membrane-type (proton pump), putative		At5g62670 ,RAFL09-14-F08 ATPase, plasma membrane-type, putative / proton pump, putative strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia [SP|Q08435, SP|Q08436], Lycopersicon esculentum [GI:5901757, SP|P22180], Solanum tuberosum [GI:435003]; contains InterPro accession IPR001757: ATPase, E1-E2 type
	5_16080001_16110000				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL05-17-L14	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL05-17-L14 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
		RAFL11-03-K10	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL11-03-K10 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
	1_23370001_23400000				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL04-15-B06	At1g63940 / monodehydroascorbate reductase, putative		RAFL04-15-B06 ,At1g63940 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
		RAFL07-07-K13	At1g63940 / monodehydroascorbate reductase, putative		At1g63940 ,RAFL07-07-K13 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
	3_5100001_5130000				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL09-12-K18	At3g15190 / chloroplast 30S ribosomal protein S20, putative		RAFL09-12-K18 ,At3g15190 chloroplast 30S ribosomal protein S20, putative contains Pfam profile: PF01649 ribosomal protein S20
		RAFL04-16-I22	At3g15190 / chloroplast 30S ribosomal protein S20, putative		At3g15190 ,RAFL04-16-I22 chloroplast 30S ribosomal protein S20, putative contains Pfam profile: PF01649 ribosomal protein S20
	5_3900001_4200000				3	102	15	4543	0.007078421	0.09201947	13
		RAFL09-12-K02	At5g13120 / peptidyl-prolyl isomerase protein		At5g13120 ,RAFL09-12-K02 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
		RAFL08-17-F04	At5g13010 / RNA helicase, putative		At5g13010 ,RAFL08-17-F04 RNA helicase, putative similar to DEAH-box RNA helicase [Chlamydomonas reinhardtii] GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL09-09-H14	At5g12250 / tubulin beta-6 chain (TUB6)		RAFL09-09-H14 ,At5g12250 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
	5_2400001_2700000				2	103	6	4552	0.012871708	0.06435854	5
		RAFL04-14-F18	At5g08260 / serine carboxypeptidase II -related		RAFL04-14-F18 ,At5g08260 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; carboxypeptidase D - Triticum aestivum, PIR:A29639
		RAFL05-07-L19	At5g07690 / myb family transcription factor		RAFL05-07-L19 ,At5g07690 myb family transcription factor (MYB29) similar to myb transcription factor GI:3941436 from [Arabidopsis thaliana]
	1_23100001_23400000				2	103	7	4551	0.016308056	0.09784834	6
		RAFL04-15-B06	At1g63940 / monodehydroascorbate reductase, putative		RAFL04-15-B06 ,At1g63940 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
		RAFL07-07-K13	At1g63940 / monodehydroascorbate reductase, putative		At1g63940 ,RAFL07-07-K13 monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]
	1_27780001_27810000				2	103	7	4551	0.016308056	0.114156395	7
		RAFL07-16-O21	At1g74970 / ribosomal protein S9 -related		At1g74970 ,RAFL07-16-O21 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946
		RAFL06-11-O06	At1g74940 / senescence-associated protein -related		RAFL06-11-O06 ,At1g74940 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana]
	4_7200001_7500000				2	103	8	4550	0.02008839	0.14061873	7
		RAFL06-14-F04	At4g14890 / ferredoxin family		RAFL06-14-F04 ,At4g14890 ferredoxin family protein similar to SP|P00252 Ferredoxin I from Nostoc muscorum, SP|P00248 Ferredoxin from Mastigocladus laminosus, SP|P00244 Ferredoxin I from Aphanizomenon flos-aquae; contains Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding domain
		RAFL07-08-F02	At4g14360 / dehydration-induced protein-related		At4g14360 ,RAFL07-08-F02 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
	3_19470001_19500000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL09-18-L02	At3g52500 / expressed protein		At3g52500 ,RAFL09-18-L02 aspartyl protease family protein contains Pfam PF00026: eukaryotic aspartyl protease
	1_20220001_20250000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL11-09-E21	At1g55330 / arabinogalactan-protein (AGP21)		RAFL11-09-E21 ,At1g55330 arabinogalactan-protein (AGP21)
	5_60001_90000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL06-07-E03	At5g01220 / UDP-sulfoquinovose:DAG sulfoquinovosyltransferase (sulfolipid synthase) (SQD2)		RAFL06-07-E03 ,At5g01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2) identical to GI:20302857
	2_11310001_11340000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-10-K15	At2g26730 / leucine-rich repeat transmembrane protein kinase, putative		At2g26730 ,RAFL07-10-K15 leucine-rich repeat transmembrane protein kinase, putative
	5_24930001_24960000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-14-M06	At5g62890 / permease 1 - like protein		RAFL04-14-M06 ,At5g62890 permease, putative similar to permease 1 [Zea mays] GI:7844006; contains Pfam profile: PF00860 Xanthine/uracil permeases family; identical to cDNA putative permease 1 (MQB2.21) GI:21326024
	2_2310001_2340000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-H24	At2g05990 / enoyl-(acyl-carrier protein) reductase (NADH) (enr-A), putative		RAFL07-08-H24 ,At2g05990 enoyl-[acyl-carrier protein] reductase [NADH], chloroplast, putative / NADH-dependent enoyl-ACP reductase, putative strong similarity to enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030 from [Brassica napus]
	3_15660001_15690000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-10-C01	At3g43800 / glutathione transferase, putative		At3g43800 ,RAFL04-10-C01 glutathione S-transferase, putative glutathione transferase, papaya, PIR:T09781
	3_8850001_8880000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-19-J04	At3g24430 / mrp protein -related		RAFL05-19-J04 ,At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function
	3_2370001_2400000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL02-08-P16	At3g07470 / expressed protein		At3g07470 ,RAFL02-08-P16 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
	3_17640001_17670000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-10-G07	At3g47860 / expressed protein		At3g47860 ,RAFL04-10-G07 apolipoprotein D-related contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot:P51910) [Mus musculus]
	4_9420001_9450000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-17-N14	At4g19120 / ERD3 protein		At4g19120 ,RAFL04-17-N14 early-responsive to dehydration stress protein (ERD3) identical to ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase; identical to cDNA ERD3 GI:15320409
	4_7230001_7260000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-F02	At4g14360 / dehydration-induced protein-related		At4g14360 ,RAFL07-08-F02 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
	5_9660001_9690000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-13-J16	At5g27560 / expressed protein		RAFL04-13-J16 ,At5g27560 expressed protein hypothetical protein slr1702 - Synechocystis sp., PIR:S75312
	1_11070001_11100000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL09-13-M20	At1g31070 / UDP-N-acetylglucosamine pyrophosphorylase-related protein		At1g31070 ,RAFL09-13-M20 UDP-N-acetylglucosamine pyrophosphorylase-related low similarity to SP|P43123 UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) {Saccharomyces cerevisiae}
	5_4110001_4140000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL08-17-F04	At5g13010 / RNA helicase, putative		At5g13010 ,RAFL08-17-F04 RNA helicase, putative similar to DEAH-box RNA helicase [Chlamydomonas reinhardtii] GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
	5_4620001_4650000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-07-P17	At5g14370 / expressed protein		RAFL07-07-P17 ,At5g14370 expressed protein
	5_2430001_2460000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-07-L19	At5g07690 / myb family transcription factor		RAFL05-07-L19 ,At5g07690 myb family transcription factor (MYB29) similar to myb transcription factor GI:3941436 from [Arabidopsis thaliana]
	4_15360001_15390000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-17-H20	At4g34290 / expressed protein		At4g34290 ,RAFL04-17-H20 SWIB complex BAF60b domain-containing protein contains Pfam profile PF02201: BAF60b domain of the SWIB complex
	5_20730001_20760000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-08-N18	At5g51750 / subtilisin-like serine protease		At5g51750 ,RAFL07-08-N18 subtilase family protein similar to subtilisin-like protease GI:3687307 from [Lycopersicon esculentum]
	5_14010001_14040000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-14-E07	At5g36290 / transmembrane protein FT27/PFT27-related		At5g36290 ,RAFL07-14-E07 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016
	4_14550001_14580000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-12-O23	At4g32330 / expressed protein		RAFL04-12-O23 ,At4g32330 expressed protein
	5_3870001_3900000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-10-F16	At5g12050 / serine rich protein -related		RAFL05-10-F16 ,At5g12050 expressed protein
	3_8040001_8070000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-14-G15	At3g22780 / DNA binding protein -related		RAFL04-14-G15 ,At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425
	3_16440001_16470000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL08-12-C18	At3g44990 / xyloglucan endotransglycosylase, putative		At3g44990 ,RAFL08-12-C18 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
	1_21570001_21600000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-16-M15	At1g59710 / expressed protein		At1g59710 ,RAFL07-16-M15 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569
	3_5850001_5880000				1	104	0	4558	0.022517692	0.022517692	1
		RAFL05-16-C11	At3g17170 / (RFC3) RPS6-related protein		At3g17170 ,RAFL05-16-C11 ribosomal protein S6 family protein (RFC3) annotation temporarily based on supporting cDNA gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166 and Pfam PF01250 profiles ribosomal protein S6.
	3_6000001_9000000				7	98	123	4435	0.026404485	0.7393256	28
		RAFL05-17-A02	At3g20810 / expressed protein		At3g20810 ,RAFL05-17-A02 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain PF02373: jmjC domain
		RAFL07-14-J18	At3g23530 / cyclopropane synthase, putative		RAFL07-14-J18 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL09-10-N16	At3g18000 / phosphoethanolamine N-methyltransferase, putative		RAFL09-10-N16 ,At3g18000 phosphoethanolamine N-methyltransferase 1 / PEAMT 1 (NMT1) identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (SP:Q9FR44){Arabidopsis thaliana}; strong similarity to phosphoethanolamine N-methyltransferase from [Spinacia oleracea] GI:7407189, [Triticum aestivum] GI:17887465; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family
		RAFL05-19-J04	At3g24430 / mrp protein -related		RAFL05-19-J04 ,At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function
		RAFL04-14-G15	At3g22780 / DNA binding protein -related		RAFL04-14-G15 ,At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425
		RAFL07-18-P15	At3g22120 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At3g22120 ,RAFL07-18-P15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein Lycopersicon esculentum, proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL05-17-H07	At3g17840 / leucine-rich repeat transmembrane protein kinase, putative		At3g17840 ,RAFL05-17-H07 leucine-rich repeat transmembrane protein kinase, putative similar to receptor kinase GB:AAA33715 from [Petunia integrifolia]
	5_2100001_2400000				2	103	10	4548	0.028613875	0.25752488	9
		RAFL04-15-E20	At5g07240 / expressed protein		At5g07240 ,RAFL04-15-E20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
		RAFL04-10-L09	At5g07030 / nucleoid DNA-binding-related protein		RAFL04-10-L09 ,At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease
	5_15900001_16200000				2	103	11	4547	0.033326875	0.2999419	9
		RAFL05-17-L14	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL05-17-L14 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
		RAFL11-03-K10	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL11-03-K10 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
	3_20100001_20400000				2	103	13	4545	0.04357712	0.52292544	12
		RAFL09-09-I17	At3g54920 / polysaccharide lyase family 1 (pectate lyase)		At3g54920 ,RAFL09-09-I17 pectate lyase, putative / powdery mildew susceptibility protein (PMR6) identical to powdery mildew susceptibility protein [Arabidopsis thaliana] GI:22506901; similar to pectate lyase 2 GP:6606534 from [Musa acuminata]
		RAFL05-16-C09	At3g54400 / nucleoid DNA-binding - like protein		RAFL05-16-C09 ,At3g54400 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease
	5_4140001_4170000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-12-K02	At5g13120 / peptidyl-prolyl isomerase protein		At5g13120 ,RAFL09-12-K02 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
	5_24210001_24240000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-13-P05	At5g60920 / phytochelatin synthetase - like protein		At5g60920 ,RAFL09-13-P05 phytochelatin synthetase, putative / COBRA cell expansion protein COB, putative similar to phytochelatin synthetase GI:29570314; similar to GB:AAK56072; identified in Roudier, et al, Plant Phys. (2002) 130:538-548 (PMID:12376623); identical to cDNA putative phytochelatin synthetase GI:3559804; contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region
	4_10950001_10980000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-09-K20	At4g22880 / leucoanthocyanidin dioxygenase (anthocyanidin synthase) (LDOX/ANS), putative		At4g22880 ,RAFL06-09-K20 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative similar to SP|P51091 [Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase superfamily
	5_17670001_17700000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL11-02-K06	At5g44580 / expressed protein		At5g44580 ,RAFL11-02-K06 expressed protein
	1_10290001_10320000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-10-N13	At1g29470 / dehydration-induced protein-related		RAFL07-10-N13 ,At1g29470 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
	1_29940001_29970000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-12-G04	At1g80560 / 3-isopropylmalate dehydrogenase, chloroplast, putative		At1g80560 ,RAFL07-12-G04 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102 SP|P29102 from [Brassica napus]
	5_19050001_19080000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-08-K13	At5g47780 / glycosyltransferase family 8		At5g47780 ,RAFL07-08-K13 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8; strong similarity to unknown protein (emb|CAB71043.1)
	3_20130001_20160000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-16-C09	At3g54400 / nucleoid DNA-binding - like protein		RAFL05-16-C09 ,At3g54400 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease
	2_8250001_8280000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-09-G02	At2g19170 / subtilisin-like serine protease		At2g19170 ,RAFL07-09-G02 subtilase family protein contains similarity to meiotic serine proteinase TMP GI:6468325 from [Lycopersicon esculentum]
	5_16350001_16380000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-15-O16	At5g41670 / 6-phosphogluconate dehydrogenase		At5g41670 ,RAFL06-15-O16 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate
	2_11730001_11760000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-04-M06	At2g27680 / aldo/keto reductase family		At2g27680 ,RAFL05-04-M06 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
	4_11700001_11730000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-20-C13	At4g24750 / expressed protein		RAFL04-20-C13 ,At4g24750 expressed protein
	2_14250001_14280000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-19-N24	At2g33850 / expressed protein		At2g33850 ,RAFL04-19-N24 expressed protein contains 1 transmembrane domain; similar to Protein E6 (Swiss-Prot:Q01197) [Gossypium hirsutum]
	5_4800001_4830000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL03-01-B05	At5g14910 / heavy-metal-associated domain-containing protein		RAFL03-01-B05 ,At5g14910 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain
	4_6390001_6420000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-13-A12	At4g12550 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At4g12550 ,RAFL06-13-A12 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234; identical to cDNA AIR1 mRNA, partial cds GI:3695016
	2_480001_510000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-12-M13	At2g02070 / C2H2-type zinc finger protein -related		At2g02070 ,RAFL07-12-M13 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
	5_8670001_8700000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL08-08-K02	At5g25190 / ethylene responsive element binding protein, putative		At5g25190 ,RAFL08-08-K02 ethylene-responsive element-binding protein, putative ethylene responsive element binding protein homolog, Stylosanthes hamata, EMBL:U91857
	5_2250001_2280000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-15-E20	At5g07240 / expressed protein		At5g07240 ,RAFL04-15-E20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
	5_2160001_2190000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL04-10-L09	At5g07030 / nucleoid DNA-binding-related protein		RAFL04-10-L09 ,At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease
	2_8400001_8430000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-09-P04	At2g19590 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At2g19590 ,RAFL05-09-P04 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to ACC oxidase [Cucumis melo][GI:1183898]
	1_3870001_3900000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-12-M07	At1g11580 / pectin methylesterase, putative		RAFL09-12-M07 ,At1g11580 pectin methylesterase, putative similar to pectin methylesterase GI:1617583 from [Lycopersicon esculentum]
	4_14160001_14190000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL06-11-F19	At4g31360 / expressed protein		RAFL06-11-F19 ,At4g31360 expressed protein
	4_17250001_17280000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-16-C15	At4g39350 / cellulose synthase, catalytic subunit (Ath-A)		At4g39350 ,RAFL07-16-C15 cellulose synthase, catalytic subunit (Ath-A) identical to gi:2827141
	2_15210001_15240000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL05-18-K13	At2g36430 / expressed protein		At2g36430 ,RAFL05-18-K13 expressed protein contains Pfam profile PF03140: Plant protein of unknown function
	5_1650001_1680000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL07-15-N04	At5g05580 / omega-3 fatty acid desaturase, chloroplast precursor (FAD8)		At5g05580 ,RAFL07-15-N04 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive (FAD8) identical to SP:48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) {Arabidopsis thaliana}; contains Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI:1030694
	3_930001_960000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL11-05-E10	At3g03770 / leucine-rich repeat transmembrane protein kinase, putative		At3g03770 ,RAFL11-05-E10 leucine-rich repeat transmembrane protein kinase, putative may contain C-terminal ser/thr protein kinase domain, similar to serine/threonine protein kinase Pto GB:AAB47421 [Lycopersicon esculentum]
	1_21870001_21900000				1	104	1	4557	0.04453306	0.08906612	2
		RAFL09-09-H06	At1g60260 / glycosyl hydrolase family 1		At1g60260 ,RAFL09-09-H06 pseudogene, glycosyl hydrolase family 1 contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]; blastp match of 60% identity and 6.4e-121 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}
Cluster:10-2					A	B	C	D	P	P'	N
	1_22800001_23100000				4	105	10	4544	2.3608547E-4	0.0023608548	10
		RAFL08-15-K01	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-15-K01 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-03-G20	At1g62600 / flavin-containing monooxygenase (FMO) family		RAFL05-03-G20 ,At1g62600 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase 2 from Cavia porcellus [SP|P36366]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
		RAFL04-12-E05	At1g63010 / expressed protein		At1g63010 ,RAFL04-12-E05 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
		RAFL08-13-K06	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-13-K06 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
	1_22830001_22860000				3	106	3	4551	2.3612964E-4	7.083889E-4	3
		RAFL08-15-K01	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-15-K01 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
		RAFL05-03-G20	At1g62600 / flavin-containing monooxygenase (FMO) family		RAFL05-03-G20 ,At1g62600 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase 2 from Cavia porcellus [SP|P36366]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
		RAFL08-13-K06	At1g62660 / glycosyl hydrolase family 32		At1g62660 ,RAFL08-13-K06 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854
	4_5940001_5970000				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
	1_17340001_17370000				2	107	0	4554	5.4151757E-4	5.4151757E-4	1
		RAFL06-15-O23	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL06-15-O23 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
		RAFL07-07-N10	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL07-07-N10 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
	4_5700001_6000000				3	106	5	4549	6.388735E-4	0.003833241	6
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL05-09-D16	At4g11220 / expressed protein		At4g11220 ,RAFL05-09-D16 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
	1_24870001_24900000				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL08-11-D22	At1g67360 / stress related protein -related		At1g67360 ,RAFL08-11-D22 rubber elongation factor (REF) family protein contains Pfam profile: PF05755 rubber elongation factor protein (REF)
		RAFL11-12-J24	At1g67360 / stress related protein -related		RAFL11-12-J24 ,At1g67360 rubber elongation factor (REF) family protein contains Pfam profile: PF05755 rubber elongation factor protein (REF)
	5_4410001_4440000				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL04-09-C09	At5g13750 / transporter-related protein		At5g13750 ,RAFL04-09-C09 transporter-related
		RAFL06-09-O18	At5g13750 / transporter-related protein		At5g13750 ,RAFL06-09-O18 transporter-related
	1_2310001_2340000				2	107	1	4553	0.0015996902	0.0031993804	2
		RAFL11-09-C12	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-09-C12 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL11-01-F16	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-01-F16 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
	3_18150001_18180000				2	107	2	4552	0.0031505034	0.009451509	3
		RAFL08-12-E20	At3g48990 / AMP-dependent synthetase and ligase family		At3g48990 ,RAFL08-12-E20 AMP-dependent synthetase and ligase family protein similar to peroxisomal-coenzyme A synthetase (FAT2) [gi:586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI:20799714
		RAFL09-06-C22	At3g48990 / AMP-dependent synthetase and ligase family		At3g48990 ,RAFL09-06-C22 AMP-dependent synthetase and ligase family protein similar to peroxisomal-coenzyme A synthetase (FAT2) [gi:586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI:20799714
	1_17100001_17400000				2	107	3	4551	0.005170766	0.020683063	4
		RAFL06-15-O23	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL06-15-O23 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
		RAFL07-07-N10	At1g48100 / polygalacturonase, putative		At1g48100 ,RAFL07-07-N10 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
	3_6090001_6120000				2	107	3	4551	0.005170766	0.020683063	4
		RAFL08-13-J12	At3g17800 / expressed protein		At3g17800 ,RAFL08-13-J12 expressed protein
		RAFL05-05-N22	At3g17810 / dehydrogenase -related		RAFL05-05-N22 ,At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase
	1_25200001_25500000				2	107	4	4550	0.007638084	0.038190417	5
		RAFL05-01-L22	At1g68620 / expressed protein		RAFL05-01-L22 ,At1g68620 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
		RAFL05-04-N11	At1g68530 / very-long-chain fatty acid condensing enzyme (CUT1)		At1g68530 ,RAFL05-04-N11 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999))
	5_4200001_4500000				3	106	16	4538	0.009166159	0.100827746	11
		RAFL09-06-F02	At5g13760 / expressed protein		RAFL09-06-F02 ,At5g13760 expressed protein similar to unknown protein (gb AAF63775.1)
		RAFL04-09-C09	At5g13750 / transporter-related protein		At5g13750 ,RAFL04-09-C09 transporter-related
		RAFL06-09-O18	At5g13750 / transporter-related protein		At5g13750 ,RAFL06-09-O18 transporter-related
	3_6000001_6300000				3	106	17	4537	0.010602768	0.14843874	14
		RAFL08-13-J12	At3g17800 / expressed protein		At3g17800 ,RAFL08-13-J12 expressed protein
		RAFL05-05-N22	At3g17810 / dehydrogenase -related		RAFL05-05-N22 ,At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase
		RAFL05-03-M03	At3g18035 / expressed protein		At3g18035 ,RAFL05-03-M03 histone H1/H5 family protein contains Pfam domain, PF00538: linker histone H1 and H5 family;similar to HMG I/Y like protein (GI:15706274) [Glycine max];similar to HMR1 protein (GI:4218141) [Antirrhinum majus]; similar to high mobility group protein (GI:1483173) [Canavalia gladiata]
	4_3000001_6000000				4	105	35	4519	0.012387993	0.24775985	20
		RAFL09-10-N09	At4g11570 / haloacid dehalogenase-like hydrolase family		RAFL09-10-N09 ,At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
		RAFL05-09-D16	At4g11220 / expressed protein		At4g11220 ,RAFL05-09-D16 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
		RAFL08-15-F02	At4g11570 / haloacid dehalogenase-like hydrolase family		At4g11570 ,RAFL08-15-F02 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI:10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase
	4_10800001_11100000				2	107	6	4548	0.013828159	0.08296896	6
		RAFL05-14-C11	At4g22820 / zinc finger -related protein		At4g22820 ,RAFL05-14-C11 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
		RAFL09-07-B11	At4g23050 / serine/threonine kinase -related		At4g23050 ,RAFL09-07-B11 protein kinase, putative similar to MAP3K delta-1 protein kinase [Arabidopsis thaliana] gi|2253010|emb|CAA74591; contains Pfam PF00069 Protein kinase domain and PF00989 PAS domain
	1_2100001_2400000				3	106	22	4532	0.019661572	0.25560045	13
		RAFL11-09-C12	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-09-C12 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL11-01-F16	At1g07600 / metallothionein-related protein		At1g07600 ,RAFL11-01-F16 metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) identical to Metallothionein-like protein 1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis thaliana)
		RAFL05-07-D13	At1g07430 / protein phosphatase 2C (PP2C), putative		RAFL05-07-D13 ,At1g07430 protein phosphatase 2C, putative / PP2C, putative similar to GB:CAB90633 from [Fagus sylvatica]
	4_1800001_2100000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-15-N09	At4g04020 / plastid-lipid associated protein PAP/fibrillin, putative		RAFL07-15-N09 ,At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from [Brassica rapa], fibrillin [Brassica napus] GI:4139097; contains Pfam profile PF04755: PAP_fibrillin
	3_630001_660000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-11-C05	At3g02875 / IAA-amino acid hydrolase 1 (ILR1)		At3g02875 ,RAFL05-11-C05 IAA-amino acid hydrolase 1 (ILR1) identical to IAA-amino acid hydrolase 1 (ILR1) [Arabidopsis thaliana] SWISS-PROT:P54968
	2_12030001_12060000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-08-O13	At2g28320 / expressed protein		RAFL07-08-O13 ,At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein contains Pfam profiles PF01852: START domain, PF00169: PH domain
	1_21180001_21210000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-07-O19	At1g58270 / expressed protein		RAFL09-07-O19 ,At1g58270 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
	1_29460001_29490000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-09-N17	At1g79270 / expressed protein		RAFL05-09-N17 ,At1g79270 expressed protein contains Pfam profile PF04146: YT521-B-like family
	1_7980001_8010000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-13-M17	At1g22640 / myb family transcription factor		At1g22640 ,RAFL06-13-M17 myb family transcription factor (MYB4) similar to myb-related protein GI:1020155 from [Arabidopsis thaliana]
	3_15000001_15300000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-J05	At3g43190 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At3g43190 ,RAFL05-07-J05 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1)
	4_16680001_16710000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-15-C22	At4g37760 / squalene monooxygenase (squalene epoxidase) (SE), putative		RAFL08-15-C22 ,At4g37760 squalene monooxygenase, putative / squalene epoxidase, putative similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
	3_1110001_1140000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-09-L03	At3g04240 / glycosyltransferase - related		At3g04240 ,RAFL09-09-L03 O-linked N-acetyl glucosamine transferase, putative similar to O-GlcNAc transferase, Homo sapiens [SP|O15294], Rattus norvegicus [SP|P56558]; contains Pfam profile PF00515: TPR Domain; identical to cDNA GI:18139886
	5_13380001_13410000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL03-03-L03	At5g35460 / expressed protein		At5g35460 ,RAFL03-03-L03 expressed protein
	3_15180001_15210000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-J05	At3g43190 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At3g43190 ,RAFL05-07-J05 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1)
	1_3540001_3570000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-07-N24	At1g10740 / lipase -related		At1g10740 ,RAFL11-07-N24 expressed protein
	4_6300001_6330000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-14-D12	At4g12430 / trehalose-6-phosphate phosphatase, putative		At4g12430 ,RAFL07-14-D12 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase
	1_27420001_27450000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-08-G07	At1g73920 / lipase family		At1g73920 ,RAFL08-08-G07 lipase family protein similar to lipase GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
	1_9840001_9870000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-08-H09	At1g28200 / GRAM domain-containing protein		RAFL05-08-H09 ,At1g28200 GRAM domain-containing protein / ABA-responsive protein-related similar to ABA-responsive protein [Hordeum vulgare] GI:4103635; contains Pfam profile PF02893: GRAM domain
	1_25680001_25710000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-N07	At1g69295 / expressed protein		At1g69295 ,RAFL05-07-N07 beta-1,3-glucanase-related low similarity to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] GI:11071974
	5_26670001_26700000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-07-O05	At5g67600 / expressed protein		At5g67600 ,RAFL05-07-O05 expressed protein
	2_11370001_11400000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-10-M04	At2g26800 / hydroxymethylglutaryl-CoA lyase -related		At2g26800 ,RAFL06-10-M04 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to SP|P35915 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA lyase) {Gallus gallus}; contains Pfam profile PF00682: HMGL-like
	4_14760001_14790000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-11-M03	At4g32770 / sucrose export defective 1 precursor (SXD1)		RAFL07-11-M03 ,At4g32770 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) identical to SP|Q94FY7 Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) {Arabidopsis thaliana}
	4_1920001_1950000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-15-N09	At4g04020 / plastid-lipid associated protein PAP/fibrillin, putative		RAFL07-15-N09 ,At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from [Brassica rapa], fibrillin [Brassica napus] GI:4139097; contains Pfam profile PF04755: PAP_fibrillin
	5_7440001_7470000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-17-P13	At5g22500 / male sterility 2-related protein (emb|CAA68191.1)		At5g22500 ,RAFL09-17-P13 acyl CoA reductase, putative / male-sterility protein, putative similar to acyl CoA reductase [Simmondsia chinensis] GI:5020215; contains Pfam profile PF03015: Male sterility protein; identical to cDNA male sterility 2-like protein GI:1491614
	2_15030001_15060000				1	108	0	4554	0.02337551	0.02337551	1
		RAFL11-09-C20	At2g35940 / homeodomain protein		At2g35940 ,RAFL11-09-C20 homeodomain-containing protein contains 'Homeobox' domain signature, Prosite:PS00027
	2_11100001_11400000				2	107	11	4543	0.035702586	0.35702586	10
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
		RAFL06-10-M04	At2g26800 / hydroxymethylglutaryl-CoA lyase -related		At2g26800 ,RAFL06-10-M04 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to SP|P35915 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA lyase) {Gallus gallus}; contains Pfam profile PF00682: HMGL-like
	3_7800001_8100000				2	107	11	4543	0.035702586	0.32132328	9
		RAFL05-07-L13	At3g22370 / alternative oxidase 1a, mitochondrial (AOX1A)		RAFL05-07-L13 ,At3g22370 alternative oxidase 1a, mitochondrial (AOX1A) identical to GB:Q39219 [SP|Q39219] from [Arabidopsis thaliana]
		RAFL04-13-O07	At3g22200 / 4-aminobutyrate aminotransferase (gamma-amino-N-butyrate transaminase/GABA transaminase/beta-alanine--oxoglutarate aminotransferase)		RAFL04-13-O07 ,At3g22200 4-aminobutyrate aminotransferase / gamma-amino-N-butyrate transaminase / GABA transaminase / beta-alanine--oxoglutarate aminotransferase identical to gamma-aminobutyrate transaminase subunit precursor [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435; contains Pfam profile PF00202: aminotransferase, class III; identical to cDNA gamma-aminobutyrate transaminase subunit precursor, nuclear gene for mitochondrial product GI:14030434
	5_25200001_25500000				3	106	29	4525	0.037709244	0.6033479	16
		RAFL06-15-I24	At5g64080 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At5g64080 ,RAFL06-15-I24 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL05-10-H04	At5g64250 / 2-nitropropane dioxygenase-related protein		RAFL05-10-H04 ,At5g64250 2-nitropropane dioxygenase family / NPD family contains Pfam profile PF03060: oxidoreductase, 2-nitropropane dioxygenase (NPD) family
		RAFL08-15-B03	At5g64230 / expressed protein		RAFL08-15-B03 ,At5g64230 expressed protein
	3_9030001_9060000				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-12-A17	At3g24740 / expressed protein		RAFL06-12-A17 ,At3g24740 expressed protein
	4_10950001_10980000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-C11	At4g22820 / zinc finger -related protein		At4g22820 ,RAFL05-14-C11 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
	4_17070001_17100000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-15-N01	At4g38810 / calcium-binding EF-hand family protein		RAFL08-15-N01 ,At4g38810 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain
	4_3900001_4200000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
	2_7530001_7560000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-I20	At2g17500 / auxin efflux carrier protein family		At2g17500 ,RAFL05-13-I20 auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547
	4_15210001_15240000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-13-D01	At4g33950 / protein kinase, putative		At4g33950 ,RAFL05-13-D01 protein kinase, putative similar to abscisic acid-activated protein kinase [Vicia faba] gi|6739629|gb|AAF27340; contains protein kinase domain, Pfam:PF00069
	3_2130001_2160000				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-09-D22	At3g06780 / glycine-rich protein		At3g06780 ,RAFL06-09-D22 glycine-rich protein
	1_25410001_25440000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-01-L22	At1g68620 / expressed protein		RAFL05-01-L22 ,At1g68620 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
	2_17820001_17850000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-I08	At2g43020 / amine oxidase family		At2g43020 ,RAFL05-17-I08 amine oxidase family protein similar to polyamine oxidase SP:O64411 [Zea mays]; contains Pfam profile PF01593 amine oxidase, flavin-containing
	2_15780001_15810000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-I18	At2g37760 / aldo/keto reductase family		RAFL08-12-I18 ,At2g37760 aldo/keto reductase family protein similar to chalcone reductase [Sesbania rostrata][GI:2792155], and aldose reductase ALDRXV4 [Xerophyta viscosa][GI:4539944], [Hordeum vulgare][GI:728592]
	3_17100001_17130000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-02-O23	At3g46450 / SEC14 cytosolic factor, putative		RAFL05-02-O23 ,At3g46450 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI:|2739044) {Glycine max}
	1_25350001_25380000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-04-N11	At1g68530 / very-long-chain fatty acid condensing enzyme (CUT1)		At1g68530 ,RAFL05-04-N11 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999))
	5_5190001_5220000				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-17-B12	At5g15970 / cold-regulated protein COR6.6 (stress-induced protein KIN2)		At5g15970 ,RAFL04-17-B12 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) identical to SP|P31169 Stress-induced KIN2 protein (Cold-induced COR6.6 protein) {Arabidopsis thaliana}
	4_4110001_4140000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-09-E09	At4g08170 / inositol 1,3,4-trisphosphate 5/6-kinase-related protein		At4g08170 ,RAFL08-09-E09 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol phosphate kinase (GI:27549256) [Zea mays]; similar to inositol 1,3,4-trisphosphate 5/6-kinase (GI:3396079) [Arabidopsis thaliana]
	3_23280001_23310000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-11-G23	At3g63060 / expressed protein		At3g63060 ,RAFL08-11-G23 circadian clock coupling factor, putative similar to gb:AAK56924 circadian clock coupling factor ZGT {Nicotiana tabacum}
	1_2700001_2730000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-05-J23	At1g08570 / thioredoxin family		At1g08570 ,RAFL05-05-J23 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; similar to ESTs gb|T46281, gb|R83933, gb|N65879, emb|F14466, gb|N96726, gb|AA042340, and emb|Z18150
	4_10710001_10740000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-O18	At4g22240 / plastid-lipid associated protein (PAP), putative		At4g22240 ,RAFL05-14-O18 plastid-lipid associated protein PAP, putative similar to plastid-lipid associated proteins PAP2 [Brassica rapa] GI:14248550 GI:14248556; contains Pfam profile PF04755: PAP_fibrillin
	1_4710001_4740000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-14-G09	At1g13740 / expressed protein		At1g13740 ,RAFL08-14-G09 expressed protein
	3_21900001_21930000				1	108	1	4553	0.0462095	0.092419	2
		RAFL03-09-F17	At3g59280 / expressed protein		RAFL03-09-F17 ,At3g59280 signaling molecule-related contains similarity to mitochondria-associated granulocyte macrophage CSF signaling molecule, mitochondrial precursor (CGI-136) [Mus musculus] SWISS-PROT:Q9CQV1
	5_26460001_26490000				1	108	1	4553	0.0462095	0.092419	2
		RAFL07-13-A16	At5g67030 / zeaxanthin epoxidase precursor (LOS6/ABA1)(ZEP)		At5g67030 ,RAFL07-13-A16 zeaxanthin epoxidase (ZEP) (ABA1) identical to GI:9857296 AtABA1; controls Pfam profiles PF01360: Monooxygenase and PF00498: FHA domain; identical to cDNA AtABA1, GI:9857295
	5_14460001_14490000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-C22	At5g37300 / expressed protein		RAFL08-12-C22 ,At5g37300 expressed protein
	4_1500001_1530000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-C10	At4g03420 / expressed protein		At4g03420 ,RAFL05-17-C10 expressed protein
	3_5790001_5820000				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-11-B18	At3g16990 / seed maturation protein -related		At3g16990 ,RAFL09-11-B18 TENA/THI-4 family protein contains Pfam profile: PF03070 TENA/THI-4 family
	2_11280001_11310000				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
	3_7890001_7920000				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-07-L13	At3g22370 / alternative oxidase 1a, mitochondrial (AOX1A)		RAFL05-07-L13 ,At3g22370 alternative oxidase 1a, mitochondrial (AOX1A) identical to GB:Q39219 [SP|Q39219] from [Arabidopsis thaliana]
	1_600001_630000				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-16-I05	At1g02816 / expressed protein		RAFL04-16-I05 ,At1g02816 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
Cluster:2-2					A	B	C	D	P	P'	N
	4_17430001_17460000				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL09-15-K07	At4g39800 / myo-inositol-1-phosphate synthase		At4g39800 ,RAFL09-15-K07 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
		RAFL09-14-L01	At4g39800 / myo-inositol-1-phosphate synthase		RAFL09-14-L01 ,At4g39800 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
	5_16800001_16830000				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
	3_8100001_8130000				2	51	1	4609	3.7755756E-4	7.551151E-4	2
		RAFL07-10-P11	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-10-P11 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
		RAFL07-12-E10	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-12-E10 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
	4_17400001_17700000				2	51	9	4601	0.0065294323	0.052235458	8
		RAFL09-15-K07	At4g39800 / myo-inositol-1-phosphate synthase		At4g39800 ,RAFL09-15-K07 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
		RAFL09-14-L01	At4g39800 / myo-inositol-1-phosphate synthase		RAFL09-14-L01 ,At4g39800 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
	3_8100001_8400000				2	51	11	4599	0.009126297	0.07301038	8
		RAFL07-10-P11	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-10-P11 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
		RAFL07-12-E10	At3g22890 / ATP sulfurylase -related		At3g22890 ,RAFL07-12-E10 sulfate adenylyltransferase 1 / ATP-sulfurylase 1 (APS1) nearly identical to ATP sulfurylase (APS1) [Arabidopsis thaliana] GI:6606509
	5_16800001_17100000				2	51	11	4599	0.009126297	0.07301038	8
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
	1_27900001_28200000				2	51	12	4598	0.010570335	0.105703354	10
		RAFL04-15-A17	At1g75350 / chloroplast 50S ribosomal protein L31 -related		RAFL04-15-A17 ,At1g75350 ribosomal protein L31 family protein similar to SP:O46917 from [Guillardia theta]
		RAFL04-15-F10	At1g75680 / glycosyl hydrolase family 9		At1g75680 ,RAFL04-15-F10 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GB:AAC12685 GI:3025470 from [Pinus radiata]
	1_8520001_8550000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-19-M06	At1g24100 / UDP-glycosyltransferase family		At1g24100 ,RAFL04-19-M06 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	5_18240001_18270000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL05-01-H15	At5g45680 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase		RAFL05-01-H15 ,At5g45680 FK506-binding protein 1 (FKBP13) identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (Ppiase) (Rotamase) (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744) [Arabidopsis thaliana]; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
	4_2100001_2130000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-12-C20	At4g04330 / expressed protein		RAFL04-12-C20 ,At4g04330 expressed protein
	2_17760001_17790000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL07-11-G08	At2g42840 / protodermal factor 1		At2g42840 ,RAFL07-11-G08 protodermal factor 1 (PDF1) identical to protodermal factor 1 [Arabidopsis thaliana] gi|4929130|gb|AAD33869
	4_14220001_14250000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL05-09-I19	At4g31500 / cytochrome P450 83B1		At4g31500 ,RAFL05-09-I19 cytochrome P450 83B1 (CYP83B1) Identical to Cytochrome P450 (SP:O65782 )[Arabidopsis thaliana]
	4_8550001_8580000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-16-M17	At4g17090 / glycosyl hydrolase family 14 (beta-amylase)		At4g17090 ,RAFL06-16-M17 beta-amylase (CT-BMY) / 1,4-alpha-D-glucan maltohydrolase identical to beta-amylase enzyme GI:6065749 from [Arabidopsis thaliana]
	1_19680001_19710000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-10-O06	At1g53840 / pectinesterase family		At1g53840 ,RAFL06-10-O06 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
	4_11160001_11190000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-08-M19	At4g23400 / major intrinsic protein (MIP) family		RAFL06-08-M19 ,At4g23400 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230
	5_660001_690000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL07-09-N07	At5g02940 / expressed protein		At5g02940 ,RAFL07-09-N07 expressed protein
	5_13530001_13560000				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-16-N11	At5g35630 / glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1) (pir||S18600)		At5g35630 ,RAFL04-16-N11 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-- ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
	5_13500001_13800000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-16-N11	At5g35630 / glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1) (pir||S18600)		At5g35630 ,RAFL04-16-N11 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-- ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
	5_2130001_2160000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-12-I04	At5g06870 / polygalacturonase inhibiting protein (PGIP2)		At5g06870 ,RAFL04-12-I04 polygalacturonase inhibiting protein 2 (PGIP2) identical to polygalacturonase inhibiting protein 2 (PGIP2) [Arabidopsis thaliana] gi|7800201|gb|AAF69828; contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
	1_28050001_28080000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-15-F10	At1g75680 / glycosyl hydrolase family 9		At1g75680 ,RAFL04-15-F10 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GB:AAC12685 GI:3025470 from [Pinus radiata]
	1_5910001_5940000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL11-07-B20	At1g17330 / hypothetical protein		RAFL11-07-B20 ,At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related
	1_27900001_27930000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-15-A17	At1g75350 / chloroplast 50S ribosomal protein L31 -related		RAFL04-15-A17 ,At1g75350 ribosomal protein L31 family protein similar to SP:O46917 from [Guillardia theta]
	3_4200001_4230000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-17-H16	At3g13110 / serine acetyltransferase (Sat-1)		RAFL04-17-H16 ,At3g13110 serine O-acetyltransferase (SAT-1) identical to serine acetyltransferase (Sat-1) GI:1184048 [Arabidopsis thaliana]
	1_24420001_24450000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-07-J12	At1g66430 / pfkB type carbohydrate kinase protein family		At1g66430 ,RAFL05-07-J12 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
	5_5880001_5910000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-20-J21	At5g17870 / plastid-specific ribosomal protein 6 precursor (Psrp-6) - like		RAFL04-20-J21 ,At5g17870 plastid-specific ribosomal protein-related contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from [Spinacia oleracea]
	3_19200001_19230000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-19-K24	At3g51820 / chlorophyll synthetase, putative		RAFL04-19-K24 ,At3g51820 chlorophyll synthetase, putative identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thaliana
	1_3870001_3900000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-15-L23	At1g11580 / pectin methylesterase, putative		RAFL05-15-L23 ,At1g11580 pectin methylesterase, putative similar to pectin methylesterase GI:1617583 from [Lycopersicon esculentum]
	2_16140001_16170000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-20-B02	At2g38750 / annexin -related		At2g38750 ,RAFL04-20-B02 annexin 4 (ANN4) nearly identical to annexin (AnnAt4) [Arabidopsis thaliana] GI:6503084; contains Pfam profile PF00191: Annexin
	2_10140001_10170000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-15-F12	At2g24020 / expressed protein		RAFL05-15-F12 ,At2g24020 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718
	4_2100001_2400000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-12-C20	At4g04330 / expressed protein		RAFL04-12-C20 ,At4g04330 expressed protein
	1_21870001_21900000				1	52	1	4609	0.022605369	0.045210738	2
		RAFL05-19-J02	At1g60260 / glycosyl hydrolase family 1		At1g60260 ,RAFL05-19-J02 pseudogene, glycosyl hydrolase family 1 contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]; blastp match of 60% identity and 6.4e-121 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}
	1_23550001_23580000				1	52	2	4608	0.033719275	0.06743855	2
		RAFL09-14-M16	At1g64390 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		At1g64390 ,RAFL09-14-M16 endo-1,4-beta-glucanase, putative / cellulase, putative similar to endo-beta-1,4-glucanase GI:4972236 from [Fragaria x ananassa] (Plant Mol. Biol. 40, 323-332 (1999))
	1_1800001_1830000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-17-D16	At1g06000 / glycosyltransferase family		RAFL05-17-D16 ,At1g06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains similarity to UDPG glucosyltransferase GB:AAB62270 GI:2232354 from [Solanum berthaultii]
	3_23130001_23160000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-08-C20	At3g62530 / expressed protein		At3g62530 ,RAFL05-08-C20 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130 PBS lyase HEAT-like repeat
	4_17310001_17340000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-21-P16	At4g39460 / mitochondrial carrier protein family		At4g39460 ,RAFL05-21-P16 mitochondrial substrate carrier family protein
	5_19080001_19110000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL04-20-F22	At5g47840 / expressed protein		At5g47840 ,RAFL04-20-F22 adenylate kinase, chloroplast, putative / ATP-AMP transphosphorylase, putative similar to SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase) {Zea mays}; contains Pfam profile PF00406: Adenylate kinase
	2_16410001_16440000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-02-D04	At2g39460 / 60S ribosomal protein L23A (RPL23aA)		RAFL05-02-D04 ,At2g39460 60S ribosomal protein L23A (RPL23aA) identical to GB:AF034694
	1_6210001_6240000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-14-K24	At1g18060 / expressed protein		At1g18060 ,RAFL05-14-K24 expressed protein
	1_18930001_18960000				1	52	2	4608	0.033719275	0.06743855	2
		RAFL04-09-C15	At1g52030 / myrosinase binding protein, putative		At1g52030 ,RAFL04-09-C15 myrosinase-binding protein, putative (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding protein-like f-AtMBP [Arabidopsis thaliana]; similar to myrosinase binding protein GI:1711295 from [Brassica napus]; contains Pfam PF01419: Jacalin-like lectin domain; identical to cDNA myrosinase-binding protein-like protein (MBP1.2) GI:6760446
	1_25080001_25110000				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-04-I18	At1g67850 / F12A21.2		RAFL05-04-I18 ,At1g67850 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707)
	1_24180001_24210000				1	52	3	4607	0.044709165	0.08941833	2
		RAFL04-16-J21	At1g65960 / glutamate decarboxylase 2 (GAD 2)		At1g65960 ,RAFL04-16-J21 glutamate decarboxylase 2 (GAD 2) similar to glutamate decarboxylase (gad) GI:294111 from [Petunia hybrida]
	4_15330001_15360000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL06-12-L22	At4g34190 / stress enhanced protein 1 (SEP1)		RAFL06-12-L22 ,At4g34190 stress enhanced protein 1 (SEP1) identical to stress enhanced protein 1 (SEP1) GI:7384978 from [Arabidopsis thaliana]
	2_9900001_10200000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL05-15-F12	At2g24020 / expressed protein		RAFL05-15-F12 ,At2g24020 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718
	5_2790001_2820000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-19-A22	At5g08650 / GTP-binding protein LepA, putative		RAFL04-19-A22 ,At5g08650 GTP-binding protein LepA, putative
	5_8310001_8340000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-09-D16	At5g24420 / 6-phosphogluconolactonase-related protein		At5g24420 ,RAFL04-09-D16 glucosamine/galactosamine-6-phosphate isomerase-related contains weak similarity to Swiss-Prot:O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) [Homo sapiens]
	1_10350001_10380000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-20-P21	At1g29670 / GDSL-motif lipase/hydrolase protein		RAFL04-20-P21 ,At1g29670 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL1 GI:15054382 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase/Acylhydrolase with GDSL-like motif
	3_3690001_3720000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL07-09-F11	At3g11700 / expressed protein		RAFL07-09-F11 ,At3g11700 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein contains Pfam profile PF02469: Fasciclin domain
	2_14490001_14520000				1	52	3	4607	0.044709165	0.13412748	3
		RAFL04-17-F09	At2g34510 / expressed protein		At2g34510 ,RAFL04-17-F09 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
	5_4590001_4620000				1	52	3	4607	0.044709165	0.17883666	4
		RAFL04-09-E08	At5g14320 / 30S ribosomal protein S13, chloroplast precursor (CS13)		At5g14320 ,RAFL04-09-E08 30S ribosomal protein S13, chloroplast (CS13) ribosomal protein S13 precursor, chloroplast Arabidopsis thaliana, PIR:S59594; identical to cDNA ribosomal protein S13 GI:1515106
Cluster:10-1					A	B	C	D	P	P'	N
	1_7080001_7110000				3	40	2	4618	7.213993E-6	2.1641978E-5	3
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	4_1020001_1050000				2	41	1	4619	2.4776903E-4	4.9553806E-4	2
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
	1_6900001_7200000				3	40	14	4606	4.5403827E-4	0.0059024976	13
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	4_12660001_12690000				2	41	4	4616	0.0012172027	0.004868811	4
		RAFL09-15-E01	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL09-15-E01 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
		RAFL05-21-C17	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL05-21-C17 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
	4_1_3000000				4	39	77	4543	0.006235307	0.14964737	24
		RAFL05-12-H13	At4g01020 / helicase domain-containing protein		At4g01020 ,RAFL05-12-H13 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain
		RAFL05-14-D24	At4g05100 / myb DNA-binding protein		At4g05100 ,RAFL05-14-D24 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
	1_9630001_9660000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL04-15-K19	At1g27730 / salt-tolerance zinc finger protein		At1g27730 ,RAFL04-15-K19 zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) identical to salt-tolerance zinc finger protein GB:CAA64820 GI:1565227 from [Arabidopsis thaliana]; contains Pfam domain, PF00096: Zinc finger, C2H2 type; identical to cDNA zinc finger protein STZ/ZAT10 (STZ/ZAT10) GI:9965730
	1_28980001_29010000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL09-14-A12	At1g78070 / expressed protein		At1g78070 ,RAFL09-14-A12 WD-40 repeat family protein contains Pfam profile PF00400: WD domain, G-beta repeat
	5_360001_390000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL06-12-H12	At5g02020 / expressed protein		At5g02020 ,RAFL06-12-H12 expressed protein
	5_20190001_20220000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-09-K04	At5g50360 / expressed protein		At5g50360 ,RAFL05-09-K04 expressed protein
	3_22590001_22620000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-08-B11	At3g61060 / F-box protein (lectin-related)		RAFL05-08-B11 ,At3g61060 F-box family protein / lectin-related low similarity to PP2 lectin polypeptide [Cucurbita maxima] GI:410437; contains Pfam profile PF00646: F-box domain
	3_4830001_4860000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-11-H16	At3g14440 / 9-cis-epoxycarotenoid dioxygenase (neoxanthin cleavage enzyme)(NC1)(NCED1), putative		At3g14440 ,RAFL08-11-H16 9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin cleavage enzyme, putative / carotenoid cleavage dioxygenase, putative similar to 9-cis-epoxycarotenoid dioxygenase GB:AAF26356 [GI:6715257][Phaseolus vulgaris]
	2_12870001_12900000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL06-07-B08	At2g30360 / CBL-interacting protein kinase 11		At2g30360 ,RAFL06-07-B08 CBL-interacting protein kinase 11 (CIPK11) identical to CBL-interacting protein kinase 11 [Arabidopsis thaliana] gi|13249121|gb|AAK16686; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 11 (CIPK11)partial cds GI:13249120
	2_7680001_7710000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-19-H17	At2g17840 / senescence-associated protein 12 -related		At2g17840 ,RAFL08-19-H17 senescence/dehydration-associated protein-related (ERD7) similar to senescence-associated protein 12 [Hemerocallis hybrid cultivar] gi|3551958|gb|AAC34857; strong similarity to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB63916; identical to cDNA ERD7 partial cds GI:15320411
	4_2610001_2640000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-14-D24	At4g05100 / myb DNA-binding protein		At4g05100 ,RAFL05-14-D24 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505
	1_7650001_7680000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
	4_420001_450000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-12-H13	At4g01020 / helicase domain-containing protein		At4g01020 ,RAFL05-12-H13 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain
	2_9480001_9510000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-18-N19	At2g22470 / arabinogalactan-protein (AGP2)		RAFL08-18-N19 ,At2g22470 arabinogalactan-protein (AGP2) identical to gi|3883122|gb|AAC77824; supported by cDNA gi|3883121|gb|AF082299
	5_2070001_2100000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-11-C23	At5g06760 / late embryogenesis abundant protein LEA like		RAFL08-11-C23 ,At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein low similarity to SP|P46515 11 kDa late embryogenesis abundant protein (DS11) {Helianthus annuus}; contains Pfam profile PF03760: Late embryogenesis abundant (LEA) group 1
	1_150001_180000				1	42	0	4620	0.009221531	0.009221531	1
		RAFL05-17-B13	At1g01470 / expressed protein		RAFL05-17-B13 ,At1g01470 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P46518 Late embryogenesis abundant protein Lea14-A {Gossypium hirsutum}; contains Pfam profile PF03168: Late embryogenesis abundant protein
	4_900001_1200000				2	41	15	4605	0.01034811	0.13452543	13
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
	4_12600001_12900000				2	41	19	4601	0.0156107405	0.23416111	15
		RAFL09-15-E01	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL09-15-E01 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
		RAFL05-21-C17	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL05-21-C17 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
	4_12930001_12960000				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-16-H23	At4g28140 / AP2 domain transcription factor, putative		RAFL05-16-H23 ,At4g28140 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 - Arabidopsis thaliana, PID:g2281633
	1_22800001_22830000				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-14-E16	At1g62570 / flavin-containing monooxygenase (FMO) family		At1g62570 ,RAFL05-14-E16 flavin-containing monooxygenase family protein / FMO family protein low similarity to flavin-containing monooxygenase FMO3 [Rattus norvegicus] GI:12006730; contains Pfam profile PF00743: Flavin-binding monooxygenase-like
	3_2010001_2040000				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-11-O20	At3g06500 / neutral invertase -related		RAFL05-11-O20 ,At3g06500 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI:4200165; contains Pfam profile PF04853: Plant neutral invertase
	5_5730001_5760000				1	42	1	4619	0.018359985	0.03671997	2
		RAFL08-11-P07	At5g17460 / expressed protein		At5g17460 ,RAFL08-11-P07 expressed protein
	5_5190001_5220000				1	42	1	4619	0.018359985	0.03671997	2
		RAFL06-08-N16	At5g15960 / stress-induced protein KIN1		At5g15960 ,RAFL06-08-N16 stress-responsive protein (KIN1) / stress-induced protein (KIN1) identical to SP|P18612 Stress-induced KIN1 protein {Arabidopsis thaliana}
	1_6000001_9000000				4	39	111	4509	0.020676302	0.57893646	28
		RAFL04-20-N09	At1g20440 / dehydrin (COR47)		RAFL04-20-N09 ,At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROT:P31168
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
		RAFL05-04-C07	At1g20450 / dehydrin (ERD10)		RAFL05-04-C07 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
		RAFL05-08-P17	At1g20450 / dehydrin (ERD10)		RAFL05-08-P17 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	5_3210001_3240000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-09-N03	At5g10300 / hydrolase, alpha/beta fold family		RAFL05-09-N03 ,At5g10300 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, alpha-hydroxynitrile lyase [Manihot esculenta] GI:2780225; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	3_17970001_18000000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-15-C04	At3g48520 / cytochrome P450 family		At3g48520 ,RAFL05-15-C04 cytochrome P450 family protein similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450
	2_17640001_17670000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-03-A05	At2g42540 / cold-regulated protein (cor15a)		At2g42540 ,RAFL05-03-A05 cold-responsive protein / cold-regulated protein (cor15a) identical to cold-regulated protein cor15a [Arabidopsis thaliana] GI:507149; contains Pfam profile PF02987: Late embryogenesis abundant protein
	3_1620001_1650000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-15-E19	At3g05640 / protein phosphatase 2C (PP2C), putative		At3g05640 ,RAFL05-15-E19 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase-2C GB:AAC36699 from [Mesembryanthemum crystallinum]
	3_8640001_8670000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL09-13-P15	At3g23920 / glycosyl hydrolase family 14 (beta-amylase)		RAFL09-13-P15 ,At3g23920 beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative similar to beta-amylase enzyme [Arabidopsis thaliana] GI:6065749, beta-amylase PCT-BMYI from [Solanum tuberosum]; contains Pfam profile PF01373: Glycosyl hydrolase family 14
	2_8040001_8070000				1	42	2	4618	0.027416093	0.08224828	3
		RAFL05-13-B06	At2g18700 / glycosyltransferase family 20		RAFL05-13-B06 ,At2g18700 glycosyl transferase family 20 protein / trehalose-phosphatase family protein similar to trehalose-6-phosphate synthase SL-TPS/P [Selaginella lepidophylla] GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase
	4_15330001_15360000				1	42	3	4617	0.03639058	0.14556232	4
		RAFL04-14-P24	At4g34230 / cinnamyl-alcohol dehydrogenase (CAD), putative		RAFL04-14-P24 ,At4g34230 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl alcohol dehydrogenase, Nicotiana tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
	5_24540001_24570000				1	42	4	4616	0.045284163	0.22642082	5
		RAFL05-14-G18	At5g61820 / expressed protein		At5g61820 ,RAFL05-14-G18 expressed protein MtN19, Medicago truncatula, EMBL:MTY15367
	5_20100001_20400000				1	42	4	4616	0.045284163	0.22642082	5
		RAFL05-09-K04	At5g50360 / expressed protein		At5g50360 ,RAFL05-09-K04 expressed protein
	1_7500001_7800000				1	42	4	4616	0.045284163	0.22642082	5
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
Cluster:7-1					A	B	C	D	P	P'	N
	1_8010001_8040000				4	261	2	4396	1.3973503E-4	4.1920505E-4	3
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
	2_7260001_7290000				2	263	0	4398	0.0032181933	0.0032181933	1
		RAFL04-16-L05	At2g16890 / glycosyltransferase family		RAFL04-16-L05 ,At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
		RAFL05-04-P01	At2g16900 / expressed protein		RAFL05-04-P01 ,At2g16900 expressed protein
	5_24570001_24600000				2	263	0	4398	0.0032181933	0.0032181933	1
		RAFL07-15-O05	At5g61960 / Meiosis protein mei2-related		At5g61960 ,RAFL07-15-O05 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122
		RAFL08-16-K22	At5g61960 / Meiosis protein mei2-related		At5g61960 ,RAFL08-16-K22 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122
	1_7800001_8100000				5	260	14	4384	0.0034332294	0.034332294	10
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL06-08-E17	At1g22840 / cytochrome C -related		RAFL06-08-E17 ,At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
	Chromosome:1				84	181	1035	3363	0.0037613933	0.12412597	33
		RAFL11-06-E04	At1g76920 / F-box protein family (FBX3)		At1g76920 ,RAFL11-06-E04 F-box family protein (FBX3) contains similarity to stamina pistilloidia GI:4101570, the pea ortholog of Fim and UFO from [Pisum sativum]
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-15-K12	At1g54270 / eukaryotic translation initiation factor 4A-2 (eIF4A-2)		RAFL05-15-K12 ,At1g54270 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia]
		RAFL02-07-N19	At1g10760 / SEX1 protein; nuclear gene for chloroplast product		At1g10760 ,RAFL02-07-N19 starch excess protein (SEX1) identical to SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA gi|12044357|gb|AF312027.1|AF312027
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-12-E01	At1g01550 / expressed protein		At1g01550 ,RAFL08-12-E01 expressed protein
		RAFL06-08-E17	At1g22840 / cytochrome C -related		RAFL06-08-E17 ,At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
		RAFL09-12-N02	At1g07630 / expressed protein		RAFL09-12-N02 ,At1g07630 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2c (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL11-05-C09	At1g78100 / F-box protein family		RAFL11-05-C09 ,At1g78100 F-box family protein contains F-box domain Pfam:PF00646
		RAFL09-16-J21	At1g72330 / alanine aminotransferase, putative		At1g72330 ,RAFL09-16-J21 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa
		RAFL05-16-O12	At1g27930 / expressed protein		RAFL05-16-O12 ,At1g27930 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579)
		RAFL05-21-L05	At1g60170 / expressed protein		RAFL05-21-L05 ,At1g60170 pre-mRNA processing ribonucleoprotein binding region-containing protein similar to U4/U6 snRNP-associated 61 kDa protein [Homo sapiens] GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain
		RAFL09-14-E14	At1g20560 / AMP-dependent synthetase and ligase family		RAFL09-14-E14 ,At1g20560 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to adenosine monophosphate binding protein 1 AMPBP1 (AMPBP1) GI:20799710
		RAFL08-11-M01	At1g67580 / protein kinase family		RAFL08-11-M01 ,At1g67580 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL11-04-K22	At1g29050 / expressed protein		RAFL11-04-K22 ,At1g29050 expressed protein similar to hypothetical protein GB:AAB67625 GI:2342727 from [Arabidopsis thaliana]
		RAFL04-20-P06	At1g05170 / galactosyltransferase family		RAFL04-20-P06 ,At1g05170 galactosyltransferase family protein
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL02-05-J03	At1g67730 / short chain dehydrogenase/reductase family protein (b-keto acyl reductase, putative)		RAFL02-05-J03 ,At1g67730 b-keto acyl reductase, putative (GLOSSY8) similar to b-keto acyl reductase GI:2586127 from [Hordeum vulgare]
		RAFL07-18-E24	At1g03400 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL07-18-E24 ,At1g03400 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); similar to ESTs emb|Z34690, gb|T04168, gb|H37738, gb|T76913, gb|T43801, amd gb|T21964
		RAFL06-16-K07	At1g73720 / transducin / WD-40 repeat protein family		RAFL06-16-K07 ,At1g73720 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to Will die slowly protein (SP:Q9V3J8)[Drosophila melanogaster]
		RAFL05-19-L21	At1g60650 / glycine-rich RNA-binding protein, putative		At1g60650 ,RAFL05-19-L21 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
		RAFL06-09-B20	At1g80400 / C3HC4-type zinc finger protein family		RAFL06-09-B20 ,At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus}; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL07-08-A08	At1g06780 / glycosyltransferase family 8		At1g06780 ,RAFL07-08-A08 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
		RAFL09-17-E24	At1g04140 / transducin / WD-40 repeat protein family		RAFL09-17-E24 ,At1g04140 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb|M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb|Q05946. ESTs gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101, gb|H36304, and gb|N65606 come from
		RAFL05-21-H02	At1g15920 / BTG1 binding factor 1 -related		RAFL05-21-H02 ,At1g15920 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus]
		RAFL09-17-J17	At1g49160 / protein kinase family		RAFL09-17-J17 ,At1g49160 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL09-07-D22	At1g16670 / protein kinase family		RAFL09-07-D22 ,At1g16670 protein kinase family protein contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from [Arabidopsis thaliana]
		RAFL04-18-D20	At1g78570 / NAD-dependent epimerase/dehydratase family		At1g78570 ,RAFL04-18-D20 NAD-dependent epimerase/dehydratase family protein similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family
		RAFL04-19-J24	At1g20920 / DEAD box RNA helicase, putative		At1g20920 ,RAFL04-19-J24 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-14-O09	At1g49710 / fucosyltransferase, putative		RAFL07-14-O09 ,At1g49710 fucosyltransferase-like protein, putative / FucT2, putative / FucTB, putative (FUT12) identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana]; similar to glycoprotein 3-alpha-L-fucosyltransferase A (SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam profile PF00852: Fucosyl transferase
		RAFL09-18-J20	At1g52740 / histone H2A, putative		RAFL09-18-J20 ,At1g52740 histone H2A, putative similar to histone H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-12-O04	At1g16010 / expressed protein		At1g16010 ,RAFL05-12-O04 magnesium transporter CorA-like family protein (MRS2-1) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
		RAFL07-13-L09	At1g33980 / expressed protein		At1g33980 ,RAFL07-13-L09 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens]
		RAFL05-08-M04	At1g61740 / expressed protein		RAFL05-08-M04 ,At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI:4079631
		RAFL03-01-D05	At1g07080 / expressed protein		RAFL03-01-D05 ,At1g07080 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to SP|P13284 Gamma-interferon inducible lysosomal thiol reductase precursor {Homo sapiens}; contains Pfam profile PF03227: Gamma interferon inducible lysosomal thiol reductase (GILT)
		RAFL08-13-A20	At1g33230 / expressed protein		At1g33230 ,RAFL08-13-A20 expressed protein
		RAFL05-09-P18	At1g53320 / F-box containing tubby family protein		RAFL05-09-P18 ,At1g53320 F-box family protein / tubby family protein (TULP7) similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby protein homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans] contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
		RAFL08-12-N08	At1g71040 / multicopper oxidase, type 1 family		At1g71040 ,RAFL08-12-N08 multi-copper oxidase type I family protein similar to SP|P07788 Spore coat protein A {Bacillus subtilis}; contains Pfam profile PF00394: Multicopper oxidase
		RAFL04-10-F21	At1g61250 / secretory carrier membrane protein		At1g61250 ,RAFL04-10-F21 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family
		RAFL07-18-M23	At1g10080 / unknown similar to AGI		RAFL07-18-M23 ,At1g10080 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-18-M23
		RAFL04-13-M11	At1g04260 / expressed protein		At1g04260 ,RAFL04-13-M11 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor [Mus musculus] GI:7716652; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
		RAFL07-11-D20	At1g16860 / expressed protein		At1g16860 ,RAFL07-11-D20 merozoite surface protein-related contains weak similarity to merozoite surface protein [Plasmodium falciparum] gi|12043655|gb|AAG47601
		RAFL05-08-H19	At1g68820 / expressed protein		RAFL05-08-H19 ,At1g68820 membrane protein, putative contains 7 transmembrane domains; similar to inhibitor of apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata nucleopolyhedrovirus]
		RAFL07-13-G24	At1g03040 / bHLH protein		At1g03040 ,RAFL07-13-G24 basic helix-loop-helix (bHLH) family protein component of the pyruvate dehydrogenase complex E3, contains PF|00010 helix-loop-helix DNA-binding domain. ESTs gb|T45640 and gb|T22783 come from this gene
		RAFL09-06-D22	At1g79690 / MutT/nudix family protein		At1g79690 ,RAFL09-06-D22 MutT/nudix family protein contains Pfam NUDIX domain [PF00293]; very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase [gi:15826361] [gi:15826360]
		RAFL09-15-I11	At1g37130 / nitrate reductase 2 (NR2)		RAFL09-15-I11 ,At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-16-H09	At1g20980 / SPL1-related protein -related		RAFL09-16-H09 ,At1g20980 SPL1-Related2 protein (SPL1R2) strong similarity to SPL1-Related2 protein [Arabidopsis thaliana] GI:6006427; contains Pfam profile PF03110: SBP domain
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL06-14-H20	At1g04850 / expressed protein		RAFL06-14-H20 ,At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain
		RAFL04-09-P08	At1g32490 / RNA helicase, putative		RAFL04-09-P08 ,At1g32490 RNA helicase, putative similar to ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL06-15-D19	At1g13580 / longevity assurance protein -related		RAFL06-15-D19 ,At1g13580 longevity-assurance (LAG1) family protein similar to Alternaria stem canker resistance protein (ASC1) [Lycopersicon esculentum] GI:7688742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1)
		RAFL03-07-O21	At1g19570 / dehydroascorbate reductase, putative		RAFL03-07-O21 ,At1g19570 dehydroascorbate reductase, putative similar to GB:BAA90672 from (Oryza sativa)
		RAFL08-10-J10	At1g04990 / zinc finger protein 2 -related		RAFL08-10-J10 ,At1g04990 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL09-13-D16	At1g53210 / expressed protein		RAFL09-13-D16 ,At1g53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand
		RAFL09-14-L13	At1g63420 / expressed protein		RAFL09-14-L13 ,At1g63420 expressed protein
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
		RAFL08-15-G22	At1g17440 / expressed protein		At1g17440 ,RAFL08-15-G22 transcription initiation factor IID (TFIID) subunit A family protein similar to SP|Q16514 Transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam profile PF03847: Transcription initiation factor TFIID subunit A
		RAFL09-16-K08	At1g70810 / C2 domain-containing protein		RAFL09-16-K08 ,At1g70810 C2 domain-containing protein similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana]
		RAFL06-13-N05	At1g47240 / NRAMP metal ion transporter 2, putative (NRAMP2)		RAFL06-13-N05 ,At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563
		RAFL07-13-I02	At1g30810 / expressed protein		At1g30810 ,RAFL07-13-I02 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein contains similarity to Swiss-Prot:P29375 retinoblastoma-binding protein 2 (RBBP-2) [Homo sapiens]; contains Pfam domains PF02375: jmjN domain and PF02373: jmjC domain; intron between exons 6 and 7 was required to circumvent a frameshift. There could be an underlying sequence error.
		RAFL05-09-A05	At1g63490 / RB-binding protein -related		At1g63490 ,RAFL05-09-A05 transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus musculus]; similar to Retinoblastoma-binding protein 2 (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam PF02373: jmjC domain
		RAFL05-08-K14	At1g72175 / C3HC4-type zinc finger protein family		At1g72175 ,RAFL05-08-K14 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL02-06-O21	At1g26665 / expressed protein		At1g26665 ,RAFL02-06-O21 expressed protein
		RAFL07-07-K16	At1g35670 / calcium-dependent protein kinase (CDPK)		RAFL07-07-K16 ,At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL06-07-P06	At1g72360 / ethylene responsive element binding factor (EREBP), putative		RAFL06-07-P06 ,At1g72360 ethylene-responsive element-binding protein, putative contains Pfam profile: PF00847 AP2 domain; similar to ethylene responsive element binding protein (GI:18496063)[Fagus sylvatica]
		RAFL05-09-D08	At1g66160 / expressed protein		RAFL05-09-D08 ,At1g66160 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain
		RAFL09-16-B05	At1g79975 / expressed protein		At1g79975 ,RAFL09-16-B05 expressed protein
		RAFL06-12-C16	At1g56200 / expressed protein		RAFL06-12-C16 ,At1g56200 expressed protein
		RAFL04-17-L18	At1g07670 / calcium-transporting ATPase 4, endoplasmic reticulum-type (calcium pump)		At1g07670 ,RAFL04-17-L18 calcium-transporting ATPase 4, endoplasmic reticulum-type (ECA4) identical to SP|Q9XES1 Calcium-transporting ATPase 4, endoplasmic reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana); contains InterPro Accession IPR006069: Cation transporting ATPase
		RAFL05-20-M22	At1g64740 / tubulin alpha-1 chain (TUA1)		RAFL05-20-M22 ,At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
		RAFL05-18-I06	At1g28710 / expressed protein		RAFL05-18-I06 ,At1g28710 expressed protein similar to GI:2827651, GI:7527728, GI:4406788, GI:6063544, GI:10764853 from [Arabidopsis thaliana]
		RAFL06-13-I03	At1g18360 / hydrolase, alpha/beta fold family		RAFL06-13-I03 ,At1g18360 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162,[Rattus norvegicus] GI:19697886; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL09-11-L17	At1g10410 / expressed protein		RAFL09-11-L17 ,At1g10410 expressed protein similar to ESTs gb|N96021 and gb|N96863
		RAFL07-08-G04	At1g68550 / AP2 domain transcription factor, putative		RAFL07-08-G04 ,At1g68550 AP2 domain-containing transcription factor, putative contains Pfam profile: PF00847 AP2 domain
		RAFL04-17-N08	At1g63900 / C3HC4-type zinc finger protein family		At1g63900 ,RAFL04-17-N08 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL09-18-B11	At1g13195 / C3HC4-type zinc finger protein family		RAFL09-18-B11 ,At1g13195 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL05-16-H11	At1g15130 / proline-rich protein family		RAFL05-16-H11 ,At1g15130 hydroxyproline-rich glycoprotein family protein
		RAFL08-12-O19	At1g04690 / potassium channel protein, putative		RAFL08-12-O19 ,At1g04690 potassium channel protein, putative nearly identical to K+ channel protein [Arabidopsis thaliana] GI:1063415; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
		RAFL05-05-F21	At1g34370 / zinc finger protein -related		At1g34370 ,RAFL05-05-F21 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL05-19-K20	At1g27510 / hypothetical protein		At1g27510 ,RAFL05-19-K20 expressed protein
		RAFL09-09-J08	At1g47530 / ripening regulated protein, putative		RAFL09-09-J08 ,At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL09-10-K04	At1g26270 / phosphatidylinositol 3- and 4-kinase family		RAFL09-10-K04 ,At1g26270 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL07-07-A03	At1g36730 / Eukaryotic translation initiation factor 5 -related		At1g36730 ,RAFL07-07-A03 eukaryotic translation initiation factor 5, putative / eIF-5, putative similar to SP|P55876 Eukaryotic translation initiation factor 5 (eIF-5) {Zea mays}; contains Pfam profiles PF02020: eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in IF2B/IF5
	1_1200001_1500000				4	261	10	4388	0.0064861733	0.05837556	9
		RAFL04-20-P06	At1g05170 / galactosyltransferase family		RAFL04-20-P06 ,At1g05170 galactosyltransferase family protein
		RAFL06-14-H20	At1g04850 / expressed protein		RAFL06-14-H20 ,At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain
		RAFL08-10-J10	At1g04990 / zinc finger protein 2 -related		RAFL08-10-J10 ,At1g04990 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL08-12-O19	At1g04690 / potassium channel protein, putative		RAFL08-12-O19 ,At1g04690 potassium channel protein, putative nearly identical to K+ channel protein [Arabidopsis thaliana] GI:1063415; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
	1_12000001_15000000				6	259	25	4373	0.0070306235	0.105459355	15
		RAFL07-13-L09	At1g33980 / expressed protein		At1g33980 ,RAFL07-13-L09 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens]
		RAFL08-13-A20	At1g33230 / expressed protein		At1g33230 ,RAFL08-13-A20 expressed protein
		RAFL09-15-I11	At1g37130 / nitrate reductase 2 (NR2)		RAFL09-15-I11 ,At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL07-07-K16	At1g35670 / calcium-dependent protein kinase (CDPK)		RAFL07-07-K16 ,At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL05-05-F21	At1g34370 / zinc finger protein -related		At1g34370 ,RAFL05-05-F21 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL07-07-A03	At1g36730 / Eukaryotic translation initiation factor 5 -related		At1g36730 ,RAFL07-07-A03 eukaryotic translation initiation factor 5, putative / eIF-5, putative similar to SP|P55876 Eukaryotic translation initiation factor 5 (eIF-5) {Zea mays}; contains Pfam profiles PF02020: eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in IF2B/IF5
	4_12300001_12600000				4	261	11	4387	0.00845582	0.101469845	12
		RAFL05-05-I21	At4g26940 / galactosyltransferase family		At4g26940 ,RAFL05-05-I21 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase
		RAFL05-09-B22	At4g27000 / RNA binding protein 45 (RBP45), putative		RAFL05-09-B22 ,At4g27000 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188
		RAFL05-18-M05	At4g26910 / dihydrolipoamide succinyltransferase -related		At4g26910 ,RAFL05-18-M05 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme
		RAFL04-12-O04	At4g27120 / expressed protein		At4g27120 ,RAFL04-12-O04 expressed protein
	1_29790001_29820000				2	263	1	4397	0.009291402	0.018582804	2
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
	4_4710001_4740000				2	263	1	4397	0.009291402	0.018582804	2
		RAFL09-17-I12	At4g08960 / phosphotyrosyl phosphatase activator protein -related		RAFL09-17-I12 ,At4g08960 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
		RAFL06-11-F02	At4g08980 / F-box protein family, AtFBW2		At4g08980 ,RAFL06-11-F02 F-box family protein (FBW2) contains similarity to N7 protein GI:3273101 from [Medicago truncatula]
	1_23100001_23400000				3	262	6	4392	0.0118007725	0.07080463	6
		RAFL09-14-L13	At1g63420 / expressed protein		RAFL09-14-L13 ,At1g63420 expressed protein
		RAFL05-09-A05	At1g63490 / RB-binding protein -related		At1g63490 ,RAFL05-09-A05 transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus musculus]; similar to Retinoblastoma-binding protein 2 (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam PF02373: jmjC domain
		RAFL04-17-N08	At1g63900 / C3HC4-type zinc finger protein family		At1g63900 ,RAFL04-17-N08 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
	5_21900001_22200000				4	261	13	4385	0.0134790605	0.09435342	7
		RAFL11-06-H06	At5g54650 / formin homology 2 (FH2) domain-containing protein		RAFL11-06-H06 ,At5g54650 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181
		RAFL06-13-G07	At5g54855 / expressed protein		At5g54855 ,RAFL06-13-G07 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family
		RAFL09-12-N24	At5g54810 / tryptophan synthase, beta subunit 1 (TSB1)		At5g54810 ,RAFL09-12-N24 tryptophan synthase, beta subunit 1 (TSB1) identical to SP|P14671
		RAFL05-07-E06	At5g55100 / expressed protein		RAFL05-07-E06 ,At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein contains Pfam domain PF01805: Surp module
	1_29700001_30000000				4	261	14	4384	0.0165728	0.1823008	11
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL06-09-B20	At1g80400 / C3HC4-type zinc finger protein family		RAFL06-09-B20 ,At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus}; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
		RAFL09-16-B05	At1g79975 / expressed protein		At1g79975 ,RAFL09-16-B05 expressed protein
	3_2100001_2130000				2	263	2	4396	0.017887078	0.053661235	3
		RAFL09-11-P05	At3g06720 / importin alpha subunit		RAFL09-11-P05 ,At3g06720 importin alpha-1 subunit, putative (IMPA1) similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT:Q96321
		RAFL04-20-H12	At3g06670 / expressed protein		At3g06670 ,RAFL04-20-H12 expressed protein
	4_12480001_12510000				2	263	2	4396	0.017887078	0.053661235	3
		RAFL05-05-I21	At4g26940 / galactosyltransferase family		At4g26940 ,RAFL05-05-I21 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase
		RAFL05-18-M05	At4g26910 / dihydrolipoamide succinyltransferase -related		At4g26910 ,RAFL05-18-M05 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme
	1_26880001_26910000				2	263	3	4395	0.028701013	0.11480405	4
		RAFL09-16-J21	At1g72330 / alanine aminotransferase, putative		At1g72330 ,RAFL09-16-J21 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa
		RAFL06-07-P06	At1g72360 / ethylene responsive element binding factor (EREBP), putative		RAFL06-07-P06 ,At1g72360 ethylene-responsive element-binding protein, putative contains Pfam profile: PF00847 AP2 domain; similar to ethylene responsive element binding protein (GI:18496063)[Fagus sylvatica]
	1_16800001_17100000				2	263	4	4394	0.041455213	0.16582085	4
		RAFL06-13-N05	At1g47240 / NRAMP metal ion transporter 2, putative (NRAMP2)		RAFL06-13-N05 ,At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563
		RAFL09-09-J08	At1g47530 / ripening regulated protein, putative		RAFL09-09-J08 ,At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
	1_22200001_22500000				2	263	4	4394	0.041455213	0.20727606	5
		RAFL05-08-M04	At1g61740 / expressed protein		RAFL05-08-M04 ,At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI:4079631
		RAFL04-10-F21	At1g61250 / secretory carrier membrane protein		At1g61250 ,RAFL04-10-F21 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family
	2_17400001_17700000				3	262	12	4386	0.049681213	0.54649335	11
		RAFL09-10-C07	At2g42030 / C3HC4-type zinc finger protein family		At2g42030 ,RAFL09-10-C07 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL08-11-N21	At2g42270 / U5 small nuclear ribonucleoprotein helicase, putative		RAFL08-11-N21 ,At2g42270 U5 small nuclear ribonucleoprotein helicase, putative
		RAFL05-02-C24	At2g41900 / CCCH-type zinc finger protein -related		At2g41900 ,RAFL05-02-C24 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
	4_14100001_14400000				3	262	12	4386	0.049681213	0.59617454	12
		RAFL09-17-A12	At4g31340 / expressed protein		At4g31340 ,RAFL09-17-A12 myosin heavy chain-related contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo sapiens]
		RAFL05-17-E04	At4g31410 / expressed protein		At4g31410 ,RAFL05-17-E04 expressed protein
		RAFL05-12-L10	At4g31780 / 1,2-diacylglycerol 3-beta-galactosyltransferase (UDP-galactose:diacylglycerol galactosyltransferase) (MGDG synthase) (MGD1), putative		At4g31780 ,RAFL05-12-L10 1,2-diacylglycerol 3-beta-galactosyltransferase, putative / monogalactosyldiacylglycerol synthase, putative / MGDG synthase, putative similar to MGD synthase type A from Arabidopsis thaliana [gi:9927297], similar to monogalactosyldiacylglycerol synthase, Cucumis sativus, PID:g1805254
Cluster:1-2					A	B	C	D	P	P'	N
	5_5910001_5940000				5	169	2	4487	1.3512496E-6	2.7024992E-6	2
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
	5_180001_210000				5	169	3	4486	3.4945413E-6	1.0483624E-5	3
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
	4_7050001_7080000				4	170	1	4488	9.10167E-6	1.820334E-5	2
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
	1_27630001_27660000				4	170	2	4487	2.6508811E-5	5.3017622E-5	2
		RAFL03-09-C14	At1g74470 / geranylgeranyl reductase		RAFL03-09-C14 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-16-B07	At1g74470 / geranylgeranyl reductase		RAFL04-16-B07 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL08-12-D18	At1g74470 / geranylgeranyl reductase		RAFL08-12-D18 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-09-F13	At1g74470 / geranylgeranyl reductase		RAFL07-09-F13 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	5_1_300000				5	169	11	4478	2.1346682E-4	0.002348135	11
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
	4_6900001_7200000				5	169	11	4478	2.1346682E-4	0.002348135	11
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,RAFL09-11-K06 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
	5_3000001_6000000				15	159	148	4341	9.880872E-4	0.028654527	29
		RAFL07-18-K03	At5g11880 / diaminopimelate decarboxylase - like protein		At5g11880 ,RAFL07-18-K03 diaminopimelate decarboxylase, putative / DAP carboxylase, putative similar to diaminopimelate decarboxylase [Arabidopsis thaliana] GI:6562332; contains Pfam profiles PF02784: Pyridoxal-dependent decarboxylase pyridoxal binding domain, PF00278: Pyridoxal-dependent decarboxylase C-terminal sheet domain
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL09-07-P20	At5g15350 / plastocyanin-like domain containing protein		At5g15350 ,RAFL09-07-P20 plastocyanin-like domain-containing protein contains plastocyanin-like domain Pfam:PF02298
		RAFL09-10-I03	At5g13930 / chalcone synthase (naringenin-chalcone synthase)		At5g13930 ,RAFL09-10-I03 chalcone synthase / naringenin-chalcone synthase identical to SP|P13114
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-15-L15	At5g12250 / tubulin beta-6 chain (TUB6)		At5g12250 ,RAFL09-15-L15 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL05-07-G14	At5g16400 / thioredoxin, putative		At5g16400 ,RAFL05-07-G14 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin
		RAFL06-11-B12	At5g10840 / endomembrane protein 70, putative		RAFL06-11-B12 ,At5g10840 endomembrane protein 70, putative TM4 family;
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K24	At5g12860 / oxoglutarate/malate translocator, putative		RAFL11-01-K24 ,At5g12860 oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-15-J04	At5g11480 / GTP-binding protein -related		RAFL06-15-J04 ,At5g11480 expressed protein
	5_5700001_6000000				5	169	18	4471	0.0013294822	0.015953787	12
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
	2_1260001_1290000				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL09-14-N06	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL09-14-N06 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL05-03-E03	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL05-03-E03 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
	4_15480001_15510000				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL05-14-H02	At4g34620 / ribosomal protein S16p family		RAFL05-14-H02 ,At4g34620 ribosomal protein S16 family protein ribosomal protein S16, Neurospora crassa, PIR2:A29927
		RAFL07-16-I10	At4g34620 / ribosomal protein S16p family		RAFL07-16-I10 ,At4g34620 ribosomal protein S16 family protein ribosomal protein S16, Neurospora crassa, PIR2:A29927
	5_18270001_18300000				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
	5_18390001_18420000				2	172	0	4489	0.0013847064	0.0013847064	1
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
	1_26370001_26400000				2	172	1	4488	0.0040519224	0.008103845	2
		RAFL06-08-E11	At1g70890 / major latex protein (MLP)-related		RAFL06-08-E11 ,At1g70890 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294062] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-10-I20	At1g70940 / auxin transport protein, putative (PIN3)		RAFL09-10-I20 ,At1g70940 auxin transport protein, putative (PIN3) similar to auxin transport protein [Arabidopsis thaliana] gi|5817301|gb|AAD52695
	1_27600001_27900000				4	170	15	4474	0.004676684	0.04676684	10
		RAFL03-09-C14	At1g74470 / geranylgeranyl reductase		RAFL03-09-C14 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL04-16-B07	At1g74470 / geranylgeranyl reductase		RAFL04-16-B07 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL08-12-D18	At1g74470 / geranylgeranyl reductase		RAFL08-12-D18 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL07-09-F13	At1g74470 / geranylgeranyl reductase		RAFL07-09-F13 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
	1_10470001_10500000				3	171	8	4481	0.006753532	0.03376766	5
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
	5_26280001_26310000				2	172	2	4487	0.007905076	0.023715228	3
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,RAFL03-03-A07 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL11-12-B10 ,At5g66570 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
	5_3270001_3300000				2	172	2	4487	0.007905076	0.023715228	3
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
	4_6000001_9000000				9	165	86	4403	0.00847757	0.22041681	26
		RAFL04-16-C09	At4g17520 / nuclear RNA binding protein, putative		RAFL04-16-C09 ,At4g17520 nuclear RNA-binding protein, putative similar to nuclear RNA binding protein GI:6492264 from [Arabidopsis thaliana]
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,RAFL09-11-K06 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-14-M21	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-14-M21 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-09-I24	At4g15540 / nodulin MtN21 - related		At4g15540 ,RAFL04-09-I24 nodulin-related low similarity to MtN21 [Medicago truncatula] GI:2598575
		RAFL05-01-M18	At4g13510 / ammonium transport protein (AMT1)		RAFL05-01-M18 ,At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1;1) {Arabidopsis thaliana}
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
	Chromosome:5				52	122	965	3524	0.011277354	0.3721527	33
		RAFL07-18-K03	At5g11880 / diaminopimelate decarboxylase - like protein		At5g11880 ,RAFL07-18-K03 diaminopimelate decarboxylase, putative / DAP carboxylase, putative similar to diaminopimelate decarboxylase [Arabidopsis thaliana] GI:6562332; contains Pfam profiles PF02784: Pyridoxal-dependent decarboxylase pyridoxal binding domain, PF00278: Pyridoxal-dependent decarboxylase C-terminal sheet domain
		RAFL05-03-F16	At5g50940 / expressed gene		At5g50940 ,RAFL05-03-F16 expressed protein There's conflicting, but high quality data supporting a variety of gene structures. Each variant is presented here.
		RAFL02-07-H03	At5g10430 / arabinogalactan-protein (AGP4)		RAFL02-07-H03 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL07-16-C20 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL04-13-N12	At5g57490 / porin-related protein		RAFL04-13-N12 ,At5g57490 porin, putative similar to 36kDA porin II [Solanum tuberosum] GI:515360; contains Pfam profile PF01459: Eukaryotic porin
		RAFL09-07-P20	At5g15350 / plastocyanin-like domain containing protein		At5g15350 ,RAFL09-07-P20 plastocyanin-like domain-containing protein contains plastocyanin-like domain Pfam:PF02298
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C15 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-07-E13	At5g33320 / triose phosphate/phosphate translocator, putative		At5g33320 ,RAFL06-07-E13 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea}
		RAFL06-13-L16	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL06-13-L16 40S ribosomal protein S4 (RPS4B)
		RAFL09-06-G11	At5g57930 / expressed protein		At5g57930 ,RAFL09-06-G11 expressed protein
		RAFL09-10-I03	At5g13930 / chalcone synthase (naringenin-chalcone synthase)		At5g13930 ,RAFL09-10-I03 chalcone synthase / naringenin-chalcone synthase identical to SP|P13114
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-11-C22 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
		RAFL09-15-L15	At5g12250 / tubulin beta-6 chain (TUB6)		At5g12250 ,RAFL09-15-L15 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
		RAFL06-10-D03	At5g67510 / 60S ribosomal protein L26 (RPL26B)		At5g67510 ,RAFL06-10-D03 60S ribosomal protein L26 (RPL26B)
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL09-10-C09 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL05-13-F24	At5g55710 / expressed protein		RAFL05-13-F24 ,At5g55710 expressed protein
		RAFL06-16-L14	At5g48760 / 60S ribosomal protein L13A (RPL13aD)		RAFL06-16-L14 ,At5g48760 60S ribosomal protein L13A (RPL13aD)
		RAFL05-07-G14	At5g16400 / thioredoxin, putative		At5g16400 ,RAFL05-07-G14 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin
		RAFL05-07-F17	At5g19780 / tubulin alpha-3/alpha-5 chain (TUA5)		At5g19780 ,RAFL05-07-F17 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL07-08-E09	At5g49030 / isoleucyl-tRNA synthetase		RAFL07-08-E09 ,At5g49030 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
		RAFL06-11-B12	At5g10840 / endomembrane protein 70, putative		RAFL06-11-B12 ,At5g10840 endomembrane protein 70, putative TM4 family;
		RAFL04-18-N15	At5g23860 / beta tubulin		RAFL04-18-N15 ,At5g23860 tubulin beta-8 chain (TUB8) (TUBB8) identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-01-K15 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,RAFL03-03-A07 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL11-02-F17	At5g10430 / arabinogalactan-protein (AGP4)		RAFL11-02-F17 ,At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826
		RAFL05-03-L24	At5g60670 / 60S ribosomal protein L12 (RPL12C)		RAFL05-03-L24 ,At5g60670 60S ribosomal protein L12 (RPL12C) 60S RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana, PIR:T45883
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL06-15-G17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL08-10-G06 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL07-07-M17	At5g04140 / glutamate synthase (ferredoxin) (ferredoxin-dependent glutamate synthase/glu1/Fd-GOGAT 1)		RAFL07-07-M17 ,At5g04140 glutamate synthase (GLU1) / ferredoxin-dependent glutamate synthase (Fd-GOGAT 1) identical to ferredoxin-dependent glutamate synthase precursor [Arabidopsis thaliana] GI:3869251
		RAFL07-18-H17	At5g48300 / glucose-1-phosphate adenylyltransferase, small subunit, chloroplast (ADP-glucose pyrophosphorylase) (APS1)		At5g48300 ,RAFL07-18-H17 glucose-1-phosphate adenylyltransferase small subunit 1 (APS1) / ADP-glucose pyrophosphorylase (ADG1) identical to SP|P55228
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		RAFL11-12-B10 ,At5g66570 oxygen-evolving enhancer protein 1-1, chloroplast / 33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP:P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana]
		RAFL05-13-B09	At5g03300 / pfkB type carbohydrate kinase protein family		At5g03300 ,RAFL05-13-B09 adenosine kinase 2 (ADK2) contains Pfam profile: PF00294 pfkB family carbohydrate kinase; identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		RAFL11-03-I17 ,At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL06-12-D05 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL11-01-K24	At5g12860 / oxoglutarate/malate translocator, putative		RAFL11-01-K24 ,At5g12860 oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,RAFL11-06-L17 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS) identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}
		RAFL06-09-F20	At5g19770 / tubulin alpha-3/alpha-5 chain (TUA3)		At5g19770 ,RAFL06-09-F20 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL04-18-D08	At5g53490 / thylakoid lumenal 17.4 kD pentapeptide repeat family protein, chloroplast precursor		At5g53490 ,RAFL04-18-D08 thylakoid lumenal 17.4 kDa protein, chloroplast identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}
		RAFL06-15-E15	At5g28290 / protein kinase, putative		At5g28290 ,RAFL06-15-E15 protein kinase, putative similar to LSTK-1-like kinase [Lycopersicon esculentum] GI:15637110; contains Pfam profile: PF00069 Eukaryotic protein kinase domain
		RAFL11-02-K03	At5g18230 / expressed protein		At5g18230 ,RAFL11-02-K03 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2 / NOT3 / NOT5 family
		RAFL05-13-G24	At5g54600 / 50S ribosomal protein L24, chloroplast precursor (CL24)		At5g54600 ,RAFL05-13-G24 50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana}
		RAFL07-18-J10	At5g25610 / dehydration-induced protein RD22		At5g25610 ,RAFL07-18-J10 dehydration-responsive protein (RD22) identical to SP|Q08298 Dehydration-responsive protein RD22 precursor {Arabidopsis thaliana}
		RAFL07-17-M22	At5g61790 / calnexin 1 (CNX1)		At5g61790 ,RAFL07-17-M22 calnexin 1 (CNX1) identical to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]
		RAFL06-15-J04	At5g11480 / GTP-binding protein -related		RAFL06-15-J04 ,At5g11480 expressed protein
		RAFL05-18-H13	At5g65220 / ribosomal protein L29p family		RAFL05-18-H13 ,At5g65220 ribosomal protein L29 family protein contains Pfam profile PF00831: ribosomal protein L29
		RAFL05-02-B22	At5g22640 / expressed protein		RAFL05-02-B22 ,At5g22640 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat
		RAFL11-04-D23	At5g42765 / expressed protein		At5g42765 ,RAFL11-04-D23 expressed protein
		RAFL07-18-K16	At5g03760 / glycosyltransferase family 2		At5g03760 ,RAFL07-18-K16 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
	5_6660001_6690000				2	172	3	4486	0.012852948	0.051411793	4
		RAFL05-07-F17	At5g19780 / tubulin alpha-3/alpha-5 chain (TUA5)		At5g19780 ,RAFL05-07-F17 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
		RAFL06-09-F20	At5g19770 / tubulin alpha-3/alpha-5 chain (TUA3)		At5g19770 ,RAFL06-09-F20 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana}
	2_1200001_1500000				2	172	3	4486	0.012852948	0.051411793	4
		RAFL09-14-N06	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL09-14-N06 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL05-03-E03	At2g04030 / heat shock protein, putative		At2g04030 ,RAFL05-03-E03 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI:1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
	4_11730001_11760000				2	172	3	4486	0.012852948	0.038558844	3
		RAFL06-12-A10	At4g24770 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		RAFL06-12-A10 ,At4g24770 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
		RAFL06-13-H14	At4g24770 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		RAFL06-13-H14 ,At4g24770 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	1_10200001_10500000				4	170	22	4467	0.014724249	0.25031224	17
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
	1_8250001_8280000				2	172	4	4485	0.018809408	0.07523763	4
		RAFL05-14-F03	At1g23310 / alanine aminotransferase -related		RAFL05-14-F03 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
		RAFL07-12-E03	At1g23310 / alanine aminotransferase -related		RAFL07-12-E03 ,At1g23310 glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II
	1_3900001_4200000				3	171	14	4475	0.023616483	0.25978133	11
		RAFL07-12-L15	At1g12000 / pyrophosphate-fructose-6-phosphate 1-phosphotransferase -related		At1g12000 ,RAFL07-12-L15 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase
		RAFL09-10-E05	At1g12090 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At1g12090 ,RAFL09-10-E05 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
		RAFL09-16-M15	At1g11860 / aminomethyltransferase-related precursor protein		RAFL09-16-M15 ,At1g11860 aminomethyltransferase, putative similar to aminomethyltransferase, mitochondrial precursor SP:O49849 from [Flaveria anomala]
	1_15000001_15300000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-L21	At1g41880 / 60S ribosomal protein L35a (RPL35aB)		RAFL04-15-L21 ,At1g41880 60S ribosomal protein L35a (RPL35aB) identical to GB:CAB81600 from [Arabidopsis thaliana]
	3_240001_270000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-10-F10	At3g01690 / expressed protein		RAFL06-10-F10 ,At3g01690 expressed protein
	1_10380001_10410000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
	2_8790001_8820000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-20-C11	At2g20570 / golden2-related transcription factor (GLK1)		At2g20570 ,RAFL04-20-C11 golden2-like transcription factor (GLK1) identical to golden2-like transcription factor GI:13311003 from [Arabidopsis thaliana]; contains Pfam profile: PF00249 Myb-like DNA-binding domain
	4_4740001_4770000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-N07	At4g09040 / RNA recognition motif (RRM) - containing protein		At4g09040 ,RAFL04-15-N07 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	2_18960001_18990000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-12-P09	At2g46330 / arabinogalactan-protein (AGP16)		At2g46330 ,RAFL06-12-P09 arabinogalactan-protein (AGP16) identical to gi|10880509|gb|AAG24284
	5_22260001_22290000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-F24	At5g55710 / expressed protein		RAFL05-13-F24 ,At5g55710 expressed protein
	2_17310001_17340000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-B22	At2g41680 / thioredoxin reductase, putative		RAFL07-12-B22 ,At2g41680 thioredoxin reductase, putative / NADPH-dependent thioredoxin reductase, putative The last 2 exons encode thioredoxin. There is an EST match to exons 5-7, and the distance between exon 7 and exon 8 is only 90bp. It is unlikely this is two separate genes, but more likely a hybrid protein.
	1_25980001_26010000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL08-18-E07	At1g69980 / expressed protein		At1g69980 ,RAFL08-18-E07 expressed protein
	1_4590001_4620000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-13-M02	At1g13440 / glyceraldehyde-3-phosphate dehydrogenase -related		RAFL06-13-M02 ,At1g13440 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative very strong similarity to SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain
	5_19560001_19590000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-08-E09	At5g49030 / isoleucyl-tRNA synthetase		RAFL07-08-E09 ,At5g49030 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
	1_15180001_15210000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-L21	At1g41880 / 60S ribosomal protein L35a (RPL35aB)		RAFL04-15-L21 ,At1g41880 60S ribosomal protein L35a (RPL35aB) identical to GB:CAB81600 from [Arabidopsis thaliana]
	5_21420001_21450000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-18-D08	At5g53490 / thylakoid lumenal 17.4 kD pentapeptide repeat family protein, chloroplast precursor		At5g53490 ,RAFL04-18-D08 thylakoid lumenal 17.4 kDa protein, chloroplast identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}
	2_15060001_15090000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-02-N24	At2g36000 / expressed protein		At2g36000 ,RAFL05-02-N24 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF
	2_1890001_1920000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-10-D01	At2g05220 / 40S ribosomal protein S17 (RPS17B)		RAFL05-10-D01 ,At2g05220 40S ribosomal protein S17 (RPS17B)
	1_21090001_21120000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL11-13-H03	At1g58080 / ATP phosphoribosyl transferase		RAFL11-13-H03 ,At1g58080 ATP phosphoribosyl transferase 1 (ATP-PRT1) identical to ATP phosphoribosyl transferase GI:6683617 from [Arabidopsis thaliana]
	4_12060001_12090000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-10-P05	At4g25740 / 40S ribosomal protein S10 (RPS10A)		At4g25740 ,RAFL04-10-P05 40S ribosomal protein S10 (RPS10A) 40S ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
	1_3120001_3150000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-11-J01	At1g09690 / 60S ribosomal protein L21 (RPL21C)		RAFL06-11-J01 ,At1g09690 60S ribosomal protein L21 (RPL21C) Similar to ribosomal protein L21 (gb|L38826). ESTs gb|AA395597,gb|ATTS5197 come from this gene
	5_21870001_21900000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-G24	At5g54600 / 50S ribosomal protein L24, chloroplast precursor (CL24)		At5g54600 ,RAFL05-13-G24 50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana}
	2_13920001_13950000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-08-M06	At2g32970 / expressed protein		At2g32970 ,RAFL07-08-M06 expressed protein
	1_4020001_4050000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-L15	At1g12000 / pyrophosphate-fructose-6-phosphate 1-phosphotransferase -related		At1g12000 ,RAFL07-12-L15 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase
	2_16740001_16770000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-10-A01	At2g40210 / MADS-box protein		RAFL06-10-A01 ,At2g40210 MADS-box family protein contains Pfam profile: PF00319 SRF-type transcription factor (DNA-binding and dimerisation domain)
	5_22980001_23010000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-13-N12	At5g57490 / porin-related protein		RAFL04-13-N12 ,At5g57490 porin, putative similar to 36kDA porin II [Solanum tuberosum] GI:515360; contains Pfam profile PF01459: Eukaryotic porin
	4_6810001_6840000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-01-M18	At4g13510 / ammonium transport protein (AMT1)		RAFL05-01-M18 ,At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1;1) {Arabidopsis thaliana}
	5_12360001_12390000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-07-E13	At5g33320 / triose phosphate/phosphate translocator, putative		At5g33320 ,RAFL06-07-E13 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea}
	1_2610001_2640000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-16-H06	At1g08360 / 60S ribosomal protein L10A (RPL10aA)		At1g08360 ,RAFL04-16-H06 60S ribosomal protein L10A (RPL10aA) similar to 60S ribosomal protein L10A GB:AAC73045 GI:3860277 from [Arabidopsis thaliana]
	1_15990001_16020000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-21-I19	At1g43670 / fructose 1,6-bisphosphatase -related		RAFL05-21-I19 ,At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative very strong similarity to SP|P46267 Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) {Brassica napus}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
	5_24090001_24120000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-03-L24	At5g60670 / 60S ribosomal protein L12 (RPL12C)		RAFL05-03-L24 ,At5g60670 60S ribosomal protein L12 (RPL12C) 60S RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana, PIR:T45883
	1_870001_900000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-14-F01	At1g03600 / photosystem II protein family		At1g03600 ,RAFL05-14-F01 photosystem II family protein similar to SP:P74367 {Synechocystis sp.}; similar to ESTs emb|Z27038, gb|AA451546, emb|Z29876, gb|T45359 and gb|R90316
	1_5880001_5910000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-11-E10	At1g17220 / translation initiation factor IF-2, chloroplast precursor		RAFL09-11-E10 ,At1g17220 translation initiation factor IF-2, chloroplast, putative similar to SP|P57997|IF2C_PHAVU Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) {Phaseolus vulgaris}
	2_14790001_14820000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-12-E13	At2g35260 / expressed protein		At2g35260 ,RAFL09-12-E13 expressed protein
	3_5610001_5640000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-02-D20	At3g16520 / glycosyltransferase family		At3g16520 ,RAFL05-02-D20 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
	4_1410001_1440000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-13-C07	At4g03280 / Rieske FeS protein (component of cytochrome B6-F complex)		At4g03280 ,RAFL06-13-C07 cytochrome B6-F complex iron-sulfur subunit, chloroplast / Rieske iron-sulfur protein / plastoquinol-plastocyanin reductase (petC) identical to gi:9843639; identical to cDNA rieske iron-sulfur protein precursor (petC) GI:5725449
	4_17280001_17310000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-12-G24	At4g39400 / brassinosteroid insensitive 1 (BRI1)		RAFL07-12-G24 ,At4g39400 brassinosteroid insensitive 1 (BRI1) identical to GI:2392895
	5_8880001_8910000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-18-J10	At5g25610 / dehydration-induced protein RD22		At5g25610 ,RAFL07-18-J10 dehydration-responsive protein (RD22) identical to SP|Q08298 Dehydration-responsive protein RD22 precursor {Arabidopsis thaliana}
	5_780001_810000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-13-B09	At5g03300 / pfkB type carbohydrate kinase protein family		At5g03300 ,RAFL05-13-B09 adenosine kinase 2 (ADK2) contains Pfam profile: PF00294 pfkB family carbohydrate kinase; identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
	1_1500001_1530000				1	173	0	4489	0.037315033	0.037315033	1
		RAFL09-15-H22	At1g05190 / ribosomal protein L6p family		At1g05190 ,RAFL09-15-H22 ribosomal protein L6 family protein Similar to Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698 come from this gene
	1_9000001_12000000				9	165	107	4382	0.039779697	1.193391	30
		RAFL05-01-F04	At1g30380 / photosystem I subunit X precursor		At1g30380 ,RAFL05-01-F04 photosystem I reaction center subunit psaK, chloroplast, putative / photosystem I subunit X, putative / PSI-K, putative (PSAK) identical to SP|Q9SUI5; strong similarity to SP|P36886 Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (Light-harvesting complex I 7 kDa protein){Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL04-12-J05	At1g32990 / ribosomal protein L11p family		RAFL04-12-J05 ,At1g32990 ribosomal protein L11 family protein similar to chloroplast ribosomal protein L11 GI:21312 from [Spinacia oleracea]
		RAFL08-10-P13	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-10-P13 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL09-12-E12	At1g27480 / expressed protein		At1g27480 ,RAFL09-12-E12 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to LCAT-like lysophospholipase (LLPL) [Homo sapiens] GI:4589720; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase)
		RAFL05-03-J07	At1g27400 / 60S ribosomal protein L17 (RPL17A)		At1g27400 ,RAFL05-03-J07 60S ribosomal protein L17 (RPL17A) similar to GB:P51413 from [Arabidopsis thaliana]; similar to ESTs gb|L33542 and gb|AA660016
		RAFL04-18-B02	At1g31420 / leucine-rich repeat transmembrane protein kinase, putative		RAFL04-18-B02 ,At1g31420 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profile: PF00069: Eukaryotic protein kinase domain
		RAFL11-06-J20	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL11-06-J20 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL08-09-P03	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL08-09-P03 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL04-17-F04	At1g29700 / expressed protein		At1g29700 ,RAFL04-17-F04 expressed protein
	5_18000001_18300000				2	172	7	4482	0.041940216	0.2516413	6
		RAFL05-04-J09	At5g45775 / 60S ribosomal protein L11 (RPL11D)		At5g45775 ,RAFL05-04-J09 60S ribosomal protein L11 (RPL11D)
		RAFL11-10-E06	At5g45775 / 60S ribosomal protein L11 (RPL11D)		RAFL11-10-E06 ,At5g45775 60S ribosomal protein L11 (RPL11D)
	5_18300001_18600000				2	172	7	4482	0.041940216	0.33552173	8
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		At5g46110 ,RAFL03-06-H04 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		RAFL08-12-B15 ,At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
Cluster:5-0					A	B	C	D	P	P'	N
	5_8460001_8490000				5	72	0	4586	1.0777667E-9	1.0777667E-9	1
		RAFL08-11-G08	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-11-G08 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-15-M16	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-15-M16 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL06-11-F24	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL06-11-F24 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-I23	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-I23 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-N14	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-N14 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
	5_22380001_22410000				5	72	1	4585	6.383303E-9	1.2766606E-8	2
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
	5_22200001_22500000				5	72	7	4579	7.7957714E-7	6.236617E-6	8
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
	5_8400001_8700000				5	72	9	4577	1.9202305E-6	1.7282075E-5	9
		RAFL08-11-G08	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-11-G08 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-15-M16	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-15-M16 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL06-11-F24	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL06-11-F24 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-I23	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-I23 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
		RAFL08-10-N14	At5g24770 / vegetative storage protein Vsp2		At5g24770 ,RAFL08-10-N14 vegetative storage protein 2 (VSP2) identical to SP|O82122 Vegetative storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
	4_10440001_10470000				3	74	1	4585	1.7120063E-5	3.4240125E-5	2
		RAFL06-08-A17	At4g21650 / subtilisin proteinase - like		RAFL06-08-A17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-13-C17	At4g21650 / subtilisin proteinase - like		RAFL09-13-C17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-06-N06	At4g21650 / subtilisin proteinase - like		RAFL09-06-N06 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
	5_18120001_18150000				2	75	0	4586	2.6919477E-4	2.6919477E-4	1
		RAFL07-11-O11	At5g45430 / protein kinase, putative		At5g45430 ,RAFL07-11-O11 protein kinase, putative contains similarity to male germ cell-associated kinase [Homo sapiens] gi|23268497|gb|AAN16405
		RAFL07-18-J19	At5g45500 / expressed protein		At5g45500 ,RAFL07-18-J19 expressed protein weak similarity to resistance complex protein I2C-2 [Lycopersicon esculentum] GI:2258317
	4_10200001_10500000				3	74	11	4575	0.001382601	0.01382601	10
		RAFL06-08-A17	At4g21650 / subtilisin proteinase - like		RAFL06-08-A17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-13-C17	At4g21650 / subtilisin proteinase - like		RAFL09-13-C17 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
		RAFL09-06-N06	At4g21650 / subtilisin proteinase - like		RAFL09-06-N06 ,At4g21650 subtilase family protein contains Pfam domain, PF00082: Subtilase family; contains Pfam domain, PF02225: protease associated (PA) domain
	2_1800001_2100000				2	75	6	4580	0.00706652	0.04239912	6
		RAFL04-14-C14	At2g05100 / light-harvesting chlorophyll a/b binding protein		RAFL04-14-C14 ,At2g05100 chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-01-K24	At2g05620 / expressed protein		RAFL05-01-K24 ,At2g05620 expressed protein
	5_18000001_18300000				2	75	7	4579	0.008988767	0.053932603	6
		RAFL07-11-O11	At5g45430 / protein kinase, putative		At5g45430 ,RAFL07-11-O11 protein kinase, putative contains similarity to male germ cell-associated kinase [Homo sapiens] gi|23268497|gb|AAN16405
		RAFL07-18-J19	At5g45500 / expressed protein		At5g45500 ,RAFL07-18-J19 expressed protein weak similarity to resistance complex protein I2C-2 [Lycopersicon esculentum] GI:2258317
	3_9000001_12000000				5	72	74	4512	0.0093790805	0.21571885	23
		RAFL05-10-E23	At3g27820 / monodehydroascorbate reductase, putative		At3g27820 ,RAFL05-10-E23 monodehydroascorbate reductase, putative similar to cytosolic monodehydroascorbate reductase GB:BAA77214 [Oryza sativa]
		RAFL07-12-I09	At3g29240 / chloroplast lumen common protein family		At3g29240 ,RAFL07-12-I09 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
		RAFL05-18-K22	At3g26450 / major latex protein (MLP)-related		RAFL05-18-K22 ,At3g26450 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL09-16-M01	At3g25830 / myrcene/ocimene synthase, putative		At3g25830 ,RAFL09-16-M01 myrcene/ocimene synthase, putative similar to myrcene/ocimene synthase [Arabidopsis thaliana] GI:9957293; contains Pfam profiles PF03936: Terpene synthase family, metal binding domain, PF01397: Terpene synthase, N-terminal domain
		RAFL08-19-G11	At3g28270 / At14a		At3g28270 ,RAFL08-19-G11 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
	4_9270001_9300000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-11-L18	At4g18810 / expressed protein		RAFL05-11-L18 ,At4g18810 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364
	2_15150001_15180000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-11-K10	At2g36270 / ABA-responsive element binding protein, putative		At2g36270 ,RAFL06-11-K10 bZIP transcription factor family protein / ABA-responsive element-binding protein, putative similar to ABA-responsive element binding protein 1 (AREB1) GI:9967417 from [Arabidopsis thaliana]; contains a bZIP transcription factor basic domain signature (PDOC00036)
	1_29550001_29580000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-08-E22	At1g79550 / phosphoglycerate kinase -related		RAFL06-08-E22 ,At1g79550 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
	2_1800001_1830000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-14-C14	At2g05100 / light-harvesting chlorophyll a/b binding protein		RAFL04-14-C14 ,At2g05100 chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	2_16980001_17010000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-18-L20	At2g40890 / cytochrome P450 98A3		RAFL05-18-L20 ,At2g40890 cytochrome P450 98A3, putative (CYP98A3) identical to Cytochrome P450 98A3 (SP|O22203) [Arabidopsis thaliana]; similar to gi:17978651 from Pinus taeda
	1_19650001_19680000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-08-P09	At1g53750 / 26S proteasome AAA-ATPase subunit RPT1a		RAFL06-08-P09 ,At1g53750 26S proteasome AAA-ATPase subunit (RPT1a) similar to 26S proteasome ATPase subunit GI:1395190 from [Spinacia oleracea]
	3_9420001_9450000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL09-16-M01	At3g25830 / myrcene/ocimene synthase, putative		At3g25830 ,RAFL09-16-M01 myrcene/ocimene synthase, putative similar to myrcene/ocimene synthase [Arabidopsis thaliana] GI:9957293; contains Pfam profiles PF03936: Terpene synthase family, metal binding domain, PF01397: Terpene synthase, N-terminal domain
	2_1770001_1800000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL09-06-E05	At2g05070 / light-harvesting chlorophyll a/b binding protein		At2g05070 ,RAFL09-06-E05 chlorophyll A-B binding protein / LHCII type II (LHCB2.2) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741946; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	1_16350001_16380000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-16-G14	At1g44446 / chlorophyll a oxygenase (chlorophyll b synthase)		At1g44446 ,RAFL04-16-G14 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain
	1_8910001_8940000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL06-11-K13	At1g25440 / CONSTANS B-box zinc finger family protein		At1g25440 ,RAFL06-11-K13 zinc finger (B-box type) family protein similar to zinc finger protein GI:3618318 from [Oryza sativa]
	3_10530001_10560000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL08-19-G11	At3g28270 / At14a		At3g28270 ,RAFL08-19-G11 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
	2_2070001_2100000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL05-01-K24	At2g05620 / expressed protein		RAFL05-01-K24 ,At2g05620 expressed protein
	1_20700001_20730000				1	76	0	4586	0.016512975	0.016512975	1
		RAFL04-09-J19	At1g56450 / 20S proteasome beta subunit G1 (PBG1)		RAFL04-09-J19 ,At1g56450 20S proteasome beta subunit G1 (PBG1) (PRCH) identical to 20S proteasome beta subunit (PBG1) GI:3421123 [Arabidopsis thaliana]; identical to cDNA proteasome subunit prch GI:2511597
	2_9300001_9330000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL11-05-A04	At2g21970 / stress enhanced protein 2 (SEP2); nuclear gene for chloroplast product		At2g21970 ,RAFL11-05-A04 stress enhanced protein 2 (SEP2) nearly identical to stress enhanced protein 2; SEP2 (GI:7384980) [Arabidopsis thaliana]
	3_22470001_22500000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-07-P18	At3g60820 / 20S proteasome beta subunit F1 (PBF1)		RAFL06-07-P18 ,At3g60820 20S proteasome beta subunit F1 (PBF1)
	3_6990001_7020000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL08-08-I01	At3g20100 / cytochrome P450 family		At3g20100 ,RAFL08-08-I01 cytochrome P450 family protein similar to Cytochrome P450 93A3 (P450 CP5) (SP:O81973) [Glycine max]; contains Pfam profile: PF00067 cytochrome P450; supported by full-length cDNA: Ceres:149380.
	3_5760001_5790000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-17-C14	At3g16910 / AMP-dependent synthetase and ligase family		RAFL05-17-C14 ,At3g16910 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 7 AMPBP7 (AMPBP7) GI:20799722
	3_2310001_2340000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL04-17-J04	At3g07310 / expressed protein		RAFL04-17-J04 ,At3g07310 expressed protein
	2_17610001_17640000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-11-I16	At2g42490 / copper amine oxidase -related		At2g42490 ,RAFL05-11-I16 copper amine oxidase, putative similar to copper methylamine oxidase precursor (MAOXII) [Arthrobacter sp.] SWISS-PROT:Q07123
	3_20130001_20160000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-15-L23	At3g54360 / RING finger - like protein		At3g54360 ,RAFL06-15-L23 expressed protein DNA-binding Mel-18 protein, Homo sapiens, PIR:JN0717
	1_22800001_22830000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-16-L12	At1g62560 / flavin-containing monooxygenase (FMO) family		At1g62560 ,RAFL09-16-L12 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase GB:AAA21178 GI:349534 SP|P32417 from [Oryctolagus cuniculus]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like
	3_19290001_19320000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-15-E16	At3g52060 / expressed protein		At3g52060 ,RAFL09-15-E16 expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266
	5_20400001_20430000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-12-P13	At5g50850 / pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (PDHE1-B) (sp Q38799)		At5g50850 ,RAFL06-12-P13 pyruvate dehydrogenase E1 component beta subunit, mitochondrial / PDHE1-B (PDH2) identical to SP|Q38799 Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) {Arabidopsis thaliana}
	5_26010001_26040000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL07-10-I24	At5g65720 / NifS-related aminotranfserase		At5g65720 ,RAFL07-10-I24 cysteine desulfurase, mitochondrial (NIFS) identical to Cysteine desulfurase, mitochondrial precursor (SP:O49543) {Arabidopsis thaliana}; identical to cDNA GI:12656131; contains Pfam profile PF00266: aminotransferase, class V
	5_16590001_16620000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-04-D03	At5g42270 / FtsH protease, putative		RAFL05-04-D03 ,At5g42270 FtsH protease, putative similar to FtsH protease GI:13183728 from [Medicago sativa]
	3_9660001_9690000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-18-K22	At3g26450 / major latex protein (MLP)-related		RAFL05-18-K22 ,At3g26450 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
	1_18720001_18750000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-08-G22	At1g51610 / cation efflux family protein/metal tolerance protein, putative (MTPc4)		RAFL05-08-G22 ,At1g51610 cation efflux family protein / metal tolerance protein, putative (MTPc4) member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563
	3_19140001_19170000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-12-D06	At3g51600 / nonspecific lipid transfer protein 5 (LTP 5)		At3g51600 ,RAFL06-12-D06 nonspecific lipid transfer protein 5 (LTP5) identical to SP|Q9XFS7 Nonspecific lipid-transfer protein 5 (LTP 5) {Arabidopsis thaliana}
	5_4170001_4200000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-04-K23	At5g13180 / No apical meristem (NAM) protein family		RAFL05-04-K23 ,At5g13180 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; hypothetical protein SENU5, senescence up-regulated - Lycopersicon esculentum, EMBL:Z75524
	1_2070001_2100000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-16-P20	At1g06760 / histone H1, putative		At1g06760 ,RAFL05-16-P20 histone H1, putative similar to histone H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana]; identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560
	1_9300001_9330000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-09-N14	At1g26920 / expressed protein		RAFL06-09-N14 ,At1g26920 expressed protein Location of EST 228A16T7A, gb|N65686
	5_25650001_25680000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL09-06-I01	At5g64940 / ABC transporter-related		RAFL09-06-I01 ,At5g64940 ABC1 family protein contains Pfam domain, PF03109: ABC1 family
	3_11190001_11220000				1	76	1	4585	0.032756753	0.06551351	2
		RAFL07-12-I09	At3g29240 / chloroplast lumen common protein family		At3g29240 ,RAFL07-12-I09 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
	1_3510001_3540000				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-07-M15	At1g10670 / ATP citrate-lyase -related		At1g10670 ,RAFL07-07-M15 expressed protein
	5_540001_570000				1	76	2	4584	0.04873567	0.09747134	2
		RAFL09-16-G01	At5g02480 / expressed protein		RAFL09-16-G01 ,At5g02480 expressed protein p
	1_5580001_5610000				1	76	2	4584	0.04873567	0.146207	3
		RAFL05-18-C23	At1g16320 / expressed protein		RAFL05-18-C23 ,At1g16320 expressed protein ESTs gb|T76348, gb|N65615 and gb|Z18119 come from this gene
	2_13110001_13140000				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-12-E19	At2g30950 / FtsH protease (VAR2)		RAFL07-12-E19 ,At2g30950 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI:7650138 from [Arabidopsis thaliana]
	2_7470001_7500000				1	76	2	4584	0.04873567	0.09747134	2
		RAFL08-14-M16	At2g17340 / expressed protein		RAFL08-14-M16 ,At2g17340 pantothenate kinase-related contains Pfam domain, PF01937: Protein of unknown function; supported by tandem duplication of pantothenate kinase -related protein (TIGR_Ath1:At2g17320) [Arabidopsis thaliana]
	3_22650001_22680000				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-08-A21	At3g61220 / short-chain dehydrogenase/reductase family protein		At3g61220 ,RAFL07-08-A21 short-chain dehydrogenase/reductase (SDR) family protein similar to carbonyl reductase GI:1049108 from [Mus musculus]
	1_29700001_29730000				1	76	2	4584	0.04873567	0.146207	3
		RAFL06-09-J06	At1g79920 / heat shock protein hsp70, putative		RAFL06-09-J06 ,At1g79920 heat shock protein 70, putative / HSP70, putative contains Pfam profile: PF00012 Heat shock hsp70 proteins; similar to heat-shock proteins GB:CAA94389, GB:AAD55461 [Arabidopsis thaliana]
	5_26580001_26610000				1	76	2	4584	0.04873567	0.146207	3
		RAFL09-17-H02	At5g67370 / expressed protein		RAFL09-17-H02 ,At5g67370 expressed protein similar to unknown protein (gb|AAC18972.1)
Cluster:6-2					A	B	C	D	P	P'	N
	5_24600001_24630000				3	173	1	4486	2.0567402E-4	4.1134804E-4	2
		RAFL05-05-M22	At5g61990 / pentatricopeptide (PPR) repeat-containing protein		At5g61990 ,RAFL05-05-M22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL07-10-G12	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL07-10-G12 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-10-G12
		RAFL04-09-J03	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL04-09-J03 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-09-J03
	2_9000001_12000000				11	165	91	4396	0.0014492914	0.042029448	29
		RAFL02-03-H08	At2g26670 / heme oxygenase 1 (HO1)		At2g26670 ,RAFL02-03-H08 heme oxygenase 1 (HO1) (HY1) identical to plastid heme oxygenase (HY1) [Arabidopsis thaliana] GI:4877362, heme oxygenase 1 [Arabidopsis thaliana] GI:4530591 GB:AF132475; annotation updated per Seth J. Davis at University of Wisconsin-Madison
		RAFL05-07-G15	At2g27730 / expressed protein		At2g27730 ,RAFL05-07-G15 expressed protein contains 1 transmembrane domain; similar to Unknown mitochondrial protein At2g27730 (Swiss-Prot:Q9ZUX4) [Arabidopsis thaliana] similar to F1F0-ATPase inhibitor protein (GI:5821432) [Oryza sativa]
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
		RAFL05-09-N13	At2g21380 / kinesin-related protein		RAFL05-09-N13 ,At2g21380 kinesin motor protein-related
		RAFL04-19-D24	At2g23070 / casein kinase II alpha chain, putative		At2g23070 ,RAFL04-19-D24 casein kinase II alpha chain, putative similar to casein kinase II, alpha chain (CK II) [Zea mays] SWISS-PROT:P28523; contains protein kinase domain, Pfam:PF00069
		RAFL04-20-M06	At2g27260 / expressed protein		At2g27260 ,RAFL04-20-M06 expressed protein
		RAFL02-03-L07	At2g26250 / beta-ketoacyl-CoA synthase family (FIDDLEHEAD) (FDH)		At2g26250 ,RAFL02-03-L07 beta-ketoacyl-CoA synthase family (FIDDLEHEAD) (FDH) identical to GB:AJ010713 (fiddlehead protein)
		RAFL05-17-H03	At2g25430 / expressed protein		RAFL05-17-H03 ,At2g25430 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain;
		RAFL05-09-N19	At2g25850 / poly(A) polymerase -related		At2g25850 ,RAFL05-09-N19 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain; identical to cDNA GI:31747890
		RAFL08-11-P15	At2g25520 / phosphate translocator-related		At2g25520 ,RAFL08-11-P15 phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275
		RAFL02-07-O01	At2g24270 / NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative		RAFL02-07-O01 ,At2g24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase [NADP+]) [Nicotiana plumbaginifolia] SWISS-PROT:P93338
	5_24600001_24900000				4	172	14	4473	0.003961362	0.04357498	11
		RAFL05-05-M22	At5g61990 / pentatricopeptide (PPR) repeat-containing protein		At5g61990 ,RAFL05-05-M22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL07-10-G12	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL07-10-G12 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-10-G12
		RAFL05-13-L11	At5g62630 / expressed protein		RAFL05-13-L11 ,At5g62630 expressed protein
		RAFL04-09-J03	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL04-09-J03 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-09-J03
	3_2460001_2490000				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL04-16-E03	At3g07790 / expressed protein		RAFL04-16-E03 ,At3g07790 DGCR14-related similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot:Q96DF8) [Homo sapiens]
		RAFL08-16-C13	At3g07780 / expressed protein		RAFL08-16-C13 ,At3g07780 expressed protein
	3_8940001_8970000				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL08-11-J15	At3g24550 / protein kinase -related		RAFL08-11-J15 ,At3g24550 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
		RAFL11-07-N23	At3g24550 / protein kinase -related		RAFL11-07-N23 ,At3g24550 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
	3_19740001_19770000				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL04-16-D08	At3g53260 / phenylalanine ammonia-lyase (PAL2)		At3g53260 ,RAFL04-16-D08 phenylalanine ammonia-lyase 2 (PAL2) nearly identical to SP|P45724
		RAFL09-11-L22	At3g53260 / phenylalanine ammonia-lyase (PAL2)		At3g53260 ,RAFL09-11-L22 phenylalanine ammonia-lyase 2 (PAL2) nearly identical to SP|P45724
	4_17220001_17250000				2	174	2	4485	0.008083649	0.024250947	3
		RAFL04-12-A03	At4g39220 / AtRer1A		RAFL04-12-A03 ,At4g39220 RER1A protein identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana}
		RAFL02-09-D23	At4g39200 / 40S ribosomal protein S25 (RPS25E)		RAFL02-09-D23 ,At4g39200 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2:S40089
	5_26400001_26700000				3	173	14	4473	0.024334893	0.3163536	13
		RAFL05-16-L13	At5g67360 / subtilisin-like serine protease ARA12		RAFL05-16-L13 ,At5g67360 cucumisin-like serine protease (ARA12) Asp48; almost identical to cucumisin-like serine protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
		RAFL08-11-K21	At5g67250 / SKP1 interacting partner 2 (SKIP2)		RAFL08-11-K21 ,At5g67250 SKP1 interacting partner 2 (SKIP2) identical to SKP1 interacting partner 2 GI:10716949 from [Arabidopsis thaliana]
		RAFL09-18-J08	At5g67560 / ADP-ribosylation factor, putative		RAFL09-18-J08 ,At5g67560 ADP-ribosylation factor, putative identical to GP:15450888 ADP-ribosylation factor-like protein {Arabidopsis thaliana]
	2_10200001_10500000				2	174	5	4482	0.026250903	0.10500361	4
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
		RAFL02-07-O01	At2g24270 / NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative		RAFL02-07-O01 ,At2g24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase [NADP+]) [Nicotiana plumbaginifolia] SWISS-PROT:P93338
	1_28800001_28830000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-15-D11	At1g77610 / glucose-6-phosphate/phosphate translocator-related		At1g77610 ,RAFL09-15-D11 glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate-translocators from [Mesembryanthemum crystallinum] GI:9295277, [Solanum tuberosum] GI:2997593, [Pisum sativum] GI:2997591; contains Pfam profile PF00892: Integral membrane protein
	3_22770001_22800000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-06-F17	At3g61580 / delta-8 sphingolipid desaturase (SLD1)		RAFL09-06-F17 ,At3g61580 delta-8 sphingolipid desaturase (SLD1) identical to delta-8 sphingolipid desaturase GI:3819710 from [Arabidopsis thaliana]; contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding domain
	1_26040001_26070000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-L07	At1g70100 / expressed protein		RAFL05-09-L07 ,At1g70100 expressed protein
	2_12720001_12750000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-J07	At2g29970 / expressed protein		RAFL04-15-J07 ,At2g29970 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689
	2_1560001_1590000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-09-C19	At2g04520 / translation initiation factor eIF-1A -related		At2g04520 ,RAFL04-09-C19 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative strong similarity to translation initiation factor (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam profile PF01176: Eukaryotic initiation factor 1A
	4_7170001_7200000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-13-K22	At4g14300 / heterogeneous nuclear ribonucleoprotein (hnRNP), putative		At4g14300 ,RAFL05-13-K22 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative
	4_7950001_7980000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-13-M21	At4g15880 / Ulp1 protease family		At4g15880 ,RAFL05-13-M21 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; low similarity to sentrin/SUMO-specific protease [Homo sapiens] GI:6906859; identical to cDNA hypothetical protein, partial (1189 bp) GI:2326349
	5_3300001_3330000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-N21	At5g10540 / oligopeptidase A - like protein		At5g10540 ,RAFL05-09-N21 peptidase M3 family protein / thimet oligopeptidase family protein similar to SP|P27237 Oligopeptidase A (EC 3.4.24.70) {Salmonella typhimurium}; contains Pfam profile PF01432: Peptidase family M3
	1_11910001_11940000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL06-16-E18	At1g32920 / expressed protein		RAFL06-16-E18 ,At1g32920 expressed protein
	1_23640001_23670000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL02-07-B18	At1g64590 / short-chain dehydrogenase/reductase family protein		RAFL02-07-B18 ,At1g64590 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily
	2_10290001_10320000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-O18	At2g24360 / serine/threonine/tyrosine kinase, putative		At2g24360 ,RAFL05-07-O18 serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734
	2_11610001_11640000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-20-M06	At2g27260 / expressed protein		At2g27260 ,RAFL04-20-M06 expressed protein
	3_5070001_5100000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-05-A18	At3g15070 / C3HC4-type zinc finger protein family		At3g15070 ,RAFL05-05-A18 zinc finger (C3HC4-type RING finger) family protein similar to C-terminal zinc-finger [Glycine max] GI:558543; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
	4_12630001_12660000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-10-H05	At4g27350 / membrane lipo protein lipid attachment site-containing expressed protein		At4g27350 ,RAFL05-10-H05 expressed protein
	5_18930001_18960000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-12-G20	At5g47420 / expressed protein		RAFL08-12-G20 ,At5g47420 expressed protein contains Pfam domain, PF01987: Protein of unknown function
	1_22620001_22650000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-17-L12	At1g62180 / phosphoadenylyl-sulfate reductase (thioredoxin) (PAPS reductase), putative		At1g62180 ,RAFL09-17-L12 5'-adenylylsulfate reductase 2, chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate 5'-adenylylsulfate (APS) sulfotransferase 2 / 3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase homolog 43 (PRH-43) identical to SP|P92981 5'-adenylylsulfate reductase 2, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin independent APS reductase 2) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS reductase homolog (PRH43) GI:1710115
	3_18540001_18570000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-I18	At3g50000 / casein kinase II alpha chain 2		At3g50000 ,RAFL05-09-I18 casein kinase II alpha chain 2 identical to casein kinase II, alpha chain 2 (CK II) [Arabidopsis thaliana] SWISS-PROT:Q08466
	5_240001_270000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-20-N19	At5g01710 / expressed protein		At5g01710 ,RAFL05-20-N19 expressed protein
	5_7590001_7620000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-J09	At5g22860 / prolylcarboxypeptidase-related protein		At5g22860 ,RAFL05-07-J09 serine carboxypeptidase S28 family protein contains Pfam profile: PF05577 serine carboxypeptidase S28
	1_8430001_8460000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-09-I21	At1g23880 / expressed protein		At1g23880 ,RAFL08-09-I21 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat
	2_2280001_2310000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-10-N22	At2g05940 / protein kinase, putative		RAFL08-10-N22 ,At2g05940 protein kinase, putative similar to auxin-regulated dual specificity cytosolic kinase [Lycopersicon esculentum] gi|14484938|gb|AAK62821
	5_9330001_9360000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-F14	At5g26751 / shaggy-related protein kinase alpha		At5g26751 ,RAFL04-15-F14 shaggy-related protein kinase alpha / ASK-alpha (ASK1) identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from [Arabidopsis thaliana]
	1_3900001_3930000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-03-G09	At1g11630 / pentatricopeptide (PPR) repeat-containing protein		At1g11630 ,RAFL05-03-G09 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
	1_25830001_25860000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-02-H04	At1g69680 / expressed protein		At1g69680 ,RAFL05-02-H04 expressed protein similar to MOG1 isoform A (GI:9864064) [Homo sapiens]
	1_12090001_12120000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-17-B19	At1g33390 / helicase domain-containing protein		At1g33390 ,RAFL08-17-B19 helicase domain-containing protein similar to kurz protein [Drosophila melanogaster] GI:5869803; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
	1_5310001_5340000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-07-B17	At1g15500 / adenine nucleotide translocase -related		RAFL09-07-B17 ,At1g15500 chloroplast ADP, ATP carrier protein, putative / ADP, ATP translocase, putative / adenine nucleotide translocase, putative strong similarity to SP|Q39002 Chloroplast ADP,ATP carrier protein 1, chloroplast precursor (ADP/ATP translocase 1) (Adenine nucleotide translocase 1) {Arabidopsis thaliana}; contains Pfam profile PF03219: TLC ATP/ADP transporter
	1_17370001_17400000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-14-A14	At1g48210 / serine/threonine protein kinase, putative		RAFL05-14-A14 ,At1g48210 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 [Lycopersicon esculentum] gi|3668069|gb|AAC61805; contains protein kinase domain, Pfam:PF00069
	5_19380001_19410000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-G13	At5g48580 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase, putative		RAFL05-09-G13 ,At5g48580 FK506-binding protein 2-2 (FKBP15-2) / immunophilin / peptidyl-prolyl cis-trans isomerase / rotamase identical to SP|Q38936| FK506-binding protein 2-2 precursor (EC 5.2.1.8);
	5_15150001_15180000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-01-F03	At5g38590 / F-box protein family		At5g38590 ,RAFL05-01-F03 F-box family protein contains F-box domain Pfam:PF00646
	1_11370001_11400000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-14-F21	At1g31780 / expressed protein		At1g31780 ,RAFL05-14-F21 conserved oligomeric Golgi complex component-related / COG complex component-related similar to Conserved oligomeric Golgi complex component 6 (Swiss-Prot:Q9Y2V7) [Homo sapiens];
	3_16500001_16530000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-05-F06	At3g45100 / n-acetylglucosaminyl-phosphatidylinositol biosynthetic protein, putative		At3g45100 ,RAFL05-05-F06 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein, putative similar to PIG-A from Mus musculus [gi:577723[, Homo sapiens [SP|P37287]; contains Pfam glycosyl transferase, group 1 family protein domain PF00534
	1_19350001_19380000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-A21	At1g53090 / WD-40 repeat protein family		RAFL05-08-A21 ,At1g53090 WD-40 repeat family protein / phytochrome A-related contains 7 WD-40 repeats (PF00400) (1 below cutoff); similar to phytochrome A supressor spa1 (GI:4809171) [Arabidopsis thaliana]
	3_23370001_23400000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-F15	At3g63270 / expressed protein		RAFL05-07-F15 ,At3g63270 expressed protein
	4_12870001_12900000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-14-N02	At4g27960 / ubiquitin-conjugating enzyme 9 (UBC9)		At4g27960 ,RAFL04-14-N02 ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883
	1_9750001_9780000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL03-05-O03	At1g28050 / CONSTANS B-box zinc finger family protein		At1g28050 ,RAFL03-05-O03 zinc finger (B-box type) family protein
	1_930001_960000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL09-17-L19	At1g03740 / protein kinase family		RAFL09-17-L19 ,At1g03740 protein kinase family protein contains protein kinase domain, Pfam:PF00069
	5_14760001_14790000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL02-08-J13	At5g37830 / 5-oxoprolinase -related protein		RAFL02-08-J13 ,At5g37830 hydantoinase/oxoprolinase family protein contains Pfam profiles: PF02538 hydantoinase B/oxoprolinase, PF01968 hydantoinase/oxoprolinase, PF05378 hydantoinase/oxoprolinase N-terminal region
	5_13710001_13740000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-02-H10	At5g35840 / phytochrome C (PHYC)		RAFL05-02-H10 ,At5g35840 phytochrome C (PHYC) identical to SP|P14714 Phytochrome C {Arabidopsis thaliana}
	1_7470001_7500000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-N09	At1g21380 / expressed protein		At1g21380 ,RAFL05-07-N09 VHS domain-containing protein / GAT domain-containing protein weak similarity to Hrs [Rattus norvegicus] GI:8547026; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain
	2_17280001_17310000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-B18	At2g41620 / expressed protein		RAFL05-07-B18 ,At2g41620 nucleoporin interacting component family protein contains Pfam profile PF04097: Nucleoporin interacting component
	1_5520001_5550000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-13-G15	At1g16170 / expressed protein		At1g16170 ,RAFL04-13-G15 expressed protein
	5_20790001_20820000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-I02	At5g51940 / DNA-directed RNA polymerase II subunit-related protein		RAFL05-07-I02 ,At5g51940 DNA-directed RNA polymerase II, putative similar to SP|O88828 DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) {Rattus norvegicus}; contains Pfam profile PF01192: RNA polymerases K / 14 to 18 kDa subunit
	3_21420001_21450000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-01-B07	At3g57880 / C2 domain-containing protein		At3g57880 ,RAFL05-01-B07 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain
	2_5610001_5640000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-09-H04	At2g13610 / ABC transporter family protein		At2g13610 ,RAFL05-09-H04 ABC transporter family protein
	5_19530001_19560000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-L12	At5g48930 / anthranilate N-hydroxycinnamoyl/benzoyltransferase family		RAFL04-15-L12 ,At5g48930 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus [GI:3288180, GI:2239091]; contains Pfam profile PF02458 transferase family
	2_7710001_7740000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-O16	At2g17870 / glycine-rich, zinc-finger DNA-binding protein -related		RAFL05-08-O16 ,At2g17870 cold-shock DNA-binding family protein contains Pfam domains, PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle
	5_3060001_3090000				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-08-E04	At5g09900 / 26S proteasome regulatory subunit (RPN5), putative		At5g09900 ,RAFL05-08-E04 26S proteasome regulatory subunit, putative (RPN5) p55 protein-like
	2_10800001_11100000				2	174	7	4480	0.042826395	0.29978478	7
		RAFL05-09-N19	At2g25850 / poly(A) polymerase -related		At2g25850 ,RAFL05-09-N19 nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain; identical to cDNA GI:31747890
		RAFL08-11-P15	At2g25520 / phosphate translocator-related		At2g25520 ,RAFL08-11-P15 phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275
	4_17100001_17400000				3	173	19	4468	0.048056807	0.8169657	17
		RAFL04-12-A03	At4g39220 / AtRer1A		RAFL04-12-A03 ,At4g39220 RER1A protein identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana}
		RAFL07-09-H03	At4g38900 / bZIP protein		At4g38900 ,RAFL07-09-H03 bZIP protein vsf-1 protein, Lycopersicon esculentum, PIR2:S52203
		RAFL02-09-D23	At4g39200 / 40S ribosomal protein S25 (RPS25E)		RAFL02-09-D23 ,At4g39200 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2:S40089
Cluster:6-0					A	B	C	D	P	P'	N
	4_9900001_10200000				3	137	6	4517	0.001948424	0.013638968	7
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
	3_9810001_9840000				2	138	1	4522	0.0026325006	0.005265001	2
		RAFL06-15-H18	At3g26740 / light regulated protein -related		At3g26740 ,RAFL06-15-H18 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
		RAFL05-02-K03	At3g26740 / light regulated protein -related		At3g26740 ,RAFL05-02-K03 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
	4_9900001_9930000				2	138	1	4522	0.0026325006	0.005265001	2
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
	1_26400001_26700000				3	137	7	4516	0.0027225881	0.019058116	7
		RAFL08-09-C08	At1g71070 / N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme family)		At1g71070 ,RAFL08-09-C08 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glucosaminyl (N-acetyl) transferase GB:4758422 from [Homo sapiens]
		RAFL05-18-P09	At1g71695 / peroxidase, putative		RAFL05-18-P09 ,At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) identical to SP|Q96520 Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) {Arabidopsis thaliana}
		RAFL04-20-C09	At1g71780 / expressed protein		RAFL04-20-C09 ,At1g71780 expressed protein
	4_9000001_12000000				9	131	95	4428	0.0037356832	0.104599126	28
		RAFL09-09-G01	At4g19840 / lectin-related		At4g19840 ,RAFL09-09-G01 lectin-related similar to PP2 lectin polypeptide [Cucurbita maxima] GI:410437
		RAFL05-01-C20	At4g23670 / major latex protein (MLP)-related		At4g23670 ,RAFL05-01-C20 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family
		RAFL04-10-E08	At4g25500 / arginine/serine-rich splicing factor RSp40		At4g25500 ,RAFL04-10-E08 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana}
		RAFL06-16-E03	At4g20260 / endomembrane-associated protein		At4g20260 ,RAFL06-16-E03 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL04-18-D10	At4g24520 / NADPH-ferrihemoprotein reductase (NADPH-cytochrome p450 reductase), putative		At4g24520 ,RAFL04-18-D10 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-ferrihemoprotein reductase NADPH-cytochrome P450 oxydoreductase isoform 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183562, SP|P37116 NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR) [Vigna radiata] {Phaseolus aureus}
		RAFL04-18-L18	At4g24120 / expressed protein		At4g24120 ,RAFL04-18-L18 transporter, putative similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] GI:10770865; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
		RAFL11-12-C05	At4g20260 / endomembrane-associated protein		RAFL11-12-C05 ,At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide
		RAFL09-17-I10	At4g19110 / protein kinase, putative		At4g19110 ,RAFL09-17-I10 protein kinase, putative contains protein kinase domain, Pfam:PF00069
	2_9720001_9750000				2	138	2	4521	0.005161324	0.015483973	3
		RAFL09-11-N16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-11-N16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
		RAFL09-14-O16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-14-O16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
	4_17100001_17130000				2	138	2	4521	0.005161324	0.015483973	3
		RAFL07-18-C21	At4g38920 / H+-pumping ATPase 16 kDa proteolipid, vacuolar (ava-p1)		RAFL07-18-C21 ,At4g38920 vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 3 (AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C
		RAFL07-12-A07	At4g38920 / H+-pumping ATPase 16 kDa proteolipid, vacuolar (ava-p1)		RAFL07-12-A07 ,At4g38920 vacuolar ATP synthase 16 kDa proteolipid subunit 3 / V-ATPase 16 kDa proteolipid subunit 3 (AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C
	1_29280001_29310000				2	138	4	4519	0.012401914	0.062009573	5
		RAFL09-18-I11	At1g78820 / curculin-like (mannose-binding) lectin family		At1g78820 ,RAFL09-18-I11 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
		RAFL09-06-A15	At1g78820 / curculin-like (mannose-binding) lectin family		RAFL09-06-A15 ,At1g78820 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
	5_25380001_25410000				2	138	5	4518	0.017023228	0.10213937	6
		RAFL06-16-H01	At5g64200 / arginine/serine-rich splicing factor SC35		At5g64200 ,RAFL06-16-H01 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
		RAFL06-11-N06	At5g64200 / arginine/serine-rich splicing factor SC35		RAFL06-11-N06 ,At5g64200 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
	1_11400001_11700000				2	138	7	4516	0.028056826	0.16834095	6
		RAFL07-15-L13	At1g32050 / secretory carrier membrane protein -related		At1g32050 ,RAFL07-15-L13 secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family
		RAFL09-06-F07	At1g31910 / expressed protein		RAFL09-06-F07 ,At1g31910 GHMP kinase family protein contains TIGRFAM profile TIGR01219: phosphomevalonate kinase; contains Pfam PF00288: GHMP kinases putative ATP-binding protein domain; similar to Phosphomevalonate kinase (EC 2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
	2_9600001_9900000				2	138	7	4516	0.028056826	0.22445461	8
		RAFL09-11-N16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-11-N16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
		RAFL09-14-O16	At2g22990 / serine carboxypeptidase -related		At2g22990 ,RAFL09-14-O16 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618
	2_6780001_6810000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-04-A22	At2g15690 / expressed protein		At2g15690 ,RAFL05-04-A22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
	1_18060001_18090000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL03-06-G11	At1g49970 / ATP-dependent Clp protease proteolytic subunit (ClpR1)		At1g49970 ,RAFL03-06-G11 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069 GI:5360595 from [Arabidopsis thaliana]; identical to cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
	3_19770001_19800000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-08-J21	At3g53370 / expressed protein		RAFL05-08-J21 ,At3g53370 DNA-binding S1FA family protein contains Pfam profile: PF04689 DNA binding protein S1FA
	1_21690001_21720000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-A17	At1g59900 / pyruvate dehydrogenase e1 alpha subunit -related		At1g59900 ,RAFL09-17-A17 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A) identical to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana}
	5_24420001_24450000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-18-J12	At5g61450 / expressed protein		RAFL04-18-J12 ,At5g61450 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus]
	1_7590001_7620000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-08-E02	At1g21680 / expressed protein		RAFL05-08-E02 ,At1g21680 expressed protein similar to TolB protein precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and gb|N65244 come from this gene
	4_11970001_12000000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-10-E08	At4g25500 / arginine/serine-rich splicing factor RSp40		At4g25500 ,RAFL04-10-E08 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana}
	5_120001_150000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-08-J06	At5g01350 / expressed protein		RAFL08-08-J06 ,At5g01350 expressed protein
	1_11430001_11460000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-06-F07	At1g31910 / expressed protein		RAFL09-06-F07 ,At1g31910 GHMP kinase family protein contains TIGRFAM profile TIGR01219: phosphomevalonate kinase; contains Pfam PF00288: GHMP kinases putative ATP-binding protein domain; similar to Phosphomevalonate kinase (EC 2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
	1_2910001_2940000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-I10	At1g09100 / 26S protease regulatory subunit 6A		RAFL08-09-I10 ,At1g09100 26S protease regulatory subunit 6A, putative identical to SP:O04019 from [Arabidopsis thaliana]
	3_10080001_10110000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-20-J16	At3g27300 / glucose-6-phosphate 1-dehydrogenase -related		RAFL04-20-J16 ,At3g27300 glucose-6-phosphate 1-dehydrogenase / G6PD (ACG9) identical to glucose-6-phosphate 1-dehydrogenase (acg9) [Arabidopsis thaliana] GI:5732195
	2_17940001_17970000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL11-05-N18	At2g43400 / electron transfer flavo protein ubiquinone oxidoreductase -related		At2g43400 ,RAFL11-05-N18 electron transfer flavoprotein-ubiquinone oxidoreductase family protein contains Pfam profile: PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase
	5_9150001_9180000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-C18	At5g26260 / expressed protein		At5g26260 ,RAFL09-17-C18 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
	5_1680001_1710000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-19-J21	At5g05690 / cytochrome p450 90A1		RAFL04-19-J21 ,At5g05690 cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD) identical to Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
	3_5820001_5850000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL03-03-I07	At3g17100 / bHLH protein		At3g17100 ,RAFL03-03-I07 expressed protein
	2_1710001_1740000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-09-E11	At2g04900 / expressed protein		At2g04900 ,RAFL06-09-E11 expressed protein
	3_8400001_8430000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-13-I08	At3g23490 / cyanate lyase (CYN)		RAFL06-13-I08 ,At3g23490 cyanate lyase family contains Pfam profile: PF02560 cyanate lyase C-terminal domain
	5_18450001_18480000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-08-E04	At5g46250 / RNA recognition motif (RRM) - containing protein		At5g46250 ,RAFL08-08-E04 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	2_1170001_1200000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-A06	At2g03890 / phosphatidylinositol 3- and 4-kinase family		At2g03890 ,RAFL08-09-A06 phosphatidylinositol 3- and 4-kinase family protein low similarity to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
	3_6120001_6150000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-12-B20	At3g17940 / aldose 1-epimerase family		RAFL04-12-B20 ,At3g17940 aldose 1-epimerase family protein similar to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149] from [Acinetobacter calcoaceticus]; contains Pfam profile PF01263 Aldose 1-epimerase
	3_15390001_15420000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL08-09-C07	At3g43520 / expressed protein		At3g43520 ,RAFL08-09-C07 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136)
	1_7140001_7170000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-13-G24	At1g20620 / catalase 3		RAFL09-13-G24 ,At1g20620 catalase 3 (SEN2) almost identical to catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis thaliana]; identical to catalase 3 (SEN2) mRNA, partial cds GI:3158369
	5_22710001_22740000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL11-07-J10	At5g56870 / glycosyl hydrolase family 35 (beta-galactosidase)		RAFL11-07-J10 ,At5g56870 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor GI:3869280 from [Carica papaya]
	3_22050001_22080000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-17-C18	At3g59690 / expressed protein		At3g59690 ,RAFL04-17-C18 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif
	4_9390001_9420000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-I10	At4g19110 / protein kinase, putative		At4g19110 ,RAFL09-17-I10 protein kinase, putative contains protein kinase domain, Pfam:PF00069
	3_9900001_9930000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL07-08-A14	At3g26890 / expressed protein		RAFL07-08-A14 ,At3g26890 expressed protein
	4_10110001_10140000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL05-19-A14	At4g20850 / expressed protein		RAFL05-19-A14 ,At4g20850 subtilase family protein contains similarity to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II) (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo sapiens]
	1_19890001_19920000				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-15-K18	At1g54410 / dehydrin protein family		RAFL06-15-K18 ,At1g54410 dehydrin family protein contains Pfam domain, PF00257: Dehydrin
	3_300001_600000				3	137	21	4502	0.033808403	0.54093444	16
		RAFL07-09-O22	At3g02090 / mitochondrial processing peptidase -related		RAFL07-09-O22 ,At3g02090 mitochondrial processing peptidase beta subunit, putative similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP [Human] SWISS-PROT:O75439
		RAFL08-17-M09	At3g02200 / expressed protein		At3g02200 ,RAFL08-17-M09 proteasome family protein contains Pfam domain, PF01399: PCI domain
		RAFL09-16-C01	At3g02720 / protease-related		At3g02720 ,RAFL09-16-C01 DJ-1 family protein / protease-related similar to Intracellular Protease [Pyrococcus horikoshii] GI:11513902; contains Pfam profile: PF01965 ThiJ/PfpI family
	1_29100001_29400000				3	137	22	4501	0.037596792	0.6015487	16
		RAFL09-18-I11	At1g78820 / curculin-like (mannose-binding) lectin family		At1g78820 ,RAFL09-18-I11 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
		RAFL05-17-L16	At1g79010 / NADH dehydrogenase -related		RAFL05-17-L16 ,At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) identical to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD) {Arabidopsis thaliana}
		RAFL09-06-A15	At1g78820 / curculin-like (mannose-binding) lectin family		RAFL09-06-A15 ,At1g78820 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
	3_16800001_17100000				2	138	9	4514	0.04121896	0.24731375	6
		RAFL11-05-E17	At3g46000 / actin depolymerizing factor 2 (ADF2)		RAFL11-05-E17 ,At3g46000 actin-depolymerizing factor, putative (ADF2) strong similarity to SP|Q9ZSK3 Actin-depolymerizing factor 4 (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam profile PF00241: Cofilin/tropomyosin-type actin-binding protein
		RAFL08-18-K01	At3g45770 / oxidoreductase, zinc-binding dehydrogenase family		At3g45770 ,RAFL08-18-K01 oxidoreductase, zinc-binding dehydrogenase family protein similar to nuclear receptor binding factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724; contains Pfam zinc-binding dehydrogenase domain PF00107
	3_9600001_9900000				2	138	9	4514	0.04121896	0.37097064	9
		RAFL06-15-H18	At3g26740 / light regulated protein -related		At3g26740 ,RAFL06-15-H18 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
		RAFL05-02-K03	At3g26740 / light regulated protein -related		At3g26740 ,RAFL05-02-K03 light responsive protein-related similar to light regulated protein precursor SP:Q03200 [Oryza sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol. 26 (1), 165-173 (1994))
	3_9900001_10200000				2	138	10	4513	0.048507567	0.38806054	8
		RAFL04-20-J16	At3g27300 / glucose-6-phosphate 1-dehydrogenase -related		RAFL04-20-J16 ,At3g27300 glucose-6-phosphate 1-dehydrogenase / G6PD (ACG9) identical to glucose-6-phosphate 1-dehydrogenase (acg9) [Arabidopsis thaliana] GI:5732195
		RAFL07-08-A14	At3g26890 / expressed protein		RAFL07-08-A14 ,At3g26890 expressed protein
	1_18000001_18300000				2	138	10	4513	0.048507567	0.48507568	10
		RAFL05-13-P07	At1g50480 / formate-tetrahydrofolate ligase (10-formyltetrahydrofolate synthetase)		At1g50480 ,RAFL05-13-P07 formate--tetrahydrofolate ligase / 10-formyltetrahydrofolate synthetase (THFS) identical to 10-formyltetrahydrofolate synthetase (Arabidopsis thaliana) GI:5921663
		RAFL03-06-G11	At1g49970 / ATP-dependent Clp protease proteolytic subunit (ClpR1)		At1g49970 ,RAFL03-06-G11 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069 GI:5360595 from [Arabidopsis thaliana]; identical to cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
Cluster:10-0					A	B	C	D	P	P'	N
	1_19200001_19230000				4	20	0	4639	5.401052E-10	5.401052E-10	1
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	5_20940001_20970000				3	21	0	4639	1.1985192E-7	1.1985192E-7	1
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
	1_19200001_19500000				4	20	12	4627	9.432309E-7	8.489078E-6	9
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	2_17100001_17130000				2	22	0	4639	2.5392263E-5	2.5392263E-5	1
		RAFL05-09-P10	At2g41190 / amino acid transporter family		RAFL05-09-P10 ,At2g41190 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
		RAFL05-20-J01	At2g41190 / amino acid transporter family		At2g41190 ,RAFL05-20-J01 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
	5_20700001_21000000				3	21	10	4629	3.3136865E-5	2.6509492E-4	8
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
	2_17100001_17400000				2	22	9	4630	0.0013575538	0.01086043	8
		RAFL05-09-P10	At2g41190 / amino acid transporter family		RAFL05-09-P10 ,At2g41190 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
		RAFL05-20-J01	At2g41190 / amino acid transporter family		At2g41190 ,RAFL05-20-J01 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI:2587061; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II
	1_18000001_21000000				4	20	120	4519	0.0033508611	0.10052583	30
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	3_22920001_22950000				1	23	0	4639	0.005146901	0.005146901	1
		RAFL11-01-J18	At3g61890 / homeobox-leucine zipper protein ATHB-12 (HD-Zip transcription factor Athb-12)		RAFL11-01-J18 ,At3g61890 homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 identical to homeobox-leucine zipper protein ATHB-12 (GI:6899887) [Arabidopsis thaliana]
	3_5280001_5310000				1	23	0	4639	0.005146901	0.005146901	1
		RAFL05-09-G08	At3g15670 / late embryogenesis abundant (LEA) protein, putative		At3g15670 ,RAFL05-09-G08 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	1_5760001_5790000				1	23	1	4638	0.01026841	0.02053682	2
		RAFL05-21-F13	At1g16850 / expressed protein		At1g16850 ,RAFL05-21-F13 expressed protein
	1_1530001_1560000				1	23	1	4638	0.01026841	0.02053682	2
		RAFL06-10-C16	At1g05340 / expressed protein		RAFL06-10-C16 ,At1g05340 expressed protein
	1_17880001_17910000				1	23	1	4638	0.01026841	0.02053682	2
		RAFL05-16-F03	At1g49450 / transducin / WD-40 repeat protein family		RAFL05-16-F03 ,At1g49450 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to En/Spm-like transposon protein GI:2739374 from [Arabidopsis thaliana]; no characterized homologs
	5_18000001_21000000				3	21	98	4541	0.014348622	0.43045866	30
		RAFL05-11-I09	At5g52300 / low-temperature-induced 65 kD protein (sp|Q04980)		RAFL05-11-I09 ,At5g52300 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana}
		RAFL07-11-M21	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		At5g52310 ,RAFL07-11-M21 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
		RAFL04-17-F01	At5g52310 / low-temperature-induced protein 78 (sp|Q06738)		RAFL04-17-F01 ,At5g52310 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
	1_15780001_15810000				1	23	2	4637	0.015364647	0.04609394	3
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
	2_14070001_14100000				1	23	2	4637	0.015364647	0.04609394	3
		RAFL08-16-M12	At2g33380 / RD20 protein		RAFL08-16-M12 ,At2g33380 calcium-binding RD20 protein (RD20) induced by abscisic acid during dehydration PMID:10965948; putative transmembrane channel protein PMID:10965948; identical to GI:10862968 [Arabidopsis thaliana]; contains EF-hand domain
	1_7080001_7110000				1	23	4	4635	0.02548178	0.07644533	3
		RAFL09-17-M11	At1g20450 / dehydrin (ERD10)		RAFL09-17-M11 ,At1g20450 dehydrin (ERD10) identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) [Arabidopsis thaliana] SWISS-PROT:P42759
	5_750001_780000				1	23	4	4635	0.02548178	0.05096356	2
		RAFL08-13-F10	At5g03210 / expressed protein		RAFL08-13-F10 ,At5g03210 expressed protein
	4_12660001_12690000				1	23	5	4634	0.030502912	0.12201165	4
		RAFL08-14-A19	At4g27410 / No apical meristem (NAM) protein family		At4g27410 ,RAFL08-14-A19 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403
	1_15000001_18000000				2	22	55	4584	0.034115184	0.81876445	24
		RAFL05-16-F03	At1g49450 / transducin / WD-40 repeat protein family		RAFL05-16-F03 ,At1g49450 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to En/Spm-like transposon protein GI:2739374 from [Arabidopsis thaliana]; no characterized homologs
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
	1_1500001_1800000				1	23	6	4633	0.035499245	0.21299548	6
		RAFL06-10-C16	At1g05340 / expressed protein		RAFL06-10-C16 ,At1g05340 expressed protein
	1_15600001_15900000				1	23	7	4632	0.0404709	0.2832963	7
		RAFL06-08-H20	At1g43160 / AP2 domain transcription factor RAP2.6		RAFL06-08-H20 ,At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI:2281637 from [Arabidopsis thaliana]
Cluster:4-2					A	B	C	D	P	P'	N
	5_22620001_22650000				2	133	0	4528	8.321486E-4	8.321486E-4	1
		RAFL04-13-A16	At5g56600 / profilin 5		At5g56600 ,RAFL04-13-A16 profilin 5 (PRO5) (PRF3) identical to SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
		RAFL04-18-L19	At5g56670 / 40S ribosomal protein S30 (RPS30C)		RAFL04-18-L19 ,At5g56670 40S ribosomal protein S30 (RPS30C)
	1_21840001_21870000				2	133	1	4527	0.0024489556	0.004897911	2
		RAFL04-19-B12	At1g60230 / expressed protein		At1g60230 ,RAFL04-19-B12 radical SAM domain-containing protein contains Pfam profile PF04055: radical SAM domain protein
		RAFL07-11-G02	At1g60220 / Ulp1 protease family		At1g60220 ,RAFL07-11-G02 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain
	1_28230001_28260000				2	133	2	4526	0.004804949	0.014414847	3
		RAFL09-17-G19	At1g76180 / dehydrin -related		RAFL09-17-G19 ,At1g76180 dehydrin (ERD14) identical to SP|P42763 Dehydrin ERD14 {Arabidopsis thaliana}
		RAFL05-16-M10	At1g76200 / expressed protein		RAFL05-16-M10 ,At1g76200 expressed protein
	5_22500001_22800000				3	132	10	4518	0.005485695	0.038399864	7
		RAFL04-13-A16	At5g56600 / profilin 5		At5g56600 ,RAFL04-13-A16 profilin 5 (PRO5) (PRF3) identical to SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
		RAFL05-09-E07	At5g57030 / lycopene epsilon cyclase		RAFL05-09-E07 ,At5g57030 lycopene epsilon cyclase identical to lycopene epsilon cyclase [GI:1399181]
		RAFL04-18-L19	At5g56670 / 40S ribosomal protein S30 (RPS30C)		RAFL04-18-L19 ,At5g56670 40S ribosomal protein S30 (RPS30C)
	5_19800001_20100000				2	133	3	4525	0.007856598	0.023569794	3
		RAFL02-04-I05	At5g49540 / expressed protein		RAFL02-04-I05 ,At5g49540 expressed protein contains Pfam profile PF05646: Protein of unknown function (DUF786)
		RAFL05-16-L10	At5g49970 / expressed protein		At5g49970 ,RAFL05-16-L10 pyridoxamine 5'-phosphate oxidase-related contains weak similarity to Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx). (Swiss-Prot:P28225) [Shigella flexneri]
	2_13950001_13980000				2	133	3	4525	0.007856598	0.023569794	3
		RAFL04-09-L21	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-09-L21 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL06-12-H10	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL06-12-H10 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
	5_3900001_4200000				3	132	15	4513	0.014082317	0.18307012	13
		RAFL06-07-J02	At5g12150 / expressed protein		RAFL06-07-J02 ,At5g12150 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein weak similarity to glucocorticoid receptor DNA binding factor 1 [Canis familiaris] GI:23266717; contains Pfam profiles PF00169: PH domain, PF00620: RhoGAP domain
		RAFL05-03-O05	At5g12260 / expressed protein		RAFL05-03-O05 ,At5g12260 expressed protein
		RAFL04-14-K23	At5g12370 / expressed protein		At5g12370 ,RAFL04-14-K23 exocyst complex component Sec10-related low similarity to SP|O00471 Exocyst complex component Sec10 (hSec10) {Homo sapiens}
	1_21600001_21900000				2	133	5	4523	0.015882019	0.09529211	6
		RAFL04-19-B12	At1g60230 / expressed protein		At1g60230 ,RAFL04-19-B12 radical SAM domain-containing protein contains Pfam profile PF04055: radical SAM domain protein
		RAFL07-11-G02	At1g60220 / Ulp1 protease family		At1g60220 ,RAFL07-11-G02 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain
	2_19200001_19500000				3	132	17	4511	0.018863719	0.24522835	13
		RAFL04-15-F08	At2g47080 / unknown similar to AGI		At2g47080 ,RAFL04-15-F08 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-15-F08
		RAFL02-05-J09	At2g47110 / ubiquitin extension protein (UBQ6)/40S ribosomal protein S27A (RPS27aB)		RAFL02-05-J09 ,At2g47110 ubiquitin extension protein 6 (UBQ6) / 40S ribosomal protein S27A (RPS27aB) identical to GI:166936
		RAFL05-04-F08	At2g47610 / 60S ribosomal protein L7A (RPL7aA)		RAFL05-04-F08 ,At2g47610 60S ribosomal protein L7A (RPL7aA)
	1_2400001_2430000				2	133	7	4521	0.02621311	0.20970488	8
		RAFL11-02-D23	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL11-02-D23 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
		RAFL09-17-F16	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL09-17-F16 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
	2_14460001_14490000				2	133	7	4521	0.02621311	0.13106555	5
		RAFL02-10-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL02-10-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL02-08-C17	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL02-08-C17 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
	5_5700001_6000000				3	132	20	4508	0.027520001	0.33024	12
		RAFL05-12-F21	At5g17770 / NADH-cytochrome b5 reductase		At5g17770 ,RAFL05-12-F21 NADH-cytochrome b5 reductase identical to NADH-cytochrome b5 reductase [Arabidopsis thaliana] GI:4240116
		RAFL04-14-P20	At5g17710 / chloroplast GrpE protein		RAFL04-14-P20 ,At5g17710 co-chaperone grpE family protein similar to co-chaperone CGE1 precursor isoform a [Chlamydomonas reinhardtii] GI:15384277; contains Pfam profile PF01025: co-chaperone GrpE
		RAFL09-07-F07	At5g17670 / expressed protein		At5g17670 ,RAFL09-07-F07 expressed protein
	4_12810001_12840000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-21-B15	At4g27800 / Protein phosphatase 2C PPH1 (PPH1) (PP2C)		RAFL05-21-B15 ,At4g27800 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) identical to SP|P49599|P2C3_ARATH Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis thaliana}; similar to protein phosphatase-2C; PP2C (GI:3643090) [Mesembryanthemum crystallinum]
	5_25860001_25890000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-19-G11	At5g65430 / 14-3-3 protein GF14 kappa (grf8)		RAFL05-19-G11 ,At5g65430 14-3-3 protein GF14 kappa (GRF8) identical to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from [Arabidopsis thaliana]
	4_5070001_5100000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-19-A10	At4g09670 / AX110P -related protein		RAFL05-19-A10 ,At4g09670 oxidoreductase family protein similar to AX110P [Daucus carota] GI:285739; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
	3_7860001_7890000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-15-L10	At3g22300 / 40S ribosomal protein S10, mitochondrial precursor		At3g22300 ,RAFL04-15-L10 40S ribosomal protein S10, mitochondrial (RPS10) identical to SP|P42797 40S ribosomal protein S10, mitochondrial precursor {Arabidopsis thaliana}
	2_1050001_1080000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-01-A17	At2g03480 / dehydration-induced protein-related		RAFL05-01-A17 ,At2g03480 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase; non-consensus GA donor site at exon 4
	3_4500001_4530000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-10-F19	At3g13750 / glycosyl hydrolase family 35 (beta-galactosidase)		At3g13750 ,RAFL04-10-F19 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor SP:P48980 from [Lycopersicon esculentum]
	5_6600001_6630000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-17-L09	At5g19590 / expressed protein		At5g19590 ,RAFL04-17-L09 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
	1_12360001_12390000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-07-M02	At1g34030 / 40S ribosomal protein S18 (RPS18B)		At1g34030 ,RAFL05-07-M02 40S ribosomal protein S18 (RPS18B) similar to ribosomal protein S18 GI:38422 from [Homo sapiens]
	5_6060001_6090000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-08-B08	At5g18380 / 40S ribosomal protein S16 (RPS16C)		At5g18380 ,RAFL05-08-B08 40S ribosomal protein S16 (RPS16C)
	2_6330001_6360000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-18-H16	At2g14910 / expressed protein		RAFL04-18-H16 ,At2g14910 expressed protein
	4_13770001_13800000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-09-O24	At4g30270 / xyloglucan endotransglycosylase (meri5B)		RAFL04-09-O24 ,At4g30270 MERI-5 protein (MERI-5) (MERI5B) / endo-xyloglucan transferase / xyloglucan endo-1,4-beta-D-glucanase (SEN4) identical to endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5 protein precursor (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis thaliana}
	3_23010001_23040000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-19-C07	At3g62120 / multifunctional aminoacyl-tRNA ligase-related protein		At3g62120 ,RAFL04-19-C07 tRNA synthetase class II (G, H, P and S) family protein similar to SP|P07814 Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] {Homo sapiens}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF03129: Anticodon binding domain
	5_16050001_16080000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-16-I11	At5g40810 / cytochrome c1 precursor		At5g40810 ,RAFL05-16-I11 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS-PROT:P25076
	1_18180001_18210000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL08-16-K08	At1g50250 / chloroplast FtsH protease		RAFL08-16-K08 ,At1g50250 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell division protein ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) [Arabidopsis thaliana]
	1_8850001_8880000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-18-F07	At1g25260 / expressed protein		RAFL05-18-F07 ,At1g25260 acidic ribosomal protein P0-related contains similarity to 60S acidic ribosomal protein GI:5815233 from [Homo sapiens]
	3_22410001_22440000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-07-O06	At3g60620 / phosphatidate cytidylyltransferase domain-containing protein		At3g60620 ,RAFL05-07-O06 phosphatidate cytidylyltransferase family protein contains Pfam profile: PF01148 phosphatidate cytidylyltransferase
	5_24660001_24690000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL06-13-P21	At5g62130 / expressed protein		At5g62130 ,RAFL06-13-P21 Per1-like protein-related
	5_17310001_17340000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL07-10-D18	At5g43830 / aluminum-induced protein-related		At5g43830 ,RAFL07-10-D18 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI:2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI:451193
	4_720001_750000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-10-K21	At4g01690 / protoporphyrinogen oxidase (PPO) (PPOX)		At4g01690 ,RAFL05-10-K21 protoporphyrinogen oxidase (PPOX) identical to SP|P55826
	5_3990001_4020000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-14-K23	At5g12370 / expressed protein		At5g12370 ,RAFL04-14-K23 exocyst complex component Sec10-related low similarity to SP|O00471 Exocyst complex component Sec10 (hSec10) {Homo sapiens}
	5_20040001_20070000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-16-L10	At5g49970 / expressed protein		At5g49970 ,RAFL05-16-L10 pyridoxamine 5'-phosphate oxidase-related contains weak similarity to Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx). (Swiss-Prot:P28225) [Shigella flexneri]
	1_19260001_19290000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-05-F02	At1g52870 / expressed protein		RAFL05-05-F02 ,At1g52870 peroxisomal membrane protein-related contains weak similarity to Swiss-Prot:Q07066 22 kDa peroxisomal membrane protein [Rattus norvegicus]
	2_11490001_11520000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL04-15-N17	At2g27050 / ethylene-insensitive3-related1 (EIL1)		At2g27050 ,RAFL04-15-N17 ethylene-insensitive3-like1 (EIL1) identical to ethylene-insensitive3-like1 GI:2224927 from [Arabidopsis thaliana]
	5_19800001_19830000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL02-04-I05	At5g49540 / expressed protein		RAFL02-04-I05 ,At5g49540 expressed protein contains Pfam profile PF05646: Protein of unknown function (DUF786)
	5_20250001_20280000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-09-E09	At5g50460 / protein translocation complex Sec61 gamma chain (pir |T05513)		RAFL05-09-E09 ,At5g50460 protein transport protein SEC61 gamma subunit, putative similar to Swiss-Prot:Q19967 protein transport protein SEC61 gamma subunit [Caenorhabditis elegans]
	5_3510001_3540000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-10-N03	At5g11070 / expressed protein		RAFL05-10-N03 ,At5g11070 expressed protein
	3_9210001_9240000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-13-N03	At3g25470 / hemolysin -related		At3g25470 ,RAFL05-13-N03 bacterial hemolysin-related similar to hemolysine GB:AAD36643 from [Thermotoga maritima], contains Pfam profile: PF01479 S4 domain
	4_5610001_5640000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL06-13-L06	At4g10840 / kinesin light chain - related		RAFL06-13-L06 ,At4g10840 kinesin light chain-related low similarity to kinesin light chain [Plectonema boryanum] GI:2645229; contains Pfam profile PF00515 TPR Domain
	1_3600001_3630000				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-13-M08	At1g10840 / translation initiation factor -related		At1g10840 ,RAFL05-13-M08 eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to SP|Q9C5Z2 Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
	5_17100001_17400000				2	133	8	4520	0.032153092	0.19291855	6
		RAFL05-04-D23	At5g43940 / alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase) (GSH-FDH) (ADHIII)		At5g43940 ,RAFL05-04-D23 alcohol dehydrogenase class III / glutathione-dependent formaldehyde dehydrogenase / GSH-FDH (ADHIII) identical to gi:1143388
		RAFL07-10-D18	At5g43830 / aluminum-induced protein-related		At5g43830 ,RAFL07-10-D18 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI:2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI:451193
	4_17400001_17700000				2	133	9	4519	0.03856442	0.30851537	8
		RAFL05-03-P16	At4g40030 / histone H3.2		RAFL05-03-P16 ,At4g40030 histone H3.2 identical to Histone H3.2, minor Lolium temulentum SP|P11105, nearly identical to histone H3.2 Mus pahari GI:515005; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-08-N24	At4g39950 / cytochrome P450 79B2		RAFL05-08-N24 ,At4g39950 cytochrome P450 79B2, putative (CYP79B2) identical to cytochrome P450 (79B2) SP:O81346 from [Arabidopsis thaliana]
	1_28200001_28500000				2	133	10	4518	0.045415256	0.4995678	11
		RAFL09-17-G19	At1g76180 / dehydrin -related		RAFL09-17-G19 ,At1g76180 dehydrin (ERD14) identical to SP|P42763 Dehydrin ERD14 {Arabidopsis thaliana}
		RAFL05-16-M10	At1g76200 / expressed protein		RAFL05-16-M10 ,At1g76200 expressed protein
Cluster:8-2					A	B	C	D	P	P'	N
	5_5070001_5100000				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL05-02-G21	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL05-02-G21 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
		RAFL11-05-M03	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL11-05-M03 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
	5_24150001_24180000				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL05-14-L07	At5g60790 / ABC transporter family protein		At5g60790 ,RAFL05-14-L07 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
		RAFL07-10-I02	At5g60790 / ABC transporter family protein		RAFL07-10-I02 ,At5g60790 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
	2_8970001_9000000				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL04-17-A14	At2g21050 / amino acid permease, putative		At2g21050 ,RAFL04-17-A14 amino acid permease, putative similar to AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam profile PF01490: Transmembrane amino acid transporter protein
		RAFL07-15-P11	At2g21070 / hypothetical protein		RAFL07-15-P11 ,At2g21070 expressed protein
	4_2580001_2610000				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
	4_1_300000				2	60	6	4595	0.0046263156	0.03238421	7
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
	5_4800001_5100000				2	60	8	4593	0.007308847	0.058470774	8
		RAFL05-02-G21	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL05-02-G21 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
		RAFL11-05-M03	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL11-05-M03 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
	4_2400001_2700000				2	60	10	4591	0.010537887	0.10537887	10
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
	2_9300001_9600000				2	60	11	4590	0.012347987	0.14817585	12
		RAFL05-19-N01	At2g22430 / homeobox-leucine zipper protein ATHB-6 (HD-Zip transcription factor Athb-6)		At2g22430 ,RAFL05-19-N01 homeobox-leucine zipper protein 6 (HB-6) / HD-ZIP transcription factor 6 identical to homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (SP:P46668) [Arabidopsis thaliana]
		RAFL06-08-M09	At2g22080 / En/Spm-related transposon protein		RAFL06-08-M09 ,At2g22080 expressed protein
	5_2910001_2940000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-I05	At5g09440 / expressed protein		At5g09440 ,RAFL06-07-I05 phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region
	1_18780001_18810000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-01-G12	At1g51760 / IAA-Ala hydrolase (IAR3)		At1g51760 ,RAFL05-01-G12 IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3) identical to IAA-Ala hydrolase (IAR3) [Arabidopsis thaliana] GI:3421384
	1_4320001_4350000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL09-06-K20	At1g12680 / protein kinase family		RAFL09-06-K20 ,At1g12680 protein kinase family protein contains protein kinase domain, Pfam:PF00069
	4_4560001_4590000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL02-08-C20	At4g08790 / nitrilase 1 like protein		At4g08790 ,RAFL02-08-C20 nitrilase, putative similar to nitrilase 1 [Mus musculus] GI:3228668; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family
	4_15120001_15150000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-19-K24	At4g33666 / expressed protein		At4g33666 ,RAFL05-19-K24 expressed protein
	2_9450001_9480000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-19-N01	At2g22430 / homeobox-leucine zipper protein ATHB-6 (HD-Zip transcription factor Athb-6)		At2g22430 ,RAFL05-19-N01 homeobox-leucine zipper protein 6 (HB-6) / HD-ZIP transcription factor 6 identical to homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (SP:P46668) [Arabidopsis thaliana]
	1_20760001_20790000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-12-J05	At1g56580 / expressed protein		At1g56580 ,RAFL06-12-J05 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538
	1_5850001_5880000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-P24	At1g17160 / pfkB type carbohydrate kinase protein family		RAFL06-07-P24 ,At1g17160 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase
	5_23400001_23430000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL07-12-C13	At5g58620 / zinc finger transcription factor-related protein		At5g58620 ,RAFL07-12-C13 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
	3_17310001_17340000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL08-18-I10	At3g47000 / glycosyl hydrolase family 3		At3g47000 ,RAFL08-18-I10 glycosyl hydrolase family 3 protein beta-D-glucan exohydrolase, Nicotiana tabacum, TREMBL:AB017502_1
	3_3270001_3300000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-18-N12	At3g10500 / expressed protein		At3g10500 ,RAFL05-18-N12 no apical meristem (NAM) family protein similar to to NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam PF02365: No apical meristem (NAM) protein
	2_9330001_9360000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-08-M09	At2g22080 / En/Spm-related transposon protein		RAFL06-08-M09 ,At2g22080 expressed protein
	4_150001_180000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
	4_180001_210000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
	2_13620001_13650000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL09-09-P16	At2g32240 / myosin heavy chain -related		RAFL09-09-P16 ,At2g32240 expressed protein contains Pfam profile: PF04508 viral A-type inclusion protein repeat
	4_16710001_16740000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL07-10-C24	At4g37790 / Homeobox-leucine zipper protein HAT22 (HD-ZIP protein 22)		RAFL07-10-C24 ,At4g37790 homeobox-leucine zipper protein 22 (HAT22) / HD-ZIP protein 22 identical to homeobox-leucine zipper protein HAT22 (HD-ZIP protein 22) (SP:P46604) [Arabidopsis thaliana]
	2_7380001_7410000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-21-C22	At2g17120 / delta-8 sphingolipid desaturase		At2g17120 ,RAFL05-21-C22 peptidoglycan-binding LysM domain-containing protein contains Pfam profile PF01476: LysM domain; supporting cDNA gi|16226688|gb|AF428464.1|AF428464
	2_18810001_18840000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-B05	At2g45820 / remorin		RAFL06-07-B05 ,At2g45820 DNA-binding protein, putative identical to DNA-binding protein gi|601843|gb|AAA57124 [Arabidopsis thaliana]; contains Pfam domain, PF03766: Remorin, N-terminal region; contains Pfam domain, PF03763: Remorin, C-terminal region
	5_25230001_25260000				1	61	0	4601	0.013296161	0.013296161	1
		RAFL05-21-I22	At5g63790 / No apical meristem (NAM) protein family		RAFL05-21-I22 ,At5g63790 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; contains similarity to NAC-domain protein
	2_8700001_9000000				2	60	14	4587	0.018517405	0.20369145	11
		RAFL04-17-A14	At2g21050 / amino acid permease, putative		At2g21050 ,RAFL04-17-A14 amino acid permease, putative similar to AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam profile PF01490: Transmembrane amino acid transporter protein
		RAFL07-15-P11	At2g21070 / hypothetical protein		RAFL07-15-P11 ,At2g21070 expressed protein
	5_24000001_24300000				2	60	15	4586	0.020808658	0.18727791	9
		RAFL05-14-L07	At5g60790 / ABC transporter family protein		At5g60790 ,RAFL05-14-L07 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
		RAFL07-10-I02	At5g60790 / ABC transporter family protein		RAFL07-10-I02 ,At5g60790 ABC transporter family protein similar to ABC transporter homolog PnATH GI:7573600 from [Populus nigra]
	4_1_3000000				4	58	77	4524	0.022002848	0.52806836	24
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
	1_1_300000				2	60	16	4585	0.023211673	0.37138677	16
		RAFL09-06-M22	At1g01620 / plasma membrane intrinsic protein 1c		At1g01620 ,RAFL09-06-M22 plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane protein B (TMPB) identical to plasma membrane intrinsic protein 1c SP:Q08733 from [Arabidopsis thaliana]
		RAFL08-10-E13	At1g01120 / fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1)		At1g01120 ,RAFL08-10-E13 fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1) nearly identical to GB:AAC99312 GI:4091810 from [Arabidopsis thaliana]
	5_5160001_5190000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-19-G24	At5g15850 / Zinc finger protein CONSTANS-LIKE 1 (COL1)		RAFL05-19-G24 ,At5g15850 zinc finger protein CONSTANS-LIKE 1 (COL1) identical to Zinc finger protein CONSTANS-LIKE 1 SP:O50055 from [Arabidopsis thaliana]
	3_20310001_20340000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL07-09-N03	At3g54820 / plasma membrane aquaporin, putative		RAFL07-09-N03 ,At3g54820 aquaporin, putative similar to plasma membrane aquaporin GI:3551133 from [Raphanus sativus]
	1_210001_240000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL09-06-M22	At1g01620 / plasma membrane intrinsic protein 1c		At1g01620 ,RAFL09-06-M22 plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane protein B (TMPB) identical to plasma membrane intrinsic protein 1c SP:Q08733 from [Arabidopsis thaliana]
	1_29880001_29910000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL06-11-H07	At1g80460 / glycerol kinase -related		At1g80460 ,RAFL06-11-H07 glycerol kinase, putative similar to glycerol kinase (ATP:glycerol 3-phosphotransferase, Glycerokinase, GK)[Mycobacterium tuberculosis] Swiss-Prot:O69664
	1_25950001_25980000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-16-B15	At1g69870 / peptide transporter -related		At1g69870 ,RAFL05-16-B15 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family
	2_19500001_19530000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-05-E05	At2g47730 / glutathione transferase, putative (GST6)		RAFL05-05-E05 ,At2g47730 glutathione S-transferase 6 (GST6) identical to GB:X95295. Based on identical cDNA hits, the translation is now 40 AAs longer at the N-terminal, and start of exon2 is also corrected.
	5_23700001_23730000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL06-16-O23	At5g59550 / expressed protein		RAFL06-16-O23 ,At5g59550 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
	1_26280001_26310000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL05-18-E01	At1g70700 / expressed protein		RAFL05-18-E01 ,At1g70700 expressed protein
	5_1980001_2010000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL04-20-O21	At5g06530 / ABC transporter family protein		At5g06530 ,RAFL04-20-O21 ABC transporter family protein
	3_19800001_19830000				1	61	1	4600	0.026418349	0.052836698	2
		RAFL03-09-N15	At3g53420 / plasma membrane intrinsic protein 2A		RAFL03-09-N15 ,At3g53420 plasma membrane intrinsic protein 2A (PIP2A) / aquaporin PIP2.1 (PIP2.1) identical to plasma membrane intrinsic protein 2A SP: P43286 from [Arabidopsis thaliana]
	1_9540001_9570000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-14-H17	At1g27540 / F-box protein family		At1g27540 ,RAFL05-14-H17 F-box family protein similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]; confirmed by FLcDNA GI:16604421; contains uncharacterized Arabidoppsis domain shared by 33 Arabidopsis proteins
	3_18240001_18270000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-12-F11	At3g49220 / pectinesterase family		At3g49220 ,RAFL07-12-F11 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
	4_15660001_15690000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-05-A20	At4g35110 / expressed protein		At4g35110 ,RAFL05-05-A20 expressed protein
	2_17640001_17670000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-20-N18	At2g42530 / cold-regulated protein (cor15b)		At2g42530 ,RAFL05-20-N18 cold-responsive protein / cold-regulated protein (cor15b) nearly identical to cold-regulated gene cor15b [Arabidopsis thaliana] GI:456016; contains Pfam profile PF02987: Late embryogenesis abundant protein
	5_18870001_18900000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL05-14-I17	At5g47240 / MutT/nudix family protein		RAFL05-14-I17 ,At5g47240 MutT/nudix family protein similar to SP|P53370 Nucleoside diphosphate-linked moiety X motif 6 {Homo sapiens}; contains Pfam profile PF00293: NUDIX domain
	3_22740001_22770000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL06-12-E09	At3g61430 / plasma membrane intrinsic protein 1A		At3g61430 ,RAFL06-12-E09 plasma membrane intrinsic protein 1A (PIP1A) / aquaporin PIP1.1 (PIP1.1) (AQ1) identical to plasma membrane intrinsic protein 1A SP:P43285 from [Arabidopsis thaliana]
	3_570001_600000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-13-P15	At3g02750 / protein phosphatase 2C (PP2C)		RAFL07-13-P15 ,At3g02750 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2C; PP2C (GI:3643088) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain;
	1_9720001_9750000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL04-15-P04	At1g27950 / lipid transfer protein - related		At1g27950 ,RAFL04-15-P04 lipid transfer protein-related low similarity to lipid transfer protein Picea abies GI:2627141; contains Pfam profile: PF00234: Protease inhibitor/seed storage/LTP family
	5_7080001_7110000				1	61	2	4599	0.0393688	0.1181064	3
		RAFL09-15-K03	At5g20900 / expressed protein		At5g20900 ,RAFL09-15-K03 expressed protein
Cluster:0-1					A	B	C	D	P	P'	N
	2_9060001_9090000				6	100	2	4555	3.2338237E-9	9.701471E-9	3
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
	3_4050001_4080000				4	102	1	4556	1.2403926E-6	2.4807853E-6	2
		RAFL07-16-P05	At3g12780 / phosphoglycerate kinase -related		RAFL07-16-P05 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-15-L04	At3g12780 / phosphoglycerate kinase -related		RAFL09-15-L04 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-14-L16	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL07-14-L16 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-18-L22	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL09-18-L22 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
	2_9000001_9300000				6	100	15	4542	4.9245464E-6	6.40191E-5	13
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
	2_2760001_2790000				3	103	0	4557	1.1423829E-5	1.1423829E-5	1
		RAFL11-02-K17	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL11-02-K17 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL08-17-A06	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL08-17-A06 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL07-10-G09	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL07-10-G09 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
	1_24690001_24720000				4	102	5	4552	2.9127843E-5	8.738353E-5	3
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	1_18900001_19200000				4	102	7	4550	7.364662E-5	5.155263E-4	7
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	2_2700001_3000000				3	103	3	4554	2.1731186E-4	8.692474E-4	4
		RAFL11-02-K17	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL11-02-K17 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL08-17-A06	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL08-17-A06 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
		RAFL07-10-G09	At2g06850 / xyloglucan endotransglycosylase (ext/EXGT-A1)		RAFL07-10-G09 ,At2g06850 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI:469484 and endoxyloglucan transferase (EXGT-A1) GI:5533309 from [Arabidopsis thaliana]
	4_8190001_8220000				3	103	3	4554	2.1731186E-4	8.692474E-4	4
		RAFL09-09-G02	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-09-G02 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-18-F20	At4g16370 / isp4 like protein		At4g16370 ,RAFL04-18-F20 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL09-16-G24	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-16-G24 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	1_24600001_24900000				4	102	12	4545	3.719998E-4	0.0026039986	7
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
	1_16380001_16410000				2	104	0	4557	5.119853E-4	5.119853E-4	1
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	3_3900001_4200000				4	102	15	4542	7.516408E-4	0.0075164083	10
		RAFL07-16-P05	At3g12780 / phosphoglycerate kinase -related		RAFL07-16-P05 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-15-L04	At3g12780 / phosphoglycerate kinase -related		RAFL09-15-L04 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-14-L16	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL07-14-L16 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-18-L22	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL09-18-L22 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
	1_11520001_11550000				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
	3_5490001_5520000				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-20-D12	At3g16250 / ferredoxin - related		RAFL04-20-D12 ,At3g16250 ferredoxin-related contains Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding domains
		RAFL06-09-P22	At3g16240 / delta tonoplast integral protein (delta-TIP)		At3g16240 ,RAFL06-09-P22 delta tonoplast integral protein (delta-TIP) identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis thaliana] (Plant Cell 8 (4), 587-599 (1996))
	3_6180001_6210000				2	104	1	4556	0.0015131081	0.0030262163	2
		RAFL04-16-L04	At3g18050 / expressed protein		At3g18050 ,RAFL04-16-L04 expressed protein
		RAFL09-15-K15	At3g18080 / glycosyl hydrolase family 1		At3g18080 ,RAFL09-15-K15 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase BGQ60 precursor GB:A57512 [Hordeum vulgare]; similar to beta-mannosidase enzyme (GI:17226270) [Lycopersicon esculentum]
	1_18000001_21000000				9	97	115	4442	0.0018587124	0.05576137	30
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-07-I23	At1g56190 / phosphoglycerate kinase -related		RAFL07-07-I23 ,At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	3_10200001_10500000				3	103	10	4547	0.002766296	0.024896665	9
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
	3_10290001_10320000				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
	1_27960001_27990000				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
	1_19080001_19110000				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
	1_15630001_15660000				2	104	2	4555	0.0029812786	0.008943836	3
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	5_3630001_3660000				2	104	3	4554	0.004895142	0.019580567	4
		RAFL07-10-E04	At5g11420 / expressed protein		RAFL07-10-E04 ,At5g11420 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
		RAFL07-11-I06	At5g11420 / expressed protein		RAFL07-11-I06 ,At5g11420 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642
	1_16200001_16500000				2	104	3	4554	0.004895142	0.019580567	4
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	4_8100001_8400000				3	103	13	4544	0.0051543964	0.04638957	9
		RAFL09-09-G02	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-09-G02 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-18-F20	At4g16370 / isp4 like protein		At4g16370 ,RAFL04-18-F20 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL09-16-G24	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-16-G24 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	2_9000001_12000000				7	99	95	4462	0.008086153	0.23449846	29
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-E12 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL09-17-N23 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		At2g21330 ,RAFL08-18-C10 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL06-16-D08	At2g25510 / expressed protein		RAFL06-16-D08 ,At2g25510 expressed protein
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-J01 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-18-C20 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		RAFL07-12-M09 ,At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057 [SP|Q40677]
	1_15600001_15900000				2	104	6	4551	0.013107923	0.09175546	7
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	1_11400001_11700000				2	104	7	4550	0.016604977	0.09962986	6
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
	1_18450001_18480000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
	3_20910001_20940000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-10-F17	At3g56400 / WRKY family transcription factor		RAFL04-10-F17 ,At3g56400 WRKY family transcription factor DNA-binding protein 4 WRKY4 - Nicotiana tabacum, EMBL:AF193771
	1_27090001_27120000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-12-A07	At1g72930 / disease resistance protein (TIR class), putative		RAFL06-12-A07 ,At1g72930 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein.
	1_11310001_11340000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-08-C03	At1g31580 / ORF1		At1g31580 ,RAFL06-08-C03 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905
	5_25680001_25710000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-11-L03	At5g65010 / asparagine synthetase (gb|AAC72837.1)		At5g65010 ,RAFL09-11-L03 asparagine synthetase 2 (ASN2) identical to asparagine synthetase (ASN2) [Arabidopsis thaliana] GI:3859536
	4_6930001_6960000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-09-H22	At4g13770 / cytochrome P450 family		At4g13770 ,RAFL04-09-H22 cytochrome P450 family protein
	3_22980001_23010000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-14-G23	At3g62030 / peptidylprolyl isomerase ROC4		At3g62030 ,RAFL07-14-G23 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) identical to peptidyl-prolyl cis-trans isomerase, chloroplast precursor, PPIase (cyclophilin, cyclosporin A-binding protein) [Arabidopsis thaliana] SWISS-PROT:P34791; identical to cDNA nuclear-encoded chloroplast stromal cyclophilin (ROC4) GI:405130
	4_14520001_14550000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-17-B14	At4g32260 / H+-transporting ATP synthase chain 9 - like protein		At4g32260 ,RAFL04-17-B14 ATP synthase family contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140
	4_10290001_10320000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-17-G17	At4g21280 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL05-17-G17 ,At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) identical to SP|Q9XFT3 Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
	4_5040001_5070000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-K18	At4g09650 / H+-transporting ATP synthase-related protein		At4g09650 ,RAFL06-07-K18 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to SP|P32980 ATP synthase delta chain, chloroplast precursor (EC 3.6.3.14) {Nicotiana tabacum}; contains Pfam profile PF00213: ATP synthase F1, delta subunit
	2_18690001_18720000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-15-M08	At2g45470 / fasciclin-like arabinogalactan-protein (FLA8)		At2g45470 ,RAFL06-15-M08 fasciclin-like arabinogalactan-protein (FLA8)
	2_16500001_16530000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-14-B16	At2g39730 / auxin-regulated protein		At2g39730 ,RAFL05-14-B16 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana]
	2_2400001_2700000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-19-N12	At2g06520 / expressed protein		At2g06520 ,RAFL05-19-N12 membrane protein, putative contains 2 transmembrane domains;
	1_19320001_19350000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
	5_7470001_7500000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-09-L14	At5g22580 / expressed protein		RAFL04-09-L14 ,At5g22580 expressed protein
	1_18900001_18930000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	4_16320001_16350000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL07-16-J11	At4g36870 / BEL1-like homeobox 2 protein (BLH2)		RAFL07-16-J11 ,At4g36870 BEL1-like homeobox 2 protein (BLH2)
	3_16530001_16560000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-06-O22	At3g45140 / lipoxygenase (LOX2)		RAFL09-06-O22 ,At3g45140 lipoxygenase (LOX2) identical to SP|P38418
	4_16200001_16230000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
	3_4770001_4800000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL09-12-M04	At3g14310 / pectin methylesterase -related		At3g14310 ,RAFL09-12-M04 pectinesterase family protein contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor ;similar to pectin methylesterase GB:Q42534 from [Arabidopsis thaliana]
	2_15720001_15750000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-16-P06	At2g37660 / expressed protein		At2g37660 ,RAFL04-16-P06 expressed protein
	2_2580001_2610000				1	105	0	4557	0.022732146	0.022732146	1
		RAFL05-19-N12	At2g06520 / expressed protein		At2g06520 ,RAFL05-19-N12 membrane protein, putative contains 2 transmembrane domains;
	1_20100001_20400000				2	104	9	4548	0.024629358	0.19703487	8
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
	3_9000001_12000000				5	101	74	4483	0.03297345	0.75838935	23
		RAFL05-21-D22	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL05-21-D22 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL11-10-L16	At3g27830 / 50S ribosomal protein L12-1, chloroplast precursor (CL12-A)		At3g27830 ,RAFL11-10-L16 50S ribosomal protein L12-1, chloroplast (CL12-A) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
		RAFL09-14-L24	At3g28220 / expressed protein		At3g28220 ,RAFL09-14-L24 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain
		RAFL08-09-L12	At3g26060 / peroxiredoxin -related		RAFL08-09-L12 ,At3g26060 peroxiredoxin Q, putative similar to peroxiredoxin Q [Sedum lineare] GI:6899842; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
	Chromosome:1				35	71	1084	3473	0.037540954	1.2388514	33
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL06-08-C03	At1g31580 / ORF1		At1g31580 ,RAFL06-08-C03 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905
		RAFL05-16-P12	At1g67740 / F12A21.13		RAFL05-16-P12 ,At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY) / L-arginine metabolising enzyme identical to SP:O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana]
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-04-M03	At1g32470 / glycine cleavage system H protein precursor -related		At1g32470 ,RAFL05-04-M03 glycine cleavage system H protein, mitochondrial, putative similar to SP|P25855 Glycine cleavage system H protein 1, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF01597: Glycine cleavage H-protein
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
		RAFL11-02-L02	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL11-02-L02 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-04-H06	At1g32080 / expressed protein		RAFL05-04-H06 ,At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI:405873) [Escherichia coli]
		RAFL06-12-A07	At1g72930 / disease resistance protein (TIR class), putative		RAFL06-12-A07 ,At1g72930 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein.
		RAFL08-08-D01	At1g29660 / GDSL-motif lipase/hydrolase protein		RAFL08-08-D01 ,At1g29660 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL1 [Arabidopsis thaliana] GI:15054382; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL09-06-P15	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		At1g67090 ,RAFL09-06-P15 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL06-10-O24	At1g15820 / chlorophyll a/b-binding protein Lhcb6		At1g15820 ,RAFL06-10-O24 chlorophyll A-B binding protein, chloroplast (LHCB6) nearly identical to Lhcb6 protein [Arabidopsis thaliana] GI:4741960; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL03-06-F08	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL03-06-F08 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL07-08-C08	At1g64770 / expressed protein		RAFL07-08-C08 ,At1g64770 expressed protein
		RAFL02-04-K03	At1g20340 / plastocyanin		At1g20340 ,RAFL02-04-K03 plastocyanin similar to plastocyanin GI:1865683 from [Arabidopsis thaliana]
		RAFL02-06-A08	At1g06680 / photosystem II oxygen-evolving complex 23 (OEC23)		At1g06680 ,RAFL02-06-A08 photosystem II oxygen-evolving complex 23 (OEC23) JBC 14:211-238 (2002); identical to 23 kDa polypeptide of oxygen-evolving comlex (OEC) GB:CAA66785 GI:1769905 [Arabidopsis thaliana]
		RAFL06-13-H16	At1g11860 / aminomethyltransferase-related precursor protein		At1g11860 ,RAFL06-13-H16 aminomethyltransferase, putative similar to aminomethyltransferase, mitochondrial precursor SP:O49849 from [Flaveria anomala]
		RAFL04-15-A14	At1g12900 / calcium-binding protein, calreticulin -related		At1g12900 ,RAFL04-15-A14 glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative similar to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain
		RAFL04-13-J22	At1g09750 / expressed protein		At1g09750 ,RAFL04-13-J22 chloroplast nucleoid DNA-binding protein-related contains Pfam profile PF00026: Eukaryotic aspartyl protease;b similar to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) [Nicotiana tabacum]
		RAFL09-06-K21	At1g67090 / ribulose-bisphosphate carboxylase small unit -related		RAFL09-06-K21 ,At1g67090 ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}
		RAFL07-07-I23	At1g56190 / phosphoglycerate kinase -related		RAFL07-07-I23 ,At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
		RAFL09-16-K05	At1g09340 / RNA-binding protein -related		RAFL09-16-K05 ,At1g09340 expressed protein
		RAFL05-08-B17	At1g16410 / cytochrome P450, putative		At1g16410 ,RAFL05-08-B17 cytochrome P450, putative similar to gb|AF069494 cytochrome P450 from Sinapis alba and is a member of the PF|00067 Cytochrome P450 family
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	1_27900001_28200000				2	104	12	4545	0.038989853	0.38989854	10
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
	1_15000001_18000000				4	102	53	4504	0.03970353	0.9528847	24
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-07-J06	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL05-07-J06 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
		RAFL04-09-D24	At1g42970 / glyceraldehyde-3-phosphate dehydrogenase		At1g42970 ,RAFL04-09-D24 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana}
	4_16200001_16500000				2	104	13	4544	0.04433326	0.39899936	9
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
		RAFL07-16-J11	At4g36870 / BEL1-like homeobox 2 protein (BLH2)		RAFL07-16-J11 ,At4g36870 BEL1-like homeobox 2 protein (BLH2)
	2_19170001_19200000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-08-I11	At2g46820 / expressed protein		At2g46820 ,RAFL06-08-I11 expressed protein
	4_16770001_16800000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-04-O06	At4g37930 / glycine hydroxymethyltransferase like protein		At4g37930 ,RAFL05-04-O06 glycine hydroxymethyltransferase / serine hydroxymethyltransferase / serine/threonine aldolase (SHM1) identical to serine hydroxymethyl transferase [Arabidopsis thaliana] GI:6899945
	3_19890001_19920000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-B16	At3g53710 / ARF GAP-like zinc finger-containing protein (ZIGA2)		At3g53710 ,RAFL07-08-B16 ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like zinc finger-containing protein ZIGA2 from GI:10441356 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP)
	5_4560001_4590000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-15-H14	At5g14200 / 3-isopropylmalate dehydrogenase, chloroplast, putative		At5g14200 ,RAFL05-15-H14 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to SP|P29102 3-isopropylmalate dehydrogenase, chloroplast precursor {Brassica napus}
	1_25020001_25050000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-16-P12	At1g67740 / F12A21.13		RAFL05-16-P12 ,At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY) / L-arginine metabolising enzyme identical to SP:O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana]
	3_20010001_20040000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-13-J02	At3g54050 / fructose-bisphosphatase precursor		At3g54050 ,RAFL04-13-J02 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative strong similarity to fructose-1,6-bisphosphatase [Brassica napus] GI:289367; identical to SP|P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
	5_19890001_19920000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-12-M04	At5g49730 / ferric reductase-like transmembrane component family		At5g49730 ,RAFL04-12-M04 ferric reductase-like transmembrane component family protein similar to ferric-chelate reductase (FRO1) [Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane componenent
	1_20370001_20400000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
	3_17340001_17370000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-15-K17	At3g47070 / expressed protein		At3g47070 ,RAFL04-15-K17 expressed protein
	4_9930001_9960000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-16-G16	At4g20360 / elongation factor Tu (EF-Tu)		At4g20360 ,RAFL06-16-G16 elongation factor Tu / EF-Tu (TUFA) identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
	1_19020001_19050000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
	2_10800001_10830000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-16-D08	At2g25510 / expressed protein		RAFL06-16-D08 ,At2g25510 expressed protein
	2_15900001_15930000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-15-H02	At2g38120 / amino acid permease, putative (AUX1)		At2g38120 ,RAFL07-15-H02 amino acid permease, putative (AUX1) identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
	3_10320001_10350000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-01-B21	At3g27850 / 50S ribosomal protein L12-3, chloroplast precursor (CL12-C)		RAFL05-01-B21 ,At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB:X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994))
	1_23700001_23730000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-C08	At1g64770 / expressed protein		RAFL07-08-C08 ,At1g64770 expressed protein
	5_7710001_7740000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-21-P23	At5g23060 / expressed protein		RAFL05-21-P23 ,At5g23060 expressed protein
	5_16110001_16140000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL07-08-E08	At5g40950 / 50S ribosomal protein L27, chloroplast precursor (CL27)		At5g40950 ,RAFL07-08-E08 50S ribosomal protein L27, chloroplast, putative (RPL27) identical to SP|Q9FLN4 ribosomal protein L27, chloroplast precursor {Arabidopsis thaliana}; similar to SP|P30155 50S ribosomal protein L27, chloroplast precursor (CL27) {Nicotiana tabacum}
	1_5430001_5460000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL06-10-O24	At1g15820 / chlorophyll a/b-binding protein Lhcb6		At1g15820 ,RAFL06-10-O24 chlorophyll A-B binding protein, chloroplast (LHCB6) nearly identical to Lhcb6 protein [Arabidopsis thaliana] GI:4741960; contains Pfam profile PF00504: Chlorophyll A-B binding protein
	1_7020001_7050000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL02-04-K03	At1g20340 / plastocyanin		At1g20340 ,RAFL02-04-K03 plastocyanin similar to plastocyanin GI:1865683 from [Arabidopsis thaliana]
	3_20700001_20730000				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-12-O19	At3g55800 / sedoheptulose-bisphosphatase precursor		At3g55800 ,RAFL05-12-O19 sedoheptulose-1,7-bisphosphatase, chloroplast / sedoheptulose-bisphosphatase identical to SP|P46283 Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana}
Cluster:9-2					A	B	C	D	P	P'	N
	1_6600001_6630000				3	64	1	4595	1.1229972E-5	2.2459944E-5	2
		RAFL09-09-P15	At1g19180 / expressed protein		RAFL09-09-P15 ,At1g19180 expressed protein
		RAFL06-10-F03	At1g19180 / expressed protein		RAFL06-10-F03 ,At1g19180 expressed protein
		RAFL05-02-L02	At1g19180 / expressed protein		RAFL05-02-L02 ,At1g19180 expressed protein
	1_22500001_22530000				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL05-05-K10	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL05-05-K10 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL08-09-F22	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL08-09-F22 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
	3_19710001_19740000				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL08-17-D17	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL08-17-D17 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
		RAFL06-09-F14	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL06-09-F14 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
	1_240001_270000				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL05-19-I05	At1g01720 / No apical meristem (NAM) protein family		RAFL05-19-I05 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
		RAFL07-07-G15	At1g01720 / No apical meristem (NAM) protein family		RAFL07-07-G15 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
	1_6600001_6900000				3	64	6	4590	2.2394971E-4	0.001567648	7
		RAFL09-09-P15	At1g19180 / expressed protein		RAFL09-09-P15 ,At1g19180 expressed protein
		RAFL06-10-F03	At1g19180 / expressed protein		RAFL06-10-F03 ,At1g19180 expressed protein
		RAFL05-02-L02	At1g19180 / expressed protein		RAFL05-02-L02 ,At1g19180 expressed protein
	3_16890001_16920000				2	65	2	4594	0.0011979077	0.0035937233	3
		RAFL04-09-M06	At3g45970 / expansin protein family (EXPL1)		RAFL04-09-M06 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL06-12-F13	At3g45970 / expansin protein family (EXPL1)		RAFL06-12-F13 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
	4_12000001_12300000				3	64	17	4579	0.0027139732	0.03528165	13
		RAFL09-14-O03	At4g26080 / protein phosphatase ABI1		At4g26080 ,RAFL09-14-O03 protein phosphatase 2C ABI1 / PP2C ABI1 / abscisic acid-insensitive 1 (ABI1) nearly identical to SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 1) {Arabidopsis thaliana}
		RAFL05-03-K03	At4g25670 / expressed protein		RAFL05-03-K03 ,At4g25670 expressed protein
		RAFL09-11-P17	At4g25690 / expressed protein		At4g25690 ,RAFL09-11-P17 expressed protein
	4_15510001_15540000				2	65	5	4591	0.004077173	0.024463037	6
		RAFL08-11-N01	At4g34710 / arginine decarboxylase SPE2		At4g34710 ,RAFL08-11-N01 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
		RAFL09-13-D07	At4g34710 / arginine decarboxylase SPE2		RAFL09-13-D07 ,At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
	4_12030001_12060000				2	65	6	4590	0.0053859474	0.032315683	6
		RAFL05-03-K03	At4g25670 / expressed protein		RAFL05-03-K03 ,At4g25670 expressed protein
		RAFL09-11-P17	At4g25690 / expressed protein		At4g25690 ,RAFL09-11-P17 expressed protein
	3_16800001_17100000				2	65	9	4587	0.010289272	0.061735634	6
		RAFL04-09-M06	At3g45970 / expansin protein family (EXPL1)		RAFL04-09-M06 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
		RAFL06-12-F13	At3g45970 / expansin protein family (EXPL1)		RAFL06-12-F13 ,At3g45970 expansin family protein (EXPL1) similar to cim1 induced allergen, Glycine max, EMBL:U03860; expansin-like gene, PMID:11641069, www.bio.psu.edu/expansins
	5_1800001_2100000				2	65	10	4586	0.012233394	0.11010055	9
		RAFL08-13-M13	At5g06530 / ABC transporter family protein		RAFL08-13-M13 ,At5g06530 ABC transporter family protein
		RAFL05-09-M02	At5g06320 / harpin-induced protein 1 family (NDR1/HIN1-like protein 3)		RAFL05-09-M02 ,At5g06320 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein / NDR1/HIN1-like protein 3 similar to harpin-induced protein hin1 (GI:1619321)[Nicotiana tabacum]
	1_22500001_22800000				2	65	10	4586	0.012233394	0.07340036	6
		RAFL05-05-K10	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL05-05-K10 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL08-09-F22	At1g61890 / MATE efflux protein family		At1g61890 ,RAFL08-09-F22 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
	4_13740001_13770000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL09-13-I05	At4g30210 / NADPH-ferrihemoprotein reductase (NADPH-cytochrome p450 reductase), putative		At4g30210 ,RAFL09-13-I05 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-cytochrome P450 oxydoreductase from [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183564, GI:13183566
	5_1350001_1380000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-16-C02	At5g04760 / myb family transcription factor		RAFL08-16-C02 ,At5g04760 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
	2_9780001_9810000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-10-D13	At2g23120 / expressed protein		RAFL04-10-D13 ,At2g23120 expressed protein
	1_10320001_10350000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-10-G18	At1g29500 / auxin-induced (indole-3-acetic acid induced) protein, putative		At1g29500 ,RAFL08-10-G18 auxin-responsive protein, putative similar to auxin-induced protein 6B (SP:P33083) [Glycine max]
	1_20790001_20820000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL08-08-L20	At1g56600 / galactinol synthase, putative		At1g56600 ,RAFL08-08-L20 galactinol synthase, putative similar to galactinol synthase, isoform GolS-1 GI:5608497 from [Ajuga reptans]
	4_9060001_9090000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-01-H22	At4g18280 / glycine-rich cell wall protein-related		At4g18280 ,RAFL05-01-H22 glycine-rich cell wall protein-related glycine-rich protein 1.0 precursor, Phaseolus vulgaris, PIR1:S01821
	4_13800001_13830000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-17-H01	At4g30350 / expressed protein		RAFL04-17-H01 ,At4g30350 heat shock protein-related contains similarity to heat shock protein 101 [Triticum aestivum] gi|6013196|gb|AAF01280
	1_27240001_27270000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL04-17-M22	At1g73390 / expressed protein		At1g73390 ,RAFL04-17-M22 expressed protein
	3_21930001_21960000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-14-A21	At3g59350 / serine/threonine protein kinase, putative		RAFL05-14-A21 ,At3g59350 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805
	2_15810001_15840000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-13-D04	At2g37970 / expressed protein		At2g37970 ,RAFL05-13-D04 SOUL heme-binding family protein weak similarity to SOUL protein [Mus musculus] GI:4886906; contains Pfam profile PF04832: SOUL heme-binding protein
	2_12840001_12870000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-19-E19	At2g30250 / WRKY family transcription factor		RAFL05-19-E19 ,At2g30250 WRKY family transcription factor
	1_15660001_15690000				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-18-N16	At1g42990 / bZIP family transcription factor		At1g42990 ,RAFL05-18-N16 bZIP transcription factor family protein contains Pfam profile: PF00170: bZIP transcription factor
	5_16500001_16800000				2	65	15	4581	0.024071941	0.31293523	13
		RAFL07-12-N12	At5g42570 / expressed protein		At5g42570 ,RAFL07-12-N12 expressed protein low similarity to SP|P51572 B-cell receptor-associated protein 31 (6C6-AG tumor-associated antigen) (DXS1357E) {Homo sapiens}
		RAFL06-07-D06	At5g42050 / expressed protein		RAFL06-07-D06 ,At5g42050 expressed protein similar to gda-1 [Pisum sativum] GI:2765418
	1_1_300000				2	65	16	4580	0.026833067	0.42932907	16
		RAFL05-19-I05	At1g01720 / No apical meristem (NAM) protein family		RAFL05-19-I05 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
		RAFL07-07-G15	At1g01720 / No apical meristem (NAM) protein family		RAFL07-07-G15 ,At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB:AAD17313 GI:4325282 from [Arabidopsis thaliana]
	4_8610001_8640000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL07-11-B03	At4g17230 / scarecrow-like transcription factor 13 (SCL13)		RAFL07-11-B03 ,At4g17230 scarecrow-like transcription factor 13 (SCL13)
	1_25950001_25980000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL02-03-F05	At1g69890 / expressed protein		RAFL02-03-F05 ,At1g69890 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569
	2_450001_480000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL09-06-M16	At2g01980 / sodium proton exchanger, putative (NHX7/SOS1)		At2g01980 ,RAFL09-06-M16 sodium proton exchanger, putative (NHX7) (SOS1) identical to putative Na+/H+ antiporter SOS1 [Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563
	5_23010001_23040000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL09-13-M13	At5g57560 / xyloglucan endotransglycosylase (TCH4)		RAFL09-13-M13 ,At5g57560 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (TCH4) identical to xyloglucan endotransglycosylase TCH4 protein GI:886116
	5_7830001_7860000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-09-I02	At5g23340 / expressed protein		At5g23340 ,RAFL05-09-I02 expressed protein
	5_1980001_2010000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL08-13-M13	At5g06530 / ABC transporter family protein		RAFL08-13-M13 ,At5g06530 ABC transporter family protein
	5_22020001_22050000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-04-E02	At5g54940 / translation initiation factor-related protein		At5g54940 ,RAFL05-04-E02 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1
	5_1650001_1680000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-03-O21	At5g05600 / oxidoreductase, 2OG-Fe(II) oxygenase family		RAFL05-03-O21 ,At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Citrus unshiu][gi:4126403], leucoanthocyanidin dioxygenase [Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain
	4_10410001_10440000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-14-D05	At4g21570 / expressed protein		At4g21570 ,RAFL05-14-D05 expressed protein contains Pfam profile PF03619: Domain of unknown function
	5_24300001_24330000				1	66	1	4595	0.028533451	0.057066903	2
		RAFL02-07-L08	At5g61160 / transferase family		At5g61160 ,RAFL02-07-L08 transferase family protein similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234; contains Pfam profile PF02458 transferase family
	4_15300001_15600000				2	65	21	4575	0.04238358	0.7205209	17
		RAFL08-11-N01	At4g34710 / arginine decarboxylase SPE2		At4g34710 ,RAFL08-11-N01 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
		RAFL09-13-D07	At4g34710 / arginine decarboxylase SPE2		RAFL09-13-D07 ,At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
	3_3570001_3600000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL09-06-P14	At3g11420 / fringe-related protein		RAFL09-06-P14 ,At3g11420 fringe-related protein similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling.
	1_17940001_17970000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL03-10-E10	At1g49590 / expressed protein		RAFL03-10-E10 ,At1g49590 formin-binding protein-related similar to formin binding protein 21 (GI:3550080) [Homo sapiens]; similar to formin binding protein 21 (GI:3550077) [Mus musculus]; similar to Dinap1-interacting protein 1 (GI:8745458) [Crypthecodinium cohnii]
	2_9510001_9540000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-09-N09	At2g22500 / mitochondrial carrier protein family		At2g22500 ,RAFL05-09-N09 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein
	3_20550001_20580000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-20-E01	At3g55430 / glycosyl hydrolase family 17 (beta-1,3-glucanase)		At3g55430 ,RAFL05-20-E01 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative similar to beta-1,3 glucanase GI:7414433 from [Pisum sativum]; contains Pfam profile PF00332: Glycosyl hydrolases family 17
	3_23040001_23070000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL06-13-K18	At3g62260 / protein phosphatase 2C (PP2C), putative		RAFL06-13-K18 ,At3g62260 protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR:S22423
	3_3180001_3210000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL07-13-C20	At3g10300 / calcium-binding EF-hand family protein		At3g10300 ,RAFL07-13-C20 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
	1_30030001_30060000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-18-H12	At1g80840 / WRKY family transcription factor		RAFL05-18-H12 ,At1g80840 WRKY family transcription factor similar to WRKY transcription factor GB:BAA87058 GI:6472585 from [Nicotiana tabacum]
	1_18510001_18540000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL04-12-F24	At1g51090 / heavy-metal-associated domain-containing protein		At1g51090 ,RAFL04-12-F24 heavy-metal-associated domain-containing protein contains Pfam profile PF00403: Heavy-metal-associated domain
	3_19860001_19890000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-08-F01	At3g53570 / protein kinase (AME2/AFC1)		At3g53570 ,RAFL05-08-F01 protein kinase (AFC1) (AME2) identical to protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
	5_26070001_26100000				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-07-D07	At5g65930 / kinesin-like calmodulin-binding protein		At5g65930 ,RAFL05-07-D07 kinesin-like calmodulin-binding protein (ZWICHEL) identical to kinesin-like protein GI:2224925 from [Arabidopsis thaliana]
Cluster:3-1					A	B	C	D	P	P'	N
	3_6900001_7200000				5	211	9	4438	2.892519E-4	0.002603267	9
		RAFL05-14-P22	At3g20320 / expressed protein		At3g20320 ,RAFL05-14-P22 mce-related family protein contains Pfam PF02470: mce related protein
		RAFL04-09-P17	At3g19960 / myosin		RAFL04-09-P17 ,At3g19960 myosin (ATM) nearly identical to myosin [Arabidopsis thaliana] GI:6491702; similar to myosin GI:6491702 from [Arabidopsis thaliana] ;contains Pfam profiles: PF00063: myosin head (motor domain), PF00612: IQ calmodulin-binding motif; identical to cDNA myosin (ATM) GI:297068
		RAFL07-11-N11	At3g19930 / sugar transport protein STP4		RAFL07-11-N11 ,At3g19930 sugar transport protein (STP4) identical to GB:S25009 GI:16524 from [Arabidopsis thaliana]
		RAFL08-12-L05	At3g20000 / membrane import protein -related		RAFL08-12-L05 ,At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin
		RAFL07-16-F16	At3g20330 / aspartate carbamoyltransferase precursor (aspartate transcarbamylase)		RAFL07-16-F16 ,At3g20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana}
	5_19260001_19290000				3	213	1	4446	3.7887847E-4	7.5775693E-4	2
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
	5_2700001_2730000				2	214	0	4447	0.0021362621	0.0021362621	1
		RAFL04-13-O20	At5g08420 / rev interacting protein mis3 - like		At5g08420 ,RAFL04-13-O20 expressed protein
		RAFL04-20-G24	At5g08400 / expressed protein		RAFL04-20-G24 ,At5g08400 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp.
	5_18660001_18690000				2	214	0	4447	0.0021362621	0.0021362621	1
		RAFL06-11-E12	At5g46710 / expressed protein		RAFL06-11-E12 ,At5g46710 zinc-binding family protein similar zinc-binding protein [Pisum sativum] GI:16117799; contains Pfam profile PF04640 : Protein of unknown function, DUF597
		RAFL05-09-J08	At5g46700 / senescence-associated protein, putative		At5g46700 ,RAFL05-09-J08 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855
	3_1200001_1500000				5	211	17	4430	0.0028076097	0.039306536	14
		RAFL04-15-F24	At3g04890 / expressed protein		RAFL04-15-F24 ,At3g04890 expressed protein
		RAFL05-19-G22	At3g05180 / GDSL-motif lipase/hydrolase protein		RAFL05-19-G22 ,At3g05180 GDSL-motif lipase/hydrolase family protein similar to early nodulin ENOD8 [Medicago sativa] GI:304037, elicitor-induced glycoprotein iEP4 [Daucus carota] GI:1911765, lanatoside 15'-O-acetylesterase [Digitalis lanata] GI:3688284; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family
		RAFL07-18-H24	At3g04910 / protein kinase family		At3g04910 ,RAFL07-18-H24 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL04-09-I16	At3g04770 / 40S ribosomal protein SA (RPSaB)		RAFL04-09-I16 ,At3g04770 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum]
		RAFL05-02-H23	At3g05050 / cyclin-dependent protein kinase -related		RAFL05-02-H23 ,At3g05050 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain
	3_7080001_7110000				2	214	1	4446	0.0062126224	0.012425245	2
		RAFL05-14-P22	At3g20320 / expressed protein		At3g20320 ,RAFL05-14-P22 mce-related family protein contains Pfam PF02470: mce related protein
		RAFL07-16-F16	At3g20330 / aspartate carbamoyltransferase precursor (aspartate transcarbamylase)		RAFL07-16-F16 ,At3g20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana}
	3_510001_540000				2	214	2	4445	0.012046366	0.036139097	3
		RAFL04-18-N09	At3g02530 / chaperonin, putative		RAFL04-18-N09 ,At3g02530 chaperonin, putative similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL08-18-F20	At3g02530 / chaperonin, putative		RAFL08-18-F20 ,At3g02530 chaperonin, putative similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
	3_6930001_6960000				2	214	2	4445	0.012046366	0.036139097	3
		RAFL04-09-P17	At3g19960 / myosin		RAFL04-09-P17 ,At3g19960 myosin (ATM) nearly identical to myosin [Arabidopsis thaliana] GI:6491702; similar to myosin GI:6491702 from [Arabidopsis thaliana] ;contains Pfam profiles: PF00063: myosin head (motor domain), PF00612: IQ calmodulin-binding motif; identical to cDNA myosin (ATM) GI:297068
		RAFL07-11-N11	At3g19930 / sugar transport protein STP4		RAFL07-11-N11 ,At3g19930 sugar transport protein (STP4) identical to GB:S25009 GI:16524 from [Arabidopsis thaliana]
	3_23340001_23370000				2	214	2	4445	0.012046366	0.036139097	3
		RAFL03-02-H01	At3g63190 / expressed protein		At3g63190 ,RAFL03-02-H01 ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative similar to SP|P82231 Ribosome recycling factor, chloroplast precursor (Ribosome releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia oleracea}; contains Pfam profile PF01765: ribosome recycling factor
		RAFL06-10-C01	At3g63170 / expressed protein		At3g63170 ,RAFL06-10-C01 expressed protein
	5_19200001_19500000				3	213	8	4439	0.012270001	0.08589	7
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
	5_19800001_20100000				2	214	3	4444	0.019467412	0.058402237	3
		RAFL05-02-G06	At5g49720 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		RAFL05-02-G06 ,At5g49720 endo-1,4-beta-glucanase KORRIGAN (KOR) / cellulase (OR16pep) identical to endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis thaliana] GI:3978258; similar to endo-1,4-beta-D-glucanase; cellulase GI:5689613 from [Brassica napus]; identical to cDNA cellulase (OR16pep) GI:1022806
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
	2_12000001_12300000				2	214	3	4444	0.019467412	0.077869646	4
		RAFL04-12-K04	At2g28380 / expressed protein		RAFL04-12-K04 ,At2g28380 double-stranded RNA-binding domain (DsRBD)-containing protein contains Pfam profile PF00035: Double-stranded RNA binding motif
		RAFL08-11-H19	At2g28550 / AP2 domain transcription factor RAP2.7		RAFL08-11-H19 ,At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI:2281639) [Arabidopsis thaliana]
	5_18000001_21000000				10	206	91	4356	0.025575247	0.7672574	30
		RAFL06-11-E07	At5g46390 / Photosystem II D1 protein processing enzyme I (C-terminal processing protease),putative (ctpA)		At5g46390 ,RAFL06-11-E07 peptidase S41 family protein similar to C-terminal peptidase of the D1 protein [Hordeum vulgare subsp vulgare] GI:1296805; contains Pfam profiles PF03572: Peptidase family S41B, PF00595: PDZ domain (Also known as DHR or GLGF)
		RAFL06-11-E12	At5g46710 / expressed protein		RAFL06-11-E12 ,At5g46710 zinc-binding family protein similar zinc-binding protein [Pisum sativum] GI:16117799; contains Pfam profile PF04640 : Protein of unknown function, DUF597
		RAFL05-09-J08	At5g46700 / senescence-associated protein, putative		At5g46700 ,RAFL05-09-J08 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855
		RAFL08-11-A03	At5g48230 / acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase), putative		At5g48230 ,RAFL08-11-A03 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase
		RAFL05-16-L22	At5g48220 / indole-3-glycerol phosphate synthase (IGPS), putative		RAFL05-16-L22 ,At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572
		RAFL05-09-I21	At5g48250 / CONSTANS B-box zinc finger family protein		At5g48250 ,RAFL05-09-I21 zinc finger (B-box type) family protein contains similarity to CONSTANS homologs
		RAFL05-21-K14	At5g47320 / 40S ribosomal protein S19, mitochondrial precursor		At5g47320 ,RAFL05-21-K14 30S ribosomal protein S19, mitochondrial (RPS19)
		RAFL05-02-G06	At5g49720 / glycosyl hydrolase family 9 (endo-1,4-beta-glucanase)		RAFL05-02-G06 ,At5g49720 endo-1,4-beta-glucanase KORRIGAN (KOR) / cellulase (OR16pep) identical to endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis thaliana] GI:3978258; similar to endo-1,4-beta-D-glucanase; cellulase GI:5689613 from [Brassica napus]; identical to cDNA cellulase (OR16pep) GI:1022806
		RAFL07-18-G17	At5g48030 / DnaJ protein GFA2, putative		At5g48030 ,RAFL07-18-G17 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI:21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats)
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
	1_2010001_2040000				2	214	4	4443	0.028317545	0.11327018	4
		RAFL05-21-D14	At1g06640 / 2-oxoglutarate-dependent dioxygenase, putative		At1g06640 ,RAFL05-21-D14 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family
		RAFL09-15-M06	At1g06640 / 2-oxoglutarate-dependent dioxygenase, putative		At1g06640 ,RAFL09-15-M06 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family
	1_900001_1200000				3	213	12	4435	0.029519757	0.29519758	10
		RAFL07-08-I17	At1g04240 / auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3)		RAFL07-08-I17 ,At1g04240 auxin-responsive protein / indoleacetic acid-induced protein 3 (IAA3) identical to SP|Q38822 Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes from this gene
		RAFL07-16-H10	At1g03930 / protein kinase (ADK1)		RAFL07-16-H10 ,At1g03930 protein kinase (ADK1) identical to dual specificity kinase 1 (ADK1) [Arabidopsis thaliana] gi|1216484|gb|AAB47968; supported by cDNA gi:18700076 and gi:1216483. Note: differences between cDNAs in the 11th exon, possibly due to errors or alternative splicing.
		RAFL05-18-O24	At1g04190 / tetratricopeptide repeat (TPR)-containing protein		At1g04190 ,RAFL05-18-O24 tetratricopeptide repeat (TPR)-containing protein low similarity to protein antigen LmSTI1 [Leishmania major] GI:1698880; contains Pfam profile PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come from this gene
	1_6300001_6600000				2	214	5	4442	0.03844968	0.23069808	6
		RAFL05-12-D12	At1g18490 / expressed protein		RAFL05-12-D12 ,At1g18490 expressed protein
		RAFL07-16-P07	At1g18620 / expressed protein		RAFL07-16-P07 ,At1g18620 expressed protein
	4_16650001_16680000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-N03	At4g37660 / ribosomal - like protein		RAFL05-15-N03 ,At4g37660 ribosomal protein L12 family protein ribosomal protein L12, Liberobacter africanum, U09675
	4_14580001_14610000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-19-E02	At4g32410 / cellulose synthase, catalytic subunit, putative		RAFL04-19-E02 ,At4g32410 cellulose synthase, catalytic subunit, putative similar to cellulose synthase-1 [gi:9622874] and -2 [gi:9622876] from Zea mays
	1_23730001_23760000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-B04	At1g64880 / ribosomal protein S5 family		At1g64880 ,RAFL04-14-B04 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni]
	4_60001_90000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL02-08-A23	At4g00180 / YABBY3 axial regulator -related		At4g00180 ,RAFL02-08-A23 axial regulator YABBY3 (YABBY3) identical to YABBY3 [Arabidopsis thaliana] GI:4928753
	2_13470001_13500000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-09-C24	At2g31810 / acetolactate synthase, small subunit (ALS), putative		At2g31810 ,RAFL09-09-C24 acetolactate synthase small subunit, putative similar to gi:5931761 from Nicotiana plumbaginifolia
	2_9120001_9150000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-07-J20	At2g21440 / RNA recognition motif (RRM) - containing protein		RAFL07-07-J20 ,At2g21440 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	4_7080001_7110000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-10-K05	At4g14130 / xyloglucan endotransglycosylase (XTR7)		RAFL07-10-K05 ,At4g14130 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (XTR7) almost identical to xyloglucan endotransglycosylase-related protein XTR7 GI:1244760 from [Arabidopsis thaliana], one amino acid difference
	4_9780001_9810000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-13-L07	At4g19980 / hypothetical protein		RAFL05-13-L07 ,At4g19980 expressed protein ; expression supported by MPSS
	2_16590001_16620000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-16-P04	At2g39900 / LIM-domain protein -related		At2g39900 ,RAFL06-16-P04 LIM domain-containing protein similar to pollen specific LIM domain protein 1b [Nicotiana tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida] GI:4105772; contains Pfam profile PF00412: LIM domain
	3_5670001_5700000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-09-O15	At3g16720 / RING zinc finger protein -related		At3g16720 ,RAFL06-09-O15 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
	5_18900001_18930000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-K14	At5g47320 / 40S ribosomal protein S19, mitochondrial precursor		At5g47320 ,RAFL05-21-K14 30S ribosomal protein S19, mitochondrial (RPS19)
	3_21150001_21180000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-O16	At3g57150 / pseudouridine synthase (NAP57) -related		At3g57150 ,RAFL08-12-O16 dyskerin, putative / nucleolar protein NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus}; contains Pfam profiles PF01509: TruB family pseudouridylate synthase (N terminal domain), PF01472: PUA domain; supporting cDNA gi|8901185|gb|AF234984.2|AF234984
	2_3000001_3300000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-B20	At2g07350 / unknown similar to AGI		RAFL05-15-B20 ,At2g07350 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL05-15-B20
	5_18510001_18540000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-11-E07	At5g46390 / Photosystem II D1 protein processing enzyme I (C-terminal processing protease),putative (ctpA)		At5g46390 ,RAFL06-11-E07 peptidase S41 family protein similar to C-terminal peptidase of the D1 protein [Hordeum vulgare subsp vulgare] GI:1296805; contains Pfam profiles PF03572: Peptidase family S41B, PF00595: PDZ domain (Also known as DHR or GLGF)
	5_25080001_25110000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-15-E10	At5g63400 / adenylate kinase		At5g63400 ,RAFL04-15-E10 adenylate kinase identical to adenylate kinase (ATP-AMP transphosphorylase) [Arabidopsis thaliana] SWISS-PROT:O82514
	5_21150001_21180000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-12-D13	At5g52920 / pyruvate kinase, putative		RAFL09-12-D13 ,At5g52920 pyruvate kinase, putative similar to pyruvate kinase isozyme G, chloroplast precursor [Nicotiana tabacum] SWISS-PROT:Q40546
	4_15030001_15060000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-07-A06	At4g33360 / terpene cyclase/mutase-related		RAFL05-07-A06 ,At4g33360 terpene cyclase/mutase-related low similarity to squalene-hopene cyclase from Zymomonas mobilis [SP|P33990]
	2_12150001_12180000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-11-H19	At2g28550 / AP2 domain transcription factor RAP2.7		RAFL08-11-H19 ,At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI:2281639) [Arabidopsis thaliana]
	1_990001_1020000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-16-H10	At1g03930 / protein kinase (ADK1)		RAFL07-16-H10 ,At1g03930 protein kinase (ADK1) identical to dual specificity kinase 1 (ADK1) [Arabidopsis thaliana] gi|1216484|gb|AAB47968; supported by cDNA gi:18700076 and gi:1216483. Note: differences between cDNAs in the 11th exon, possibly due to errors or alternative splicing.
	5_20010001_20040000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-10-E02	At5g49945 / expressed protein		At5g49945 ,RAFL05-10-E02 expressed protein strong similarity to unknown protein (pir||T09896)
	4_13170001_13200000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-11-A20	At4g28760 / expressed protein		RAFL07-11-A20 ,At4g28760 expressed protein predicted protein. Arabidopsis thaliana
	5_19170001_19200000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-18-G17	At5g48030 / DnaJ protein GFA2, putative		At5g48030 ,RAFL07-18-G17 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI:21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats)
	2_3030001_3060000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-B20	At2g07350 / unknown similar to AGI		RAFL05-15-B20 ,At2g07350 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL05-15-B20
	1_1110001_1140000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-08-I17	At1g04240 / auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3)		RAFL07-08-I17 ,At1g04240 auxin-responsive protein / indoleacetic acid-induced protein 3 (IAA3) identical to SP|Q38822 Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes from this gene
	3_9240001_9270000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-F20	At3g25500 / formin homology 2 (FH2) domain-containing protein		At3g25500 ,RAFL08-12-F20 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181
	2_16920001_16950000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-09-L18	At2g40690 / glycerol-3-phosphate dehydrogenase		At2g40690 ,RAFL07-09-L18 NAD-dependent glycerol-3-phosphate dehydrogenase family protein low similarity to SP|Q26756 Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains Pfam profile PF01210: NAD-dependent glycerol-3-phosphate dehydrogenase
	1_3630001_3660000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-15-O03	At1g10950 / endomembrane protein 70, putative		RAFL08-15-O03 ,At1g10950 endomembrane protein 70, putative
	2_16200001_16230000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-09-H18	At2g38970 / C3HC4-type zinc finger protein family		At2g38970 ,RAFL04-09-H18 zinc finger (C3HC4-type RING finger) family protein very low similarity to SP|P97280 Inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mesocricetus auratus}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain
	1_7920001_7950000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-18-L02	At1g22500 / RING-H2 zinc finger protein ATL5 -related		At1g22500 ,RAFL04-18-L02 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger)
	1_3030001_3060000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-12-N02	At1g09415 / expressed protein		At1g09415 ,RAFL05-12-N02 NPR1/NIM1-interacting protein 3 (NIMIN-3) identical to NIMIN-3 protein [Arabidopsis thaliana] GI:12057158, cDNA NIMIN-3 protein (nimin-3 gene)GI:12057157
	1_11580001_11610000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-11-H22	At1g32210 / defender against cell death protein -related		RAFL05-11-H22 ,At1g32210 defender against cell death 1 (DAD1) identical to defender against cell death 1 (DAD-1, AtDAD1) [Arabidopsis thaliana] SWISS-PROT:Q39080
	4_14340001_14370000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-G10	At4g31810 / 3-hydroxyisobutyryl-coenzyme A hydrolase (CoA-thioester hydrolase) family		At4g31810 ,RAFL05-21-G10 enoyl-CoA hydratase/isomerase family protein similar to CHY1 [gi:8572760]; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein
	1_1260001_1290000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-18-N07	At1g04620 / expressed protein		RAFL04-18-N07 ,At1g04620 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family contains Pfam PF04432: Coenzyme F420 hydrogenase/dehydrogenase, beta domain; similar to Coenzyme F420 hydrogenase beta subunit (SP:Q00391) {Methanobacterium thermoautotrophicum}
	4_2520001_2550000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-10-P09	At4g04955 / expressed protein		At4g04955 ,RAFL07-10-P09 amidohydrolase family protein similar to SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces cerevisiae}; contains Pfam profile PF01979: Amidohydrolase family
	5_21480001_21510000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-19-A05	At5g53620 / expressed protein		At5g53620 ,RAFL04-19-A05 expressed protein
	5_24270001_24300000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL06-09-N10	At5g61060 / histone deacetylase - like		At5g61060 ,RAFL06-09-N10 histone deacetylase family protein similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens}; contains Pfam profile PF00850: Histone deacetylase family
	4_6210001_6240000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-14-K15	At4g12110 / C-4 methyl sterol oxidase, putative		RAFL05-14-K15 ,At4g12110 sterol desaturase family protein similar to sterol 4-alpha-methyl-oxidase GI:16973471 from [Arabidopsis thaliana]; contains Pfam profile PF01598: Sterol desaturase
	3_8130001_8160000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-G03	At3g22960 / pyruvate kinase, putative		At3g22960 ,RAFL05-21-G03 pyruvate kinase, putative similar to pyruvate kinase isozyme A, chloroplast precursor [Ricinus communis] SWISS-PROT:Q43117
	1_4110001_4140000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-B11	At1g12120 / expressed protein		At1g12120 ,RAFL08-12-B11 expressed protein contains Pfam domain PF05904: Plant protein of unknown function (DUF863)
	3_1830001_1860000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL03-04-H03	At3g06130 / heavy-metal-associated domain-containing protein		At3g06130 ,RAFL03-04-H03 heavy-metal-associated domain-containing protein contains Pfam heavy metal associated domain PF00403
	1_18030001_18060000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-L16	At1g49890 / expressed protein		RAFL04-14-L16 ,At1g49890 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566)
	5_10800001_10830000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-15-P16	At5g28840 / NAD-dependent epimerase/dehydratase family		At5g28840 ,RAFL04-15-P16 NAD-dependent epimerase/dehydratase family protein similar to sugar epimerase BlmG from Streptomyces verticillus GI:9937230; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family
	3_21810001_21840000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-21-D05	At3g59040 / pentatricopeptide (PPR) repeat-containing protein		RAFL05-21-D05 ,At3g59040 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
	1_27150001_27180000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL07-09-L10	At1g73180 / expressed protein		RAFL07-09-L10 ,At1g73180 eukaryotic translation initiation factor-related similar to eukaryotic translation initiation factor 2A (GI:21956484) [Homo sapiens]; similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Swiss-Prot:P55884) [Homo sapiens]
	4_1320001_1350000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-09-K08	At4g02990 / expressed protein		At4g02990 ,RAFL04-09-K08 mitochondrial transcription termination factor family protein / mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI:4584695; contains Pfam profile PF02536: mTERF
	3_10440001_10470000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-14-I22	At3g28050 / nodulin MtN21 family protein		At3g28050 ,RAFL09-14-I22 nodulin MtN21 family protein similar to MtN21 [Medicago truncatula] GI:2598575; contains Pfam profile PF00892: Integral membrane protein
	1_8370001_8400000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-17-P13	At1g23730 / carbonic anhydrase -related		RAFL04-17-P13 ,At1g23730 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P27140 Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase
	5_7530001_7560000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL09-10-K01	At5g22740 / glycosyltransferase family 2		At5g22740 ,RAFL09-10-K01 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535
	3_6960001_6990000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-L05	At3g20000 / membrane import protein -related		RAFL08-12-L05 ,At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin
	5_22740001_22770000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-12-C19	At5g56940 / ribosomal protein S16p family		RAFL04-12-C19 ,At5g56940 ribosomal protein S16 family protein contains Pfam profile PF00886: ribosomal protein S16
	1_1560001_1590000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-13-A12	At1g05385 / expressed protein		At1g05385 ,RAFL04-13-A12 photosystem II 11 kDa protein-related similar to Photosystem II 11 kDa protein precursor (SP|P74367)[strain PCC 6803] {Synechocystis sp.}
	1_19290001_19320000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-M12	At1g52930 / expressed protein		RAFL04-14-M12 ,At1g52930 brix domain-containing protein contains Pfam domain, PF04427: Brix domain
	5_720001_750000				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-16-B20	At5g03120 / expressed protein		At5g03120 ,RAFL04-16-B20 expressed protein
Cluster:3-0					A	B	C	D	P	P'	N
	5_16380001_16410000				3	230	0	4430	1.2323643E-4	1.2323643E-4	1
		RAFL09-11-F01	At5g41685 / expressed protein		At5g41685 ,RAFL09-11-F01 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) identical to SP|Q9ASY8 Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) {Arabidopsis thaliana}
		RAFL04-13-A06	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-13-A06 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
		RAFL04-17-A10	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-17-A10 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
	4_8340001_8370000				3	230	1	4429	4.7469826E-4	9.493965E-4	2
		RAFL09-09-O07	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL09-09-O07 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL06-16-N16	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL06-16-N16 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL07-08-A13	At4g16660 / heat shock protein hsp70, putative		RAFL07-08-A13 ,At4g16660 heat shock protein 70, putative / HSP70, putative
	3_11100001_11400000				3	230	3	4427	0.0022016333	0.008806533	4
		RAFL04-20-L13	At3g29240 / chloroplast lumen common protein family		RAFL04-20-L13 ,At3g29240 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678
		RAFL02-03-B07	At3g29160 / Snf1-related protein kinase KIN11 (AKIN11)		RAFL02-03-B07 ,At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI:1729444 from [Arabidopsis thaliana]
		RAFL08-09-A13	At3g29320 / glucan phosphorylase, putative		RAFL08-09-A13 ,At3g29320 glucan phosphorylase, putative similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4), 691-695 (1989))
	4_16050001_16080000				2	231	0	4430	0.0024866017	0.0024866017	1
		RAFL09-10-P09	At4g36130 / 60S ribosomal protein L8 (RPL8C)		At4g36130 ,RAFL09-10-P09 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8
		RAFL09-12-B12	At4g36130 / 60S ribosomal protein L8 (RPL8C)		At4g36130 ,RAFL09-12-B12 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8
	5_19500001_19530000				2	231	0	4430	0.0024866017	0.0024866017	1
		RAFL06-16-O18	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL06-16-O18 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
		RAFL04-13-N15	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL04-13-N15 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
	5_19500001_19800000				3	230	4	4426	0.0037112702	0.01855635	5
		RAFL06-16-O18	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL06-16-O18 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
		RAFL05-07-D18	At5g49510 / von Hippel-Lindau binding protein (VHL binding protein; VBP) like		At5g49510 ,RAFL05-07-D18 VHL binding protein, putative / prefoldin, putative similar to Swiss-Prot:Q15765 prefoldin subunit 3 (Von Hippel-Lindau binding protein 1; VHL binding protein-1; VBP-1; HIBBJ46) [Mus musculus]
		RAFL04-13-N15	At5g48810 / cytochrome b5, putative		At5g48810 ,RAFL04-13-N15 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
	1_20550001_20580000				3	230	4	4426	0.0037112702	0.014845081	4
		RAFL08-12-J19	At1g56070 / elongation factor -related		RAFL08-12-J19 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-13-C01	At1g56070 / elongation factor -related		RAFL04-13-C01 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL07-10-D07	At1g56070 / elongation factor -related		RAFL07-10-D07 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	2_8100001_8400000				3	230	5	4425	0.0057203583	0.022881433	4
		RAFL05-19-G09	At2g19480 / nucleosome assembly protein -related		RAFL05-19-G09 ,At2g19480 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP)
		RAFL05-21-G06	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL05-21-G06 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL07-08-N11	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		At2g18960 ,RAFL07-08-N11 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
	4_5430001_5460000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL08-18-K16	At4g10480 / alpha NAC -related		RAFL08-18-K16 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
		RAFL05-12-D01	At4g10480 / alpha NAC -related		RAFL05-12-D01 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
	3_2820001_2850000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL07-18-J05	At3g09210 / expressed protein		At3g09210 ,RAFL07-18-J05 KOW domain-containing transcription factor family protein ; est match
		RAFL04-15-D01	At3g09200 / 60S acidic ribosomal protein P0 (RPP0B)		At3g09200 ,RAFL04-15-D01 60S acidic ribosomal protein P0 (RPP0B) similar to putative 60S acidic ribosomal protein P0 GB:P50346 [Glycine max]
	2_8160001_8190000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL05-21-G06	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		RAFL05-21-G06 ,At2g18960 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
		RAFL07-08-N11	At2g18960 / ATPase 1, plasma membrane-type (proton pump 1) (proton-exporting ATPase), putative		At2g18960 ,RAFL07-08-N11 ATPase 1, plasma membrane-type, putative / proton pump 1, putative / proton-exporting ATPase, putative strong similarity to SP|P20649 ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus
	1_23880001_23910000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL06-09-G09	At1g65270 / expressed protein		RAFL06-09-G09 ,At1g65270 expressed protein
		RAFL05-19-K10	At1g65260 / expressed protein		At1g65260 ,RAFL05-19-K10 PspA/IM30 family protein contains Pfam PF04012: PspA/IM30 family profile; similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30) (Swiss-Prot:Q03943) [Pisum sativum]; similar to phage shock protein A (GI:28806161) [Vibrio parahaemolyticus]; similar to Phage shock protein A. (Swiss-Prot:P23853) [Shigella flexneri]
	2_7470001_7500000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL05-07-F05	At2g17360 / 40S ribosomal protein S4 (RPS4A)		At2g17360 ,RAFL05-07-F05 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
		RAFL09-18-O15	At2g17360 / 40S ribosomal protein S4 (RPS4A)		RAFL09-18-O15 ,At2g17360 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
	1_5370001_5400000				2	231	1	4429	0.007213332	0.014426664	2
		RAFL07-18-D08	At1g15690 / inorganic pyrophosphatase -related		At1g15690 ,RAFL07-18-D08 pyrophosphate-energized vacuolar membrane proton pump / pyrophosphate-energized inorganic pyrophosphatase (AVP-3) identical to pyrophosphate-energized vacuolar membrane proton pump (pyrophosphate-energized inorganic pyrophosphatase) SP:P31414 from [Arabidopsis thaliana]
		RAFL05-18-A12	At1g15690 / inorganic pyrophosphatase -related		At1g15690 ,RAFL05-18-A12 pyrophosphate-energized vacuolar membrane proton pump / pyrophosphate-energized inorganic pyrophosphatase (AVP-3) identical to pyrophosphate-energized vacuolar membrane proton pump (pyrophosphate-energized inorganic pyrophosphatase) SP:P31414 from [Arabidopsis thaliana]
	2_14460001_14490000				3	230	6	4424	0.008266786	0.041333932	5
		RAFL09-07-K24	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL09-07-K24 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL06-08-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL06-08-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL11-04-H04	At2g34480 / 60S ribosomal protein L18A (RPL18aB)		At2g34480 ,RAFL11-04-H04 60S ribosomal protein L18A (RPL18aB)
	3_4590001_4620000				3	230	6	4424	0.008266786	0.041333932	5
		RAFL06-08-N17	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL06-08-N17 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-J10	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL07-10-J10 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-F16	At3g13930 / acetyltransferase -related		At3g13930 ,RAFL07-10-F16 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
	5_9000001_9300000				3	230	7	4423	0.011378965	0.06827379	6
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
	3_4500001_4800000				4	229	15	4415	0.013005282	0.1430581	11
		RAFL06-08-N17	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL06-08-N17 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-J10	At3g13920 / eukaryotic translation initiation factor 4A-1 (eIF4A-1)		RAFL07-10-J10 ,At3g13920 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain
		RAFL07-10-F16	At3g13930 / acetyltransferase -related		At3g13930 ,RAFL07-10-F16 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain
		RAFL04-20-E04	At3g14100 / oligouridylate binding protein (UBP1), putative		RAFL04-20-E04 ,At3g14100 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies)
	2_12900001_13200000				4	229	15	4415	0.013005282	0.19507922	15
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
		RAFL07-17-K15	At2g31040 / expressed protein		RAFL07-17-K15 ,At2g31040 ATP synthase protein I -related contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I [Synechococcus sp.]
		RAFL08-14-P10	At2g30410 / TCP1-chaperonin cofactor A isolog		RAFL08-14-P10 ,At2g30410 tubulin folding cofactor A (KIESEL) identical to cDNA tubulin folding cofactor A, GI:20514256, SP|O04350 Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A homolog) {Arabidopsis thaliana}
		RAFL09-07-B08	At2g30970 / aspartate aminotransferase, mitochondrial (transaminase A/Asp1)		At2g30970 ,RAFL09-07-B08 aspartate aminotransferase, mitochondrial / transaminase A (ASP1) identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
	1_20940001_20970000				2	231	2	4428	0.013951966	0.041855898	3
		RAFL09-17-N17	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-17-N17 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
		RAFL09-18-P19	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-18-P19 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
	2_5460001_5490000				2	231	2	4428	0.013951966	0.041855898	3
		RAFL05-18-J16	At2g13360 / alanine-glyoxylate aminotransferase		RAFL05-18-J16 ,At2g13360 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL05-10-L06	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL05-10-L06 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
	1_1170001_1200000				2	231	2	4428	0.013951966	0.041855898	3
		RAFL07-17-M04	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL07-17-M04 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
		RAFL06-07-J21	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL06-07-J21 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
	3_3750001_3780000				2	231	2	4428	0.013951966	0.027903931	2
		RAFL07-11-B07	At3g11910 / ubiquitin carboxyl-terminal hydrolase -related		RAFL07-11-B07 ,At3g11910 ubiquitin-specific protease, putative strong similarity to ubiquitin-specific protease 12 (UBP12) [Arabidopsis thaliana] GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain
		RAFL06-07-B02	At3g11940 / 40S ribosomal protein S5 (RPS5B)		At3g11940 ,RAFL06-07-B02 40S ribosomal protein S5 (RPS5B) similar to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from [Arabidopsis thaliana]
	2_7200001_7500000				3	230	8	4422	0.015076893	0.12061515	8
		RAFL09-17-F19	At2g17033 / pentatricopeptide (PPR) repeat-containing protein		At2g17033 ,RAFL09-17-F19 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL05-07-F05	At2g17360 / 40S ribosomal protein S4 (RPS4A)		At2g17360 ,RAFL05-07-F05 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
		RAFL09-18-O15	At2g17360 / 40S ribosomal protein S4 (RPS4A)		RAFL09-18-O15 ,At2g17360 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
	2_13950001_13980000				2	231	3	4427	0.02249133	0.067473985	3
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
	1_4350001_4380000				2	231	3	4427	0.02249133	0.08996532	4
		RAFL11-11-G19	At1g12820 / transport inhibitor response 1 (TIR1), putative		At1g12820 ,RAFL11-11-G19 transport inhibitor response protein, putative E3 ubiquitin ligase SCF complex F-box subunit; similar to transport inhibitor response 1 GI:2352492 from [Arabidopsis thaliana]
		RAFL04-17-E10	At1g12770 / pentatricopeptide (PPR) repeat-containing protein		At1g12770 ,RAFL04-17-E10 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase
	5_16200001_16500000				3	230	10	4420	0.024273654	0.24273655	10
		RAFL09-11-F01	At5g41685 / expressed protein		At5g41685 ,RAFL09-11-F01 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) identical to SP|Q9ASY8 Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) {Arabidopsis thaliana}
		RAFL04-13-A06	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-13-A06 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
		RAFL04-17-A10	At5g41700 / ubiquitin-conjugating enzyme 8 (UBC8)		RAFL04-17-A10 ,At5g41700 ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131
	2_12000001_15000000				11	222	102	4328	0.02746028	0.8512687	31
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
		RAFL07-17-K15	At2g31040 / expressed protein		RAFL07-17-K15 ,At2g31040 ATP synthase protein I -related contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I [Synechococcus sp.]
		RAFL04-09-F23	At2g31610 / 40S ribosomal protein S3 (RPS3A)		RAFL04-09-F23 ,At2g31610 40S ribosomal protein S3 (RPS3A)
		RAFL08-14-P10	At2g30410 / TCP1-chaperonin cofactor A isolog		RAFL08-14-P10 ,At2g30410 tubulin folding cofactor A (KIESEL) identical to cDNA tubulin folding cofactor A, GI:20514256, SP|O04350 Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A homolog) {Arabidopsis thaliana}
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL09-06-J09	At2g32860 / glycosyl hydrolase family 1		RAFL09-06-J09 ,At2g32860 glycosyl hydrolase family 1 protein
		RAFL09-07-K24	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL09-07-K24 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL09-07-B08	At2g30970 / aspartate aminotransferase, mitochondrial (transaminase A/Asp1)		At2g30970 ,RAFL09-07-B08 aspartate aminotransferase, mitochondrial / transaminase A (ASP1) identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
		RAFL06-08-I18	At2g34420 / photosystem II type I chlorophyll a /b binding protein		At2g34420 ,RAFL06-08-I18 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL11-04-H04	At2g34480 / 60S ribosomal protein L18A (RPL18aB)		At2g34480 ,RAFL11-04-H04 60S ribosomal protein L18A (RPL18aB)
	1_2400001_2700000				5	228	30	4400	0.02841909	0.45470545	16
		RAFL11-04-A02	At1g07770 / 40S ribosomal protein S15A (RPS15aA)		At1g07770 ,RAFL11-04-A02 40S ribosomal protein S15A (RPS15aA) identical to GB:AAA61608 from [Arabidopsis thaliana] (Plant Physiol. 106 (1), 401-402 (1994))
		RAFL07-11-D02	At1g08520 / magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin IX chelatase) (CHLD), putative		RAFL07-11-D02 ,At1g08520 magnesium-chelatase subunit chlD, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum sativum]
		RAFL03-05-E07	At1g07920 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-05-E07 ,At1g07920 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL06-08-M13	At1g07920 / elongation factor 1-alpha (EF-1-alpha)		RAFL06-08-M13 ,At1g07920 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL05-02-J02	At1g08490 / nitrogen fixation protein. putative (NifS)		RAFL05-02-J02 ,At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V
	3_2700001_3000000				3	230	11	4419	0.029778728	0.29778728	10
		RAFL07-18-J05	At3g09210 / expressed protein		At3g09210 ,RAFL07-18-J05 KOW domain-containing transcription factor family protein ; est match
		RAFL08-10-G08	At3g09630 / 60S ribosomal protein L4/L1 (RPL4A)		RAFL08-10-G08 ,At3g09630 60S ribosomal protein L4/L1 (RPL4A) strong similarity to 60S ribosomal protein L1 GB:P49691
		RAFL04-15-D01	At3g09200 / 60S acidic ribosomal protein P0 (RPP0B)		At3g09200 ,RAFL04-15-D01 60S acidic ribosomal protein P0 (RPP0B) similar to putative 60S acidic ribosomal protein P0 GB:P50346 [Glycine max]
	1_20400001_20700000				3	230	11	4419	0.029778728	0.26800856	9
		RAFL08-12-J19	At1g56070 / elongation factor -related		RAFL08-12-J19 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL04-13-C01	At1g56070 / elongation factor -related		RAFL04-13-C01 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
		RAFL07-10-D07	At1g56070 / elongation factor -related		RAFL07-10-D07 ,At1g56070 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]
	4_5400001_5700000				2	231	4	4426	0.032636177	0.1305447	4
		RAFL08-18-K16	At4g10480 / alpha NAC -related		RAFL08-18-K16 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
		RAFL05-12-D01	At4g10480 / alpha NAC -related		RAFL05-12-D01 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
	2_5400001_5700000				2	231	4	4426	0.032636177	0.16318089	5
		RAFL05-18-J16	At2g13360 / alanine-glyoxylate aminotransferase		RAFL05-18-J16 ,At2g13360 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
		RAFL05-10-L06	At2g13360 / alanine-glyoxylate aminotransferase		At2g13360 ,RAFL05-10-L06 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
	5_9030001_9060000				2	231	4	4426	0.032636177	0.1305447	4
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
	2_13800001_14100000				3	230	12	4418	0.03588357	0.3588357	10
		RAFL11-12-G04	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL11-12-G04 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
		RAFL09-06-J09	At2g32860 / glycosyl hydrolase family 1		RAFL09-06-J09 ,At2g32860 glycosyl hydrolase family 1 protein
		RAFL04-18-P18	At2g33040 / mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)		At2g33040 ,RAFL04-18-P18 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
	2_17400001_17700000				3	230	12	4418	0.03588357	0.39471924	11
		RAFL06-09-K10	At2g41960 / expressed protein		At2g41960 ,RAFL06-09-K10 expressed protein
		RAFL05-21-P13	At2g42600 / phosphoenolpyruvate carboxylase		At2g42600 ,RAFL05-21-P13 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase
		RAFL08-09-E20	At2g41840 / 40S ribosomal protein S2 (RPS2C)		RAFL08-09-E20 ,At2g41840 40S ribosomal protein S2 (RPS2C)
	1_900001_1200000				3	230	12	4418	0.03588357	0.3588357	10
		RAFL07-17-M04	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL07-17-M04 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
		RAFL05-08-M23	At1g03860 / prohibitin 2 -related		RAFL05-08-M23 ,At1g03860 prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain / Band 7 family
		RAFL06-07-J21	At1g04410 / malate dehydrogenase, cytosolic, putative		At1g04410 ,RAFL06-07-J21 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase
	5_9000001_12000000				5	228	33	4397	0.038967177	0.62347484	16
		RAFL09-10-L23	At5g26000 / glycosyl hydrolase family 1, myrosinase precursor		RAFL09-10-L23 ,At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana]
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
		RAFL05-18-K01	At5g29000 / expressed protein		At5g29000 ,RAFL05-18-K01 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
		RAFL09-13-B05	At5g25980 / glycosyl hydrolase family 1		At5g25980 ,RAFL09-13-B05 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to thioglucosidase (GI:871992) [Arabidopsis thaliana]; similar to myrosinase precursor (EC 3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from [Arabidopsis thaliana]
		RAFL05-18-H11	At5g27700 / ribosomal protein S21 - like		RAFL05-18-H11 ,At5g27700 40S ribosomal protein S21 (RPS21C) ribosomal protein S21, Zea mays, PIR:T03945
	4_8100001_8400000				3	230	13	4417	0.04257905	0.38321143	9
		RAFL09-09-O07	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL09-09-O07 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL06-16-N16	At4g16720 / 60S ribosomal protein L15 (RPL15A)		RAFL06-16-N16 ,At4g16720 60S ribosomal protein L15 (RPL15A)
		RAFL07-08-A13	At4g16660 / heat shock protein hsp70, putative		RAFL07-08-A13 ,At4g16660 heat shock protein 70, putative / HSP70, putative
	1_2670001_2700000				2	231	5	4425	0.044206142	0.2210307	5
		RAFL07-11-D02	At1g08520 / magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin IX chelatase) (CHLD), putative		RAFL07-11-D02 ,At1g08520 magnesium-chelatase subunit chlD, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum sativum]
		RAFL05-02-J02	At1g08490 / nitrogen fixation protein. putative (NifS)		RAFL05-02-J02 ,At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V
	1_20700001_21000000				2	231	5	4425	0.044206142	0.26523685	6
		RAFL09-17-N17	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-17-N17 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
		RAFL09-18-P19	At1g57720 / elongation factor 1B-gamma, putative (eEF-1B gamma)		At1g57720 ,RAFL09-18-P19 elongation factor 1B-gamma, putative / eEF-1B gamma, putative similar to elongation factor 1B gamma GI:3868758 from [Oryza sativa]
	2_900001_1200000				2	231	5	4425	0.044206142	0.26523685	6
		RAFL05-08-A02	At2g03680 / nitrilase-associated protein -related		At2g03680 ,RAFL05-08-A02 expressed protein Alternative splicing exists based on EST evidence
		RAFL06-07-F15	At2g03120 / expressed protein		At2g03120 ,RAFL06-07-F15 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435)
	5_24000001_24030000				2	231	5	4425	0.044206142	0.2210307	5
		RAFL08-11-M03	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-11-M03 ,At5g60390 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
		RAFL09-07-I03	At5g60390 / elongation factor 1-alpha (EF-1-alpha)		At5g60390 ,RAFL09-07-I03 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana]
	5_19110001_19140000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-A02	At5g47930 / ribosomal protein S27		RAFL05-07-A02 ,At5g47930 40S ribosomal protein S27 (RPS27D)
	2_8370001_8400000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-19-G09	At2g19480 / nucleosome assembly protein -related		RAFL05-19-G09 ,At2g19480 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP)
	1_15300001_15600000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O07	At1g42550 / expressed protein		At1g42550 ,RAFL06-08-O07 expressed protein
	3_18720001_18750000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-I03	At3g50440 / hydrolase, alpha/beta fold family		RAFL05-16-I03 ,At3g50440 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
	2_17400001_17430000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL08-09-E20	At2g41840 / 40S ribosomal protein S2 (RPS2C)		RAFL08-09-E20 ,At2g41840 40S ribosomal protein S2 (RPS2C)
	5_10950001_10980000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-18-K01	At5g29000 / expressed protein		At5g29000 ,RAFL05-18-K01 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
	5_450001_480000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-13-K16	At5g02240 / expressed protein		At5g02240 ,RAFL06-13-K16 expressed protein
	4_30001_60000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-02-J15	At4g00100 / 40S ribosomal protein S13 (RPS13B)		At4g00100 ,RAFL11-02-J15 40S ribosomal protein S13 (RPS13A) similar to ribosomal protein S13; PF00312 (View Sanger Pfam): ribosomal protein S15; identical to cDNA AtRPS13A mRNA for cytoplasmic ribosomal protein S13 GI:6521011
	5_24720001_24750000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-07-A12	At5g62300 / 40S ribosomal protein S20 (RPS20C)		RAFL11-07-A12 ,At5g62300 40S ribosomal protein S20 (RPS20C) ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
	4_10860001_10890000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-12-B16	At4g22670 / tetratricopeptide repeat (TPR)-containing protein		RAFL05-12-B16 ,At4g22670 tetratricopeptide repeat (TPR)-containing protein similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain
	4_13470001_13500000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-02-E04	At4g29590 / expressed protein		At4g29590 ,RAFL05-02-E04 expressed protein
	3_19380001_19410000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-17-A01	At3g52300 / expressed protein		RAFL05-17-A01 ,At3g52300 ATP synthase D chain-related contains weak similarity to ATP synthase D chain, mitochondrial (EC 3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
	2_90001_120000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-17-F02	At2g01140 / fructose-bisphosphate aldolase, putative		RAFL04-17-F02 ,At2g01140 fructose-bisphosphate aldolase, putative similar to plastidic aldolase NPALDP1 from Nicotiana paniculata [GI:4827251]; contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-I
	4_15720001_15750000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-O24	At4g35250 / vestitone reductase-related		RAFL05-16-O24 ,At4g35250 vestitone reductase-related low similarity to vestitone reductase [Medicago sativa subsp. sativa] GI:973249
	1_15480001_15510000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O07	At1g42550 / expressed protein		At1g42550 ,RAFL06-08-O07 expressed protein
	5_21120001_21150000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-09-O08	At5g52870 / expressed protein		RAFL07-09-O08 ,At5g52870 expressed protein similar to unknown protein (gb|AAF24565.1)
	2_1110001_1140000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-08-A02	At2g03680 / nitrilase-associated protein -related		At2g03680 ,RAFL05-08-A02 expressed protein Alternative splicing exists based on EST evidence
	5_5130001_5160000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-O12	At5g15780 / proline-rich protein		At5g15780 ,RAFL06-08-O12 pollen Ole e 1 allergen and extensin family protein contains Pfam profile PF01190: Pollen proteins Ole e I family
	1_9180001_9210000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL03-05-O04	At1g26630 / initiation factor 5A-4 -related		At1g26630 ,RAFL03-05-O04 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similariy to SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
	1_11130001_11160000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-15-L13	At1g31190 / expressed protein		At1g31190 ,RAFL04-15-L13 inositol monophosphatase family protein similar to SP|P29218 Myo-inositol-1(or 4)-monophosphatase (EC 3.1.3.25) (Inositol monophosphatase) {Homo sapiens}; contains Pfam profile PF00459: Inositol monophosphatase family; EST gb|AA597395 comes from this gene
	3_11100001_11130000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL02-03-B07	At3g29160 / Snf1-related protein kinase KIN11 (AKIN11)		RAFL02-03-B07 ,At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI:1729444 from [Arabidopsis thaliana]
	3_21390001_21420000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-16-D03	At3g57790 / polygalacturonase, putative		RAFL04-16-D03 ,At3g57790 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to SP|P15922 Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) {Erwinia chrysanthemi}; contains PF00295: Glycosyl hydrolases family 28
	5_2880001_2910000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-13-C16	At5g09330 / expressed protein		At5g09330 ,RAFL07-13-C16 no apical meristem (NAM) family protein similar to NAC1 (GI:7716952) {Medicago truncatula}; contains Pfam PF02365: No apical meristem (NAM) protein
	3_7050001_7080000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-M06	At3g20290 / calcium-binding EF-hand family protein		RAFL05-07-M06 ,At3g20290 calcium-binding EF hand family protein similar to EH-domain containing protein 1 from {Mus musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9, receptor-mediated endocytosis 1 from [Caenorhabditis elegans] GI:13487775, GI:13487777, GI:13487779; contains INTERPRO:IPR002048 calcium-binding EF-hand domain
	5_2610001_2640000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-09-E11	At5g08180 / ribosomal protein L7Ae family		At5g08180 ,RAFL04-09-E11 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
	2_930001_960000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-07-F15	At2g03120 / expressed protein		At2g03120 ,RAFL06-07-F15 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435)
	5_18540001_18570000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-15-O08	At5g46430 / 60S ribosomal protein L32 (RPL32B)		RAFL04-15-O08 ,At5g46430 60S ribosomal protein L32 (RPL32B)
	3_1080001_1110000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-14-K01	At3g04120 / glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC)		RAFL06-14-K01 ,At3g04120 glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase identical to SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}
	3_15780001_15810000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL02-10-H10	At3g43980 / 40S ribosomal protein S29 (RPS29A)		At3g43980 ,RAFL02-10-H10 40S ribosomal protein S29 (RPS29A) ribosomal protein S29, rat, PIR:S30298
	5_24390001_24420000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-O08	At5g61410 / ribulose-5-phosphate-3-epimerase		At5g61410 ,RAFL05-21-O08 ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, putative strong similarity to SP|Q43157 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family
	5_15360001_15390000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL06-08-I23	At5g39130 / germin-like protein (AtGER2)		At5g39130 ,RAFL06-08-I23 germin-like protein, putative identical to germin-like protein subfamily 1 member 16 (SP|Q9FIC8)
	4_14640001_14670000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-02-A17	At4g32520 / glycine hydroxymethyltransferase (EC 2.1.2.1) - like protein		RAFL05-02-A17 ,At4g32520 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
	2_11160001_11190000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-13-A16	At2g26340 / expressed protein		RAFL05-13-A16 ,At2g26340 expressed protein
	3_8490001_8520000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-I07	At3g23670 / phragmoplast-associated kinesin-related protein, putative		At3g23670 ,RAFL04-20-I07 phragmoplast-associated kinesin-related protein, putative similar to kinesin like protein GB:CAB10194 from [Arabidopsis thaliana]
	4_600001_630000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-11-P20	At4g01480 / inorganic phosphatase -related		RAFL07-11-P20 ,At4g01480 inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase
	1_960001_990000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-08-M23	At1g03860 / prohibitin 2 -related		RAFL05-08-M23 ,At1g03860 prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain / Band 7 family
	5_21390001_21420000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-13-C23	At5g53450 / protein kinase family		RAFL05-13-C23 ,At5g53450 protein kinase family protein contains protein kinase domain, Pfam:PF00069
	1_7560001_7590000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-10-H23	At1g21640 / expressed protein		At1g21640 ,RAFL05-10-H23 ATP-NAD kinase family protein contains similarity to NAD kinase [Homo sapiens] gi|20070086|gb|AAM01195; contains Pfam domain, PF01513: ATP-NAD kinase
	2_19440001_19470000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-14-B18	At2g47510 / fumarase -related		At2g47510 ,RAFL07-14-B18 fumarate hydratase, putative / fumarase, putative similar to SP|P55250 Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase) {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
	2_12990001_13020000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL09-15-J08	At2g30620 / histone H1		At2g30620 ,RAFL09-15-J08 histone H1.2 nearly identical to SP|P26569 Histone H1.2 {Arabidopsis thaliana}
	2_17670001_17700000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-P13	At2g42600 / phosphoenolpyruvate carboxylase		At2g42600 ,RAFL05-21-P13 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase
	2_8730001_8760000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-15-O22	At2g20420 / succinyl-CoA ligase beta subunit		RAFL05-15-O22 ,At2g20420 succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative identical to SP|O82662 Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS- beta) {Arabidopsis thaliana}; similar to SP|O97580 Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.5) {Sus scrofa}; contains Pfam profiles PF00549: CoA-ligase, PF02222: ATP-grasp domain
	3_5880001_5910000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-02-I18	At3g17210 / expressed protein		At3g17210 ,RAFL11-02-I18 stable protein 1-related similar to stable protein 1 (GI:13445204) [Populus tremula] PMID:12376651; similar to pop3 peptide GB:AAC26526 from [Populus balsamifera subsp. trichocarpa X Populus deltoides]
	3_8910001_8940000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-18-B19	At3g24503 / aldehyde dehydrogenase (ALDH1a)		At3g24503 ,RAFL04-18-B19 aldehyde dehydrogenase (ALDH1a) identical to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana] gi|20530143|gb|AAM27004
	5_2580001_2610000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-H11	At5g08100 / asparaginase		At5g08100 ,RAFL04-20-H11 L-asparaginase / L-asparagine amidohydrolase identical to Swiss-Prot:P50287 L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) [Arabidopsis thaliana]
	5_20160001_20190000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-04-K21	At5g50250 / 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3 / RNA-binding protein cp31), putative		At5g50250 ,RAFL05-04-K21 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
	2_19350001_19380000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-16-K13	At2g47320 / peptidyl-prolyl cis-trans isomerase -related		At2g47320 ,RAFL05-16-K13 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type
	3_19320001_19350000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-20-A10	At3g52140 / tetratricopeptide repeat (TPR)-containing protein		At3g52140 ,RAFL04-20-A10 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain
	3_7200001_7230000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-21-A22	At3g20670 / histone H2A, putative		At3g20670 ,RAFL05-21-A22 histone H2A, putative strong similarity to histone H2A GB:AAF64418 GI:7595337 from Arabidopsis thaliana, Triticum aestivum GI:536892; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
	1_23610001_23640000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL04-16-M10	At1g64550 / ABC transporter family protein		RAFL04-16-M10 ,At1g64550 ABC transporter family protein similar to ABC transporter protein GB:AAF31030 GI:6899653 from [Leishmania major]
	5_9210001_9240000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-07-E10	At5g26360 / chaperonin, putative		At5g26360 ,RAFL05-07-E10 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
	1_6540001_6570000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-19-H01	At1g19000 / myb family transcription factor		At1g19000 ,RAFL05-19-H01 myb family transcription factor similar to MybSt1 GI:7705206 from [Solanum tuberosum]
	4_4680001_4710000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL09-11-I03	At4g08920 / Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1)		At4g08920 ,RAFL09-11-I03 cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4) contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
	1_11970001_12000000				1	232	0	4430	0.049967833	0.049967833	1
		RAFL07-07-L08	At1g33080 / MATE efflux protein family		RAFL07-07-L08 ,At1g33080 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family