Date:		2005/06/24
Method:		Fisher test
Cut off P-value:		0.05
Target dataset(s):		microarray data of zinnia ARRAY_ZE_00001
Query dataset(s):		SOM Cluster
C3			GeneTree cluster_id:C3		A	B	C	D	P	P'	N
	Cluster:2-1				3	241	7	4412	0.012910854	0.077465124	6
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		At3g53890 ,Z1565 40S ribosomal protein S21 homolog [Arabidopsis thaliana]
		RAFL05-17-F03	At2g32060 / 40S ribosomal protein S12 (RPS12C)		Z827 ,At2g32060 ribosomal protein S12 [Hordeum vulgare]
		RAFL07-13-J18	At2g37270 / 40S ribosomal protein S5 (RPS5A)		Z5061 ,At2g37270 putative 40S ribosomal protein S5 [Oryza sativa]
B2			GeneTree cluster_id:B2		A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-05-C12	At3g53460 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29)		At3g53460 ,Z5969 29kD B ribonucleoprotein [Nicotiana sylvestris]
A2			GeneTree cluster_id:A2		A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL09-15-F15	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,Z2090 plasma membrane proton ATPase [Kosteletzkya virginica]
		RAFL06-15-O15	At5g09220 / amino acid permease 2 (AAP2)		Z6876 ,At5g09220 amino acid carrier [Ricinus communis]
E4			GeneTree cluster_id:E4		A	B	C	D	P	P'	N
	Cluster:4-0				3	237	10	4413	0.026236488	0.2098919	8
		RAFL08-08-F03	At5g19690 / oligosaccharyl transferase STT3-related protein		Z2346 ,At5g19690 oligosaccharyl transferase STT3-like protein [Arabidopsis thaliana]
		RAFL07-09-G10	At3g18660 / glycogenin glucosyltransferase (glycogenin) - related		At3g18660 ,Z6956 ,Z850 hypothetical protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL07-14-E01	At2g38080 / laccase (diphenol oxidase), putative		Z741 ,At2g38080 ,Z832 diphenol oxidase [Nicotiana tabacum]/laccase
	Cluster:7-0				3	244	10	4406	0.028285021	0.22628017	8
		RAFL05-17-H06	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
C1			GeneTree cluster_id:C1		A	B	C	D	P	P'	N
	Cluster:1-2				7	167	9	4480	7.691689E-7	5.3841823E-6	7
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL05-21-E19	At1g48630 / WD-40 repeat auxin-dependent protein ARCA, putative		At1g48630 ,Z1752 G protein beta subunit-like [Medicago sativa]
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,Z5266 hydroxymethyltransferase [Arabidopsis thaliana]
	Cluster:0-2				2	77	14	4570	0.029166238	0.20416367	7
		RAFL08-16-E05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL09-09-A21	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
C5			GeneTree cluster_id:C5		A	B	C	D	P	P'	N
	Cluster:2-1				3	241	2	4417	0.0013085117	0.0039255354	3
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		Z611 ,At1g04480 putative putative 60S ribosomal protein L17 [Arabidopsis thaliana]
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		Z611 ,At1g04480 putative putative 60S ribosomal protein L17 [Arabidopsis thaliana]
		RAFL06-15-B04	At1g14810 / aspartate-semialdehyde dehydrogenase -related		At1g14810 ,Z1806 aspartate-semialdehyde dehydrogenase, putative [Arabidopsis thaliana]
C2			GeneTree cluster_id:C2		A	B	C	D	P	P'	N
	Cluster:1-0				2	147	4	4510	0.013980698	0.05592279	4
		RAFL05-14-L16	At3g19820 / cell elongation protein (DWARF1) (DIMINUTO) (DIM)		At3g19820 ,Z3771 brassinosteroid biosynthetic protein LKB [Pisum sativum]/DIMINUTO/Dwarf1
		RAFL04-18-H22	At1g01300 / chloroplast nucleoid DNA binding protein -related		At1g01300 ,Z6332 chloroplast nucleoid DNA binding protein, putative [Arabidopsis thaliana]
	Cluster:4-0				2	238	4	4419	0.034489654	0.13795862	4
		RAFL09-14-G07	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		Z446 ,At4g37870 phosphoenolpyruvate carboxykinase [Flaveria trinervia]
		RAFL05-14-F18	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		Z446 ,At4g37870 phosphoenolpyruvate carboxykinase [Flaveria trinervia]
D5			GeneTree cluster_id:D5		A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-10-F09	At1g70370 / aromatic rich glyco protein -related		Z3858 ,At1g70370 polygalacturonase isoenzyme 1 beta subunit [Arabidopsis thaliana]
A1			GeneTree cluster_id:A1		A	B	C	D	P	P'	N
	Cluster:1-2				13	161	77	4412	2.3164921E-5	6.0228794E-4	26
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		Z6046 ,At5g46110 triose phosphate/phosphate translocator [Flaveria pringlei]
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,Z7352 33kDa precursor protein of oxygen-evolving complex [Solanum tuberosum]
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,Z7352 33kDa precursor protein of oxygen-evolving complex [Solanum tuberosum]
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL07-18-K16	At5g03760 / glycosyltransferase family 2		At5g03760 ,Z2945 putative protein [Arabidopsis thaliana]
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL09-11-O13	At3g46780 / expressed protein		Z5531 ,At3g46780 putative protein [Arabidopsis thaliana]
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL09-15-H22	At1g05190 / ribosomal protein L6p family		At1g05190 ,Z3804 putative chloroplast 50S ribosomal protein, L6 [Arabidopsis thaliana]
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		Z6046 ,At5g46110 triose phosphate/phosphate translocator [Flaveria pringlei]
		RAFL05-08-N13	At4g02530 / chloroplast thylakoid lumen protein		At4g02530 ,Z6019 predicted protein of unknown function [Arabidopsis thaliana]
	Cluster:0-1				10	96	80	4477	3.0162279E-5	7.8421924E-4	26
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		Z7449 ,At1g44575 precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		Z7449 ,At1g44575 precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL06-08-I11	At2g46820 / expressed protein		Z302 ,At2g46820 unknown protein [Arabidopsis thaliana]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL08-09-L12	At3g26060 / peroxiredoxin -related		At3g26060 ,Z7102 peroxiredoxin Q [Sedum lineare]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
	Cluster:0-2				6	73	84	4500	0.0039265547	0.102090426	26
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL04-16-N08	At5g47110 / Lil3 protein		Z2874 ,At5g47110 Lil3 protein [Arabidopsis thaliana]
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL05-17-B17	At3g50820 / photosystem II oxygen-evolving complex 33 (OEC33)		Z9108 ,At3g50820 oxygen-evolving enhancer protein 1, chloroplast precursor [Solanum tuberosum]
		RAFL09-06-E16	At2g26080 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		Z6158 ,At2g26080 P-protein of the glycine cleavage system [Flaveria pringlei]
	Cluster:2-2				4	49	86	4524	0.018504295	0.48111168	26
		RAFL05-14-K24	At1g18060 / expressed protein		Z3053 ,At1g18060 unknown protein [Arabidopsis thaliana]
		RAFL06-12-L22	At4g34190 / stress enhanced protein 1 (SEP1)		Z7039 ,At4g34190 stress enhanced protein 1; SEP1 [Arabidopsis thaliana]
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,Z7649 rubber particle protein [Parthenium argentatum]
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,Z7649 rubber particle protein [Parthenium argentatum]
	Cluster:1-0				7	142	83	4431	0.024142498	0.627705	26
		RAFL06-16-H24	At5g11450 / oxygen-evolving complex related protein		At5g11450 ,Z3468 putative protein [Arabidopsis thaliana]
		RAFL04-15-H06	At3g25920 / 50S ribosomal protein L15, chloroplast precursor (CL15)		Z4749 ,At3g25920 Plastid ribosomal protein CL15 [Pisum sativum]
		RAFL05-02-L04	At4g02530 / chloroplast thylakoid lumen protein		At4g02530 ,Z6019 predicted protein of unknown function [Arabidopsis thaliana]
		RAFL05-08-K07	At4g01310 / ribosomal protein L5p family		At4g01310 ,Z6123 plastid ribosomal protein PRPL5 [Spinacia oleracea]
		RAFL05-04-C24	At3g13120 / chloroplast 30S ribosomal protein S10, putative		At3g13120 ,Z2819 plastid ribosomal protein S10 precursor [Mesembryanthemum crystallinum]
		RAFL05-17-D18	At5g55220 / trigger factor-related protein		At5g55220 ,Z4062 trigger factor-like protein [Arabidopsis thaliana]
		RAFL05-02-P08	At3g01480 / thylakoid lumen rotamase		Z1615 ,At3g01480 thylakoid lumen rotamase [Spinacia oleracea]
	Cluster:9-2				4	63	86	4510	0.039566863	1.0287384	26
		RAFL05-02-L02	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL09-09-P15	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL06-10-F03	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL05-03-O21	At5g05600 / oxidoreductase, 2OG-Fe(II) oxygenase family		Z7465 ,At5g05600 leucoanthocyanidin dioxygenase-like protein [Arabidopsis thaliana]
Cluster:7-0					A	B	C	D	P	P'	N
	E4		GeneTree cluster_id:E4		3	244	10	4406	0.028285021	0.22628017	8
		RAFL05-17-H06	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
		RAFL11-12-D09	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
		RAFL08-11-G18	At4g16190 / cysteine proteinase		At4g16190 ,Z8955 putative preprocysteine proteinase [Nicotiana tabacum]
Cluster:1-0					A	B	C	D	P	P'	N
	C2		GeneTree cluster_id:C2		2	147	4	4510	0.013980698	0.05592279	4
		RAFL05-14-L16	At3g19820 / cell elongation protein (DWARF1) (DIMINUTO) (DIM)		At3g19820 ,Z3771 brassinosteroid biosynthetic protein LKB [Pisum sativum]/DIMINUTO/Dwarf1
		RAFL04-18-H22	At1g01300 / chloroplast nucleoid DNA binding protein -related		At1g01300 ,Z6332 chloroplast nucleoid DNA binding protein, putative [Arabidopsis thaliana]
	A1		GeneTree cluster_id:A1		7	142	83	4431	0.024142498	0.627705	26
		RAFL06-16-H24	At5g11450 / oxygen-evolving complex related protein		At5g11450 ,Z3468 putative protein [Arabidopsis thaliana]
		RAFL04-15-H06	At3g25920 / 50S ribosomal protein L15, chloroplast precursor (CL15)		Z4749 ,At3g25920 Plastid ribosomal protein CL15 [Pisum sativum]
		RAFL05-02-L04	At4g02530 / chloroplast thylakoid lumen protein		At4g02530 ,Z6019 predicted protein of unknown function [Arabidopsis thaliana]
		RAFL05-08-K07	At4g01310 / ribosomal protein L5p family		At4g01310 ,Z6123 plastid ribosomal protein PRPL5 [Spinacia oleracea]
		RAFL05-04-C24	At3g13120 / chloroplast 30S ribosomal protein S10, putative		At3g13120 ,Z2819 plastid ribosomal protein S10 precursor [Mesembryanthemum crystallinum]
		RAFL05-17-D18	At5g55220 / trigger factor-related protein		At5g55220 ,Z4062 trigger factor-like protein [Arabidopsis thaliana]
		RAFL05-02-P08	At3g01480 / thylakoid lumen rotamase		Z1615 ,At3g01480 thylakoid lumen rotamase [Spinacia oleracea]
	B2		GeneTree cluster_id:B2		1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-05-C12	At3g53460 / 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29)		At3g53460 ,Z5969 29kD B ribonucleoprotein [Nicotiana sylvestris]
	D5		GeneTree cluster_id:D5		1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-10-F09	At1g70370 / aromatic rich glyco protein -related		Z3858 ,At1g70370 polygalacturonase isoenzyme 1 beta subunit [Arabidopsis thaliana]
Cluster:4-0					A	B	C	D	P	P'	N
	E4		GeneTree cluster_id:E4		3	237	10	4413	0.026236488	0.2098919	8
		RAFL08-08-F03	At5g19690 / oligosaccharyl transferase STT3-related protein		Z2346 ,At5g19690 oligosaccharyl transferase STT3-like protein [Arabidopsis thaliana]
		RAFL07-09-G10	At3g18660 / glycogenin glucosyltransferase (glycogenin) - related		At3g18660 ,Z6956 ,Z850 hypothetical protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL07-14-E01	At2g38080 / laccase (diphenol oxidase), putative		Z741 ,At2g38080 ,Z832 diphenol oxidase [Nicotiana tabacum]/laccase
	C2		GeneTree cluster_id:C2		2	238	4	4419	0.034489654	0.13795862	4
		RAFL09-14-G07	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		Z446 ,At4g37870 phosphoenolpyruvate carboxykinase [Flaveria trinervia]
		RAFL05-14-F18	At4g37870 / phosphoenolpyruvate carboxykinase (ATP) -related protein		Z446 ,At4g37870 phosphoenolpyruvate carboxykinase [Flaveria trinervia]
Cluster:2-1					A	B	C	D	P	P'	N
	C5		GeneTree cluster_id:C5		3	241	2	4417	0.0013085117	0.0039255354	3
		RAFL07-15-M07	At1g04480 / 60S ribosomal protein L23 (RPL23A)		Z611 ,At1g04480 putative putative 60S ribosomal protein L17 [Arabidopsis thaliana]
		RAFL05-18-P15	At1g04480 / 60S ribosomal protein L23 (RPL23A)		Z611 ,At1g04480 putative putative 60S ribosomal protein L17 [Arabidopsis thaliana]
		RAFL06-15-B04	At1g14810 / aspartate-semialdehyde dehydrogenase -related		At1g14810 ,Z1806 aspartate-semialdehyde dehydrogenase, putative [Arabidopsis thaliana]
	C3		GeneTree cluster_id:C3		3	241	7	4412	0.012910854	0.077465124	6
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		At3g53890 ,Z1565 40S ribosomal protein S21 homolog [Arabidopsis thaliana]
		RAFL05-17-F03	At2g32060 / 40S ribosomal protein S12 (RPS12C)		Z827 ,At2g32060 ribosomal protein S12 [Hordeum vulgare]
		RAFL07-13-J18	At2g37270 / 40S ribosomal protein S5 (RPS5A)		Z5061 ,At2g37270 putative 40S ribosomal protein S5 [Oryza sativa]
	A2		GeneTree cluster_id:A2		2	242	2	4417	0.01525385	0.045761548	3
		RAFL09-15-F15	At4g30190 / ATPase 2, plasma membrane-type (proton pump 2) (proton-exporting ATPase), putative		At4g30190 ,Z2090 plasma membrane proton ATPase [Kosteletzkya virginica]
		RAFL06-15-O15	At5g09220 / amino acid permease 2 (AAP2)		Z6876 ,At5g09220 amino acid carrier [Ricinus communis]
Cluster:2-2					A	B	C	D	P	P'	N
	A1		GeneTree cluster_id:A1		4	49	86	4524	0.018504295	0.48111168	26
		RAFL05-14-K24	At1g18060 / expressed protein		Z3053 ,At1g18060 unknown protein [Arabidopsis thaliana]
		RAFL06-12-L22	At4g34190 / stress enhanced protein 1 (SEP1)		Z7039 ,At4g34190 stress enhanced protein 1; SEP1 [Arabidopsis thaliana]
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,Z7649 rubber particle protein [Parthenium argentatum]
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,Z7649 rubber particle protein [Parthenium argentatum]
Cluster:1-2					A	B	C	D	P	P'	N
	C1		GeneTree cluster_id:C1		7	167	9	4480	7.691689E-7	5.3841823E-6	7
		RAFL09-11-C22	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL11-01-K15	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL09-10-C09	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL06-12-D05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL11-06-L17	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL05-21-E19	At1g48630 / WD-40 repeat auxin-dependent protein ARCA, putative		At1g48630 ,Z1752 G protein beta subunit-like [Medicago sativa]
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,Z5266 hydroxymethyltransferase [Arabidopsis thaliana]
	A1		GeneTree cluster_id:A1		13	161	77	4412	2.3164921E-5	6.0228794E-4	26
		RAFL08-12-B15	At5g46110 / phosphate/triose-phosphate translocator, putative		Z6046 ,At5g46110 triose phosphate/phosphate translocator [Flaveria pringlei]
		RAFL11-12-B10	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,Z7352 33kDa precursor protein of oxygen-evolving complex [Solanum tuberosum]
		RAFL08-10-G06	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL03-03-A07	At5g66570 / photosystem II oxygen-evolving complex 33 (OEC33)		At5g66570 ,Z7352 33kDa precursor protein of oxygen-evolving complex [Solanum tuberosum]
		RAFL06-15-G17	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL07-18-K16	At5g03760 / glycosyltransferase family 2		At5g03760 ,Z2945 putative protein [Arabidopsis thaliana]
		RAFL09-06-C15	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL11-03-I17	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL09-11-O13	At3g46780 / expressed protein		Z5531 ,At3g46780 putative protein [Arabidopsis thaliana]
		RAFL07-16-C20	At5g01530 / light-harvesting chlorophyll a/b binding protein		Z3440 ,At5g01530 Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
		RAFL09-15-H22	At1g05190 / ribosomal protein L6p family		At1g05190 ,Z3804 putative chloroplast 50S ribosomal protein, L6 [Arabidopsis thaliana]
		RAFL03-06-H04	At5g46110 / phosphate/triose-phosphate translocator, putative		Z6046 ,At5g46110 triose phosphate/phosphate translocator [Flaveria pringlei]
		RAFL05-08-N13	At4g02530 / chloroplast thylakoid lumen protein		At4g02530 ,Z6019 predicted protein of unknown function [Arabidopsis thaliana]
Cluster:0-2					A	B	C	D	P	P'	N
	A1		GeneTree cluster_id:A1		6	73	84	4500	0.0039265547	0.102090426	26
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL04-16-N08	At5g47110 / Lil3 protein		Z2874 ,At5g47110 Lil3 protein [Arabidopsis thaliana]
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		Z3344 ,At1g54780 unknown protein [Arabidopsis thaliana]
		RAFL05-17-B17	At3g50820 / photosystem II oxygen-evolving complex 33 (OEC33)		Z9108 ,At3g50820 oxygen-evolving enhancer protein 1, chloroplast precursor [Solanum tuberosum]
		RAFL09-06-E16	At2g26080 / glycine dehydrogenase (decarboxylating) (glycine decarboxylase/glycine cleavage system P-protein), putative		Z6158 ,At2g26080 P-protein of the glycine cleavage system [Flaveria pringlei]
	C1		GeneTree cluster_id:C1		2	77	14	4570	0.029166238	0.20416367	7
		RAFL08-16-E05	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
		RAFL09-09-A21	At5g17920 / 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		At5g17920 ,Z4970 cobalamine-independent methionine synthase [Solenostemon scutellarioides]
Cluster:0-1					A	B	C	D	P	P'	N
	A1		GeneTree cluster_id:A1		10	96	80	4477	3.0162279E-5	7.8421924E-4	26
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		Z7449 ,At1g44575 precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
		RAFL07-12-E12	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		Z7449 ,At1g44575 precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
		RAFL09-17-N23	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL07-18-J01	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL06-08-I11	At2g46820 / expressed protein		Z302 ,At2g46820 unknown protein [Arabidopsis thaliana]
		RAFL07-12-M09	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL07-18-C20	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
		RAFL08-09-L12	At3g26060 / peroxiredoxin -related		At3g26060 ,Z7102 peroxiredoxin Q [Sedum lineare]
		RAFL08-18-C10	At2g21330 / fructose-bisphosphate aldolase, putative		Z3569 ,At2g21330 homologous to plastidic aldolases [Solanum tuberosum]
Cluster:9-2					A	B	C	D	P	P'	N
	A1		GeneTree cluster_id:A1		4	63	86	4510	0.039566863	1.0287384	26
		RAFL05-02-L02	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL09-09-P15	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL06-10-F03	At1g19180 / expressed protein		Z684 ,Z931 ,Z3688 ,At1g19180 unknown protein [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana]
		RAFL05-03-O21	At5g05600 / oxidoreductase, 2OG-Fe(II) oxygenase family		Z7465 ,At5g05600 leucoanthocyanidin dioxygenase-like protein [Arabidopsis thaliana]