Supplementary material for van Dijk et al., Proc. Natl. Acad. Sci. USA, 10.1073/pnas.250216797
Table 4.
Species names and accession numbers of the protein sequences that were extracted from the databases and used for signature searches
| CRYAA | AQP2 | IRBP | A2AB | vWF | FIBg | HBA | HBB | CYTB |
Length of the aligned sequences (aa) | 173 | 111 | 334 | 383 | 354 | 77 | 142 | 147 | 336 |
|
|
|
|
|
|
|
|
|
|
Platypus, Ornithorhynchus anatinus |
|
|
|
|
|
| P01979 | 70463 |
|
Red kangaroo, Macropus rufus | P02502 |
|
|
|
|
|
|
|
|
Gray kangaroo, Macropus giganteus |
|
|
|
| AJ224670 |
| P01975 | P02106 |
|
Wombat, Vombatus ursinus |
|
| AF025386 |
|
|
|
|
| AF102814 |
N. American opossum, Didelphis virginiana | P02503 |
| Z11814 | Y15943 | AF226848 |
| P01976 | 70461 | P41303 |
Pygmy anteater, Cyclopes didactylus |
|
|
|
|
| * |
|
|
|
Northern tamandua, Tamandua mexicana | P02485 |
|
|
|
|
|
|
|
|
Three-toed sloth, Bradypus tridactylus | P02487 |
| U48708 |
| U31603 |
| P14525 | 70431 |
|
Nine-banded armadillo, Dasypus novemcinctus |
| Y10637 |
|
|
|
| P01964 | 70430 | O21337 |
Hairy armadillo, Chaetophractus villosus |
|
|
|
|
|
|
|
|
|
African elephant, Loxodonta africana | P02498 |
| U48711 |
| U31615 | * | P01955 | P02085 | P24958 |
Indian elephant, Elephas maximus |
| Y10629 |
| Y12525 |
|
| P01954 | 70427 | BAA25017 |
Dugong, Dugong dugon |
| Y15948 | U48583 | Y15946 | U31608 | * |
|
| Q33401 |
Manatee, Trichechus manatus | P02500 |
|
|
|
| * | P07414 | P07415 | BAA20280 |
Cape rock hyrax, Procavia capensis | P02499 | Y10631 | U48586 | Y12523 | U31619 | * | P01957 | P02086 | BAA20291 |
Aardvark, Orycteropus afer | P02501 | Y10632 | U48712 | Y12522 | U31617 | * |
|
| CAB41633 |
Elephant shrew, Elephantulus rufescens | P82530 |
| U48584 |
| U31612 | * |
|
| AAD16970 |
Elephant shrew, Macroscelides proboscideus |
| Y10630 |
| Y12524 |
|
|
|
|
|
Madagascar hedgehog, Echinops telfairi |
|
|
| Y17692 | AF076478 |
| P24291 | P24292 |
|
Golden mole, Amblysomus hottentotus |
| Y15952 |
| Y12526 | U97534 |
|
|
|
|
Mole rat, Spalax ehrenbergi | P90246 |
|
|
|
|
|
|
|
|
House mouse, Mus domesticus |
|
| Z11813 | L00974 |
| * |
|
| P00158 |
Brown rat, Rattus norvegicus |
| D13906 |
|
| U50044 | X05860 | P01946 | P02091 |
|
N. American porcupine, Erethizon dorsatum |
|
| AF179292 |
|
|
|
|
|
|
Agouti, Dasyprocta agouti |
|
|
|
| U31607 |
|
|
|
|
Guinea pig, Cavia porcellus | P02491 | Y15947 |
| U25723 |
|
| P01947 | P02095 | AJ222767 |
S. American pika, Ochotona princeps | P02492 |
|
|
|
|
|
|
|
|
Rabbit, Oryctolagus cuniculus | P02493 | Y10636 | Z11812 | Y16189 | U31618 |
| P01948 | P02057 | P34863 |
Human, Homo sapiens | P02489 | D31846 | J05253 | M34041 | M25851 | X02415 | P01922 | P02023 | P00156 |
Tamarin, Saguinus oedipus |
|
|
|
|
| * |
|
|
|
Brown lemur, Eulemur fulvus |
|
|
|
|
|
| 70172 | P02053 |
|
Red-bellied lemur, Eulemur rubriventer |
|
|
|
|
|
|
|
| AAD13169 |
Bush baby, Galago crassicaudatus | P02495 |
| Z11805 |
| AF061064 |
|
|
|
|
Flying lemur, Cynocephalus variegatus |
|
| Z11807 |
| U31606 |
|
|
|
|
Tree shrew, Tupaia glis | P82532 |
| Z11808 |
| AF061063 |
| P01941 | 70361 |
|
Hedgehog, Erinaceus europaeus | P82533 | Y15949 | AF025390 | Y12521 | U97536 |
| P01949 | P02059 | Q36368 |
European mole, Talpa europaeus |
| Y15951 |
| Y12520 |
|
| P01951 | P02061 |
|
Eastern mole, Scalopus aquaticus |
|
|
|
| AF076479 |
|
|
|
|
Water shrew, Sorex palustris |
|
| U48587 |
|
|
| P01950 | P02060 | O79460 |
Fruit-eating bat, Artibeus jamaicensis | P02482 |
|
|
|
|
|
|
| Q95738 |
Pallid bat, Antrozous pallidus |
|
|
|
|
|
| P14387 | P14388 |
|
Fruit bat, Dobsonia moluccensis |
|
|
|
| U31609 |
|
|
|
|
Round-eared bat,Tonatia bidens |
|
| Z11810 |
| U31622 |
|
|
|
|
Flying fox, Pteropus poliocephalus | P82531 |
|
|
|
|
| P14390 | 70397 |
|
Flying fox, Pteropus hypomelanus |
|
| Z11809 |
|
|
|
|
|
|
Pangolin, Manis sp. | P02484 | Y10635 | AF025389 |
| U97535 | * |
|
|
|
Cat, Felis catus |
|
| Z11811 | AJ251174 | AF061062 |
| P07405 | 89085 | P48886 |
Hyena, Crocuta crocuta |
|
|
|
|
| U86660 |
|
|
|
American mink, Mustela vison | P02483 |
|
|
|
|
|
|
|
|
Fox, Vulpes velox |
|
| AF179292 |
|
|
|
|
|
|
Dog, Canis familiaris | Y10638 | L76227 | AAD04775 | ||||||
Coyote, Canis latrans |
|
|
|
|
| U86661 | P01952 | P02056 |
|
Gray seal, Halichoerus grypus | P02481 |
|
|
|
|
|
|
|
|
White rhinoceros, Ceratotherium simum | P02479 |
|
|
| U31604 |
|
|
| O03207 |
Indian rhinoceros, Rhinoceros unicornis |
|
|
|
|
|
| P09906 | P09907 |
|
Sumatran rhinoceros, Dicerorhinus sumatrensis |
|
|
|
|
| * |
|
|
|
Tapir, Tapirus pinchaque |
|
| AF179294 |
|
|
|
|
|
|
Horse, Equus caballus (vWF: E. asinus) | P02478 | Y10634 | U48710 | Y15945 | U31610 |
| P01958 | P02062 | P48665 |
Horse, Equus przewalskii |
|
|
|
|
| U86659 |
|
|
|
Porpoise, Phocoena phocoena | P02477 |
|
|
| AF061060 |
|
|
| AAC48508 |
Bottle-nosed dolphin, Tursiops truncatus |
|
|
|
|
|
| P18978 | P18990 |
|
Goose-beaked whale, Ziphius cavirostris |
|
|
|
|
| * |
|
|
|
Beluga whale, Delphinapterus leucas |
|
|
|
|
| U86651 |
|
|
|
Sperm whale, Physeter catodon |
|
|
|
|
|
|
|
| P41290 |
Sperm whale, Physeter macrocephalus |
| AJ251101 |
|
|
|
|
|
|
|
Humpback whale, Megaptera novaeangliae |
|
|
|
| AF226849 |
|
|
|
|
Fin whale, Balaenoptera physalus |
| AJ277647 |
| AJ251175 |
|
|
|
|
|
Minke whale, Balaenoptera acutorostrata | P02474 |
| U50820 |
|
|
| P18971 | P18984 |
|
Hippopotamus, Hippopotamus amphibius |
|
| AF108837 |
| AF108832 |
|
|
| Q33500 |
Cow, Bos taurus | P02470 | Y10633 | J04441 | Y15944 | AF004285 |
| P01966 | P02070 |
|
Giraffe, Giraffa camelopardalis |
|
|
|
|
| U86649 |
|
|
|
Camel, Camelus dromedarius |
|
|
|
|
|
|
|
| P24952 |
Pig, Sus scrofa | P02475 | AJ251100 | U48588 |
| S78431 | U86655 | P01965 | P02067 |
|
CRYAA, a A-crystallin; AQP2, aquaporin-2; IRBP, interphotoreceptor retinol-binding protein; A2AB, a -2B adrenergic receptor; vWF, von Willebrand factor; FIBg, g -fibrinogen; HBA, hemoglobin-a ; HBB, hemoglobin-b ; CYTB, cytochrome b. Sequences marked * are taken from ref. 1.
References:
1. Gatesy, J. (1998) in The Emergence of Whales: Evolutionary Patterns in the Origin of Cetacea, ed. Thewissen, J. G. M. (Plenum, New York), pp. 63-111.